Query 027977
Match_columns 216
No_of_seqs 94 out of 96
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 06:28:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027977.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027977hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wf6a_ c.15.1.5 (A:) DNA topo 68.9 11 0.00082 26.6 7.9 36 82-117 34-69 (132)
2 d1lbqa_ c.92.1.1 (A:) Ferroche 51.5 6.9 0.0005 33.1 4.4 118 91-210 3-150 (356)
3 d2f1ka2 c.2.1.6 (A:1-165) Prep 51.4 18 0.0013 25.7 6.3 39 83-124 124-165 (165)
4 d2o5aa1 d.218.1.12 (A:2-114) U 46.8 21 0.0016 25.3 6.0 73 101-197 3-79 (113)
5 d2i76a2 c.2.1.6 (A:2-154) Hypo 42.9 11 0.00079 26.5 3.8 30 95-127 123-152 (153)
6 d1t15a1 c.15.1.3 (A:1649-1757) 42.5 15 0.0011 25.1 4.4 28 92-119 2-29 (109)
7 d7reqa2 c.23.6.1 (A:561-728) M 40.9 59 0.0043 24.2 8.1 78 91-183 37-121 (168)
8 d2g5ca2 c.2.1.6 (A:30-200) Pre 39.7 32 0.0023 24.2 6.0 45 75-122 121-169 (171)
9 d2id1a1 d.218.1.12 (A:1-120) H 39.2 56 0.0041 23.2 7.3 72 103-198 6-81 (120)
10 d2qn6a3 c.37.1.8 (A:2-206) Ini 35.5 26 0.0019 25.8 5.1 84 90-176 110-199 (205)
11 d3eaua1 c.1.7.1 (A:36-361) Vol 34.5 92 0.0067 23.8 10.1 93 98-196 95-188 (326)
12 d2eyqa5 c.37.1.19 (A:779-989) 33.3 87 0.0064 24.3 8.2 49 153-201 57-120 (211)
13 d1r5aa2 c.47.1.5 (A:2-86) Clas 32.1 30 0.0022 22.5 4.4 32 93-125 1-33 (85)
14 d1vi1a_ c.77.1.4 (A:) Fatty ac 32.0 42 0.0031 28.1 6.4 92 93-191 33-131 (334)
15 d1dd3a2 d.45.1.1 (A:58-128) Ri 31.7 23 0.0017 23.7 3.7 26 91-116 41-66 (71)
16 d1kk1a3 c.37.1.8 (A:6-200) Ini 29.7 55 0.004 23.6 6.0 23 154-176 169-191 (195)
17 d1ispa_ c.69.1.18 (A:) Lipase 28.5 42 0.0031 23.7 5.1 53 154-206 3-57 (179)
18 d1t5ia_ c.37.1.19 (A:) Spliceo 27.7 69 0.005 23.0 6.3 65 100-176 11-75 (168)
19 d1cdza_ c.15.1.1 (A:) DNA-repa 27.5 45 0.0033 21.2 4.7 29 88-116 5-34 (96)
20 d1gvea_ c.1.7.1 (A:) Aflatoxin 26.7 1.1E+02 0.0083 23.7 8.0 90 99-194 79-169 (324)
21 d1dz3a_ c.23.1.1 (A:) Sporulat 26.4 43 0.0031 22.7 4.6 49 88-139 74-122 (123)
22 d1xg5a_ c.2.1.2 (A:) Putative 26.4 34 0.0025 26.4 4.5 75 91-177 10-86 (257)
23 d3bula2 c.23.6.1 (A:741-896) M 25.8 1E+02 0.0076 22.3 7.1 74 104-192 23-99 (156)
24 d2csua1 c.2.1.8 (A:1-129) Acet 25.5 48 0.0035 23.3 4.9 85 86-180 3-90 (129)
25 d1dkua2 c.61.1.2 (A:167-315) P 25.4 56 0.0041 23.8 5.3 82 94-186 2-85 (149)
26 d1ctfa_ d.45.1.1 (A:) Ribosoma 25.3 40 0.0029 22.3 4.0 27 90-116 37-63 (68)
27 d1rrma_ e.22.1.2 (A:) Lactalde 24.8 36 0.0026 27.7 4.6 83 89-185 6-93 (385)
28 d1l0wa2 d.74.4.1 (A:295-414) P 24.7 94 0.0069 21.6 6.4 77 98-176 34-111 (120)
29 d1d2na_ c.37.1.20 (A:) Hexamer 24.3 86 0.0063 23.9 6.6 36 88-123 37-73 (246)
30 d1khda1 a.46.2.1 (A:12-80) Ant 23.8 19 0.0014 22.9 2.0 54 124-181 15-68 (69)
31 d3bypa1 d.52.9.1 (A:6-87) Puta 23.6 26 0.0019 22.9 2.8 27 98-124 1-33 (82)
32 d2csua3 c.23.4.1 (A:291-453) A 23.5 54 0.004 23.1 4.9 16 98-113 32-47 (163)
33 d7reqb2 c.23.6.1 (B:476-638) M 22.6 91 0.0066 22.8 6.2 79 91-185 35-121 (163)
34 d2d59a1 c.2.1.8 (A:4-142) Hypo 22.0 69 0.005 22.8 5.2 80 90-180 18-100 (139)
35 d1zj8a1 d.58.36.1 (A:327-406) 21.7 20 0.0014 23.3 1.8 28 153-180 51-78 (80)
36 d2tpta1 a.46.2.1 (A:1-70) Thym 21.5 17 0.0013 23.2 1.5 50 125-178 18-67 (70)
37 d1i5za1 a.4.5.4 (A:138-206) Ca 21.5 18 0.0013 22.7 1.6 22 158-179 37-58 (69)
38 d1u9ya2 c.61.1.2 (A:156-284) P 21.2 1E+02 0.0076 21.6 6.0 82 95-187 3-86 (129)
39 d1o2da_ e.22.1.2 (A:) Alcohol 21.0 98 0.0071 24.8 6.6 16 164-179 72-87 (359)
40 d1wf6a_ c.15.1.5 (A:) DNA topo 20.7 27 0.002 24.4 2.5 26 154-179 43-68 (132)
41 d1uoua1 a.46.2.1 (A:33-100) Th 20.4 20 0.0015 22.8 1.6 51 124-178 17-67 (68)
42 d1hv8a2 c.37.1.19 (A:211-365) 20.3 1E+02 0.0076 21.4 5.9 64 101-177 14-77 (155)
43 d1vkra_ c.44.2.1 (A:) PTS syst 20.0 30 0.0021 23.6 2.5 85 90-176 3-93 (97)
No 1
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.91 E-value=11 Score=26.57 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=28.6
Q ss_pred CCCCCCCCCCceEEEecCChHHHHHHHHHHHhcCCc
Q 027977 82 LNADDPTFGPPALLLLGFKVEEAVKIRQFLKELDGE 117 (216)
Q Consensus 82 ~~~dd~~yGPpaILL~GF~~EE~~kIR~lL~elg~e 117 (216)
++..+..|=.=.|.+.||+..+..+|++++..+|+.
