Query 027977
Match_columns 216
No_of_seqs 94 out of 96
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 06:28:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l69_A Rossmann 2X3 fold prote 86.6 1.6 5.6E-05 34.0 6.2 105 94-203 5-124 (134)
2 3a1y_G Acidic ribosomal protei 60.3 53 0.0018 28.4 9.4 82 92-176 23-108 (284)
3 2j01_J 50S ribosomal protein L 58.7 40 0.0014 27.0 7.8 88 93-191 23-115 (173)
4 1wf6_A Similar to S.pombe -RAD 57.1 56 0.0019 24.6 8.0 34 83-116 35-68 (132)
5 3hp4_A GDSL-esterase; psychrot 57.0 29 0.001 25.8 6.4 42 166-207 91-136 (185)
6 3h5l_A Putative branched-chain 54.7 1E+02 0.0034 26.3 11.2 82 90-184 163-250 (419)
7 4evq_A Putative ABC transporte 52.5 53 0.0018 27.2 7.8 83 90-186 150-238 (375)
8 1zav_A 50S ribosomal protein L 51.7 59 0.002 26.2 7.7 90 92-190 23-121 (180)
9 1usg_A Leucine-specific bindin 49.5 71 0.0024 26.0 8.0 82 89-184 136-223 (346)
10 3hut_A Putative branched-chain 45.7 77 0.0026 26.0 7.7 82 90-185 138-225 (358)
11 3td9_A Branched chain amino ac 44.9 1.1E+02 0.0036 25.3 8.5 82 89-185 147-235 (366)
12 3n6q_A YGHZ aldo-keto reductas 43.1 1.6E+02 0.0055 25.3 10.3 89 100-195 112-201 (346)
13 3snr_A Extracellular ligand-bi 42.9 1.1E+02 0.0037 24.9 8.1 83 89-185 133-221 (362)
14 3ipc_A ABC transporter, substr 42.7 1.2E+02 0.0042 24.7 8.6 83 89-185 136-224 (356)
15 3l46_A Protein ECT2; alternati 41.5 28 0.00095 26.3 4.0 33 87-119 20-52 (112)
16 3j21_k Acidic ribosomal protei 41.1 69 0.0023 28.7 7.1 83 92-177 23-109 (339)
17 3rmj_A 2-isopropylmalate synth 40.9 1.4E+02 0.0046 26.8 9.1 102 98-212 30-139 (370)
18 3ewb_X 2-isopropylmalate synth 40.4 1E+02 0.0035 26.5 8.0 104 97-213 22-133 (293)
19 3lkb_A Probable branched-chain 39.6 1.4E+02 0.0047 25.0 8.5 83 89-185 141-229 (392)
20 4h3d_A 3-dehydroquinate dehydr 38.8 66 0.0022 27.4 6.4 37 156-193 143-183 (258)
21 3gbv_A Putative LACI-family tr 38.6 82 0.0028 25.0 6.6 114 89-208 68-199 (304)
22 3nvt_A 3-deoxy-D-arabino-heptu 37.8 1.9E+02 0.0065 26.2 9.6 100 98-202 189-308 (385)
23 2o5a_A BH1328 protein; BHR21, 37.4 75 0.0026 24.7 6.0 74 101-198 4-81 (125)
24 3pdi_B Nitrogenase MOFE cofact 36.9 1.1E+02 0.0039 27.9 8.1 113 91-213 169-314 (458)
25 3ggo_A Prephenate dehydrogenas 36.1 70 0.0024 27.5 6.2 48 86-136 165-215 (314)
26 3eau_A Voltage-gated potassium 33.9 2.2E+02 0.0074 24.1 9.6 104 98-207 96-202 (327)
27 2qip_A Protein of unknown func 33.7 83 0.0028 24.4 5.8 77 94-185 51-140 (165)
28 2cou_A ECT2 protein; BRCT doma 32.9 55 0.0019 23.9 4.4 33 87-119 11-43 (109)
29 3st8_A Bifunctional protein GL 32.5 1.9E+02 0.0064 26.0 8.7 89 92-188 57-150 (501)
30 3iz5_s 60S acidic ribosomal pr 32.4 1.7E+02 0.0057 26.0 8.1 81 92-176 26-110 (319)
31 3lop_A Substrate binding perip 32.3 2.1E+02 0.0072 23.5 10.2 96 89-203 139-240 (364)
32 3jsy_A Acidic ribosomal protei 31.7 2E+02 0.0069 23.7 8.2 81 92-176 20-104 (213)
33 3erp_A Putative oxidoreductase 30.8 1.9E+02 0.0065 25.0 8.2 87 100-193 133-220 (353)
34 3ic4_A Glutaredoxin (GRX-1); s 30.8 1.2E+02 0.004 20.2 5.5 76 92-172 12-91 (92)
35 2lqo_A Putative glutaredoxin R 30.7 1.3E+02 0.0045 21.3 6.0 76 92-174 4-82 (92)
36 3dwv_A Glutathione peroxidase- 30.5 69 0.0024 24.5 4.8 66 60-126 17-87 (187)
37 3sg0_A Extracellular ligand-bi 30.1 71 0.0024 26.4 5.0 30 154-184 215-244 (386)
38 1gve_A Aflatoxin B1 aldehyde r 29.9 2.2E+02 0.0074 24.2 8.3 89 98-192 81-170 (327)
39 1r7h_A NRDH-redoxin; thioredox 28.9 1E+02 0.0034 19.3 4.7 72 94-173 3-75 (75)
40 2id1_A Hypothetical protein; a 28.9 1.6E+02 0.0054 23.0 6.6 74 101-198 4-81 (130)
41 2bp1_A Aflatoxin B1 aldehyde r 28.3 2.1E+02 0.0073 24.8 8.1 89 98-192 114-203 (360)
42 2gkg_A Response regulator homo 28.1 1.1E+02 0.0039 20.3 5.1 33 90-125 4-36 (127)
43 2b7e_A PRE-mRNA processing pro 28.0 60 0.002 22.4 3.5 34 166-210 5-39 (59)
44 2lnb_A Z-DNA-binding protein 1 27.7 19 0.00065 26.6 0.9 21 159-179 43-63 (80)
45 3u5i_q A0, L10E, 60S acidic ri 26.7 1.7E+02 0.006 25.8 7.2 80 92-176 23-105 (312)
46 2d59_A Hypothetical protein PH 26.2 79 0.0027 24.0 4.4 83 88-181 18-104 (144)
47 1vr6_A Phospho-2-dehydro-3-deo 26.2 2.9E+02 0.0099 24.8 8.7 101 98-203 153-273 (350)
48 3eaf_A ABC transporter, substr 26.0 1.6E+02 0.0055 24.7 6.7 83 89-185 139-230 (391)
49 3n0w_A ABC branched chain amin 25.2 2.9E+02 0.01 22.9 8.8 79 90-182 141-225 (379)
50 1whv_A Poly(A)-specific ribonu 24.8 48 0.0016 25.3 2.7 44 82-127 6-50 (100)
51 1lqa_A TAS protein; TIM barrel 23.9 3.3E+02 0.011 23.0 9.6 90 98-193 104-211 (346)
52 1yj7_A ESCJ; mixed alpha/beta, 22.8 46 0.0016 27.0 2.5 38 155-192 2-46 (171)
53 3u3z_A Microcephalin; DNA repa 22.5 51 0.0017 26.6 2.7 25 153-177 10-34 (199)
54 1vli_A Spore coat polysacchari 22.3 3.4E+02 0.011 24.8 8.4 82 97-183 96-189 (385)
55 3i09_A Periplasmic branched-ch 22.2 3.3E+02 0.011 22.4 8.2 79 90-182 139-223 (375)
56 1ctf_A Ribosomal protein L7/L1 22.2 1.3E+02 0.0044 21.7 4.5 27 90-116 43-69 (74)
57 3g1w_A Sugar ABC transporter; 22.1 1.5E+02 0.0052 23.7 5.5 109 90-207 61-185 (305)
58 3f4w_A Putative hexulose 6 pho 21.9 76 0.0026 24.9 3.6 46 155-205 79-125 (211)
59 3ups_A Iojap-like protein; PSI 21.8 2.9E+02 0.01 21.6 7.1 74 101-198 20-97 (136)
60 2nte_A BARD-1, BRCA1-associate 21.3 1.2E+02 0.004 24.1 4.6 28 90-117 1-28 (210)
61 3l46_A Protein ECT2; alternati 20.8 55 0.0019 24.7 2.4 27 153-179 23-49 (112)
62 2y9j_Y Lipoprotein PRGK, prote 20.8 47 0.0016 26.8 2.2 40 157-196 2-48 (170)
63 1lxn_A Hypothetical protein MT 20.3 87 0.003 23.0 3.4 48 165-214 20-68 (99)
No 1
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=86.62 E-value=1.6 Score=34.00 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=76.1
Q ss_pred EEEecCChHHHHHHHHHHHhcCCcceEEEEeC-CCchhchHHHHhcc----------cccchhhhhc----cCCCCcEEE
Q 027977 94 LLLLGFKVEEAVKIRQFLKELDGEFLEVIFCT-EDMIPRSLWEAMNT----------KQTNLEAVKV----AESLPRICF 158 (216)
Q Consensus 94 ILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt-~e~~~~pLGel~~~----------~~~d~e~~k~----~~~~~r~vi 158 (216)
|.++.-+.|-+++++.+.+..|. +|+.+. +..+.-.+.+++.. +.++|..-.. ..+.+-.+|
T Consensus 5 ivvfstdeetlrkfkdiikkngf---kvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslgaqvlii 81 (134)
T 2l69_A 5 IVVFSTDEETLRKFKDIIKKNGF---KVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLII 81 (134)
T ss_dssp EEECCCCHHHHHHHHHHHHHTTC---EEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHhcCc---eEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEE
Confidence 34444468889999999999987 887775 45677788888763 2233332111 224778899
Q ss_pred EcCCCHHHHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHH
Q 027977 159 LSGLSGEEMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEV 203 (216)
Q Consensus 159 ~sGft~eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL 203 (216)
+-+-+.+.+.++-..+|..|.. +-.++.|..-...|..|+.|+
T Consensus 82 iydqdqnrleefsrevrrrgfe--vrtvtspddfkkslerlirev 124 (134)
T 2l69_A 82 IYDQDQNRLEEFSREVRRRGFE--VRTVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp EECSCHHHHHHHHHHHHHTTCC--EEEESSHHHHHHHHHHHHHHH
T ss_pred EEeCchhHHHHHHHHHHhcCce--EEEecChHHHHHHHHHHHHHh
Confidence 9999999999999999999974 345667777777777777765
No 2
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=60.26 E-value=53 Score=28.45 Aligned_cols=82 Identities=12% Similarity=0.192 Sum_probs=60.2
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhccc-ccchhhhhccCCCCcEEEEcCCCHHHH
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTK-QTNLEAVKVAESLPRICFLSGLSGEEM 167 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~-~~d~e~~k~~~~~~r~vi~sGft~eEl 167 (216)
+.++++++ +..+...||+-|.+-|+ +++.+..-.+..-++..-+.. .++++.....-.-+-.++|++-+-.++
T Consensus 23 ~~v~v~~~~gl~~~ql~~lR~~lr~~g~---~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~~l~G~~al~Ft~~dp~~v 99 (284)
T 3a1y_G 23 PVIALVDVSSMPAYPLSQMRRLIRENGG---LLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKL 99 (284)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHTTE---EEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCCCTTEEEEEESSCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHhcCc---EEEEeHHHHHHHHHhhCccccccccHHHHhhhcCCCEEEEEECCCHHHH
Confidence 46777655 69999999999998876 888899999998888765321 233443221122456888998899999
Q ss_pred HHHHHHccc
Q 027977 168 MMFIEAFPE 176 (216)
Q Consensus 168 ~~~I~a~k~ 176 (216)
.+++..++.
T Consensus 100 ak~l~~f~~ 108 (284)
T 3a1y_G 100 YKFLQQNRQ 108 (284)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHhcc
Confidence 999999874
No 3
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=58.70 E-value=40 Score=27.01 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=58.3
Q ss_pred eEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHH
Q 027977 93 ALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMM 169 (216)
Q Consensus 93 aILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~ 169 (216)
.++++.+ +.++...||+-|.+-|+ +++.+..-.+..-++. . +++. ...-.-+-.++|+ -+-.++.+
T Consensus 23 ~v~v~~~~gltv~~~~~LR~~lr~~g~---~~~V~KNtL~~~Al~~----~--~~~~-~~~l~G~~a~~fs-~dp~~~ak 91 (173)
T 2j01_J 23 SFFLVNYQGLPAKETHALRQALKQNGA---RLFVAKNTLIRLALKE----L--GLPE-LDGLQGPSAVVFY-EDPVAAAK 91 (173)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHCCc---EEEEehhHHHHHHHhc----C--CCCc-cccccCCEEEEEe-CCHHHHHH
Confidence 5666555 79999999999998887 6666655554444442 2 2332 2212245688888 78888999
Q ss_pred HHHHcccCC--CCCccEEEEccCC
Q 027977 170 FIEAFPETG--LEPAVFAALVPNS 191 (216)
Q Consensus 170 ~I~a~k~~G--l~~~ifAvlTPtN 191 (216)
++..|.+.. -...+++...+..
