BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027979
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NIJ|A Chain A, Yjia Protein
pdb|4IXM|A Chain A, Crystal Structure Of Zn(ii)-bound Yjia Gtpase From E. Coli
pdb|4IXM|B Chain B, Crystal Structure Of Zn(ii)-bound Yjia Gtpase From E. Coli
Length = 318
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 17 LANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQLES 72
L NGCICC+ + L AL L+ ++ D +++E TG+A+P P+ + + L
Sbjct: 60 LTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQ 119
Query: 73 AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLD 132
LD +I +VDA + Q++++ S Q+ +AD ++L K D+ +G++ +
Sbjct: 120 RYLLDGVIALVDAVHADEQMNQFTIAQS------QVGYADRILLTKTDV-----AGEA-E 167
Query: 133 ELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLH 190
+L + + IN+ A V +DL + N + +LEE+ + H
Sbjct: 168 KLHERLARINARAPVYTVTHGDIDLGLLFNTNGF----------MLEENVVSTKPRFH 215
>pdb|4IXN|A Chain A, Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Triple
Mutant Yjia Gtpase
pdb|4IXN|B Chain B, Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Triple
Mutant Yjia Gtpase
Length = 318
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 17 LANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQLES 72
L NGCI + + L AL L+ ++ D +++E TG+A+P P+ + + L
Sbjct: 60 LTNGCIAASRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQ 119
Query: 73 AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLD 132
LD +I +VDA + Q++++ S Q+ +AD ++L K D+ +G++ +
Sbjct: 120 RYLLDGVIALVDAVHADEQMNQFTIAQS------QVGYADRILLTKTDV-----AGEA-E 167
Query: 133 ELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLH 190
+L + + IN+ A V +DL + N + +LEE+ + H
Sbjct: 168 KLHERLARINARAPVYTVTHGDIDLGLLFNTNGF----------MLEENVVSTKPRFH 215
>pdb|3QN0|A Chain A, Structure Of 6-Pyruvoyltetrahydropterin Synthase
pdb|3QN0|B Chain B, Structure Of 6-Pyruvoyltetrahydropterin Synthase
pdb|3QN0|C Chain C, Structure Of 6-Pyruvoyltetrahydropterin Synthase
pdb|3QN0|D Chain D, Structure Of 6-Pyruvoyltetrahydropterin Synthase
pdb|3QN0|E Chain E, Structure Of 6-Pyruvoyltetrahydropterin Synthase
pdb|3QN0|F Chain F, Structure Of 6-Pyruvoyltetrahydropterin Synthase
pdb|3QN9|A Chain A, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli
pdb|3QN9|B Chain B, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli
Length = 141
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 42 ERLDHILL-ETTGLANPAPLASVLWLDDQLESAVRLDSIITV 82
ERLDH L + GL NP W+ DQ++ V L S + V
Sbjct: 87 ERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMV 128
>pdb|3QNA|A Chain A, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|B Chain B, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|C Chain C, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|D Chain D, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|E Chain E, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|F Chain F, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
Length = 141
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 42 ERLDHILL-ETTGLANPAPLASVLWLDDQLESAVRLDSIITV 82
ERLDH L + GL NP W+ DQ++ V L S + V
Sbjct: 87 ERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMV 128
>pdb|3LSB|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSB|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSC|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
pdb|3LSC|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
Length = 456
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 130 SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNL 189
+ D+ E+E+ + + L + V DLS+ R D + L GL+ HQ+ L
Sbjct: 12 TFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLINSHQH-----L 66
Query: 190 HDNNVRTLSICE 201
++ +R + E
Sbjct: 67 YEGAMRAIPQLE 78
>pdb|3LS9|A Chain A, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
pdb|3LS9|B Chain B, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
Length = 456
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 130 SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNL 189
+ D+ E+E+ + + L + V DLS+ R D + L GL+ HQ+ L
Sbjct: 12 TFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLINSHQH-----L 66
Query: 190 HDNNVRTLSICE 201
++ +R + E
Sbjct: 67 YEGAMRAIPQLE 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,065,944
Number of Sequences: 62578
Number of extensions: 221628
Number of successful extensions: 576
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 10
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)