T Consensus 34 ~~~~~~~f~G~~i~isGf~~~~~~~l~~~i~~~GG~ 69 (132)
T d1wf6a_ 34 FQAPEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGV 69 (132)
T ss_dssp CCCCTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCE
T ss_pred hcCchhhhCCeEEEEeeCCCHHHHHHHHHHHHcCCE
Confidence 333344565568889999999999999999999993
No 2
>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=51.53 E-value=6.9 Score=33.07 Aligned_cols=118 Identities=11% Similarity=0.112 Sum_probs=76.8
Q ss_pred CceEEEecC-ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcc-----cccchhhhhc---------------
Q 027977 91 PPALLLLGF-KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNT-----KQTNLEAVKV--------------- 149 (216)
Q Consensus 91 PpaILL~GF-~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~-----~~~d~e~~k~--------------- 149 (216)
|-+|||+|+ +++....++..|.++=.+ =+|+.++. -.+.+|..++-. ....|....+
T Consensus 3 ~tgVLL~nlGtP~s~~~V~~yL~~fl~D-~~vi~~p~-~~~~~l~~~I~~~R~~k~a~~Y~~IgggSPL~~~t~~qa~~l 80 (356)
T d1lbqa_ 3 PTGIVLMNMGGPSKVEETYDFLYQLFAD-NDLIPISA-KYQKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQATEV 80 (356)
T ss_dssp CEEEEEEECCCCSSGGGHHHHHHHHTTC-CSSSCCCS-SSHHHHHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCChHHHHHHHHHHcCC-CccccCCH-HHHHHHhhhcCccCCHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 568999999 566677888888876322 24555554 344555443310 0011111100
Q ss_pred -------cCCCCcEEEEcCCCHHH--HHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHHHHHHh
Q 027977 150 -------AESLPRICFLSGLSGEE--MMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMGDHEML 210 (216)
Q Consensus 150 -------~~~~~r~vi~sGft~eE--l~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~EHe~m 210 (216)
.....++.+.-||.-.. +.+.|+.+++.|+..++.-.+-|....-+.+..++++.+.=+.+
T Consensus 81 ~~~L~~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ilvlPlyPqyS~sTt~s~~~~v~~~l~~~ 150 (356)
T d1lbqa_ 81 CKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKAL 150 (356)
T ss_dssp HHHHHHHCGGGCCEEEEEEESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHHHHHHHHHH
T ss_pred HHHhhccccccCCceeEEEeccccccHHHHHHHHHhCCCcceEEEecchhhhHHHHHHHHHHHHHHHHHh
Confidence 00112455566766544 99999999999999999999999999999999999888764443
No 3
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=51.42 E-value=18 Score=25.71 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=29.4
Q ss_pred CCCCCCCCCceEEEe---cCChHHHHHHHHHHHhcCCcceEEEEe
Q 027977 83 NADDPTFGPPALLLL---GFKVEEAVKIRQFLKELDGEFLEVIFC 124 (216)
Q Consensus 83 ~~dd~~yGPpaILL~---GF~~EE~~kIR~lL~elg~e~vkVi~v 124 (216)
++....|....++|+ +-+++.+++++.++..+|. +|+.|
T Consensus 124 ~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~~~lG~---~v~~c 165 (165)
T d2f1ka2 124 GAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGV---KIYLC 165 (165)
T ss_dssp GCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTC---EEEEC
T ss_pred hhcccccCCCeEEEEeCCCCCHHHHHHHHHHHHHhCC---EEEeC
Confidence 355567766555555 4478999999999999998 88766
No 4
>d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328 {Bacillus halodurans [TaxId: 86665]}
Probab=46.81 E-value=21 Score=25.30 Aligned_cols=73 Identities=12% Similarity=-0.050 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHc----cc
Q 027977 101 VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAF----PE 176 (216)
Q Consensus 101 ~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~----k~ 176 (216)
++-++.+-+.|.+.+++++.|+-+... . .-.+-|||.+|.+...++.+.+.+ |+
T Consensus 3 ~el~~~i~~~l~dkKa~dI~vldv~~~-----------------~-----~~~D~~VIatg~S~rh~~aia~~v~~~~k~ 60 (113)
T d2o5aa1 3 QELLQLAVNAVDDKKAEQVVALNMKGI-----------------S-----LIADFFLICHGNSEKQVQAIAHELKKVAQE 60 (113)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECBTT-----------------B-----C--CEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCeEEEECCCC-----------------C-----cccCEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 455667788899999988877744321 1 125789999999999987665554 55
Q ss_pred CCCCCccEEEEccCCCCCCHH
Q 027977 177 TGLEPAVFAALVPNSADKPLQ 197 (216)
Q Consensus 177 ~Gl~~~ifAvlTPtN~~W~l~ 197 (216)
.|.+. +.+=.-.+.+|.+-
T Consensus 61 ~~~~~--~~~eG~~~~~Wvli 79 (113)
T d2o5aa1 61 QGIEI--KRLEGYEQARWVLI 79 (113)
T ss_dssp TTCCC--CEEESTTTTSEEEE
T ss_pred hcccc--ccccCCCCCCEEEe
Confidence 56643 33444556677653
No 5
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}
Probab=42.94 E-value=11 Score=26.53 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=24.1
Q ss_pred EEecCChHHHHHHHHHHHhcCCcceEEEEeCCC
Q 027977 95 LLLGFKVEEAVKIRQFLKELDGEFLEVIFCTED 127 (216)
Q Consensus 95 LL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e 127 (216)
+.++=+.+.++.++.++..+|. +++.+++|
T Consensus 123 ~~~~gd~~~~~~~~~l~~~lG~---~~~~i~~e 152 (153)
T d2i76a2 123 FGLEGDERGLPIVKKIAEEISG---KYFVIPSE 152 (153)
T ss_dssp EEECCCTTTHHHHHHHHHHHCS---CEEECCGG
T ss_pred EEEeCCHHHHHHHHHHHHHHCC---cEEEeCCC
Confidence 3445588889999999999999 77787765
No 6
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.53 E-value=15 Score=25.06 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=24.7
Q ss_pred ceEEEecCChHHHHHHHHHHHhcCCcce
Q 027977 92 PALLLLGFKVEEAVKIRQFLKELDGEFL 119 (216)
Q Consensus 92 paILL~GF~~EE~~kIR~lL~elg~e~v 119 (216)
..|++-||+.++.+.|++++..+|+.+.
T Consensus 2 ~~i~~SGl~~~e~~~l~~~i~~~Gg~~~ 29 (109)
T d1t15a1 2 MSMVVSGLTPEEFMLVYKFARKHHITLT 29 (109)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHHTCEEC
T ss_pred EEEEECCCCHHHHHHHHHHHHHcCCEEE
Confidence 4688999999999999999999999543
No 7
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=40.87 E-value=59 Score=24.22 Aligned_cols=78 Identities=14% Similarity=0.020 Sum_probs=48.6
Q ss_pred CceEEEecC--C--hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCC---C
Q 027977 91 PPALLLLGF--K--VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGL---S 163 (216)
Q Consensus 91 PpaILL~GF--~--~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGf---t 163 (216)
+|+||+.-. + .--.+-+..+|.+.|. .|+...... +..+++.... .....+|.+|.+ .
T Consensus 37 ~pkVlla~~g~D~Hd~G~~~va~~l~~~G~---eVi~lg~~~---~~e~iv~aa~---------~~~advI~iSs~~~~~ 101 (168)
T d7reqa2 37 RPRILLAKMGQDGHDRGQKVIATAYADLGF---DVDVGPLFQ---TPEETARQAV---------EADVHVVGVSSLAGGH 101 (168)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHTTC---EEEECCTTB---CHHHHHHHHH---------HHTCSEEEEEECSSCH
T ss_pred CCeEEEEeCCccHHHHHHHHHHHHHHhCCc---ceecCCCcC---cHHHHHHHHH---------ccCCCEEEEecCcccc
Confidence 578888555 3 3345567778888887 777765443 4444443111 112345666644 5
Q ss_pred HHHHHHHHHHcccCCCCCcc
Q 027977 164 GEEMMMFIEAFPETGLEPAV 183 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~~i 183 (216)
.+.+.++++.+|+.|.+.+.
