BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027979
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1
Length = 393
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 108/162 (66%), Gaps = 4/162 (2%)
Query: 6 EGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLW 65
+GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K + D+ILLETTGLA+P +AS+ W
Sbjct: 90 QGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFW 149
Query: 66 LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 125
+D +L S + LD IITVVD+K L + + + EA Q+A AD++++NK DLVS E
Sbjct: 150 VDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEATRQVALADMILINKTDLVSEE 209
Query: 126 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 167
L+ L I IN L V+ + R +V LS +L+ AYD
Sbjct: 210 E----LNNLRTTIRSINGLGKVLETQRSRVHLSNILDLHAYD 247
>sp|Q9BRT8|CBWD1_HUMAN COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1
Length = 395
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 110/163 (67%), Gaps = 4/163 (2%)
Query: 6 EGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLW 65
+GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K + D+ILLETTGLA+P +AS+ W
Sbjct: 92 QGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFW 151
Query: 66 LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 125
+D +L S + LD IIT+VD+K L + + + EA Q+A AD +++NK DLV PE
Sbjct: 152 VDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINKTDLV-PE 210
Query: 126 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 168
+ + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 211 ---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
>sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2
SV=2
Length = 394
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 108/163 (66%), Gaps = 4/163 (2%)
Query: 6 EGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLW 65
+GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D+ILLETTGLA+P +AS+ W
Sbjct: 91 QGGELYEEWLELRNGCLCCSVKDNGLKAIENLMQKKGKFDYILLETTGLADPGAVASMFW 150
Query: 66 LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 125
+D +L S + LD IITVVD+K L + + + EA Q+A AD++++NK DLVS E
Sbjct: 151 VDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEATRQVALADMILINKTDLVSEE 210
Query: 126 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 168
L++L I IN L V+ + R + LS +L+ AYD
Sbjct: 211 E----LNKLRTTIRSINGLGKVLETQRSRTHLSNILDLHAYDT 249
>sp|Q5JTY5|CBWD3_HUMAN COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1
Length = 395
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 110/163 (67%), Gaps = 4/163 (2%)
Query: 6 EGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLW 65
+GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P +AS+ W
Sbjct: 92 QGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPGAVASMFW 151
Query: 66 LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 125
+D +L S + LD IIT+VD+K L + + + EA Q+A AD++++NK DLV PE
Sbjct: 152 VDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV-PE 210
Query: 126 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 168
+ + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 211 ---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
>sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1
Length = 395
Score = 146 bits (369), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 110/163 (67%), Gaps = 4/163 (2%)
Query: 6 EGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLW 65
+GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D+ILLETTGLA+P +AS+ W
Sbjct: 92 QGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFW 151
Query: 66 LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 125