T Consensus 92 ~l~~f~k~~~~~~l~ikgg~~eg~ 115 (173)
T 2j01_J 92 TLVQFAKSNPKGIPQVKSGLLQGQ 115 (173)
T ss_pred HHHHHHHhCCCCCeEEEEEEECCE
Confidence 999997754 3355677666543
No 4
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=57.08 E-value=56 Score=24.63 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=30.1
Q ss_pred CCCCCCCCCceEEEecCChHHHHHHHHHHHhcCC
Q 027977 83 NADDPTFGPPALLLLGFKVEEAVKIRQFLKELDG 116 (216)
Q Consensus 83 ~~dd~~yGPpaILL~GF~~EE~~kIR~lL~elg~ 116 (216)
......|-.-.+.+.||...+..+++.++..+|+
T Consensus 35 ~~~~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg 68 (132)
T 1wf6_A 35 QAPEDLLDGCRIYLCGFSGRKLDKLRRLINSGGG 68 (132)
T ss_dssp CCCTTTTTTCEEEEESCCSHHHHHHHHHHHHTTC
T ss_pred cccccccCCEEEEEECCChHHHHHHHHHHHHCCC
Confidence 3445788889999999999999999999999999
No 5
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=57.01 E-value=29 Score=25.81 Aligned_cols=42 Identities=7% Similarity=0.187 Sum_probs=25.0
Q ss_pred HHHHHHHHcccCCCCCccEEEEccCCCCCC----HHHHHHHHHHHH
Q 027977 166 EMMMFIEAFPETGLEPAVFAALVPNSADKP----LQELIEEVMGDH 207 (216)
Q Consensus 166 El~~~I~a~k~~Gl~~~ifAvlTPtN~~W~----l~eLieEL~~EH 207 (216)
.+.++|+.+|+.+...++..+..|.+..+. +.+.++++.+++
T Consensus 91 ~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~ 136 (185)
T 3hp4_A 91 NLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDT 136 (185)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHc
Confidence 478899999998753333333357666553 344555555554
No 6
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=54.68 E-value=1e+02 Score=26.27 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=51.1
Q ss_pred CCceEEEecCC----hHHHHHHHHHHHhcCCcceEEEEeCC--CchhchHHHHhcccccchhhhhccCCCCcEEEEcCCC
Q 027977 90 GPPALLLLGFK----VEEAVKIRQFLKELDGEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLS 163 (216)
Q Consensus 90 GPpaILL~GF~----~EE~~kIR~lL~elg~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft 163 (216)
|..+|.+++-+ ..-.+.+++.+...|++.+-....+. .++...|..+.. ...++|++.++.
T Consensus 163 ~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~-------------~~~d~v~~~~~~ 229 (419)
T 3h5l_A 163 PNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRA-------------DPPAVIVVTHFY 229 (419)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHH-------------SCCSEEEECCCC
T ss_pred CCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHh-------------cCCCEEEEcccc
Confidence 55666666553 33556777788888885443333332 233333333221 135688888898
Q ss_pred HHHHHHHHHHcccCCCCCccE
Q 027977 164 GEEMMMFIEAFPETGLEPAVF 184 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~~if 184 (216)
.++...+++.+++.|+..+++
T Consensus 230 ~~~~~~~~~~~~~~g~~~~~~ 250 (419)
T 3h5l_A 230 PQDQALFMNQFMTDPTNSLVY 250 (419)
T ss_dssp HHHHHHHHHHHTTSCCSCEEE
T ss_pred CchHHHHHHHHHHcCCCceEE
Confidence 888999999999999955444
No 7
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=52.55 E-value=53 Score=27.15 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=48.5
Q ss_pred CCceEEEecC----ChHHHHHHHHHHHhcCCcceEEEEeCC--CchhchHHHHhcccccchhhhhccCCCCcEEEEcCCC
Q 027977 90 GPPALLLLGF----KVEEAVKIRQFLKELDGEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLS 163 (216)
Q Consensus 90 GPpaILL~GF----~~EE~~kIR~lL~elg~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft 163 (216)
|-.+|.+++- ..+..+.+++.|.+.|++.+....+.. .++...+..+.. .....||+.+ .
T Consensus 150 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~-------------~~~dai~~~~-~ 215 (375)
T 4evq_A 150 GLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIAS-------------LKPDCVYAFF-S 215 (375)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH-------------HCCSEEEEEC-C
T ss_pred CCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHh-------------cCCCEEEEec-C
Confidence 6666666543 245677788888888885443333332 223322222221 0234555544 4
Q ss_pred HHHHHHHHHHcccCCCCCccEEE
Q 027977 164 GEEMMMFIEAFPETGLEPAVFAA 186 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~~ifAv 186 (216)
......+++++++.|+..++++.
T Consensus 216 ~~~a~~~~~~~~~~g~~vp~~~~ 238 (375)
T 4evq_A 216 GGGALKFIKDYAAANLGIPLWGP 238 (375)
T ss_dssp THHHHHHHHHHHHTTCCCCEEEE
T ss_pred cchHHHHHHHHHHcCCCceEEec
Confidence 46788899999999998666654
No 8
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=51.67 E-value=59 Score=26.15 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=60.5
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhc---CCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcC-CCH
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKEL---DGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSG-LSG 164 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~el---g~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sG-ft~ 164 (216)
+.++++.+ +.++...||+-|.+- |+ +++.+..-.+..-++.. +++.....-.-+-.++|+. -+-
T Consensus 23 ~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~---~~~V~KNtL~~~Al~~~------~~~~L~~~l~G~~a~~fs~~~dp 93 (180)
T 1zav_A 23 SLILFADFLGFTVADLTELRSRLREKYGDGA---RFRVVKNTLLNLALKNA------EYEGYEEFLKGPTAVLYVTEGDP 93 (180)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHHHHHHTTSE---EEEEECHHHHHHHHHHT------TCCSCGGGCSSSEEEEEESSSCT
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHhcccCCe---EEEEehHHHHHHHHccC------ChhhHHHhCcCCEEEEEecCCCH
Confidence 45677655 699999999999987 65 77777666666555542 2332211122456788887 788
Q ss_pred HHHHHHHHHcccCC--CCCccEEEEccC
Q 027977 165 EEMMMFIEAFPETG--LEPAVFAALVPN 190 (216)
Q Consensus 165 eEl~~~I~a~k~~G--l~~~ifAvlTPt 190 (216)
.++.+++..|.+.. -...+++...+.
T Consensus 94 ~~~ak~l~~f~k~~~~~~l~ikgg~~eg 121 (180)
T 1zav_A 94 VEAVKIIYNFYKDKKADLSRLKGGFLEG 121 (180)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEEETT
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEECC
Confidence 89999999887654 335567766554
No 9
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=49.53 E-value=71 Score=25.95 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=49.0
Q ss_pred CCCceEEEecCC----hHHHHHHHHHHHhcCCcceEEEEeCC--CchhchHHHHhcccccchhhhhccCCCCcEEEEcCC
Q 027977 89 FGPPALLLLGFK----VEEAVKIRQFLKELDGEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGL 162 (216)
Q Consensus 89 yGPpaILL~GF~----~EE~~kIR~lL~elg~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGf 162 (216)
+|...|.+++-+ .+..+.+++.|.+.|++.+....++. .++...+..+.. .....|++.+
T Consensus 136 ~g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~-------------~~~d~i~~~~- 201 (346)
T 1usg_A 136 VKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKK-------------ENIDFVYYGG- 201 (346)
T ss_dssp TCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHH-------------TTCCEEEEES-
T ss_pred cCCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHh-------------cCCCEEEEcC-
Confidence 566666555433 45667788889998886554333332 233323333321 1234666655
Q ss_pred CHHHHHHHHHHcccCCCCCccE
Q 027977 163 SGEEMMMFIEAFPETGLEPAVF 184 (216)
Q Consensus 163 t~eEl~~~I~a~k~~Gl~~~if 184 (216)
+......+++++++.|+..+++
T Consensus 202 ~~~~a~~~~~~~~~~g~~~~~~ 223 (346)
T 1usg_A 202 YYPEMGQMLRQARSVGLKTQFM 223 (346)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEE
T ss_pred cchHHHHHHHHHHHcCCCCeEE
Confidence 5566778999999999876644
No 10
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=45.71 E-value=77 Score=26.03 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=49.8
Q ss_pred CCceEEEecC----ChHHHHHHHHHHHhcCCcceEEEEeC--CCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCC
Q 027977 90 GPPALLLLGF----KVEEAVKIRQFLKELDGEFLEVIFCT--EDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLS 163 (216)
Q Consensus 90 GPpaILL~GF----~~EE~~kIR~lL~elg~e~vkVi~vt--~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft 163 (216)
|-..|.+++- ..+..+.+++.|.+.|++.+....+. ..++...+..+.. . ....||+. .+
T Consensus 138 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~------~-------~~d~i~~~-~~ 203 (358)
T 3hut_A 138 GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIED------E-------APQAIYLA-MA 203 (358)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH------H-------CCSEEEEE-SC
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHh------c-------CCCEEEEc-cC
Confidence 6677776653 25677788888999888554433333 2333333333322 0 23344444 56
Q ss_pred HHHHHHHHHHcccCCCCCccEE
Q 027977 164 GEEMMMFIEAFPETGLEPAVFA 185 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~~ifA 185 (216)
......+++++++.|+..+++.
T Consensus 204 ~~~a~~~~~~~~~~g~~~p~~~ 225 (358)
T 3hut_A 204 YEDAAPFLRALRARGSALPVYG 225 (358)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEE
T ss_pred chHHHHHHHHHHHcCCCCcEEe
Confidence 6678899999999999766543
No 11
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=44.92 E-value=1.1e+02 Score=25.33 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=48.1
Q ss_pred CCCceEEEe-cC----ChHHHHHHHHHHHhcCCcceEEEEeCC--CchhchHHHHhcccccchhhhhccCCCCcEEEEcC
Q 027977 89 FGPPALLLL-GF----KVEEAVKIRQFLKELDGEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSG 161 (216)
Q Consensus 89 yGPpaILL~-GF----~~EE~~kIR~lL~elg~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sG 161 (216)
+|-..|.++ +- .....+.+++.+.+.|++.+... ++. .++...+..+.. ....+|++ .
T Consensus 147 ~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~~~d~~~~~~~l~~-------------~~~d~v~~-~ 211 (366)
T 3td9_A 147 LGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSGDQDFSAQLSVAMS-------------FNPDAIYI-T 211 (366)
T ss_dssp SCCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTTCCCCHHHHHHHHH-------------TCCSEEEE-C
T ss_pred cCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCCCccHHHHHHHHHh-------------cCCCEEEE-c
Confidence 576666555 42 24456778888888888544433 332 233333333321 12345555 4
Q ss_pred CCHHHHHHHHHHcccCCCCCccEE
Q 027977 162 LSGEEMMMFIEAFPETGLEPAVFA 185 (216)
Q Consensus 162 ft~eEl~~~I~a~k~~Gl~~~ifA 185 (216)
....+...+++++++.|+..+++.
T Consensus 212 ~~~~~a~~~~~~~~~~g~~~~~~~ 235 (366)
T 3td9_A 212 GYYPEIALISRQARQLGFTGYILA 235 (366)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cchhHHHHHHHHHHHcCCCceEEe
Confidence 556778889999999999766543
No 12
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=43.12 E-value=1.6e+02 Score=25.28 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=58.7
Q ss_pred ChHH-HHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcccCC
Q 027977 100 KVEE-AVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETG 178 (216)
Q Consensus 100 ~~EE-~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~~G 178 (216)
+.+. .+.+.+-|..||.+-+.+..+=.-+...++.+.+..-+.-.+ .+.-|.+=+|+|+.+++.+++..++..|
T Consensus 112 s~~~i~~~~e~SL~rL~~dyiDl~~lH~p~~~~~~~e~~~al~~l~~-----~Gkir~iGvSn~~~~~l~~~~~~~~~~~ 186 (346)
T 3n6q_A 112 SRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQ-----SGKALYVGISSYSPERTQKMVELLREWK 186 (346)
T ss_dssp CHHHHHHHHHHHHHHHTCSCEEEEEECSCCTTSCHHHHHHHHHHHHH-----TTSEEEEEEESCCHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHhCCCcEeEEEEeCCCCCCCHHHHHHHHHHHHH-----cCCeeEEEeCCCCHHHHHHHHHHHHHcC
Confidence 4444 356888899999998888877554444444444331111111 3467888899999999999999888877
Q ss_pred CCCccEEEEccCCCCCC
Q 027977 179 LEPAVFAALVPNSADKP 195 (216)
Q Consensus 179 l~~~ifAvlTPtN~~W~ 195 (216)
.+. .++=.+-|.-+.