T Consensus 102 ~~~~~~l~~~L~~~g~~~v~ 121 (168)
T d7reqa2 102 LTLVPALRKELDKLGRPDIL 121 (168)
T ss_dssp HHHHHHHHHHHHHTTCTTSE
T ss_pred hHHHHHHHHHHHhcCCCCeE
Confidence 57789999999999977553
No 8
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}
Probab=39.72 E-value=32 Score=24.20 Aligned_cols=45 Identities=9% Similarity=0.137 Sum_probs=31.1
Q ss_pred cCCccccCC-CCCCCCCCceEEEe---cCChHHHHHHHHHHHhcCCcceEEE
Q 027977 75 EDSKFVPLN-ADDPTFGPPALLLL---GFKVEEAVKIRQFLKELDGEFLEVI 122 (216)
Q Consensus 75 ~d~~f~~~~-~dd~~yGPpaILL~---GF~~EE~~kIR~lL~elg~e~vkVi 122 (216)
.+++..... ++...|-...++|+ +-+++.++++++++..+|. +|+
T Consensus 121 ~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~---~v~ 169 (171)
T d2g5ca2 121 AGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGG---VVE 169 (171)
T ss_dssp CCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTC---EEE
T ss_pred cccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHHHHHHHHHcCC---EEE
Confidence 344444333 55667766555555 4478899999999999998 665
No 9
>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518 {Chromobacterium violaceum [TaxId: 536]}
Probab=39.21 E-value=56 Score=23.16 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHH----HcccCC
Q 027977 103 EAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIE----AFPETG 178 (216)
Q Consensus 103 E~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~----a~k~~G 178 (216)
-.+.+-++|.+.+++++.|+-+.+ .. .-.+-|||.+|.+...++.+.+ .+|+.|
T Consensus 6 l~~~i~~~l~d~Ka~DI~vldv~~-----------------~~-----~~~D~~VI~Tg~S~rh~~aia~~i~~~lk~~~ 63 (120)
T d2id1a1 6 ISKLAIEALEDIKGKDIIELDTSK-----------------LT-----SLFQRMIVATGDSNRQVKALANSVQVKLKEAG 63 (120)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEGGG-----------------TC-----SSCSEEEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCeEEEECCC-----------------CC-----ccccEEEEEEecCHHHHHHHHHHHHHHHHHcC
Confidence 344557888899998887774421 01 2267799999999999887544 455666
Q ss_pred CCCccEEEEccCCCCCCHHH
Q 027977 179 LEPAVFAALVPNSADKPLQE 198 (216)
Q Consensus 179 l~~~ifAvlTPtN~~W~l~e 198 (216)
.++. .+=--.+.+|.|-|
T Consensus 64 ~~~~--~~eG~~~~~WillD 81 (120)
T d2id1a1 64 VDIV--GSEGHESGEWVLVD 81 (120)
T ss_dssp CCCC--BCCSTTTSSEEEEE
T ss_pred Cccc--cccCCCCCCEEEEe
Confidence 6432 33334466776543
No 10
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=35.47 E-value=26 Score=25.79 Aligned_cols=84 Identities=14% Similarity=0.019 Sum_probs=44.5
Q ss_pred CCceEEEec----CChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHH--hcccccchhhhhccCCCCcEEEEcCCC
Q 027977 90 GPPALLLLG----FKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEA--MNTKQTNLEAVKVAESLPRICFLSGLS 163 (216)
Q Consensus 90 GPpaILL~G----F~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel--~~~~~~d~e~~k~~~~~~r~vi~sGft 163 (216)
.--+||++. +.....+..-.++..+|+..+ |+++++-++-..-... ...-+..... .....-+++..|+++
T Consensus 110 ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~i-IV~vNK~Dl~~~~~~~~~~~~~~~~l~~--~~~~~~p~ipiSA~~ 186 (205)
T d2qn6a3 110 MDGAILVVAANEPFPQPQTREHFVALGIIGVKNL-IIVQNKVDVVSKEEALSQYRQIKQFTKG--TWAENVPIIPVSALH 186 (205)
T ss_dssp CSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCE-EEEEECGGGSCHHHHHHHHHHHHHHHTT--STTTTCCEEECBTTT
T ss_pred cccccccccccccccchhHHHHHHHHHHcCCcee-eeccccCCCccchHHHHHHHHHHHHhcc--ccCCCCeEEEEeCCC
Confidence 345566654 434444555666777776433 5567777663221111 1100000000 011234688889999
Q ss_pred HHHHHHHHHHccc
Q 027977 164 GEEMMMFIEAFPE 176 (216)
Q Consensus 164 ~eEl~~~I~a~k~ 176 (216)
+.-|++++.++.+
T Consensus 187 g~nI~~L~e~i~~ 199 (205)
T d2qn6a3 187 KINIDSLIEGIEE 199 (205)
T ss_dssp TBSHHHHHHHHHH
T ss_pred CCChHHHHHHHHh
Confidence 9888888877655
No 11
>d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=34.51 E-value=92 Score=23.82 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=66.4
Q ss_pred cCCh-HHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHccc
Q 027977 98 GFKV-EEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPE 176 (216)
Q Consensus 98 GF~~-EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~ 176 (216)
+++. .-.+.+.+-|..|+.+.+.+..+-.-+.+.++.+.++......+ .+..+.+-+++++...+.+.......
T Consensus 95 ~~~~~~~~~s~~~SL~rL~~d~iDl~~lH~pd~~~~~~e~~~~~~~~~~-----~g~~~~~g~s~~~~~~~~~~~~~~~~ 169 (326)
T d3eaua1 95 GLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVIN-----QGMAMYWGTSRWSSMEIMEAYSVARQ 169 (326)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSCEEEEEESSCCTTSCHHHHHHHHHHHHH-----TTSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhcCccceeeecccCCCccccchhhhcccceeee-----eeccccccccccccchhhhhhcchhc
Confidence 4543 45567888899999999988877765566666666553222222 44678899999999999999999988
Q ss_pred CCCCCccEEEEccCCCCCCH
Q 027977 177 TGLEPAVFAALVPNSADKPL 196 (216)
Q Consensus 177 ~Gl~~~ifAvlTPtN~~W~l 196 (216)
.++.+. .+.....|..+.-
T Consensus 170 ~~~~~~-~~~~~~~~~~~~~ 188 (326)
T d3eaua1 170 FNLIPP-ICEQAEYHMFQRE 188 (326)
T ss_dssp TTCCCC-CEEEEECBTTBCH
T ss_pred cCCCce-eeeccccchhhhh
Confidence 887554 4666677776653
No 12
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=33.27 E-value=87 Score=24.33 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=37.0
Q ss_pred CCcEEEEcC-CCHHHHHHHHHHccc-------------CCCCCc-cEEEEccCCCCCCHHHHHH
Q 027977 153 LPRICFLSG-LSGEEMMMFIEAFPE-------------TGLEPA-VFAALVPNSADKPLQELIE 201 (216)
Q Consensus 153 ~~r~vi~sG-ft~eEl~~~I~a~k~-------------~Gl~~~-ifAvlTPtN~~W~l~eLie 201 (216)
.-++.++|| |+.+|.+++|..|++ .|+..+ +-.++..+...+-|.+|+.