+D +L S + LD IIT+VD+K L + + + EA Q+A AD +++NK DLV PE
Sbjct: 152 VDAELGSDIYLDGIITIVDSKYGLKHLAEEKPDGLINEATRQVALADAILINKTDLV-PE 210
Query: 126 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 168
+ + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 211 ---EDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
>sp|Q4V339|CBWD6_HUMAN COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1
Length = 395
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 110/163 (67%), Gaps = 4/163 (2%)
Query: 6 EGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLW 65
+GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P +AS+ W
Sbjct: 92 QGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPGAVASMFW 151
Query: 66 LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 125
+D +L S + LD IIT+VD+K L + + + EA Q+A AD++++NK DLV PE
Sbjct: 152 VDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV-PE 210
Query: 126 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 168
+ + +L + IN L ++ + R +VDLS VL+ A+D+
Sbjct: 211 ---EDVKKLRTTLRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
>sp|Q5RIA9|CBWD5_HUMAN COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1
Length = 395
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 109/163 (66%), Gaps = 4/163 (2%)
Query: 6 EGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLW 65
+GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P + S+ W
Sbjct: 92 QGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPGAVTSMFW 151
Query: 66 LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 125
+D +L S + LD IIT+VD+K L + + + EA Q+A AD++++NK DLV PE
Sbjct: 152 VDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV-PE 210
Query: 126 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 168
+ + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 211 ---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
>sp|O74310|YOG5_SCHPO COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC15D4.05 PE=3 SV=1
Length = 411
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 112/170 (65%), Gaps = 10/170 (5%)
Query: 7 GGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWL 66
G L EEWV L+NGC+CCTVK + ++ALE+++++K R D+I++ETTG+ANP PLA WL
Sbjct: 113 GEELYEEWVALSNGCMCCTVKDNGIKALEKIMRQKGRFDNIVIETTGIANPGPLAQTFWL 172
Query: 67 DDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPER 126
DD L+S V+LD I+TV+D KN ID S I QI+ AD +ILNK DL+S E
Sbjct: 173 DDALKSDVKLDGIVTVIDCKN----IDNILKDESDIGFI-QISHADCLILNKTDLISSE- 226
Query: 127 SGDSLDELEKEIHEINSLAHVIRSVRCQV-DLSEVLNCRAYDATHVTRLE 175
+L + + I +IN LA +I + ++ D+SE+L+ AY + + LE
Sbjct: 227 ---ALSVVRQTILKINCLAKIIETTYGRLDDISEILDLDAYGNENTSNLE 273
>sp|P53729|YN8H_YEAST Uncharacterized protein YNR029C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YNR029C PE=1 SV=1
Length = 429
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 121/203 (59%), Gaps = 19/203 (9%)
Query: 7 GGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE-RLDHILLETTGLANPAPLASVLW 65
G +EW++L NGC+CC++K+ V+A+E +V+R ++D+ILLET+G+A+PAP+A + W
Sbjct: 122 GSNSYQEWLDLGNGCLCCSLKNIGVKAIEDMVERSPGKIDYILLETSGIADPAPIAKMFW 181
Query: 66 LDDQLESAVRLDSIITVVDAKNLL-----FQIDKYRHL------SSYPEAIHQIAFADVV 114
D+ L S+V +D IITV+D +++L ID + H + A Q+A AD +
Sbjct: 182 QDEGLNSSVYIDGIITVLDCEHILKCLDDISIDAHWHGDKVGLEGNLTIAHFQLAMADRI 241
Query: 115 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 174
I+NK D + E S + + +L++ + EINS+A + + + +L+ AYD+ R+
Sbjct: 242 IMNKYDTI--EHSPEMVKQLKERVREINSIAPMFFTKYSDTPIQNLLDIHAYDS---VRI 296
Query: 175 EGLLEEHQYKSSQNLHDNNVRTL 197
+L+ + +HD+ + T+
Sbjct: 297 SDILDSGS--GNGTIHDDRMGTI 317