T Consensus 187 ~~~--~~~Q~~~~l~~~ 201 (346)
T 3n6q_A 187 IPL--LIHQPSYNLLNR 201 (346)
T ss_dssp CCC--CEEECBCBTTBC
T ss_pred CCe--EEEeccCchhhc
Confidence 643 345566665443
No 13
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=42.87 E-value=1.1e+02 Score=24.89 Aligned_cols=83 Identities=7% Similarity=0.081 Sum_probs=47.0
Q ss_pred CCCceEEEecCC----hHHHHHHHHHHHhcCCcceEEEEeCC--CchhchHHHHhcccccchhhhhccCCCCcEEEEcCC
Q 027977 89 FGPPALLLLGFK----VEEAVKIRQFLKELDGEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGL 162 (216)
Q Consensus 89 yGPpaILL~GF~----~EE~~kIR~lL~elg~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGf 162 (216)
+|-.+|.+++-+ .+..+.+++.|.+.|++.+....+.. .++...+..+.. .....||+.+
T Consensus 133 ~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~-------------~~~dav~~~~- 198 (362)
T 3snr_A 133 NNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVA-------------ANPDAILVGA- 198 (362)
T ss_dssp TTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHH-------------HCCSEEEEEC-
T ss_pred cCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHh-------------cCCCEEEEec-
Confidence 466666665432 45677788888888875443333332 222222322221 0234555544
Q ss_pred CHHHHHHHHHHcccCCCCCccEE
Q 027977 163 SGEEMMMFIEAFPETGLEPAVFA 185 (216)
Q Consensus 163 t~eEl~~~I~a~k~~Gl~~~ifA 185 (216)
.......+++++++.|+..++++
T Consensus 199 ~~~~a~~~~~~~~~~g~~~p~i~ 221 (362)
T 3snr_A 199 SGTAAALPQTTLRERGYNGLIYQ 221 (362)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CcchHHHHHHHHHHcCCCccEEe
Confidence 45667788888888888765533
No 14
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=42.67 E-value=1.2e+02 Score=24.73 Aligned_cols=83 Identities=11% Similarity=0.068 Sum_probs=48.4
Q ss_pred CCCceEEEecC----ChHHHHHHHHHHHhcCCcceEEEEeC--CCchhchHHHHhcccccchhhhhccCCCCcEEEEcCC
Q 027977 89 FGPPALLLLGF----KVEEAVKIRQFLKELDGEFLEVIFCT--EDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGL 162 (216)
Q Consensus 89 yGPpaILL~GF----~~EE~~kIR~lL~elg~e~vkVi~vt--~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGf 162 (216)
||-..|.++.- ..+..+.+++.|.+.|++.+....++ ..++...+..+.. ....+|++.+.
T Consensus 136 ~g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~-------------~~~d~v~~~~~ 202 (356)
T 3ipc_A 136 FKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKE-------------AGVSIIYWGGL 202 (356)
T ss_dssp CTTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHH-------------TTCCEEEEESC
T ss_pred cCCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh-------------cCCCEEEEccC
Confidence 56555555433 24566778888888888655444433 2233333332221 12456666654
Q ss_pred CHHHHHHHHHHcccCCCCCccEE
Q 027977 163 SGEEMMMFIEAFPETGLEPAVFA 185 (216)
Q Consensus 163 t~eEl~~~I~a~k~~Gl~~~ifA 185 (216)
..+...+++++++.|+..++++
T Consensus 203 -~~~a~~~~~~~~~~g~~~~~~~ 224 (356)
T 3ipc_A 203 -HTEAGLIIRQAADQGLKAKLVS 224 (356)
T ss_dssp -HHHHHHHHHHHHHHTCCCEEEE
T ss_pred -chHHHHHHHHHHHCCCCCcEEE
Confidence 4567789999999999866543
No 15
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=41.46 E-value=28 Score=26.34 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=28.0
Q ss_pred CCCCCceEEEecCChHHHHHHHHHHHhcCCcce
Q 027977 87 PTFGPPALLLLGFKVEEAVKIRQFLKELDGEFL 119 (216)
Q Consensus 87 ~~yGPpaILL~GF~~EE~~kIR~lL~elg~e~v 119 (216)
++|-.-.|-+-||+.++...+++++..+|+.+-
T Consensus 20 p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~ 52 (112)
T 3l46_A 20 PPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYL 52 (112)
T ss_dssp CTTTTCEECEESCCHHHHHHHHHHHHHTTCEEC
T ss_pred CccCCeEEEEeCCCHHHHHHHHHHHHHcCCEEC
Confidence 356667899999999999999999999999433
No 16
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.10 E-value=69 Score=28.65 Aligned_cols=83 Identities=11% Similarity=0.170 Sum_probs=58.2
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcc-cccchhhhhccCCCCcEEEEcCCCHHHH
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNT-KQTNLEAVKVAESLPRICFLSGLSGEEM 167 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~-~~~d~e~~k~~~~~~r~vi~sGft~eEl 167 (216)
+.++++++ +..++..||+-|.+-|+ +++.+..-++..-++..... -.++++.....-.-+-.++|+.-+-.++
T Consensus 23 ~~v~v~~~~gl~v~ql~~lR~~lr~~g~---~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~L~G~~~l~Ft~~dp~~v 99 (339)
T 3j21_k 23 PVVALVDVSSMPAYPLSQMRRLIRENNG---LLRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKL 99 (339)
T ss_dssp SEEEEEECTTCCTTHHHHHHHHHHHTTE---EEECCHHHHSCHHHHHHHSSCCCSSSSSSSCCCCTTEEEEEESSCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhcCCe---EEEEEhHHHHHHHHhcChhhhccccHHHHHHHhcCCeEEEEECCCHHHH
Confidence 46777766 59999999999998776 77777777777777765431 1233443221122466899999999999
Q ss_pred HHHHHHcccC
Q 027977 168 MMFIEAFPET 177 (216)
Q Consensus 168 ~~~I~a~k~~ 177 (216)
.+++..++..
T Consensus 100 ~k~l~~~~~~ 109 (339)
T 3j21_k 100 YKFLQQNRQP 109 (339)
T ss_dssp HHHHHHSCCC
T ss_pred HHHHHHcCCc
Confidence 9999999753
No 17
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=40.88 E-value=1.4e+02 Score=26.83 Aligned_cols=102 Identities=19% Similarity=0.248 Sum_probs=63.4
Q ss_pred cCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhc---cCCCCcEEEEcCCCHHHHHHHHHHc
Q 027977 98 GFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKV---AESLPRICFLSGLSGEEMMMFIEAF 174 (216)
Q Consensus 98 GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~---~~~~~r~vi~sGft~eEl~~~I~a~ 174 (216)
-|+.++..+|-+.|.++|++.+.+=+ |. .. +.|++.++. .....++..+.=.....++..+.++
T Consensus 30 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~--------p~---~~--~~d~e~v~~i~~~~~~~~i~~l~r~~~~di~~a~~al 96 (370)
T 3rmj_A 30 AMTKEEKIRVARQLEKLGVDIIEAGF--------AA---AS--PGDFEAVNAIAKTITKSTVCSLSRAIERDIRQAGEAV 96 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEE--------GG---GC--HHHHHHHHHHHTTCSSSEEEEEEESSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeC--------CC---CC--HHHHHHHHHHHHhCCCCeEEEEecCCHHHHHHHHHHH
Confidence 57899999999999999996554422 11 00 112222211 0112344444423567799999999
Q ss_pred ccCCCCCc-cEEEEccC----CCCCCHHHHHHHHHHHHHHhhc
Q 027977 175 PETGLEPA-VFAALVPN----SADKPLQELIEEVMGDHEMLTG 212 (216)
Q Consensus 175 k~~Gl~~~-ifAvlTPt----N~~W~l~eLieEL~~EHe~m~~ 212 (216)
+..|.+.+ +|..+.+. |.+++..+.++.+.+==+|.+.
T Consensus 97 ~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~ 139 (370)
T 3rmj_A 97 APAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIARE 139 (370)
T ss_dssp TTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred hhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99898755 46655553 7889999988887654445444
No 18
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=40.40 E-value=1e+02 Score=26.51 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=62.0
Q ss_pred ecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhc---cCCCCcEEEEcCCCHHHHHHHHHH
Q 027977 97 LGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKV---AESLPRICFLSGLSGEEMMMFIEA 173 (216)
Q Consensus 97 ~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~---~~~~~r~vi~sGft~eEl~~~I~a 173 (216)
.-|+.++..+|-+.|.+.|++.+.+=+ |.. ...+++.++. ....-++..+.--....++..+.+
T Consensus 22 ~~~~~~~K~~i~~~L~~~Gv~~IE~g~--------p~~-----~~~d~e~v~~i~~~~~~~~i~~l~~~~~~di~~a~~~ 88 (293)
T 3ewb_X 22 VNFDVKEKIQIALQLEKLGIDVIEAGF--------PIS-----SPGDFECVKAIAKAIKHCSVTGLARCVEGDIDRAEEA 88 (293)
T ss_dssp -CCCHHHHHHHHHHHHHHTCSEEEEEC--------GGG-----CHHHHHHHHHHHHHCCSSEEEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC--------CCC-----CccHHHHHHHHHHhcCCCEEEEEecCCHHHHHHHHHH
Confidence 457889999999999999995554321 110 0011111110 011234444443345679999999
Q ss_pred cccCCCCCc-cEEEEccC----CCCCCHHHHHHHHHHHHHHhhcC
Q 027977 174 FPETGLEPA-VFAALVPN----SADKPLQELIEEVMGDHEMLTGQ 213 (216)
Q Consensus 174 ~k~~Gl~~~-ifAvlTPt----N~~W~l~eLieEL~~EHe~m~~~ 213 (216)
++..|.+.+ +|..+.+. |.+++..+.++.+.+==+|.++.
T Consensus 89 ~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~ 133 (293)
T 3ewb_X 89 LKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQK 133 (293)
T ss_dssp HTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhC
Confidence 998887644 35444443 78999999988776655555543
No 19
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=39.64 E-value=1.4e+02 Score=24.95 Aligned_cols=83 Identities=10% Similarity=-0.022 Sum_probs=47.7
Q ss_pred CCCceEEEecCC----hHHHHHHHHHHHhcCCcceEEEEeCCC--chhchHHHHhcccccchhhhhccCCCCcEEEEcCC
Q 027977 89 FGPPALLLLGFK----VEEAVKIRQFLKELDGEFLEVIFCTED--MIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGL 162 (216)
Q Consensus 89 yGPpaILL~GF~----~EE~~kIR~lL~elg~e~vkVi~vt~e--~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGf 162 (216)
+|-.+|.++.-+ .+..+.+++.|.+.|++.+....++.. ++...+..+.. .....||+.+
T Consensus 141 ~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~-------------~~~dav~~~~- 206 (392)
T 3lkb_A 141 KKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQ-------------AGVEYVVHQN- 206 (392)
T ss_dssp CTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHH-------------TTCCEEEEES-
T ss_pred CCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHh-------------cCCCEEEEec-
Confidence 455666655432 345667888888888854433333322 22222222211 1234555555
Q ss_pred CHHHHHHHHHHcccCCCCCccEE
Q 027977 163 SGEEMMMFIEAFPETGLEPAVFA 185 (216)
Q Consensus 163 t~eEl~~~I~a~k~~Gl~~~ifA 185 (216)
...+...+++++++.|+..+++.