T Consensus 57 ~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI~~a~rfGLaQLhQ 120 (211)
T d2eyqa5 57 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 120 (211)
T ss_dssp TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHH
T ss_pred ceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEEecchhcccccccc
Confidence 457888998 888999999999985 355533 4556667777788888764
No 13
>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}
Probab=32.14 E-value=30 Score=22.51 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=24.9
Q ss_pred eEEEecCC-hHHHHHHHHHHHhcCCcceEEEEeC
Q 027977 93 ALLLLGFK-VEEAVKIRQFLKELDGEFLEVIFCT 125 (216)
Q Consensus 93 aILL~GF~-~EE~~kIR~lL~elg~e~vkVi~vt 125 (216)
+++|||+. .--.++++-+|.++|++ +..+.|+
T Consensus 1 t~iLY~~~~S~~~~~v~~~l~e~gi~-~e~~~v~ 33 (85)
T d1r5aa2 1 TTVLYYLPASPPCRSVLLLAKMIGVE-LDLKVLN 33 (85)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred CEEEEcCCCCHhHHHHHHHHHHcCCC-CEEEEec
Confidence 57899995 57789999999999995 3455554
No 14
>d1vi1a_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein PlsX {Bacillus subtilis [TaxId: 1423]}
Probab=31.97 E-value=42 Score=28.08 Aligned_cols=92 Identities=17% Similarity=0.244 Sum_probs=65.2
Q ss_pred eEEEecCChHHHHHHHHHHHhcCCcceEEEEeCCC--chhchHHHHhccccc----chhhhhccCCCCcEEEEcCCCHHH
Q 027977 93 ALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTED--MIPRSLWEAMNTKQT----NLEAVKVAESLPRICFLSGLSGEE 166 (216)
Q Consensus 93 aILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e--~~~~pLGel~~~~~~----d~e~~k~~~~~~r~vi~sGft~eE 166 (216)
.++|+|= ++ +|+..|.... +.++|+.+++. |-+.|...+=.+.+. ..+.++ .+.-..++=+|=|+.-
T Consensus 33 ~i~LvG~-~~---~i~~~l~~~~-~~i~Ivha~~~I~m~d~p~~alr~kk~SSm~~a~~lvk--~g~ada~VSaGnTGAl 105 (334)
T d1vi1a_ 33 HITLVGD-KT---TIESHLTTTS-DRITVLHADEVIEPTDEPVRAVRRKKNSSMVLMAQEVA--ENRADACISAGNTGAL 105 (334)
T ss_dssp EEEEEEC-HH---HHHTTCCSCC-TTEEEEECCBCCCTTSCHHHHHHHCTTBHHHHHHHHHH--TTSCSEEEECSCHHHH
T ss_pred eEEEEeC-HH---HHHHHHhhCc-cceEEEcCCCcccCCcchhHHHHhcccchHHHHHHHhh--ccccCeEEeccCchhh
Confidence 5888883 22 3555665433 46899999887 677777655443321 112232 3356789999999999
Q ss_pred HHHHHHHcccC-CCCCccEEEEccCC
Q 027977 167 MMMFIEAFPET-GLEPAVFAALVPNS 191 (216)
Q Consensus 167 l~~~I~a~k~~-Gl~~~ifAvlTPtN 191 (216)
|..-...++.. |+.+|..|++-||-
T Consensus 106 ~a~a~~~l~~i~gi~RPaia~~~Pt~ 131 (334)
T d1vi1a_ 106 MTAGLFIVGRIKGIDRPALAPTLPTV 131 (334)
T ss_dssp HHHHHHTTCBCTTCSSCEEECEECCS
T ss_pred HhhHHhhHhhhcccchhhhheeCCCC
Confidence 99988889887 99999999999983
No 15
>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=31.73 E-value=23 Score=23.71 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=24.6
Q ss_pred CceEEEecCChHHHHHHHHHHHhcCC
Q 027977 91 PPALLLLGFKVEEAVKIRQFLKELDG 116 (216)
Q Consensus 91 PpaILL~GF~~EE~~kIR~lL~elg~ 116 (216)
||+++-=|.+++|..+++..|.+.|+
T Consensus 41 ~~~vike~v~KeeAE~~K~~Le~aGA 66 (71)
T d1dd3a2 41 PDAVIKSGVSKEEAEEIKKKLEEAGA 66 (71)
T ss_dssp TTCEEEEEECHHHHHHHHHHHHHTTC
T ss_pred chHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 67899999999999999999999998
No 16
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=29.67 E-value=55 Score=23.56 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=17.3
Q ss_pred CcEEEEcCCCHHHHHHHHHHccc
Q 027977 154 PRICFLSGLSGEEMMMFIEAFPE 176 (216)
Q Consensus 154 ~r~vi~sGft~eEl~~~I~a~k~ 176 (216)
-+++-.|+++|+-|+++++++.+
T Consensus 169 ~~iIpiSA~~G~ni~~Ll~~I~~ 191 (195)
T d1kk1a3 169 APIIPISALHGANIDVLVKAIED 191 (195)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45777888888888887777654
No 17
>d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]}
Probab=28.48 E-value=42 Score=23.67 Aligned_cols=53 Identities=8% Similarity=-0.041 Sum_probs=0.0
Q ss_pred CcEEEEcCCCHHH--HHHHHHHcccCCCCCccEEEEccCCCCCCHHHHHHHHHHH
Q 027977 154 PRICFLSGLSGEE--MMMFIEAFPETGLEPAVFAALVPNSADKPLQELIEEVMGD 206 (216)
Q Consensus 154 ~r~vi~sGft~eE--l~~~I~a~k~~Gl~~~ifAvlTPtN~~W~l~eLieEL~~E 206 (216)
+++|++||+.+.. ...+.+.+.+.|.....+=...-....+...+..+.+.+.
T Consensus 3 ~PVv~vHG~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 57 (179)
T d1ispa_ 3 NPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPVLSRF 57 (179)
T ss_dssp CCEEEECCTTCCGGGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHcCCeEEEEecCCccccccccchhhhhHHHH
No 18
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.71 E-value=69 Score=22.97 Aligned_cols=65 Identities=23% Similarity=0.290 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHccc
Q 027977 100 KVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPE 176 (216)
Q Consensus 100 ~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~ 176 (216)
+.+..+.|.++|..+...-+ |++|..-..-.-|.+.+... + ..-..+-++++.++-...++.|++
T Consensus 11 ~~~K~~~L~~ll~~~~~~k~-iIF~~~~~~~~~l~~~L~~~--~---------~~~~~ihg~~~~~~r~~~l~~F~~ 75 (168)
T d1t5ia_ 11 DNEKNRKLFDLLDVLEFNQV-VIFVKSVQRCIALAQLLVEQ--N---------FPAIAIHRGMPQEERLSRYQQFKD 75 (168)
T ss_dssp GGGHHHHHHHHHHHSCCSSE-EEECSSHHHHHHHHHHHHHT--T---------CCEEEECTTSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCCeE-EEEEeeeecchhhhhhhccc--c---------ccccccccccchhhhhhhhhhhcc
Confidence 46788889999988765544 66776544444455444411 1 122345557788889999999985
No 19
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.52 E-value=45 Score=21.23 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=24.4
Q ss_pred CCCCceEEEec-CChHHHHHHHHHHHhcCC
Q 027977 88 TFGPPALLLLG-FKVEEAVKIRQFLKELDG 116 (216)
Q Consensus 88 ~yGPpaILL~G-F~~EE~~kIR~lL~elg~ 116 (216)
.|-.-.+.++| |+.++...|++++..+|+
T Consensus 5 ~F~g~~f~v~g~~~~~~~~~l~~~i~~~GG 34 (96)
T d1cdza_ 5 FFQGKHFFLYGEFPGDERRKLIRYVTAFNG 34 (96)
T ss_dssp TTTTCEEEECSCCCTHHHHHHHHHHHHTTC
T ss_pred ccCCcEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 45556677888 899999999999999999
No 20
>d1gvea_ c.1.7.1 (A:) Aflatoxin aldehyde reductase (akr7a1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.67 E-value=1.1e+02 Score=23.70 Aligned_cols=90 Identities=12% Similarity=-0.048 Sum_probs=60.2
Q ss_pred CChH-HHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcccC
Q 027977 99 FKVE-EAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPET 177 (216)
Q Consensus 99 F~~E-E~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~~ 177 (216)
++.+ =...+.+-|..||.+-+.+..+-..+...+..+.+..-..-. ..+.-+.+=+|+++..++.+++...+..