>sp|Q869Q0|Y4527_DICDI COBW domain-containing protein DDB_G0274527 OS=Dictyostelium
discoideum GN=DDB_G0274527 PE=3 SV=1
Length = 475
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 23/188 (12%)
Query: 11 VEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLD--- 67
VE VE++NGCICCT++ L+ + +L + K R D++++E++G++ P P+A +
Sbjct: 106 VEAVVEMSNGCICCTMREDLLVEVTKLAKEK-RFDYLIIESSGISEPLPIAETFTFEIDG 164
Query: 68 --DQLESAVRLDSIITVVDAKNLLFQI-------DKYRHLSSYPEA------IHQIAFAD 112
+ L+ +LD+++TVVD L Q DK + E + Q+ F++
Sbjct: 165 SIENLKDYTKLDTMVTVVDCSTWLEQYQSGESLKDKDMQATDQDERSLVDLLLDQVEFSN 224
Query: 113 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT 172
V++LNK DLVS ER + +E I IN A ++RS V L E+LN +D +
Sbjct: 225 VILLNKCDLVSEER----VKTIEGLIKHINPEARLLRSTNSVVPLKEILNTGLFDFKKAS 280
Query: 173 RLEGLLEE 180
G L+E
Sbjct: 281 EHPGWLKE 288
>sp|P94400|YCIC_BACSU Putative metal chaperone YciC OS=Bacillus subtilis (strain 168)
GN=yciC PE=2 SV=1
Length = 397
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 23/187 (12%)
Query: 12 EEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQ- 69
E+ VE++NGCICCT++ L+ +E+L + R D+I++E+TG++ P P+A ++D++
Sbjct: 61 EKLVEMSNGCICCTLREDLLIEVEKLA-KDGRFDYIVIESTGISEPIPVAQTFSYIDEEM 119
Query: 70 ---LESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA-------------IHQIAFADV 113
L +LD+++TVVDA L EA I QI F DV
Sbjct: 120 GIDLTKFCQLDTMVTVVDANRFWHDYQSGESLLDRKEALGEKDEREIADLLIDQIEFCDV 179
Query: 114 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR 173
+ILNK DLVS + L++LE + ++ A IRSV+ V E+L+ ++ +
Sbjct: 180 LILNKCDLVSEQE----LEQLENVLRKLQPRARFIRSVKGNVKPQEILHTGLFNFEEASG 235
Query: 174 LEGLLEE 180
G ++E
Sbjct: 236 SAGWIQE 242
>sp|Q9HZQ2|COBW_PSEAE Protein CobW OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 /
1C / PRS 101 / LMG 12228) GN=cobW PE=3 SV=1
Length = 375
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 24/174 (13%)
Query: 16 ELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAV 74
ELANGC+CCTV+ + +LV R+ LD IL+ET+GLA P PL W ++ +A
Sbjct: 96 ELANGCLCCTVQEEFFPVMRELVARRGDLDQILIETSGLALPKPLVQAFQW--PEIRNAC 153
Query: 75 RLDSIITVVDAKNLLF--------QIDKYR-------HLSSYPEAIH-QIAFADVVILNK 118
+D++ITVVD+ + Q+D+ R H S E Q+A AD+VILNK
Sbjct: 154 TVDAVITVVDSPAVAAGTFAAHPEQVDQQRRQDPNLDHESPLHELFEDQLASADLVILNK 213
Query: 119 VDLVSPERSGDSLDELEKEI-HEINSLAHVIRSVRCQVDLSEVLNCRAYDATHV 171
D + E +L + EI E+ + ++ + R ++ L +L A H+
Sbjct: 214 ADQLDAE----ALARVRAEIAGELPAAVKIVEASRGELPLPVLLGLNAEAELHI 263
>sp|P31521|P47K_PSECL 47 kDa protein OS=Pseudomonas chlororaphis PE=3 SV=1
Length = 419
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 97/189 (51%), Gaps = 29/189 (15%)
Query: 12 EEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQ- 69
+E +E++NGCICCT++ L++ + L R++R D++L+E+TG++ P P+A +LD +
Sbjct: 67 DELIEMSNGCICCTLRADLLEQISDLA-RQQRFDYLLIESTGISEPMPVAETFAFLDTEG 125
Query: 70 --LESAVRLDSIITVVDAKNL---------LFQIDKYRHLSSYPEA---IHQIAFADVVI 115
L RLD+++TVVD + + D H S+ A I Q+ +A+V++
Sbjct: 126 FSLSELARLDTLVTVVDGSQFQALLESTDTVARADTEAHTSTRHLADLLIEQVEYANVIL 185
Query: 116 LNKVDLVSPERSGDSLDELEKEIHEI----NSLAHVIRSVRCQVDLSEVLNCRAYDATHV 171
+NK DL+ + + +H I N A ++ V LS +L+ +D +
Sbjct: 186 VNKRDLID--------EPGYQAVHAILAGLNPSARIMPMAHGNVALSSLLDTHLFDLPSL 237
Query: 172 TRLEGLLEE 180
G + +
Sbjct: 238 AASPGWMRK 246
>sp|A6NM15|CBWD7_HUMAN Putative COBW domain-containing protein 7 OS=Homo sapiens GN=CBWD7
PE=5 SV=3
Length = 247
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 63 VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 122
+ W+D +L S + LD IIT+VD+K L + + + EA Q+A AD++++NK DLV
Sbjct: 1 MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 60