T Consensus 207 ~~~~a~~~~~~~~~~g~~~~~~~ 229 (392)
T 3lkb_A 207 VAGPVANILKDAKRLGLKMRHLG 229 (392)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CcchHHHHHHHHHHcCCCceEEE
Confidence 66778899999999999766543
No 20
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=38.83 E-value=66 Score=27.36 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=28.6
Q ss_pred EEEEcCCCH----HHHHHHHHHcccCCCCCccEEEEccCCCC
Q 027977 156 ICFLSGLSG----EEMMMFIEAFPETGLEPAVFAALVPNSAD 193 (216)
Q Consensus 156 ~vi~sGft~----eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~ 193 (216)
++=.|.|++ +|+...+..+.+.|. .++|-+++|+|.+
T Consensus 143 I~S~Hdf~~TP~~~el~~~~~~~~~~ga-DIvKia~~~~~~~ 183 (258)
T 4h3d_A 143 IISNHDFNKTPKKEEIVSRLCRMQELGA-DLPKIAVMPQNEK 183 (258)
T ss_dssp EEEEEESSCCCCHHHHHHHHHHHHHTTC-SEEEEEECCSSHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhCC-CEEEEEEccCCHH
Confidence 444566654 789999999999884 7889999998864
No 21
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=38.56 E-value=82 Score=25.04 Aligned_cols=114 Identities=11% Similarity=0.117 Sum_probs=62.4
Q ss_pred CCCceEEEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhch-HHHHhcccccchhhhh--------ccCCCCcEEEE
Q 027977 89 FGPPALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRS-LWEAMNTKQTNLEAVK--------VAESLPRICFL 159 (216)
Q Consensus 89 yGPpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~p-LGel~~~~~~d~e~~k--------~~~~~~r~vi~ 159 (216)
.+...|++++.+.+....+-+.+.+.|+ +|+.+....-... +.. +. ..++.... .+.+..++.++
T Consensus 68 ~~vdgiii~~~~~~~~~~~~~~~~~~~i---PvV~~~~~~~~~~~~~~-V~--~D~~~~g~~a~~~l~~~g~~~~~i~~i 141 (304)
T 3gbv_A 68 EQPDGVMFAPTVPQYTKGFTDALNELGI---PYIYIDSQIKDAPPLAF-FG--QNSHQSGYFAARMLMLLAVNDREIVIF 141 (304)
T ss_dssp TCCSEEEECCSSGGGTHHHHHHHHHHTC---CEEEESSCCTTSCCSEE-EE--CCHHHHHHHHHHHHHHHSTTCSEEEEE
T ss_pred cCCCEEEECCCChHHHHHHHHHHHHCCC---eEEEEeCCCCCCCceEE-Ee--cChHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3567899999876544444444555566 8888876543221 100 00 00111100 12124789888
Q ss_pred c----CC-----CHHHHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHHHHH
Q 027977 160 S----GL-----SGEEMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMGDHE 208 (216)
Q Consensus 160 s----Gf-----t~eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~EHe 208 (216)
. |- ..+.+.-+.+++++.|++..+..+.......-...+.++++.+.|.
T Consensus 142 ~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 199 (304)
T 3gbv_A 142 RKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHP 199 (304)
T ss_dssp EEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCT
T ss_pred EecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCC
Confidence 8 43 2355788889999988865443333222222345677777777653
No 22
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=37.84 E-value=1.9e+02 Score=26.22 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=63.6
Q ss_pred cCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhccc------c---cchhhhh-ccCCCCcEEEEcCC--CHH
Q 027977 98 GFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTK------Q---TNLEAVK-VAESLPRICFLSGL--SGE 165 (216)
Q Consensus 98 GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~------~---~d~e~~k-~~~~~~r~vi~sGf--t~e 165 (216)
|+..+.+..+++++++.|+.++ ++-+....+..+..-. - .+..-.+ .+....+++|=.|+ |-+
T Consensus 189 gl~~egl~~L~~~~~~~Gl~~~-----te~~d~~~~~~l~~~vd~lkIgs~~~~n~~LL~~~a~~gkPVilk~G~~~t~~ 263 (385)
T 3nvt_A 189 GLGLEGLKILKRVSDEYGLGVI-----SEIVTPADIEVALDYVDVIQIGARNMQNFELLKAAGRVDKPILLKRGLSATIE 263 (385)
T ss_dssp CCTHHHHHHHHHHHHHHTCEEE-----EECCSGGGHHHHTTTCSEEEECGGGTTCHHHHHHHHTSSSCEEEECCTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCEEE-----EecCCHHHHHHHHhhCCEEEECcccccCHHHHHHHHccCCcEEEecCCCCCHH
Confidence 6678999999999999998333 4444445555554310 0 0111000 12335678888888 779
Q ss_pred HHHHHHHHcccCCCCCccEE---EE-----ccCCCCCCHHHHHHH
Q 027977 166 EMMMFIEAFPETGLEPAVFA---AL-----VPNSADKPLQELIEE 202 (216)
Q Consensus 166 El~~~I~a~k~~Gl~~~ifA---vl-----TPtN~~W~l~eLieE 202 (216)
|+...+..+++.|-+.++.. +. ++++.+|.....+.+
T Consensus 264 e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~ 308 (385)
T 3nvt_A 264 EFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKK 308 (385)
T ss_dssp HHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHH
Confidence 99999999999998765432 22 456788886655554
No 23
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=37.45 E-value=75 Score=24.68 Aligned_cols=74 Identities=12% Similarity=-0.037 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHc----cc
Q 027977 101 VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAF----PE 176 (216)
Q Consensus 101 ~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~----k~ 176 (216)
.+-+..+-++|.+.+++++.++-+..- . .-.+-|||-||.+..++..+.+.+ |+
T Consensus 4 ~~l~~~i~~al~dkKa~DI~vlDv~~~-----------------s-----~~~DyfVIatg~S~rqv~Aiad~v~~~lk~ 61 (125)
T 2o5a_A 4 QELLQLAVNAVDDKKAEQVVALNMKGI-----------------S-----LIADFFLICHGNSEKQVQAIAHELKKVAQE 61 (125)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECBTT-----------------B-----C--CEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEcCCC-----------------C-----cccCEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 455677888899999988877754321 1 125789999999999987766554 55
Q ss_pred CCCCCccEEEEccCCCCCCHHH
Q 027977 177 TGLEPAVFAALVPNSADKPLQE 198 (216)
Q Consensus 177 ~Gl~~~ifAvlTPtN~~W~l~e 198 (216)
.|..+ ..+=--.+.+|.|.|
T Consensus 62 ~g~~~--~~~EG~~~~~WvLlD 81 (125)
T 2o5a_A 62 QGIEI--KRLEGYEQARWVLID 81 (125)
T ss_dssp TTCCC--CEEESTTTTSEEEEE
T ss_pred cCCcc--ccccCCCCCCEEEEe
Confidence 56543 233344566776543
No 24
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=36.93 E-value=1.1e+02 Score=27.89 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=64.7
Q ss_pred CceEEEe-cC--ChHHHHHHHHHHHhcCCcceEEEEeCC-----------Cc------hhchHHHHhccccc--ch----
Q 027977 91 PPALLLL-GF--KVEEAVKIRQFLKELDGEFLEVIFCTE-----------DM------IPRSLWEAMNTKQT--NL---- 144 (216)
Q Consensus 91 PpaILL~-GF--~~EE~~kIR~lL~elg~e~vkVi~vt~-----------e~------~~~pLGel~~~~~~--d~---- 144 (216)
++.|-++ |+ ...++..|+++|.++|+ ++..+.. .. -..++.++...... +.
T Consensus 169 ~~~VNii~G~~~~~~D~~eik~lL~~~Gi---~v~~~~d~s~~ld~~~~~~~~~~~~~gg~~~~ei~~~~~A~~ni~~~~ 245 (458)
T 3pdi_B 169 PRQVNVLCSANLTPGDLEYIAESIESFGL---RPLLIPDLSGSLDGHLDENRFNALTTGGLSVAELATAGQSVATLVVGQ 245 (458)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHTTTC---EEEEESCHHHHSSSCCCSSCCTTCCSCSBCHHHHGGGSSCSCEEEESG
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHcCC---EEEEecCccccccCccccccccccCCCCCCHHHHHhhhhCcEEEEecH
Confidence 6788888 97 58889999999999998 7777642 11 24567777663221 11
Q ss_pred --hh-hhc--cCCCCcEEEEcCCCH-HHHHHHHHHcccC-CCCCccEEEEccCCCCCCHHHHHHHHHHHHHHhhcC
Q 027977 145 --EA-VKV--AESLPRICFLSGLSG-EEMMMFIEAFPET-GLEPAVFAALVPNSADKPLQELIEEVMGDHEMLTGQ 213 (216)
Q Consensus 145 --e~-~k~--~~~~~r~vi~sGft~-eEl~~~I~a~k~~-Gl~~~ifAvlTPtN~~W~l~eLieEL~~EHe~m~~~ 213 (216)
.. .+. ...-.+.+.+.-+-| ++.+++|+.+.+. |.+ +|......-..+.+.+.+=|.+++|+
T Consensus 246 ~~~~~A~~Le~~~GiP~~~~~~p~G~~~T~~~l~~la~~~g~~-------~~~~i~~er~r~~~~~~d~~~~l~Gk 314 (458)
T 3pdi_B 246 SLAGAADALAERTGVPDRRFGMLYGLDAVDAWLMALAEISGNP-------VPDRYKRQRAQLQDAMLDTHFMLSSA 314 (458)
T ss_dssp GGHHHHHHHHHHSCCCEEEECCSCHHHHHHHHHHHHHHHHSSC-------CCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCEEecCCCcCHHHHHHHHHHHHHHHCCc-------hHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 00 000 012345666544444 5577777777664 542 11111111233555555567888775
No 25
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=36.13 E-value=70 Score=27.49 Aligned_cols=48 Identities=8% Similarity=0.160 Sum_probs=36.3
Q ss_pred CCCCCCceEEEe---cCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHH
Q 027977 86 DPTFGPPALLLL---GFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEA 136 (216)
Q Consensus 86 d~~yGPpaILL~---GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel 136 (216)
...|....+.++ +-+.+.+++++.++..+|. +++.++++.-+..+..+
T Consensus 165 ~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~---~v~~~~~~~hD~~~a~~ 215 (314)
T 3ggo_A 165 DNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGG---VVEYMSPELHDYVFGVV 215 (314)
T ss_dssp TTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTC---EEEECCHHHHHHHHHHH
T ss_pred hhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCC---EEEEcCHHHHHHHHHHH
Confidence 344444445555 3478899999999999998 88899999888776653
No 26
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=33.89 E-value=2.2e+02 Score=24.11 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=64.4
Q ss_pred cCChHHH-HHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHccc
Q 027977 98 GFKVEEA-VKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPE 176 (216)
Q Consensus 98 GF~~EE~-~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~ 176 (216)
+++.+.+ +.+.+-|+.||.+-+.+..+-.-+...++.+.+..-+.-.+ .+.-|.+=+|+|+..++.+++...++
T Consensus 96 ~~s~~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~al~~l~~-----~Gkir~iGvSn~~~~~l~~~~~~~~~ 170 (327)
T 3eau_A 96 GLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVIN-----QGMAMYWGTSRWSSMEIMEAYSVARQ 170 (327)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSCEEEEEESSCCTTSCHHHHHHHHHHHHH-----TTSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEEeCCCCCCCHHHHHHHHHHHHH-----cCCeeEEeecCCCHHHHHHHHHHHHH
Confidence 5665444 56888899999998988877555544455444432111111 34667888999999999999998887
Q ss_pred CCCCCccEEEEccCCCCCC--HHHHHHHHHHHH
Q 027977 177 TGLEPAVFAALVPNSADKP--LQELIEEVMGDH 207 (216)
Q Consensus 177 ~Gl~~~ifAvlTPtN~~W~--l~eLieEL~~EH 207 (216)
.|..+ +.++=.+-|.-+. ...-+-+..++|
T Consensus 171 ~~~~~-~~~~Q~~~~~~~~~~~~~~l~~~~~~~ 202 (327)
T 3eau_A 171 FNLIP-PICEQAEYHMFQREKVEVQLPELFHKI 202 (327)
T ss_dssp TTCCC-CCEEEEECBTTBCHHHHHHHHHHHHHH
T ss_pred cCCCC-ceeecccccccccchhHhhHHHHHHHc
Confidence 77532 2334445555433 222344555555
No 27
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=33.71 E-value=83 Score=24.41 Aligned_cols=77 Identities=14% Similarity=0.276 Sum_probs=48.4
Q ss_pred EEEecCC--hHHHHHHHHHHHhcCCcceEEEEeCC---------CchhchHH-HHhcccccchhhhhccCCCCcEEEEcC
Q 027977 94 LLLLGFK--VEEAVKIRQFLKELDGEFLEVIFCTE---------DMIPRSLW-EAMNTKQTNLEAVKVAESLPRICFLSG 161 (216)
Q Consensus 94 ILL~GF~--~EE~~kIR~lL~elg~e~vkVi~vt~---------e~~~~pLG-el~~~~~~d~e~~k~~~~~~r~vi~sG 161 (216)
...||.. .+..+++++.|...|. +++..+- ...+.-|. +++. .+...+.+||+||
T Consensus 51 ~~~Y~~~~~~~~~~~~~~~L~~~g~---~v~~~p~~~~~~~~~k~~~Dv~laiD~~~----------~a~~~d~~vLvSg 117 (165)
T 2qip_A 51 AKAYAIASNDPKQRQFHHILRGVGF---EVMLKPYIQRRDGSAKGDWDVGITLDAIE----------IAPDVDRVILVSG 117 (165)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTC---EEEECCCCCCSSCCCSCCCHHHHHHHHHH----------HGGGCSEEEEECC
T ss_pred EEEEEccCCchhHHHHHHHHHHCCc---EEEEEeeeeccCCccCCCccHHHHHHHHH----------hhccCCEEEEEEC
Confidence 3456653 2688999999999997 5553332 11111111 1111 1234788999999
Q ss_pred CCHHHHHHHHHHcccC-CCCCccEE
Q 027977 162 LSGEEMMMFIEAFPET-GLEPAVFA 185 (216)
Q Consensus 162 ft~eEl~~~I~a~k~~-Gl~~~ifA 185 (216)
++ ....++..+|+. |....+++
T Consensus 118 -D~-DF~plv~~lr~~~G~~V~v~g 140 (165)
T 2qip_A 118 -DG-DFSLLVERIQQRYNKKVTVYG 140 (165)
T ss_dssp -CG-GGHHHHHHHHHHHCCEEEEEE
T ss_pred -Ch-hHHHHHHHHHHHcCcEEEEEe
Confidence 55 699999999996 97554454
No 28
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.91 E-value=55 Score=23.93 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=28.0
Q ss_pred CCCCCceEEEecCChHHHHHHHHHHHhcCCcce
Q 027977 87 PTFGPPALLLLGFKVEEAVKIRQFLKELDGEFL 119 (216)
Q Consensus 87 ~~yGPpaILL~GF~~EE~~kIR~lL~elg~e~v 119 (216)
+.|-.-.|-+-||+.++...|++++..+|+.+.