T Consensus 79 ~~~~~i~~~le~SL~rL~~d~iDl~~lH~~~~~~~~~e~~~~l~~l~-----~~Gki~~iG~s~~~~~~~~~~~~~~~~~ 153 (324)
T d1gvea_ 79 LKPADVRFQLETSLKRLQCPRVDLFYLHFPDHGTPIEETLQACHQLH-----QEGKFVELGLSNYVSWEVAEICTLCKKN 153 (324)
T ss_dssp SSHHHHHHHHHHHHHHTTCSCEEEEEECSCCTTSCHHHHHHHHHHHH-----HTTSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHhhhccccccccchhhccccccchhhhhhhHHHH-----hcccccchhcccchHHHHHHHhhhhhcc
Confidence 4433 345577889999999999998877777666666655211111 1346777889999999999998888776
Q ss_pred CCCCccEEEEccCCCCC
Q 027977 178 GLEPAVFAALVPNSADK 194 (216)
Q Consensus 178 Gl~~~ifAvlTPtN~~W 194 (216)
+.. .+.++-+.-|.-+
T Consensus 154 ~~~-~~~~~q~~ynll~ 169 (324)
T d1gvea_ 154 GWI-MPTVYQGMYNAIT 169 (324)
T ss_dssp TCC-CEEEEEEECBTTB
T ss_pred ccc-cceeeeccchhhc
Confidence 543 3444445555433
No 21
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=26.42 E-value=43 Score=22.74 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=35.3
Q ss_pred CCCCceEEEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcc
Q 027977 88 TFGPPALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNT 139 (216)
Q Consensus 88 ~yGPpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~ 139 (216)
...|+.|++-++..++..+ -+.+.|+..+=.|+++.+.+...+..++++
T Consensus 74 ~~~~~ii~~t~~~~~~~~~---~a~~~Ga~~~l~KP~~~~~L~~~i~~v~~k 122 (123)
T d1dz3a_ 74 EHQPNVIMLTAFGQEDVTK---KAVELGASYFILKPFDMENLAHHIRQVYGK 122 (123)
T ss_dssp SSCCEEEEEEETTCHHHHH---HHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred CCCCeEEEEECcCCHHHHH---HHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 4556777788886555433 344788887778888988888888887763
No 22
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.40 E-value=34 Score=26.36 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=43.8
Q ss_pred CceEEEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEE-EEcCCCHHH-HH
Q 027977 91 PPALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRIC-FLSGLSGEE-MM 168 (216)
Q Consensus 91 PpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~v-i~sGft~eE-l~ 168 (216)
-..+|+-|=+.-=-..+-+.|...|. +|+.+.... ..+.+++. +.... ....+++ +-.+++.++ +.
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~---~Vv~~~r~~--~~l~~~~~--~l~~~-----~~~~~~~~~~~Dls~~~~v~ 77 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGL---KVVGCARTV--GNIEELAA--ECKSA-----GYPGTLIPYRCDLSNEEDIL 77 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH--HHHHHHHH--HHHHT-----TCSSEEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH--HHHHHHHH--HHHhc-----CCCceEEEEEccCCCHHHHH
Confidence 45778878765555555556667787 777776542 23444333 10111 1123444 456777744 99
Q ss_pred HHHHHcccC
Q 027977 169 MFIEAFPET 177 (216)
Q Consensus 169 ~~I~a~k~~ 177 (216)
.+++.+.+.
T Consensus 78 ~~v~~~~~~ 86 (257)
T d1xg5a_ 78 SMFSAIRSQ 86 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988876
No 23
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.84 E-value=1e+02 Score=22.29 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCH---HHHHHHHHHcccCCCC
Q 027977 104 AVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSG---EEMMMFIEAFPETGLE 180 (216)
Q Consensus 104 ~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~---eEl~~~I~a~k~~Gl~ 180 (216)
.+-+..+|...|. +|+......-...+-+++. .....+|.+|.+.. ..+.++++.+++.|+.
T Consensus 23 ~~iv~~~l~~~G~---~Vi~LG~~~p~e~~~~~~~------------~~~~d~i~lS~l~~~~~~~~~~~~~~l~~~g~~ 87 (156)
T d3bula2 23 KNIVGVVLQCNNY---EIVDLGVMVPAEKILRTAK------------EVNADLIGLSGLITPSLDEMVNVAKEMERQGFT 87 (156)
T ss_dssp HHHHHHHHHTTTC---EEEECCSSBCHHHHHHHHH------------HHTCSEEEEECCSTHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC---EEEECCCCCCHHHHHHHHH------------hhCCCEEEEecccccchHHHHHHHHHHHhcccc
Confidence 3456667777776 8887766543333333333 12456888888876 4578889999999987
Q ss_pred CccEEEEccCCC
Q 027977 181 PAVFAALVPNSA 192 (216)
Q Consensus 181 ~~ifAvlTPtN~ 192 (216)
.+++.-=-+.|.
T Consensus 88 ~~vivGG~~~~~ 99 (156)
T d3bula2 88 IPLLIGGATTSK 99 (156)
T ss_dssp SCEEEESTTCCH
T ss_pred ceEEEecccccc
Confidence 666544444443
No 24
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=25.50 E-value=48 Score=23.31 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=49.1
Q ss_pred CCCCCCceEEEecCChHHHH---HHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCC
Q 027977 86 DPTFGPPALLLLGFKVEEAV---KIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGL 162 (216)
Q Consensus 86 d~~yGPpaILL~GF~~EE~~---kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGf 162 (216)
|..|-|..|.++|-+.+... ++-+.|.+.+ .-+|.+|.+.. . ++.+ .+-+....+-.....++++ ..
T Consensus 3 ~~lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~--~g~v~pVnP~~-~----~i~G--~~~y~sl~dlp~~vDlvvi-~v 72 (129)
T d2csua1 3 DYFFNPKGIAVIGASNDPKKLGYEVFKNLKEYK--KGKVYPVNIKE-E----EVQG--VKAYKSVKDIPDEIDLAII-VV 72 (129)
T ss_dssp CTTTSCSEEEEETCCSCTTSHHHHHHHHHTTCC--SSEEEEECSSC-S----EETT--EECBSSTTSCSSCCSEEEE-CS
T ss_pred hHhCCCCeEEEEccCCCCCCcHHHHHHHHHHcC--CCcEEEeccCc-c----ccCC--eEeecchhhcCCCCceEEE-ec
Confidence 45789999999999633222 2323344433 13888888764 2 2333 2233332222223333333 34
Q ss_pred CHHHHHHHHHHcccCCCC
Q 027977 163 SGEEMMMFIEAFPETGLE 180 (216)
Q Consensus 163 t~eEl~~~I~a~k~~Gl~ 180 (216)
..+.+.++++...+.|.+
T Consensus 73 p~~~~~~~~~~~~~~g~~ 90 (129)
T d2csua1 73 PKRFVKDTLIQCGEKGVK 90 (129)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred ChHHhHHHHHHHHHcCCC
Confidence 678899999999888875
No 25
>d1dkua2 c.61.1.2 (A:167-315) Phosphoribosylpyrophosphate synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=25.38 E-value=56 Score=23.82 Aligned_cols=82 Identities=10% Similarity=0.130 Sum_probs=46.7
Q ss_pred EEEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCC--CHHHHHHHH
Q 027977 94 LLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGL--SGEEMMMFI 171 (216)
Q Consensus 94 ILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGf--t~eEl~~~I 171 (216)
+.+++-+..-.++.+.+-+.+|. ++..+.+........+.+. ..++ ...+.++|+=++ |+..|-+..