Query: 123 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 168
PE + + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 61 -PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 102
>sp|P29937|COBW_PSEDE Protein CobW OS=Pseudomonas denitrificans GN=cobW PE=3 SV=3
Length = 354
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 19/128 (14%)
Query: 12 EEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQL 70
++ +EL NGCICCTV + + +L++R+ R DHI++ET+GLA P PL A+ W D +
Sbjct: 68 DDIIELTNGCICCTVADDFIPTMTKLLERENRPDHIIIETSGLALPQPLIAAFNWPDIRS 127
Query: 71 E---------------SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-QIAFADVV 114
E +A R VDA L + D H S E Q+ AD++
Sbjct: 128 EVTVDGVVTVVDSAAVAAGRFADDHDKVDA--LRVEDDNLDHESPIEELFEDQLTAADLI 185
Query: 115 ILNKVDLV 122
+LNK DL+
Sbjct: 186 VLNKTDLI 193
>sp|P24203|YJIA_ECOLI Uncharacterized GTP-binding protein YjiA OS=Escherichia coli
(strain K12) GN=yjiA PE=1 SV=3
Length = 318
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 17 LANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQLES 72
L NGCICC+ + L AL L+ ++ D +++E TG+A+P P+ + + L
Sbjct: 60 LTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQ 119
Query: 73 AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLD 132
LD +I +VDA + Q++++ S Q+ +AD ++L K D+ +G++ +
Sbjct: 120 RYLLDGVIALVDAVHADEQMNQFTIAQS------QVGYADRILLTKTDV-----AGEA-E 167
Query: 133 ELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLH 190
+L + + IN+ A V +DL + N + +LEE+ + H
Sbjct: 168 KLHERLARINARAPVYTVTHGDIDLGLLFNTNGF----------MLEENVVSTKPRFH 215
>sp|P33030|YEIR_ECOLI Uncharacterized protein YeiR OS=Escherichia coli (strain K12)
GN=yeiR PE=3 SV=2
Length = 328
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 30/198 (15%)
Query: 6 EGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLW 65
+ GAL++E + GC+CC + L L+ R+ + D +L+E TGL +P + +L
Sbjct: 51 DSGALLKE---IPGGCMCCVNGLPMQVGLNTLL-RQGKPDRLLIEPTGLGHPKQILDLL- 105
Query: 66 LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 125
E + L + + ++D + LL + +S Q+A AD+++ NK D +PE
Sbjct: 106 TAPVYEPWIDLRATLCILDPRLLLDEKS-----ASNENFRDQLAAADIIVANKSDRTTPE 160
Query: 126 RSGDSLDELEKEIHEINSLAHVIRSVRCQVD----------LSEVLNCRAYDATHVTRLE 175
S L++ + +I S +VD L+E+ A+ HV + +
Sbjct: 161 ----SEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVK-K 215
Query: 176 GL----LEEHQ-YKSSQN 188
GL L EHQ ++ S N
Sbjct: 216 GLAALSLPEHQRWRRSLN 233
>sp|B2UPE7|HFLX_AKKM8 GTPase HflX OS=Akkermansia muciniphila (strain ATCC BAA-835)
GN=hflX PE=3 SV=1
Length = 437
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 40 RKERLDH----ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY 95
RK L H +L +T G P V LE AV D +I VVDA + +
Sbjct: 251 RKIELPHGQPLLLTDTVGFIRNLPHRLVEAFKSTLEEAVLADFLIQVVDASD----PEAV 306
Query: 96 RHLSSYPEAIHQIAFAD---VVILNKVDLVSPERSG 128
RH + E ++++ D +V+LNKVDLV ER G
Sbjct: 307 RHYETTLEVLNELGAGDKPMIVVLNKVDLVPEERRG 342
>sp|C6A0T3|CPGS_THESM Cyclic 2,3-diphosphoglycerate synthetase OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=cpgS PE=3 SV=1
Length = 434
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 31/151 (20%)
Query: 20 GCICCT---VKHSLVQALEQLVQRKERL--DHILLETTGLANPAPLASVLWLDDQLESAV 74
GC C V S + + ++ E+L D ++LE +G PA V
Sbjct: 204 GCRRCGGGMVGFSFFDIVNKGIKLAEKLEGDIVILEGSGATFPA---------------V 248
Query: 75 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDEL 134
+ D ITVV A + I Y +I AD++++ D+VS E+ ++++
Sbjct: 249 KADKYITVVGATQRIEFIKSYF-------GPFRIGLADLIVITLADMVSKEK----IEKI 297
Query: 135 EKEIHEINSLAHVIRSVRCQVDLSEVLNCRA 165
+K I IN A + + LSE+ +A
Sbjct: 298 QKIIESINPDAEIHLTAFKPRPLSEIKGKKA 328