T Consensus 11 ~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~ 43 (109)
T 2cou_A 11 PPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYL 43 (109)
T ss_dssp CTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCC
T ss_pred CcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEe
Confidence 356667888899999999999999999999544
No 29
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=32.47 E-value=1.9e+02 Score=26.04 Aligned_cols=89 Identities=10% Similarity=0.138 Sum_probs=49.5
Q ss_pred ceEEEecCChHHHHHH-HHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCC----CHHH
Q 027977 92 PALLLLGFKVEEAVKI-RQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGL----SGEE 166 (216)
Q Consensus 92 paILL~GF~~EE~~kI-R~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGf----t~eE 166 (216)
..++++|+..+++.+. .+.-..+|. ++.++.++....+-+.+.... .... ......++++.|- +.+.
T Consensus 57 ~i~vv~~~~~~~i~~~~~~~~~~~~~---~i~~~~q~~~lGTa~Av~~a~-~~l~----~~~~~~~lvl~gd~~l~~~~~ 128 (501)
T 3st8_A 57 RLIVVLGHDHQRIAPLVGELADTLGR---TIDVALQDRPLGTGHAVLCGL-SALP----DDYAGNVVVTSGDTPLLDADT 128 (501)
T ss_dssp EEEEEECTTHHHHHHHHHHHHHHHTS---CCEEEECSSCCCHHHHHHHHH-TTSC----TTCCSEEEEEETTCTTCCHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhcCC---cEEEEEcCCCCCcHHHHHHHH-HHhc----cccccceeeecCcceeecHHH
Confidence 4567789987766542 222334454 666666665555544433211 1111 0124557777763 3567
Q ss_pred HHHHHHHcccCCCCCccEEEEc
Q 027977 167 MMMFIEAFPETGLEPAVFAALV 188 (216)
Q Consensus 167 l~~~I~a~k~~Gl~~~ifAvlT 188 (216)
+..+++..++.+....+..+-+
T Consensus 129 ~~~l~~~h~~~~~~~ti~~~~~ 150 (501)
T 3st8_A 129 LADLIATHRAVSAAVTVLTTTL 150 (501)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEC
T ss_pred HHHHHHHHhhccccceEeeecc
Confidence 8899999888776544544443
No 30
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=32.40 E-value=1.7e+02 Score=26.02 Aligned_cols=81 Identities=10% Similarity=0.003 Sum_probs=57.0
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccc-cchhhhhccCCCCcEEEEcCCCHHHH
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQ-TNLEAVKVAESLPRICFLSGLSGEEM 167 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~-~d~e~~k~~~~~~r~vi~sGft~eEl 167 (216)
+.++++++ +..++..||+-|.+- + +++.+..-++..-++...+... ++++.....-.-+-.++|+.-+-.++
T Consensus 26 ~~v~vv~~~gl~v~ql~~LR~~lR~~-~---~~~V~KNTL~r~Al~~~~e~~~~~~le~L~~~L~G~~gl~FT~~dp~~v 101 (319)
T 3iz5_s 26 TKVLIAVADNVGSNQLQEIRKGLRGD-S---IVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEV 101 (319)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHHH-S---CEECCSTTTCCHHHHHHHSSSCCSSSSSSSCCCCTTEEEEEESSCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCC-c---EEEEEhHHHHHHHHhhchhhhccccHHHHHHHhcCCeEEEEECCChHHH
Confidence 46777766 699999999999863 4 5667777788888887654211 23443211122456789999999999
Q ss_pred HHHHHHccc
Q 027977 168 MMFIEAFPE 176 (216)
Q Consensus 168 ~~~I~a~k~ 176 (216)
.+++..++.
T Consensus 102 ~k~l~~~k~ 110 (319)
T 3iz5_s 102 REEVAKYKV 110 (319)
T ss_dssp HHHHHHSCE
T ss_pred HHHHHHccc
Confidence 999999874
No 31
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=32.29 E-value=2.1e+02 Score=23.52 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=54.1
Q ss_pred CCCceEEEecC----ChHHHHHHHHHHHhcCCcceEEEEeCC--CchhchHHHHhcccccchhhhhccCCCCcEEEEcCC
Q 027977 89 FGPPALLLLGF----KVEEAVKIRQFLKELDGEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGL 162 (216)
Q Consensus 89 yGPpaILL~GF----~~EE~~kIR~lL~elg~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGf 162 (216)
+|-.+|.+++- ..+..+.+++.+.+.|++.+....++. .++...+..+.. .....||+.+
T Consensus 139 ~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~-------------~~~d~v~~~~- 204 (364)
T 3lop_A 139 IGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLA-------------ADVQAIFLGA- 204 (364)
T ss_dssp TTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHH-------------SCCSEEEEES-
T ss_pred cCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHh-------------CCCCEEEEec-
Confidence 46555555443 245677888888888886554333332 233333333221 1234566544
Q ss_pred CHHHHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHH
Q 027977 163 SGEEMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEV 203 (216)
Q Consensus 163 t~eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL 203 (216)
+......+++++++.|+..+++. ...|...++++.+
T Consensus 205 ~~~~a~~~~~~~~~~g~~~~~i~-----~~~~~~~~~~~~~ 240 (364)
T 3lop_A 205 TAEPAAQFVRQYRARGGEAQLLG-----LSSIDPGILQKVA 240 (364)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEE-----CTTSCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEE-----eccCChHHHHHHh
Confidence 56678889999999988765332 1245555555443
No 32
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=31.69 E-value=2e+02 Score=23.74 Aligned_cols=81 Identities=12% Similarity=0.203 Sum_probs=54.4
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcc-cccchhhhhccCCCCcEEEEcCCCHHHH
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNT-KQTNLEAVKVAESLPRICFLSGLSGEEM 167 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~-~~~d~e~~k~~~~~~r~vi~sGft~eEl 167 (216)
+.++++++ +..++..||+-|.+- + +++.+..-.+..-++...+. -.++++.....-.-+-.++|+.-+-.++
T Consensus 20 ~~v~v~~~~gl~~~ql~~lR~~lr~~-~---~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G~~~l~Ft~~dp~~v 95 (213)
T 3jsy_A 20 PVVAIVDMMDVPAPQLQEIRDKIRDK-V---KLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPFKL 95 (213)
T ss_dssp SEEEEEECCSCCHHHHHHHHHHHTTT-E---EEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCSSEEEEEESSCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCC-C---EEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcCCeEEEEeCCCHHHH
Confidence 45677666 699999999999853 3 56666666666666655321 1134443322223467889999999999
Q ss_pred HHHHHHccc
Q 027977 168 MMFIEAFPE 176 (216)
Q Consensus 168 ~~~I~a~k~ 176 (216)
.+++..++.
T Consensus 96 ~k~l~~~~~ 104 (213)
T 3jsy_A 96 YKLLEENKS 104 (213)
T ss_dssp HHHHHHSCE
T ss_pred HHHHHHcCC
Confidence 999999874
No 33
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=30.84 E-value=1.9e+02 Score=25.02 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=57.4
Q ss_pred ChHHH-HHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcccCC
Q 027977 100 KVEEA-VKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETG 178 (216)
Q Consensus 100 ~~EE~-~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~~G 178 (216)
+.+.+ +.+.+-|+.||.+-+.+..+=.-+...++.+.+..-+.-.+ .+.-|.+=+|+|+.+++.+++...++.|
T Consensus 133 s~~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~aL~~l~~-----~Gkir~iGvSn~~~~~l~~~~~~~~~~~ 207 (353)
T 3erp_A 133 SRKYLIASLDQSLKRMGLEYVDIFYHHRPDPETPLKETMKALDHLVR-----HGKALYVGISNYPADLARQAIDILEDLG 207 (353)
T ss_dssp CHHHHHHHHHHHHHHHTCSCEEEEEECSCCTTSCHHHHHHHHHHHHH-----TTSEEEEEEESCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCeEeEEEecCCCCCCCHHHHHHHHHHHHH-----CCCccEEEecCCCHHHHHHHHHHHHHcC
Confidence 44443 45888899999998988887555544455444432111111 3467889999999999999999988877
Q ss_pred CCCccEEEEccCCCC
Q 027977 179 LEPAVFAALVPNSAD 193 (216)
Q Consensus 179 l~~~ifAvlTPtN~~ 193 (216)
.+ +.++-.+-|.-
T Consensus 208 ~~--~~~~Q~~~~~~ 220 (353)
T 3erp_A 208 TP--CLIHQPKYSLF 220 (353)
T ss_dssp CC--EEEEECBCBTT
T ss_pred CC--eEEeecccccc
Confidence 43 33444555543
No 34
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=30.77 E-value=1.2e+02 Score=20.19 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=41.0
Q ss_pred ceEEEecCC-hHHHHHHHHHHHhcCCcceEEEEeCCCchh---chHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHH
Q 027977 92 PALLLLGFK-VEEAVKIRQFLKELDGEFLEVIFCTEDMIP---RSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEM 167 (216)
Q Consensus 92 paILL~GF~-~EE~~kIR~lL~elg~e~vkVi~vt~e~~~---~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl 167 (216)
.+|.+|+.+ =.--++++.+|.++|+++ ..+.++...-. ....+++... ....++.-....+ .+.||+.++|
T Consensus 12 ~~v~ly~~~~Cp~C~~~~~~L~~~gi~~-~~~~v~~~~~~~~~~~~~~l~~~~--g~~~vP~l~~~g~--~i~G~~~~~l 86 (92)
T 3ic4_A 12 AEVLMYGLSTCPHCKRTLEFLKREGVDF-EVIWIDKLEGEERKKVIEKVHSIS--GSYSVPVVVKGDK--HVLGYNEEKL 86 (92)
T ss_dssp SSSEEEECTTCHHHHHHHHHHHHHTCCC-EEEEGGGCCHHHHHHHHHHHHHHH--SSSCSCEEEETTE--EEESCCHHHH
T ss_pred ceEEEEECCCChHHHHHHHHHHHcCCCc-EEEEeeeCCccchHHHHHHHHHhc--CCCCcCEEEECCE--EEeCCCHHHH
Confidence 347778774 567788999999999864 44555432211 1122232210 0111111000112 4679999999
Q ss_pred HHHHH
Q 027977 168 MMFIE 172 (216)
Q Consensus 168 ~~~I~ 172 (216)
.++|.
T Consensus 87 ~~~l~ 91 (92)
T 3ic4_A 87 KELIR 91 (92)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 35
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=30.69 E-value=1.3e+02 Score=21.33 Aligned_cols=76 Identities=9% Similarity=-0.010 Sum_probs=38.2
Q ss_pred ceEEEecCC-hHHHHHHHHHHHhcCCcceEEEEeCCCc-hhchHHHHhcccccchhhhhc-cCCCCcEEEEcCCCHHHHH
Q 027977 92 PALLLLGFK-VEEAVKIRQFLKELDGEFLEVIFCTEDM-IPRSLWEAMNTKQTNLEAVKV-AESLPRICFLSGLSGEEMM 168 (216)
Q Consensus 92 paILL~GF~-~EE~~kIR~lL~elg~e~vkVi~vt~e~-~~~pLGel~~~~~~d~e~~k~-~~~~~r~vi~sGft~eEl~ 168 (216)
.+|-+|+-+ =.-=.+.|++|++.|+++. .+-|+++. ..+-+.++.. ....++. .-+... ++.||+.+||.