T Consensus 2 ~vvVsPD~G~~kra~~~a~~l~~---~~a~~~K~r~~~~~~~~~~---~~Gd-----V~gk~viIvDDmi~TGgTl~~aa 70 (149)
T d1dkua2 2 IVIVSPDHGGVTRARKLADRLKA---PIAIIDKRRPRPNVAEVMN---IVGN-----IEGKTAILIDDIIDTAGTITLAA 70 (149)
T ss_dssp EEEEESSGGGHHHHHHHHHHTTC---CEEEEECC---------CE---EESC-----CTTCEEEEECSEESSCHHHHHHH
T ss_pred eEEEEeCccHHHHHHHHHHHcCC---CEEEEEeccCCCCeeEEEe---eeee-----eCCCEEEEEhhhhhchHhHHHHH
Confidence 35666777778888888888888 4445555443322222211 1111 113446666665 567888888
Q ss_pred HHcccCCCCCccEEE
Q 027977 172 EAFPETGLEPAVFAA 186 (216)
Q Consensus 172 ~a~k~~Gl~~~ifAv 186 (216)
+.+|+.|...++.++
T Consensus 71 ~~L~~~GA~~V~~~~ 85 (149)
T d1dkua2 71 NALVENGAKEVYACC 85 (149)
T ss_dssp HHHHHTTCSEEEEEC
T ss_pred HHHHHhCCceEEEEE
Confidence 888888887665443
No 26
>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.30 E-value=40 Score=22.27 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=25.6
Q ss_pred CCceEEEecCChHHHHHHHHHHHhcCC
Q 027977 90 GPPALLLLGFKVEEAVKIRQFLKELDG 116 (216)
Q Consensus 90 GPpaILL~GF~~EE~~kIR~lL~elg~ 116 (216)
+.|+++.-|.+++|...++.-|.+.|+
T Consensus 37 ~~P~~ike~vskeeAE~ik~~Le~aGA 63 (68)
T d1ctfa_ 37 SAPAALKEGVSKDDAEALKKALEEAGA 63 (68)
T ss_dssp TCSEEEEEEECHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999998
No 27
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}
Probab=24.81 E-value=36 Score=27.75 Aligned_cols=83 Identities=8% Similarity=0.086 Sum_probs=47.7
Q ss_pred CCCceEEEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhch-HHHHhcccccchhhhhccCCCCcEEEEcCCC----
Q 027977 89 FGPPALLLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRS-LWEAMNTKQTNLEAVKVAESLPRICFLSGLS---- 163 (216)
Q Consensus 89 yGPpaILL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~p-LGel~~~~~~d~e~~k~~~~~~r~vi~sGft---- 163 (216)
+.|++++ |-...+++|.+.|.++|.. ++..|+..-..+. +.+-+. ...+ ...-.+.+|+|+.
T Consensus 6 ~~~~~~~---fG~g~l~~l~~~l~~~G~k--~~Livt~~~~~~~g~~~~v~---~~L~-----~~gi~~~vf~~v~~~p~ 72 (385)
T d1rrma_ 6 ILNETAW---FGRGAVGALTDEVKRRGYQ--KALIVTDKTLVQCGVVAKVT---DKMD-----AAGLAWAIYDGVVPNPT 72 (385)
T ss_dssp ECCSEEE---ESTTGGGGHHHHHHHHTCC--EEEEECBHHHHHTTHHHHHH---HHHH-----HTTCEEEEECBCCSSCB
T ss_pred ecCCCcE---ECcCHHHHHHHHHHHcCCC--EEEEEECcchhhCcHHHHHH---HHHH-----HcCCeEEEEcCccCCCC
Confidence 3456644 4455677788888898863 4555654433322 211111 0011 1123466788875
Q ss_pred HHHHHHHHHHcccCCCCCccEE
Q 027977 164 GEEMMMFIEAFPETGLEPAVFA 185 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl~~~ifA 185 (216)
-++++++++.+|+.+. +.++|
T Consensus 73 ~~~v~~~~~~~~~~~~-D~Iia 93 (385)
T d1rrma_ 73 ITVVKEGLGVFQNSGA-DYLIA 93 (385)
T ss_dssp HHHHHHHHHHHHHHTC-SEEEE
T ss_pred HHHHHHHhhhhhccCC-CEEEe
Confidence 4889999999998875 44444
No 28
>d1l0wa2 d.74.4.1 (A:295-414) Prokaryotic AspRS, insert domain {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=24.73 E-value=94 Score=21.64 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=50.7
Q ss_pred cCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCc-EEEEcCCCHHHHHHHHHHccc
Q 027977 98 GFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPR-ICFLSGLSGEEMMMFIEAFPE 176 (216)
Q Consensus 98 GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r-~vi~sGft~eEl~~~I~a~k~ 176 (216)
|++..+++++.+..++.|+..+-.+.+.++...-|+.-.+.......- ...+-.... ++|..| +.+...+++.++|.
T Consensus 34 ~~sRk~~d~l~~~ak~~gakGL~~ik~~~~~~~gpi~Kfl~~~~~~l~-~~~~~~~GD~i~f~ag-~~~~~~~~LG~lR~ 111 (120)
T d1l0wa2 34 ALSRKEVAELEEVAKRHKAQGLAWARVEEGGFSGGVAKFLEPVREALL-QATEARPGDTLLFVAG-PRKVAATALGAVRL 111 (120)
T ss_dssp CCCHHHHHHHHHHHHHTSCSCCEEEEEETTEEESTTHHHHGGGHHHHH-HHHCCCTTCEEEEEEE-SHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhhhhhhheeEeeccchhhHHHHHhHHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHH
Confidence 578899999999999999987666667777777887776642111111 011112333 445555 78888888888874
No 29
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=24.28 E-value=86 Score=23.91 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=27.7
Q ss_pred CCCCceEEEecCC-hHHHHHHHHHHHhcCCcceEEEE
Q 027977 88 TFGPPALLLLGFK-VEEAVKIRQFLKELDGEFLEVIF 123 (216)
Q Consensus 88 ~yGPpaILL~GF~-~EE~~kIR~lL~elg~e~vkVi~ 123 (216)
...+..|||||-. --...-.|.+..+++.+++++..
T Consensus 37 ~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~ 73 (246)
T d1d2na_ 37 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS 73 (246)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHhhccccccccccc
Confidence 3456789999994 55666778889999998887754
No 30
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=23.79 E-value=19 Score=22.89 Aligned_cols=54 Identities=9% Similarity=-0.055 Sum_probs=36.2
Q ss_pred eCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcccCCCCC
Q 027977 124 CTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETGLEP 181 (216)
Q Consensus 124 vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~~Gl~~ 181 (216)
.+.++..+.+..++...-++..-.. .=-.+-+.|.|.+|+.-+.+++++.+.+.