>sp|A9KLX9|MNME_CLOPH tRNA modification GTPase MnmE OS=Clostridium phytofermentans
(strain ATCC 700394 / DSM 18823 / ISDg) GN=mnmE PE=3
SV=1
Length = 458
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 35/172 (20%)
Query: 48 LLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 107
L++T G+ + L L ++ L+SA D II V+DA L Q DK E +
Sbjct: 273 LIDTAGIRETSDLVEKLGVEKSLKSAKEADLIICVIDASTPLNQDDK--------EILEF 324
Query: 108 IA-FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 166
I +V+LNK DL DS+ E EK IN L + +L A
Sbjct: 325 IKDRKAIVLLNKSDL-------DSVIEEEK----INLLTN-----------KPILKISAI 362
Query: 167 DATHVTRLEGLLEEHQYKSSQNLHD----NNVRTLSICEPLAVNLDKVILQI 214
D T + LE + E ++ + + +D N+R + V+L++VI+ I
Sbjct: 363 DQTGIKDLEQTITEMFFEGNISFNDEIYITNMRHKNALVEAKVSLEQVIVSI 414
>sp|Q038V7|ADDA_LACC3 ATP-dependent helicase/nuclease subunit A OS=Lactobacillus casei
(strain ATCC 334) GN=addA PE=3 SV=1
Length = 1234
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 46 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-------LFQIDKYRHL 98
H+LL+ LA P +AS+ L DQL + +I V AK++ F+ D R L
Sbjct: 1067 HLLLQLVDLAKPITMASLRALRDQLTTT----QVIAVDVAKHIDLTALIRFFETDLGRLL 1122
Query: 99 SSYPEAIHQ 107
+ P+ +H+
Sbjct: 1123 LAKPQQVHR 1131
>sp|B3WEJ1|ADDA_LACCB ATP-dependent helicase/nuclease subunit A OS=Lactobacillus casei
(strain BL23) GN=addA PE=3 SV=1
Length = 1234
Score = 31.6 bits (70), Expect = 4.3, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 46 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-------LFQIDKYRHL 98
H+LL+ LA P +AS+ L DQL + +I V AK++ F+ D R L
Sbjct: 1067 HLLLQLVDLAKPITMASLRALRDQLTT----KQVIAVDVAKHIDLTALIRFFETDLGRLL 1122
Query: 99 SSYPEAIHQ 107
+ P+ +H+
Sbjct: 1123 LAKPQQVHR 1131
>sp|Q5HAY9|ERA_EHRRW GTPase Era OS=Ehrlichia ruminantium (strain Welgevonden) GN=era
PE=3 SV=1
Length = 296
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 38 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH 97
V E + I ++T G+ +P + S ++++I +VD KN L Q H
Sbjct: 50 VSNHENVQLIFIDTPGIFSPKTKLEKFLVKHAWMSLKGIENVIVLVDVKNYLNQ-----H 104
Query: 98 LSSYPEAIHQIAFADVVILNKVDLV 122
L + I +++LNK+D+V
Sbjct: 105 LKKIIDRIKHSNLNAILVLNKIDIV 129
>sp|Q5FFN4|ERA_EHRRG GTPase Era OS=Ehrlichia ruminantium (strain Gardel) GN=era PE=3
SV=1
Length = 296
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 38 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH 97
V E + I ++T G+ +P + S ++++I +VD KN L Q H
Sbjct: 50 VSNHENVQLIFIDTPGIFSPKTKLEKFLVKHAWMSLKGIENVIVLVDVKNYLNQ-----H 104
Query: 98 LSSYPEAIHQIAFADVVILNKVDLV 122
L + I +++LNK+D+V
Sbjct: 105 LKKIIDRIKHSNLNAILVLNKIDIV 129
>sp|Q5WHR5|RUVB_BACSK Holliday junction ATP-dependent DNA helicase RuvB OS=Bacillus
clausii (strain KSM-K16) GN=ruvB PE=3 SV=1
Length = 333
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 25 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLD----------DQLESAV 74
TVKH+L +E R+E LDH+LL LA+++ + +E +
Sbjct: 34 TVKHNLAVFMEAAKMREEALDHVLLYGPPGLGKTTLAAIIAAEMGGELRTTSGPAIERSG 93
Query: 75 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 113
L +I+T ++ ++LF ID+ L+ E + A D
Sbjct: 94 DLAAILTALEPGDVLF-IDEIHRLNRTVEEVLYPAMEDF 131
>sp|Q8TVE5|IF2G_METKA Translation initiation factor 2 subunit gamma OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=eif2g PE=3 SV=1
Length = 412
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 70 LESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL-NKVDLVSPERSG 128
L A +D+ I V+ A Q HL A+ I DV+++ NK+DLV+PE +
Sbjct: 101 LSGAAIMDAAILVIAANEPCPQPQTREHLM----ALEIIGTEDVIVVQNKIDLVTPEEAR 156
Query: 129 DSLDE----LEKEIH 139
+ ++ LE+E H
Sbjct: 157 EHYEQIVQFLEEETH 171