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~-~idi~~d~~~~~~~~~~~~----G~~tVP~I~i~Dg~--~l~~~~~~el~ 76 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYD-EVDIEHNRAAAEFVGSVNG----GNRTVPTVKFADGS--TLTNPSADEVK 76 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCE-EEETTTCHHHHHHHHHHSS----SSSCSCEEEETTSC--EEESCCHHHHH
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceE-EEEcCCCHHHHHHHHHHcC----CCCEeCEEEEeCCE--EEeCCCHHHHH
Confidence 456666663 2334577889999999665 33444322 2222222211 1111111 000111 35789999888
Q ss_pred HHHHHc
Q 027977 169 MFIEAF 174 (216)
Q Consensus 169 ~~I~a~ 174 (216)
+.|..+
T Consensus 77 ~~L~el 82 (92)
T 2lqo_A 77 AKLVKI 82 (92)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766654
No 36
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=30.47 E-value=69 Score=24.52 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCcccccCCccccCCCCCCCCCCceEEEecC-----ChHHHHHHHHHHHhcCCcceEEEEeCC
Q 027977 60 PTPCASAEGLPGELTEDSKFVPLNADDPTFGPPALLLLGF-----KVEEAVKIRQFLKELDGEFLEVIFCTE 126 (216)
Q Consensus 60 ~~~~~~~~~~~~~~~~d~~f~~~~~dd~~yGPpaILL~GF-----~~EE~~kIR~lL~elg~e~vkVi~vt~ 126 (216)
-+.+.++..+|.=...|.+-..+.-++ .-|++.||.+.. -..+...++++..+++...+.|+.|+-
T Consensus 17 ~~~~~~~~~~p~f~l~d~~G~~~~l~~-~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~ 87 (187)
T 3dwv_A 17 RKKMSAASSIFDFEVLDADHKPYNLVQ-HKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPS 87 (187)
T ss_dssp ---CTTCCSGGGSCCBBTTSCBCCGGG-GTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEB
T ss_pred hhhhcCCCccCCeEEEcCCCCEeeHHH-hCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEEC
Confidence 344556667776555554444444232 347777776443 478888888888777655678888864
No 37
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=30.11 E-value=71 Score=26.36 Aligned_cols=30 Identities=23% Similarity=0.554 Sum_probs=19.6
Q ss_pred CcEEEEcCCCHHHHHHHHHHcccCCCCCccE
Q 027977 154 PRICFLSGLSGEEMMMFIEAFPETGLEPAVF 184 (216)
Q Consensus 154 ~r~vi~sGft~eEl~~~I~a~k~~Gl~~~if 184 (216)
...||+.+ +......+++++++.|+..+++
T Consensus 215 ~dav~~~~-~~~~a~~~~~~~~~~g~~~~~~ 244 (386)
T 3sg0_A 215 PDAVFIAS-AGTPAVLPQKALRERGFKGAIY 244 (386)
T ss_dssp CSEEEEEC-CSGGGHHHHHHHHHTTCCSEEE
T ss_pred CCEEEEec-CcchHHHHHHHHHHcCCCCcEE
Confidence 34565555 3445678888888888875543
No 38
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=29.93 E-value=2.2e+02 Score=24.15 Aligned_cols=89 Identities=12% Similarity=-0.013 Sum_probs=57.1
Q ss_pred cCChHH-HHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHccc
Q 027977 98 GFKVEE-AVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPE 176 (216)
Q Consensus 98 GF~~EE-~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~ 176 (216)
+++.+. .+.+.+-|..||.+-|.+..+-.-+...++.+.+..-+.-.+ .+.-|.+=+|+|+..++.+++...++
T Consensus 81 ~~~~~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~~~~~e~~~al~~l~~-----~Gkir~iGvSn~~~~~l~~~~~~~~~ 155 (327)
T 1gve_A 81 TLKPADVRFQLETSLKRLQCPRVDLFYLHFPDHGTPIEETLQACHQLHQ-----EGKFVELGLSNYVSWEVAEICTLCKK 155 (327)
T ss_dssp CSSHHHHHHHHHHHHHHTTCSCEEEEEECSCCTTSCHHHHHHHHHHHHH-----TTSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCeEeEEEecCCCCCCCHHHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHH
Confidence 455443 456888899999998888877544444444444431111111 34677888999999999999998888
Q ss_pred CCCCCccEEEEccCCC
Q 027977 177 TGLEPAVFAALVPNSA 192 (216)
Q Consensus 177 ~Gl~~~ifAvlTPtN~ 192 (216)
.|+.++ .++-++-|.
T Consensus 156 ~g~~~~-~~~Q~~~~~ 170 (327)
T 1gve_A 156 NGWIMP-TVYQGMYNA 170 (327)
T ss_dssp HTCCCE-EEEEEECBT
T ss_pred cCCCCe-EEEeccCcc
Confidence 775332 233444443
No 39
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=28.87 E-value=1e+02 Score=19.33 Aligned_cols=72 Identities=13% Similarity=0.054 Sum_probs=37.4
Q ss_pred EEEecCC-hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHH
Q 027977 94 LLLLGFK-VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIE 172 (216)
Q Consensus 94 ILL~GF~-~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~ 172 (216)
|.+|+.. =.--.+++.+|.++|+++. .+.++++. .+.+.+.. -....++.-....+ .+.|++.+++.++|+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~~i~~~-~~di~~~~---~~~~~~~~--~~~~~vP~l~~~g~--~~~g~~~~~l~~~l~ 74 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRAGLAYN-TVDISLDD---EARDYVMA--LGYVQAPVVEVDGE--HWSGFRPERIKQLQA 74 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCE-EEETTTCH---HHHHHHHH--TTCBCCCEEEETTE--EEESCCHHHHHHHHC
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcE-EEECCCCH---HHHHHHHH--cCCCccCEEEECCe--EEcCCCHHHHHHHHh
Confidence 5677764 4566788899999988654 34454432 11121110 01111111000112 367999999988875
Q ss_pred H
Q 027977 173 A 173 (216)
Q Consensus 173 a 173 (216)
|
T Consensus 75 ~ 75 (75)
T 1r7h_A 75 A 75 (75)
T ss_dssp -
T ss_pred C
Confidence 4
No 40
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=28.86 E-value=1.6e+02 Score=23.02 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHc----cc
Q 027977 101 VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAF----PE 176 (216)
Q Consensus 101 ~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~----k~ 176 (216)
.+-+..+-++|.+.+++++.++-++.- . .-.+-|||-||.+..++..+.+.+ |+
T Consensus 4 ~~l~~~i~~al~dkKa~DI~vlDv~~~-----------------s-----~~~DyfVIaTg~S~rqv~Aiad~v~~~lk~ 61 (130)
T 2id1_A 4 QEISKLAIEALEDIKGKDIIELDTSKL-----------------T-----SLFQRMIVATGDSNRQVKALANSVQVKLKE 61 (130)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEGGGT-----------------C-----SSCSEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEcCCC-----------------C-----cccCEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 345677788899999988877744211 1 226789999999999987665544 55
Q ss_pred CCCCCccEEEEccCCCCCCHHH
Q 027977 177 TGLEPAVFAALVPNSADKPLQE 198 (216)
Q Consensus 177 ~Gl~~~ifAvlTPtN~~W~l~e 198 (216)
.|..+. .+=--.+.+|.|.|
T Consensus 62 ~g~~~~--~~EG~~~~~WvLlD 81 (130)
T 2id1_A 62 AGVDIV--GSEGHESGEWVLVD 81 (130)
T ss_dssp TTCCCC--BCCSTTTSSEEEEE
T ss_pred cCCcCc--cccCCCCCCEEEEe
Confidence 666432 12123466776544
No 41
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=28.27 E-value=2.1e+02 Score=24.83 Aligned_cols=89 Identities=13% Similarity=0.013 Sum_probs=57.0
Q ss_pred cCChHH-HHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHccc
Q 027977 98 GFKVEE-AVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPE 176 (216)
Q Consensus 98 GF~~EE-~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~ 176 (216)
+++.+. .+.+.+-|..||.+-|.+..+-.-+...++.+.+..-+.-.+ .+.-|.+=+|+|+..++.+++...++
T Consensus 114 ~~~~~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~aL~~l~~-----~Gkir~iGvSn~~~~~l~~~~~~~~~ 188 (360)
T 2bp1_A 114 SLKPDSVRSQLETSLKRLQCPQVDLFYLHAPDHGTPVEETLHACQRLHQ-----EGKFVELGLSNYASWEVAEICTLCKS 188 (360)
T ss_dssp CSSHHHHHHHHHHHHHHHTCSCEEEEEECSCCTTSCHHHHHHHHHHHHH-----TTSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEeEEEecCCCCCCCHHHHHHHHHHHHH-----CCCccEEEEeCCCHHHHHHHHHHHHH
Confidence 455444 456888899999998888877544433444444331111111 34677888999999999999999888
Q ss_pred CCCCCccEEEEccCCC
Q 027977 177 TGLEPAVFAALVPNSA 192 (216)
Q Consensus 177 ~Gl~~~ifAvlTPtN~ 192 (216)
.|+.++ .++-.+-|.
T Consensus 189 ~g~~~~-~~~Q~~yn~ 203 (360)
T 2bp1_A 189 NGWILP-TVYQGMYNA 203 (360)
T ss_dssp HTCCCE-EEEEEECBT
T ss_pred cCCCCc-eEEeeccch
Confidence 775332 333444444
No 42
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=28.12 E-value=1.1e+02 Score=20.35 Aligned_cols=33 Identities=15% Similarity=0.031 Sum_probs=26.2
Q ss_pred CCceEEEecCChHHHHHHHHHHHhcCCcceEEEEeC
Q 027977 90 GPPALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCT 125 (216)
Q Consensus 90 GPpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt 125 (216)
|+..||++.=+......++.+|...|. ++..++
T Consensus 4 m~~~ilivdd~~~~~~~l~~~L~~~g~---~v~~~~ 36 (127)
T 2gkg_A 4 MSKKILIVESDTALSATLRSALEGRGF---TVDETT 36 (127)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHTC---EEEEEC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCc---eEEEec
Confidence 567899999999999999999999877 565554
No 43
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=27.99 E-value=60 Score=22.41 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=28.5
Q ss_pred HHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHH-HHHHHHh
Q 027977 166 EMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEV-MGDHEML 210 (216)
Q Consensus 166 El~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL-~~EHe~m 210 (216)
-...|++.+++.++ +.+|+..+.+.+| .+|-+|-
T Consensus 5 ae~aF~~lL~~~~V-----------~s~wsweqamr~i~i~DPrY~ 39 (59)
T 2b7e_A 5 AEKEFITMLKENQV-----------DSTWSFSRIISELGTRDPRYW 39 (59)
T ss_dssp HHHHHHHHHHHTTC-----------CSSCCHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHcCC-----------CCCCcHHHHHHHhccCCCccc
Confidence 36788999999887 5689999999999 8887774
No 44
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=27.66 E-value=19 Score=26.58 Aligned_cols=21 Identities=5% Similarity=-0.105 Sum_probs=18.9
Q ss_pred EcCCCHHHHHHHHHHcccCCC
Q 027977 159 LSGLSGEEMMMFIEAFPETGL 179 (216)
Q Consensus 159 ~sGft~eEl~~~I~a~k~~Gl 179 (216)
.+|++..|++++|+.+|+.|.
T Consensus 43 ~~GvdKKeVdKaik~LKkEgk 63 (80)
T 2lnb_A 43 ECQAPKRELNQVLYRMKKELK 63 (80)
T ss_dssp HHTSCHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHHHHHHHcCC
Confidence 478999999999999999875
No 45
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=26.70 E-value=1.7e+02 Score=25.78 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=50.7
Q ss_pred ceEEEecC---ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHH
Q 027977 92 PALLLLGF---KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMM 168 (216)
Q Consensus 92 paILL~GF---~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~ 168 (216)
+.++++++ +..++..||+-|.+-+ +++.+..-++..-++..... .++++.....-.-+-.++|+.-+-.++.