T Consensus 15 Ls~ee~~~~~~~i~~g~~~d~qiaa----fL~al~~kg~t~dEi~g~~~am~~~~~~~ 68 (69)
T d1khda1 15 MTQEESHQLFAAIVRGELEDSQLAA----ALISMKMRGERPEEIAGAASALLADAQPF 68 (69)
T ss_dssp CCHHHHHHHHHHHTTTCSCHHHHHH----HHHHHHHHCCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHH----HHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 3778888888888874433333110 00123467899999999999999988754
No 31
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}
Probab=23.60 E-value=26 Score=22.87 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=19.4
Q ss_pred cCChHHHHHHHHHHHhc------CCcceEEEEe
Q 027977 98 GFKVEEAVKIRQFLKEL------DGEFLEVIFC 124 (216)
Q Consensus 98 GF~~EE~~kIR~lL~el------g~e~vkVi~v 124 (216)
|+++|++++|++++... +++.+|++..
T Consensus 1 glp~e~~~~I~~~i~~~~~~~vv~vh~lr~r~~ 33 (82)
T d3bypa1 1 GLPPEEVERIRAFLQERIRGRALEVHDLKTRRA 33 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEEEE
T ss_pred CcCHHHHHHHHHHHHhCCCCCceeeeEEEeeEE
Confidence 78999999999998753 2335555543
No 32
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.46 E-value=54 Score=23.15 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=8.8
Q ss_pred cCChHHHHHHHHHHHh
Q 027977 98 GFKVEEAVKIRQFLKE 113 (216)
Q Consensus 98 GF~~EE~~kIR~lL~e 113 (216)
-|+++-.++|+++|-+
T Consensus 32 ~l~~~t~~~L~~~lp~ 47 (163)
T d2csua3 32 TLEEKTIEELRSFLPP 47 (163)
T ss_dssp CCCHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHhCCC
Confidence 3455556666665543
No 33
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=22.65 E-value=91 Score=22.82 Aligned_cols=79 Identities=10% Similarity=0.014 Sum_probs=49.3
Q ss_pred CceEEEecCC-----hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCH-
Q 027977 91 PPALLLLGFK-----VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSG- 164 (216)
Q Consensus 91 PpaILL~GF~-----~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~- 164 (216)
+|+|+|..+- .-+..-+..+|...|++-+... . .+..+++..- . ...-.++++|+.+.
T Consensus 35 rP~v~la~lG~~a~h~ara~f~~n~f~~gGfev~~~~-----~--~~~~e~v~aa--~-------~~~a~vvvicssd~~ 98 (163)
T d7reqb2 35 RPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVE-----G--GTTAEIVEAF--K-------KSGAQVADLCSSAKV 98 (163)
T ss_dssp CCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEE-----S--CCHHHHHHHH--H-------HHTCSEEEEECCHHH
T ss_pred CCeEEEEcCCChhhhhhHHHHHHHHHHccCeeeccCC-----C--CCcHHHHHHH--H-------hCCCCEEEEecCccc
Confidence 5999998883 2344557778888888544322 1 1234443310 0 11345899999987
Q ss_pred --HHHHHHHHHcccCCCCCccEE
Q 027977 165 --EEMMMFIEAFPETGLEPAVFA 185 (216)
Q Consensus 165 --eEl~~~I~a~k~~Gl~~~ifA 185 (216)
+.+..+++++|+.|...++.+
T Consensus 99 y~~~~~~~~~aLk~ag~~~~vla 121 (163)
T d7reqb2 99 YAQQGLEVAKALKAAGAKALYLS 121 (163)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEE
T ss_pred hHHHHHHHHHHHHhcccceeEEE
Confidence 346789999999997655544
No 34
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.02 E-value=69 Score=22.81 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=45.7
Q ss_pred CCceEEEecCChH---HHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHH
Q 027977 90 GPPALLLLGFKVE---EAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEE 166 (216)
Q Consensus 90 GPpaILL~GF~~E---E~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eE 166 (216)
=|..|.++|-+.+ =-.++-..|.+.|. +|.+|.+.. .++.+ .+-+....+-.....++++. ...+.
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~---~v~pVnP~~-----~~i~G--~~~~~sl~dlp~~iD~v~i~-vp~~~ 86 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGY---DVYPVNPKY-----EEVLG--RKCYPSVLDIPDKIEVVDLF-VKPKL 86 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECTTC-----SEETT--EECBSSGGGCSSCCSEEEEC-SCHHH
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCC---EEEEECCcc-----cccCC--CcccccccccCccceEEEEE-eCHHH
Confidence 4678999999633 23445555666776 888998764 23444 22233222222233333332 45666
Q ss_pred HHHHHHHcccCCCC
Q 027977 167 MMMFIEAFPETGLE 180 (216)
Q Consensus 167 l~~~I~a~k~~Gl~ 180 (216)
+..+++..-+.|.+
T Consensus 87 ~~~~~~e~~~~g~k 100 (139)
T d2d59a1 87 TMEYVEQAIKKGAK 100 (139)
T ss_dssp HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhCCC
Confidence 77777777777764
No 35
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.73 E-value=20 Score=23.32 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCHHHHHHHHHHcccCCCC
Q 027977 153 LPRICFLSGLSGEEMMMFIEAFPETGLE 180 (216)
Q Consensus 153 ~~r~vi~sGft~eEl~~~I~a~k~~Gl~ 180 (216)
.+.=+.|.|+..+.+..+++.+++.|+.