>sp|B9DNL3|ERA_STACT GTPase Era OS=Staphylococcus carnosus (strain TM300) GN=era PE=3
SV=1
Length = 299
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 47 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 106
I ++T G+ P + + +D++I +V+A + + D+Y E +
Sbjct: 57 IFVDTPGIHKPKHKLGDYMMKVAKNTLTEVDAVIFMVNANEEIGRGDEY-----IMEMLK 111
Query: 107 QIAFADVVILNKVDLVSPERSGDSLDELEKEIH 139
I +++NK+DLV P++ ++ EK +H
Sbjct: 112 NIKTPVFLVINKIDLVHPDQIMPIIESYEKHMH 144
>sp|Q2YT12|ERA_STAAB GTPase Era OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=era PE=3 SV=1
Length = 299
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 22/148 (14%)
Query: 47 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 106
I ++T G+ P + + +D+I+ +V+A + + D+Y E +
Sbjct: 57 IFIDTPGIHKPKHKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEY-----IIEMLK 111
Query: 107 QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 166
+ ++LNK+DLV P DEL +I E S +D +E++ A
Sbjct: 112 NVKTPVFLVLNKIDLVHP-------DELMPKIEEYQSY----------MDFTEIVPISAL 154
Query: 167 DATHVTRLEGLLEEHQYKSSQNLHDNNV 194
D +V +L+ + + + D+ +
Sbjct: 155 DGLNVDHFIDVLKTYLPEGPKYYPDDQI 182
>sp|O26361|IF2G_METTH Translation initiation factor 2 subunit gamma
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=eif2g PE=3 SV=1
Length = 408
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 70 LESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL-NKVDLVSPERSG 128
L A +D I V+ A Q HL A+ I DV+++ NK+D+VS ER+
Sbjct: 100 LSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDVIGVKDVIVVQNKIDIVSKERAL 155
Query: 129 DSLDELEK 136
+S E+++
Sbjct: 156 ESYREIKE 163
>sp|A5N206|RUVB_CLOK5 Holliday junction ATP-dependent DNA helicase RuvB OS=Clostridium
kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
GN=ruvB PE=3 SV=1
Length = 350
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 26 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLD----------DQLESAVR 75
VK L +E RKE LDH+L LA+++ L+ +E A
Sbjct: 35 VKEKLKIFIEAAKNRKEALDHVLFYGPPGLGKTTLANIIALEMGGNLKITSGPAIERAGD 94
Query: 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI 115
L +I+T +D +++LF ID+ L+ E I A D +
Sbjct: 95 LAAILTGLDDRDVLF-IDEIHRLNRSVEEILYPAMEDYAL 133
>sp|B9E5Q8|RUVB_CLOK1 Holliday junction ATP-dependent DNA helicase RuvB OS=Clostridium
kluyveri (strain NBRC 12016) GN=ruvB PE=3 SV=1
Length = 350
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 26 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLD----------DQLESAVR 75
VK L +E RKE LDH+L LA+++ L+ +E A
Sbjct: 35 VKEKLKIFIEAAKNRKEALDHVLFYGPPGLGKTTLANIIALEMGGNLKITSGPAIERAGD 94
Query: 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI 115
L +I+T +D +++LF ID+ L+ E I A D +
Sbjct: 95 LAAILTGLDDRDVLF-IDEIHRLNRSVEEILYPAMEDYAL 133
>sp|Q1E024|MED5_COCIM Mediator of RNA polymerase II transcription subunit 5
OS=Coccidioides immitis (strain RS) GN=NUT1 PE=3 SV=2
Length = 1052
Score = 30.4 bits (67), Expect = 9.6, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 4 EGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASV 63
EG GA+V+ +E+ + +L L +R + LD ILL + PL S+
Sbjct: 477 EGNAGAIVDAIIEVMHNLCSRKETMTLKSICNSLSRRPQTLDIILLFKSPSFILQPLCSL 536
Query: 64 L----WLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH 97
L W +DQ ES + D +++ LL KY++
Sbjct: 537 LDAWKWDEDQGESQLVYDEFGSIL----LLVLAFKYKY 570
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,637,424
Number of Sequences: 539616
Number of extensions: 2898658
Number of successful extensions: 9552
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 9498
Number of HSP's gapped (non-prelim): 87
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)