T Consensus 23 ~~v~vv~~~gl~v~ql~~LR~~lR~~~----~~~V~KNTL~r~Al~~~~~~-~~~le~L~~~L~G~~gl~Ft~~dp~~v~ 97 (312)
T 3u5i_q 23 KSLFVVGVDNVSSQQMHEVRKELRGRA----VVLMGKNTMVRRAIRGFLSD-LPDFEKLLPFVKGNVGFVFTNEPLTEIK 97 (312)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSSSC----EEEECCHHHHHHHHHTTSSS-SCGGGGTGGGCCSSEEEEEESSCHHHHH
T ss_pred CEEEEEecCCCCHHHHHHHHHHHhcCc----eEEEeehHHHHHHHhhCccc-ccChHHHHHhccCCEEEEEECCCHHHHH
Confidence 35677655 6999999999998653 44444444444444432221 1344433222224668899998999999
Q ss_pred HHHHHccc
Q 027977 169 MFIEAFPE 176 (216)
Q Consensus 169 ~~I~a~k~ 176 (216)
+++..++.
T Consensus 98 k~l~~~k~ 105 (312)
T 3u5i_q 98 NVIVSNRV 105 (312)
T ss_dssp HHHHTSSC
T ss_pred HHHHhccC
Confidence 99998874
No 46
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=26.21 E-value=79 Score=24.01 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=48.7
Q ss_pred CCC-CceEEEecCChHH---HHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCC
Q 027977 88 TFG-PPALLLLGFKVEE---AVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLS 163 (216)
Q Consensus 88 ~yG-PpaILL~GF~~EE---~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft 163 (216)
.|- |..|.++|.+... -.++-+.|.+.|. +|..+++.. . ++.+ .+-+....+......++++. ..
T Consensus 18 ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G~---~v~~Vnp~~-~----~i~G--~~~y~sl~~l~~~vDlvvi~-vp 86 (144)
T 2d59_A 18 ILTRYKKIALVGASPKPERDANIVMKYLLEHGY---DVYPVNPKY-E----EVLG--RKCYPSVLDIPDKIEVVDLF-VK 86 (144)
T ss_dssp HHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECTTC-S----EETT--EECBSSGGGCSSCCSEEEEC-SC
T ss_pred HHcCCCEEEEEccCCCCCchHHHHHHHHHHCCC---EEEEECCCC-C----eECC--eeccCCHHHcCCCCCEEEEE-eC
Confidence 454 7899999996322 2244445666676 688888763 1 2223 22222222222234455554 56
Q ss_pred HHHHHHHHHHcccCCCCC
Q 027977 164 GEEMMMFIEAFPETGLEP 181 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~ 181 (216)
.+...++++.+-+.|.+.
T Consensus 87 ~~~~~~vv~~~~~~gi~~ 104 (144)
T 2d59_A 87 PKLTMEYVEQAIKKGAKV 104 (144)
T ss_dssp HHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHcCCCE
Confidence 677888888887888753
No 47
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=26.19 E-value=2.9e+02 Score=24.79 Aligned_cols=101 Identities=14% Similarity=0.136 Sum_probs=60.6
Q ss_pred cCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcc------cc---cchhhhh-ccCCCCcEEEEcCCC--HH
Q 027977 98 GFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNT------KQ---TNLEAVK-VAESLPRICFLSGLS--GE 165 (216)
Q Consensus 98 GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~------~~---~d~e~~k-~~~~~~r~vi~sGft--~e 165 (216)
|+..+.+..+++++.++|+.++ ++-+-...+.++..- .- .+..-.+ .+....+++|=.|++ -+
T Consensus 153 glg~egl~~l~~~~~e~Gl~~~-----te~~d~~~~~~l~~~vd~lkIgAr~~~n~~LL~~va~~~kPVilk~G~~~tl~ 227 (350)
T 1vr6_A 153 GLGEKGLEYLREAADKYGMYVV-----TEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIE 227 (350)
T ss_dssp CCTHHHHHHHHHHHHHHTCEEE-----EECSSGGGHHHHHHHCSEEEECGGGTTCHHHHHHHHTTCSCEEEECCTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCcEE-----EEeCCHHHHHHHHHhCCEEEECcccccCHHHHHHHHccCCcEEEcCCCCCCHH
Confidence 3358999999999999998333 333333444444321 00 1111000 133357788888984 59
Q ss_pred HHHHHHHHcccCCCCCccEE---EE-----ccCCCCCCHHHHHHHH
Q 027977 166 EMMMFIEAFPETGLEPAVFA---AL-----VPNSADKPLQELIEEV 203 (216)
Q Consensus 166 El~~~I~a~k~~Gl~~~ifA---vl-----TPtN~~W~l~eLieEL 203 (216)
|+...+..+++.|-+.++.. +. ++++.++..-..+++.
T Consensus 228 ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vdl~ai~~lk~~ 273 (350)
T 1vr6_A 228 EFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKE 273 (350)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhhHHHHHHHHHh
Confidence 99999999999998766654 21 2344566655555553
No 48
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=26.00 E-value=1.6e+02 Score=24.69 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=46.9
Q ss_pred CCCceEEEecC-----ChHHHHHHHHHHHhcCCcceEEEEeCCC--chhchHHH--HhcccccchhhhhccCCCCcEEEE
Q 027977 89 FGPPALLLLGF-----KVEEAVKIRQFLKELDGEFLEVIFCTED--MIPRSLWE--AMNTKQTNLEAVKVAESLPRICFL 159 (216)
Q Consensus 89 yGPpaILL~GF-----~~EE~~kIR~lL~elg~e~vkVi~vt~e--~~~~pLGe--l~~~~~~d~e~~k~~~~~~r~vi~ 159 (216)
||-.+|.++.- ..+..+.+++.+.+.|++.+....++.. ++...+.. +.. ....+||
T Consensus 139 ~g~~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~~-------------~~~dav~- 204 (391)
T 3eaf_A 139 FGQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREMLA-------------ADPDYVW- 204 (391)
T ss_dssp HCSEEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHT-------------TCCSEEE-
T ss_pred cCCCEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHHH-------------cCCCEEE-
Confidence 46566555433 2456677888888888744433333322 22222222 211 1233444
Q ss_pred cCCCHHHHHHHHHHcccCCCCCccEE
Q 027977 160 SGLSGEEMMMFIEAFPETGLEPAVFA 185 (216)
Q Consensus 160 sGft~eEl~~~I~a~k~~Gl~~~ifA 185 (216)
...+..+...+++++++.|+..+++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (391)
T 3eaf_A 205 CGNTISSCSLLGRAMAKVGLDAFLLT 230 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EecCcHHHHHHHHHHHHCCCCceEEE
Confidence 45566788899999999999766543
No 49
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=25.20 E-value=2.9e+02 Score=22.85 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=45.9
Q ss_pred CCceEEEecCC----hHHHHHHHHHHHhcCCcceEEEEeC--CCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCC
Q 027977 90 GPPALLLLGFK----VEEAVKIRQFLKELDGEFLEVIFCT--EDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLS 163 (216)
Q Consensus 90 GPpaILL~GF~----~EE~~kIR~lL~elg~e~vkVi~vt--~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft 163 (216)
|-.+|.++.-+ .+..+.+++.+...|++.+....++ ..++...+..+.. ....+|++. .+
T Consensus 141 g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~-------------~~~d~v~~~-~~ 206 (379)
T 3n0w_A 141 GYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFETQDFSSYLLQAKA-------------SGAQLIVST-SG 206 (379)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCCCHHHHHHHHH-------------HTCSEEEEC-CC
T ss_pred CCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCHHHHHHHHHH-------------CCCCEEEEe-cc
Confidence 55555555432 4466777888888887544333333 2233333333321 023455554 45
Q ss_pred HHHHHHHHHHcccCCCCCc
Q 027977 164 GEEMMMFIEAFPETGLEPA 182 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~~ 182 (216)
..+...+++.+++.|+..+
T Consensus 207 ~~~~~~~~~~~~~~g~~~~ 225 (379)
T 3n0w_A 207 GAANINIMKQAREFGLPSK 225 (379)
T ss_dssp HHHHHHHHHHHHHTTCSCS
T ss_pred cchHHHHHHHHHHcCCCCC
Confidence 6778889999999999765
No 50
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=24.81 E-value=48 Score=25.29 Aligned_cols=44 Identities=9% Similarity=0.158 Sum_probs=35.0
Q ss_pred CCCCCCCCCCceEEEecCC-hHHHHHHHHHHHhcCCcceEEEEeCCC
Q 027977 82 LNADDPTFGPPALLLLGFK-VEEAVKIRQFLKELDGEFLEVIFCTED 127 (216)
Q Consensus 82 ~~~dd~~yGPpaILL~GF~-~EE~~kIR~lL~elg~e~vkVi~vt~e 127 (216)
+...|+.||.+-||.++|. .=+..-|.++..+.|+ |.|..|+.-
T Consensus 6 l~g~d~~p~r~HVf~l~FP~ewKt~DI~~lFs~fgg--v~I~WidDT 50 (100)
T 1whv_A 6 SGGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGN--IQISWIDDT 50 (100)
T ss_dssp CCCSCCCCCCCSEEEEECCTTCCHHHHHHHHTTTCS--CCCEEEETT
T ss_pred cCCCCCCCCCCeEEEEeCChhhhhHHHHHHhhccCC--EEEEEEcCC
Confidence 4567899999999999995 5577788889999874 777777643
No 51
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=23.95 E-value=3.3e+02 Score=23.02 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=55.3
Q ss_pred cCChHH-HHHHHHHHHhcCCcceEEEEeCCC---------------ch--hchHHHHhcccccchhhhhccCCCCcEEEE
Q 027977 98 GFKVEE-AVKIRQFLKELDGEFLEVIFCTED---------------MI--PRSLWEAMNTKQTNLEAVKVAESLPRICFL 159 (216)
Q Consensus 98 GF~~EE-~~kIR~lL~elg~e~vkVi~vt~e---------------~~--~~pLGel~~~~~~d~e~~k~~~~~~r~vi~ 159 (216)
+++.+. .+.+.+-|..||.+-|.+..+=.- +. ..++.+.+..-+.-.+ .+.-|.+=+
T Consensus 104 ~~~~~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~~~~~~~~~~~~~d~~~~~~~~e~~~al~~l~~-----~Gkir~iGv 178 (346)
T 1lqa_A 104 ALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQR-----AGKIRYIGV 178 (346)
T ss_dssp CSSHHHHHHHHHHHHHHHTSSCEEEEEECSCSSCCSCTTCCSCCCCSSCCSSCHHHHHHHHHHHHH-----TTSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCceeEEEecCccccccccccccccccccccCCCHHHHHHHHHHHHH-----cCCeEEEEe
Confidence 466444 456888899999998888765322 11 2334443331111111 346778889
Q ss_pred cCCCHHHHHHHHHHcccCCCCCccEEEEccCCCC
Q 027977 160 SGLSGEEMMMFIEAFPETGLEPAVFAALVPNSAD 193 (216)
Q Consensus 160 sGft~eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~ 193 (216)
|+|+..+|.+++...+..|+.+ +.++-++-|.-
T Consensus 179 Sn~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~~l~ 211 (346)
T 1lqa_A 179 SNETAFGVMRYLHLADKHDLPR-IVTIQNPYSLL 211 (346)
T ss_dssp ESCCHHHHHHHHHHHHHHTCCC-CCEEEEECBTT
T ss_pred cCCCHHHHHHHHHHHHHcCCCC-ceEEeccCChh
Confidence 9999999999998888777633 33444555543
No 52
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=22.85 E-value=46 Score=26.99 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=29.2
Q ss_pred cEEEEcCCCHHHHHHHHHHcccCCCCCc-------cEEEEccCCC
Q 027977 155 RICFLSGLSGEEMMMFIEAFPETGLEPA-------VFAALVPNSA 192 (216)
Q Consensus 155 r~vi~sGft~eEl~~~I~a~k~~Gl~~~-------ifAvlTPtN~ 192 (216)
+..+|+|++.++..+++..+.+.|++.. -+++++|.+.
T Consensus 2 ~~~Ly~~L~~~da~~i~~~L~~~gI~~~y~~~~~g~~~I~Vp~~~ 46 (171)
T 1yj7_A 2 KEQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVAAAD 46 (171)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHTTCCCEEEECTTSCEEEEEEGGG
T ss_pred CccccCCCCHHHHHHHHHHHHHcCCCCceEECCCCCEEEEeCHHH
Confidence 3578999999999999999999888311 2477777763
No 53
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=22.48 E-value=51 Score=26.64 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCHHHHHHHHHHcccC
Q 027977 153 LPRICFLSGLSGEEMMMFIEAFPET 177 (216)
Q Consensus 153 ~~r~vi~sGft~eEl~~~I~a~k~~ 177 (216)
..+++++|||+.++-..+.+.+++.