T Consensus 51 trq~l~l~~i~~~~~~~v~~~L~~~Gl~ 78 (80)
T d1zj8a1 51 PYQKLVILDIPDALLDDLIAGLDALGLQ 78 (80)
T ss_dssp TTSCEEEEEECHHHHHHHHHHHHHTTCB
T ss_pred CCCcEEEcCCCHHHHHHHHHHHHHccCC
Confidence 4446889999999999999999999984
No 36
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=21.51 E-value=17 Score=23.16 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=35.4
Q ss_pred CCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcccCC
Q 027977 125 TEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETG 178 (216)
Q Consensus 125 t~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~~G 178 (216)
+.++..+-+..++...-.+..-.. .=-.+.+.|.|.+|+.-+.++++++|
T Consensus 18 s~~E~~~~~~~i~~g~~~d~qi~a----fL~al~~kGet~~Ei~~~~~aMr~sG 67 (70)
T d2tpta1 18 SDEEIRFFINGIRDNTISEGQIAA----LAMTIFFHDMTMPERVSLTMAMRDSG 67 (70)
T ss_dssp CHHHHHHHHHHHHHTCSCHHHHHH----HHHHHHHHCCCHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHcCCchHHHHHH----HHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 778888888888875433333110 11234578999999999999999987
No 37
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.49 E-value=18 Score=22.70 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.4
Q ss_pred EEcCCCHHHHHHHHHHcccCCC
Q 027977 158 FLSGLSGEEMMMFIEAFPETGL 179 (216)
Q Consensus 158 i~sGft~eEl~~~I~a~k~~Gl 179 (216)
-|.|.+.+.+..+++.|++.|+
T Consensus 37 ~~~G~sRetvsr~L~~l~~~gl 58 (69)
T d1i5za1 37 QIVGCSRETVGRILKMLEDQNL 58 (69)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHCCCHHHHHHHHHHHHHCCC
Confidence 3679999999999999999886
No 38
>d1u9ya2 c.61.1.2 (A:156-284) Phosphoribosylpyrophosphate synthetase {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=21.17 E-value=1e+02 Score=21.57 Aligned_cols=82 Identities=12% Similarity=0.165 Sum_probs=48.0
Q ss_pred EEecCChHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCC--CHHHHHHHHH
Q 027977 95 LLLGFKVEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGL--SGEEMMMFIE 172 (216)
Q Consensus 95 LL~GF~~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGf--t~eEl~~~I~ 172 (216)
++++-+..-..+.+.+-+.+|. ++-.+.++-....-.+. ....++ -.-+.++|+-++ |+.-|.+..+
T Consensus 3 ViVsPD~G~~~~a~~~a~~l~~---~~a~~~K~R~~~~~~~~---~~~~gd-----v~gk~viIvDDii~TGgTl~~aa~ 71 (129)
T d1u9ya2 3 IVLAPDKGALEFAKTASKILNA---EYDYLEKTRLSPTEIQI---APKTLD-----AKDRDVFIVDDIISTGGTMATAVK 71 (129)
T ss_dssp EEEESSGGGHHHHHHHHHHHTC---CEEEBC----------C---CBSSCC-----CTTCCEEEEEEECSSSHHHHHHHH
T ss_pred EEEEECccHHHHHHHHHHHcCC---CEEEEEeeeccccccee---eccccc-----ccceEEEEEcchhcccccHHHHHH
Confidence 3566776667777888888888 44455544322110000 011111 124567777766 6688999999
Q ss_pred HcccCCCCCccEEEE
Q 027977 173 AFPETGLEPAVFAAL 187 (216)
Q Consensus 173 a~k~~Gl~~~ifAvl 187 (216)
.+|+.|...++++++
T Consensus 72 ~Lk~~GA~~V~~~~t 86 (129)
T d1u9ya2 72 LLKEQGAKKIIAACV 86 (129)
T ss_dssp HHHHTTCCSEEEEEE
T ss_pred HHHhcCCcceEEEEe
Confidence 999999887765554
No 39
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}
Probab=21.02 E-value=98 Score=24.82 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=8.3
Q ss_pred HHHHHHHHHHcccCCC
Q 027977 164 GEEMMMFIEAFPETGL 179 (216)
Q Consensus 164 ~eEl~~~I~a~k~~Gl 179 (216)
-+++++++..+|+.+.
T Consensus 72 ~~~v~~~~~~~~~~~~ 87 (359)
T d1o2da_ 72 FDNVMKAVERYRNDSF 87 (359)
T ss_dssp HHHHHHHHHHHTTSCC
T ss_pred HHHHHHhhhhccccCC
Confidence 3455555555555543
No 40
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.73 E-value=27 Score=24.39 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.5
Q ss_pred CcEEEEcCCCHHHHHHHHHHcccCCC
Q 027977 154 PRICFLSGLSGEEMMMFIEAFPETGL 179 (216)
Q Consensus 154 ~r~vi~sGft~eEl~~~I~a~k~~Gl 179 (216)
.-.+.|+||+..+...+.+.+++.|-
T Consensus 43 G~~i~isGf~~~~~~~l~~~i~~~GG 68 (132)
T d1wf6a_ 43 GCRIYLCGFSGRKLDKLRRLINSGGG 68 (132)
T ss_dssp TCEEEEESCCSHHHHHHHHHHHHTTC
T ss_pred CeEEEEeeCCCHHHHHHHHHHHHcCC
Confidence 34677899999999999999888764
No 41
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.41 E-value=20 Score=22.83 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=34.7
Q ss_pred eCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcccCC
Q 027977 124 CTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPETG 178 (216)
Q Consensus 124 vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~~G 178 (216)
.+.++..+-+.+++...-.+..-.. .=-.+-+.|+|.+|+.-+.+++++.|
T Consensus 17 Ls~~E~~~~~~~i~~g~~s~~qi~a----fL~al~~kG~t~~Ei~~~t~aM~~sG 67 (68)
T d1uoua1 17 LSEADIRGFVAAVVNGSAQGAQIGA----MLMAIRLRGMDLEETSVLTQALAQSG 67 (68)
T ss_dssp CCHHHHHHHHHHHHHTCSCHHHHHH----HHHHHHHHCCCHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHH----HHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3778888888888874333322110 11124568999999999999999887
No 42
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=20.26 E-value=1e+02 Score=21.36 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchhhhhccCCCCcEEEEcCCCHHHHHHHHHHcccC
Q 027977 101 VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLEAVKVAESLPRICFLSGLSGEEMMMFIEAFPET 177 (216)
Q Consensus 101 ~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e~~k~~~~~~r~vi~sGft~eEl~~~I~a~k~~ 177 (216)
.+.++.|.++|+..+.. -|++|..-..-.-|...+... +..-..+-++++.++-..++..|++.
T Consensus 14 ~~K~~~L~~ll~~~~~k--~IIF~~s~~~~~~l~~~L~~~-----------g~~~~~~~~~~~~~~r~~~~~~f~~~ 77 (155)
T d1hv8a2 14 NERFEALCRLLKNKEFY--GLVFCKTKRDTKELASMLRDI-----------GFKAGAIHGDLSQSQREKVIRLFKQK 77 (155)
T ss_dssp GGHHHHHHHHHCSTTCC--EEEECSSHHHHHHHHHHHHHT-----------TCCEEEECSSSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCCCC--EEEEECchHHHHHHHhhhccc-----------ccccccccccchhhhhhhhhhhhhcc
Confidence 56778888888776654 356776544333444444311 12234455667888889999999864
No 43
>d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA component {Escherichia coli [TaxId: 562]}
Probab=20.04 E-value=30 Score=23.58 Aligned_cols=85 Identities=9% Similarity=0.025 Sum_probs=45.1
Q ss_pred CCceEEEecCC----hHHHHHHHHHHHhcCCcceEEEEeCCCchhchHHHHhcccccchh-hhhccCCCCcEE-EEcCCC
Q 027977 90 GPPALLLLGFK----VEEAVKIRQFLKELDGEFLEVIFCTEDMIPRSLWEAMNTKQTNLE-AVKVAESLPRIC-FLSGLS 163 (216)
Q Consensus 90 GPpaILL~GF~----~EE~~kIR~lL~elg~e~vkVi~vt~e~~~~pLGel~~~~~~d~e-~~k~~~~~~r~v-i~sGft 163 (216)
.+..+.+||.. .==..++++.|+++|++.+.+..+.-..+..-. +++=.. .+.. ..+..-..-+++ +-+-++
T Consensus 3 ikkIl~vCg~G~GSS~m~~~~l~~~lk~~gi~~i~v~~~~i~~~~~d~-DlIvt~-~~l~~~~~~~~~~~~vi~v~n~l~ 80 (97)
T d1vkra_ 3 VRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNLPPDV-DLVITH-RDLTERAMRQVPQAQHISLTNFLD 80 (97)
T ss_dssp CCEEEECCSSSSHHHHHHHHHHHHHHHHTTCTTSEEEECCTTCCCTTC-SEEEEE-HHHHHHHHHHCTTSEEEEESCTTC
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHHHHHcCCCceEEEEeEhhhCCCCC-CEEEEc-HHHHHHHHhhCCCCeEEEEEecCC
Confidence 44455566652 333457889999999987888777655443221 111111 1111 111001123455 445566
Q ss_pred HHHHHHHHHHccc
Q 027977 164 GEEMMMFIEAFPE 176 (216)
Q Consensus 164 ~eEl~~~I~a~k~ 176 (216)
..|+++++..+.+
T Consensus 81 ~~ei~~l~e~i~~ 93 (97)
T d1vkra_ 81 SGLYTSLTERLVA 93 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 7778888877654
Done!