T Consensus 10 ~~~~~~~sgl~~~~~~~l~~~i~~l 34 (199)
T 3u3z_A 10 PTRTLVMTSMPSEKQNVVIQVVDKL 34 (199)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHHc
Confidence 6789999999999988777777776
No 54
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=22.26 E-value=3.4e+02 Score=24.82 Aligned_cols=82 Identities=15% Similarity=0.078 Sum_probs=56.1
Q ss_pred ecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcc--cc--------cchhhhh-ccCCCCcEEEEcCCCH-
Q 027977 97 LGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNT--KQ--------TNLEAVK-VAESLPRICFLSGLSG- 164 (216)
Q Consensus 97 ~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~--~~--------~d~e~~k-~~~~~~r~vi~sGft~- 164 (216)
++|..|....|++.+++.|+.++ ++-+-...+..+..- +- -++.-.+ .+..-.++++=+||+.
T Consensus 96 ~~l~~e~~~~L~~~~~~~Gi~~~-----stpfD~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~~gKPViLStGmaTl 170 (385)
T 1vli_A 96 MEMPAEWILPLLDYCREKQVIFL-----STVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFSTAGAEI 170 (385)
T ss_dssp BSSCGGGHHHHHHHHHHTTCEEE-----CBCCSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTCCH
T ss_pred cCCCHHHHHHHHHHHHHcCCcEE-----EccCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCCCCH
Confidence 36889999999999999998433 666666666666431 00 0111000 1333678999999974
Q ss_pred HHHHHHHHHcccCCCCCcc
Q 027977 165 EEMMMFIEAFPETGLEPAV 183 (216)
Q Consensus 165 eEl~~~I~a~k~~Gl~~~i 183 (216)
+|+.+.+..+++.|-+.++
T Consensus 171 ~Ei~~Ave~i~~~Gn~~ii 189 (385)
T 1vli_A 171 SDVHEAWRTIRAEGNNQIA 189 (385)
T ss_dssp HHHHHHHHHHHTTTCCCEE
T ss_pred HHHHHHHHHHHHCCCCcEE
Confidence 8899999999999876554
No 55
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=22.25 E-value=3.3e+02 Score=22.41 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=46.7
Q ss_pred CCceEEEecCC----hHHHHHHHHHHHhcCCcceEEEEeCC--CchhchHHHHhcccccchhhhhccCCCCcEEEEcCCC
Q 027977 90 GPPALLLLGFK----VEEAVKIRQFLKELDGEFLEVIFCTE--DMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLS 163 (216)
Q Consensus 90 GPpaILL~GF~----~EE~~kIR~lL~elg~e~vkVi~vt~--e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft 163 (216)
|-.+|.++.-+ .+..+.+++.+.+.|++.+....++. .++...+..+.. ....+|++.+ +
T Consensus 139 g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~-------------~~~d~v~~~~-~ 204 (375)
T 3i09_A 139 GGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQS-------------SKAQILGLAN-A 204 (375)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHH-------------TCCSEEEEEC-C
T ss_pred CCceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCCccHHHHHHHHHh-------------CCCCEEEEec-C
Confidence 55555555432 44677788888888885544333332 233333333221 1234565554 5
Q ss_pred HHHHHHHHHHcccCCCCCc
Q 027977 164 GEEMMMFIEAFPETGLEPA 182 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~~ 182 (216)
..+...+++++++.|+..+
T Consensus 205 ~~~~~~~~~~~~~~g~~~~ 223 (375)
T 3i09_A 205 GGDTVNAIKAAKEFGITKT 223 (375)
T ss_dssp HHHHHHHHHHHHHTTGGGT
T ss_pred chhHHHHHHHHHHcCCCcC
Confidence 6677889999999998765
No 56
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=22.17 E-value=1.3e+02 Score=21.72 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=25.4
Q ss_pred CCceEEEecCChHHHHHHHHHHHhcCC
Q 027977 90 GPPALLLLGFKVEEAVKIRQFLKELDG 116 (216)
Q Consensus 90 GPpaILL~GF~~EE~~kIR~lL~elg~ 116 (216)
+-|.++--|.+++|..+|+.-|.+.|+
T Consensus 43 ~~P~~iKe~vsKeeAe~ik~~Le~aGA 69 (74)
T 1ctf_A 43 SAPAALKEGVSKDDAEALKKALEEAGA 69 (74)
T ss_dssp TCSEEEEEEECHHHHHHHHHHHHHHTC
T ss_pred hCcHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 568999999999999999999999998
No 57
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=22.08 E-value=1.5e+02 Score=23.66 Aligned_cols=109 Identities=9% Similarity=0.024 Sum_probs=54.7
Q ss_pred CCceEEEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhch-HHHHhcccccchhhhh--------ccCCCCcEEEEc
Q 027977 90 GPPALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRS-LWEAMNTKQTNLEAVK--------VAESLPRICFLS 160 (216)
Q Consensus 90 GPpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~p-LGel~~~~~~d~e~~k--------~~~~~~r~vi~s 160 (216)
+...|++.+.+.+.....-+.+.+.|+ +|+.+....-... +.. +. ..+..... ...+-+++.++.
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~i---PvV~~~~~~~~~~~~~~-V~--~d~~~~g~~~~~~l~~~~~g~~~i~~i~ 134 (305)
T 3g1w_A 61 NPAGIAISAIDPVELTDTINKAVDAGI---PIVLFDSGAPDSHAHSF-LG--TNNYNAGMNAAYKMAELLDGEGEVAVIT 134 (305)
T ss_dssp CCSEEEECCSSTTTTHHHHHHHHHTTC---CEEEESSCCTTSCCSCE-EE--CCHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHCCC---cEEEECCCCCCCceeEE-EC--cCHHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 567888888865544333334455566 7778776543211 110 00 00111000 011457888888
Q ss_pred CCCH----HHHHHHHHHcccCCCCCccEEEEccCCCCCCHHH---HHHHHHHHH
Q 027977 161 GLSG----EEMMMFIEAFPETGLEPAVFAALVPNSADKPLQE---LIEEVMGDH 207 (216)
Q Consensus 161 Gft~----eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~e---LieEL~~EH 207 (216)
|-.. +.+.-+.+++++.|++.....+.. .+|+..+ .+.++.+.|
T Consensus 135 ~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~ 185 (305)
T 3g1w_A 135 LPNQLNHQERTTGFKETLEAEFPAIEVIAVED---GRGDSLHSRRVAHQLLEDY 185 (305)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEE---CTTCHHHHHHHHHHHHHHC
T ss_pred CCCcccHHHHHHHHHHHHHhhCCCCEEEEEec---CCCCHHHHHHHHHHHHHhC
Confidence 7543 345567777777776543333322 2455443 444454444
No 58
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=21.89 E-value=76 Score=24.92 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=29.2
Q ss_pred cEEEEcCCCH-HHHHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHH
Q 027977 155 RICFLSGLSG-EEMMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMG 205 (216)
Q Consensus 155 r~vi~sGft~-eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~ 205 (216)
.++++++... +.+..+++.+++.|++ ++.++.+| |+..+.++++.+
T Consensus 79 d~v~v~~~~~~~~~~~~~~~~~~~g~~-~~v~~~~~----~t~~~~~~~~~~ 125 (211)
T 3f4w_A 79 DYVTVLGVTDVLTIQSCIRAAKEAGKQ-VVVDMICV----DDLPARVRLLEE 125 (211)
T ss_dssp SEEEEETTSCHHHHHHHHHHHHHHTCE-EEEECTTC----SSHHHHHHHHHH
T ss_pred CEEEEeCCCChhHHHHHHHHHHHcCCe-EEEEecCC----CCHHHHHHHHHH
Confidence 4677777776 5578899999988863 33334444 555555555443
No 59
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=21.84 E-value=2.9e+02 Score=21.63 Aligned_cols=74 Identities=11% Similarity=-0.054 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcc----c
Q 027977 101 VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFP----E 176 (216)
Q Consensus 101 ~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k----~ 176 (216)
.+-++.+-++|.+.+++++.++-+..- . .-.+-|||-+|.+...+..+...++ +
T Consensus 20 ~~l~~~i~~al~dkKa~DI~vlDv~~~-----------------s-----~~~DyfVIatg~S~rqv~Aiad~v~~~lk~ 77 (136)
T 3ups_A 20 EMLLKLVTDSLDDDQALEIATIPLAGK-----------------S-----SIADYMVIASGRSSRQVTAMAQKLADRIKA 77 (136)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECTTT-----------------C-----SSCSEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCeEEEECCCC-----------------C-----cccCEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 456677888899999988877754321 1 2267899999999999887776654 4
Q ss_pred CCCCCccEEEEccCCCCCCHHH
Q 027977 177 TGLEPAVFAALVPNSADKPLQE 198 (216)
Q Consensus 177 ~Gl~~~ifAvlTPtN~~W~l~e 198 (216)
.|..+ ..+=--.+.+|.|.|
T Consensus 78 ~g~~~--~~~EG~~~~~WvLlD 97 (136)
T 3ups_A 78 ATGYV--SKIEGLPAADWVLLD 97 (136)
T ss_dssp HHCCC--CEEESCSSCSEEEEE
T ss_pred cCCcc--CcccCCCCCCEEEEe
Confidence 45432 233334567887644
No 60
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=21.34 E-value=1.2e+02 Score=24.09 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.8
Q ss_pred CCceEEEecCChHHHHHHHHHHHhcCCc
Q 027977 90 GPPALLLLGFKVEEAVKIRQFLKELDGE 117 (216)
Q Consensus 90 GPpaILL~GF~~EE~~kIR~lL~elg~e 117 (216)
|+-.|++-||..++...+++++..+|+.
T Consensus 1 ~~~vi~~sg~~~~~~~~l~~~~~~~G~~ 28 (210)
T 2nte_A 1 GPLVLIGSGLSSEQQKMLSELAVILKAK 28 (210)
T ss_dssp CCCEEEESSCCHHHHHHHHHHHHHTTCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHcCCE
Confidence 5667889999999999999999999984
No 61
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=20.79 E-value=55 Score=24.67 Aligned_cols=27 Identities=26% Similarity=0.105 Sum_probs=21.9
Q ss_pred CCcEEEEcCCCHHHHHHHHHHcccCCC
Q 027977 153 LPRICFLSGLSGEEMMMFIEAFPETGL 179 (216)
Q Consensus 153 ~~r~vi~sGft~eEl~~~I~a~k~~Gl 179 (216)
..=.|-|+||+++|..++.+.+++.|-
T Consensus 23 ~g~~Ic~sGf~~~er~~l~~~i~~~GG 49 (112)
T 3l46_A 23 QDCILSFLGFSDEEKTNMEEMTEMQGG 49 (112)
T ss_dssp TTCEECEESCCHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 344677899999999999999988763
No 62
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=20.76 E-value=47 Score=26.84 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=29.3
Q ss_pred EEEcCCCHHHHHHHHHHcccCCCC-Cc------cEEEEccCCCCCCH
Q 027977 157 CFLSGLSGEEMMMFIEAFPETGLE-PA------VFAALVPNSADKPL 196 (216)
Q Consensus 157 vi~sGft~eEl~~~I~a~k~~Gl~-~~------ifAvlTPtN~~W~l 196 (216)
.+++|++.++..+++..+.+.|++ .. -.++++|.+.-...
T Consensus 2 ~Ly~~L~~~da~~i~~~L~~~~I~y~~~~~~~~g~~I~Vp~~~~~~a 48 (170)
T 2y9j_Y 2 DLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 48 (170)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCCEEEEECTTSCEEEEECGGGHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHcCCCEEEecCCCCCeEEEECHHHHHHH
Confidence 478899999999999999988887 22 26678886543333
No 63
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=20.34 E-value=87 Score=23.05 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=33.6
Q ss_pred HHHHHHHHHcccCCCCCccEEEEccCCCCC-CHHHHHHHHHHHHHHhhcCC
Q 027977 165 EEMMMFIEAFPETGLEPAVFAALVPNSADK-PLQELIEEVMGDHEMLTGQQ 214 (216)
Q Consensus 165 eEl~~~I~a~k~~Gl~~~ifAvlTPtN~~W-~l~eLieEL~~EHe~m~~~~ 214 (216)
+.+..+++.+++.|++-..-++ -|..+= .+.++++=|.+.|+++...+
T Consensus 20 ~~Va~~i~~i~~sgl~y~~~pm--~T~iEG~e~devm~vv~~~~e~~~~~G 68 (99)
T 1lxn_A 20 SYVAAAVEALKKLNVRYEISGM--GTLLEAEDLDELMEAVKAAHEAVLQAG 68 (99)
T ss_dssp HHHHHHHHHHTTSSCEEEEETT--EEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCeEeCCC--eeEEECCCHHHHHHHHHHHHHHHHHcC
Confidence 5688999999998886433221 123333 46899999999999987654
Done!