Query 027979
Match_columns 216
No_of_seqs 198 out of 1486
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 06:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nij_A Hypothetical protein YJ 100.0 7.6E-30 2.6E-34 220.1 18.1 197 2-215 37-245 (318)
2 2wsm_A Hydrogenase expression/ 98.6 2.8E-08 9.5E-13 79.6 5.3 112 14-152 83-195 (221)
3 2hf9_A Probable hydrogenase ni 98.2 9E-07 3.1E-11 70.9 3.5 124 13-161 90-215 (226)
4 3p32_A Probable GTPase RV1496/ 98.0 4.1E-06 1.4E-10 72.6 4.7 126 14-161 144-275 (355)
5 2www_A Methylmalonic aciduria 98.0 1.3E-05 4.3E-10 69.4 6.9 114 16-151 141-259 (349)
6 2p67_A LAO/AO transport system 97.9 3.3E-05 1.1E-09 66.5 8.1 113 17-151 116-241 (341)
7 2qpt_A EH domain-containing pr 97.8 3E-05 1E-09 71.1 7.0 109 18-151 140-263 (550)
8 1yrb_A ATP(GTP)binding protein 97.6 3.2E-05 1.1E-09 63.1 2.8 101 18-124 80-186 (262)
9 2qm8_A GTPase/ATPase; G protei 97.4 0.00034 1.2E-08 60.1 7.9 108 23-151 126-241 (337)
10 4dhe_A Probable GTP-binding pr 96.7 0.0021 7.1E-08 50.7 5.3 99 44-151 79-191 (223)
11 1svi_A GTP-binding protein YSX 96.2 0.0082 2.8E-07 46.0 5.7 97 45-151 70-175 (195)
12 1wf3_A GTP-binding protein; GT 96.1 0.01 3.5E-07 50.0 6.6 95 44-152 55-154 (301)
13 3pqc_A Probable GTP-binding pr 95.9 0.016 5.4E-07 44.1 6.1 98 44-151 68-174 (195)
14 3iev_A GTP-binding protein ERA 95.2 0.012 4E-07 49.6 3.4 107 43-161 58-173 (308)
15 2ce2_X GTPase HRAS; signaling 94.4 0.35 1.2E-05 35.0 9.4 88 44-151 51-145 (166)
16 1xjc_A MOBB protein homolog; s 94.3 0.013 4.3E-07 45.4 1.3 49 13-63 65-115 (169)
17 1u8z_A RAS-related protein RAL 94.1 0.33 1.1E-05 35.3 8.9 89 44-151 52-147 (168)
18 3dm5_A SRP54, signal recogniti 94.1 0.19 6.3E-06 44.7 8.5 94 42-153 181-275 (443)
19 1z0f_A RAB14, member RAS oncog 94.0 0.35 1.2E-05 35.7 8.9 88 45-151 65-158 (179)
20 2a9k_A RAS-related protein RAL 94.0 0.4 1.4E-05 35.6 9.3 88 45-151 67-161 (187)
21 2bov_A RAla, RAS-related prote 93.6 0.72 2.5E-05 35.0 10.2 98 45-161 63-168 (206)
22 1z08_A RAS-related protein RAB 93.2 0.35 1.2E-05 35.4 7.6 88 45-151 56-149 (170)
23 2y8e_A RAB-protein 6, GH09086P 93.1 0.42 1.4E-05 35.3 7.9 88 45-151 64-157 (179)
24 2fg5_A RAB-22B, RAS-related pr 93.1 0.42 1.4E-05 36.3 8.1 88 45-151 73-166 (192)
25 2erx_A GTP-binding protein DI- 92.7 0.85 2.9E-05 33.2 9.2 88 45-151 52-147 (172)
26 3bc1_A RAS-related protein RAB 92.6 0.9 3.1E-05 33.8 9.3 88 45-151 71-165 (195)
27 1zbd_A Rabphilin-3A; G protein 92.4 1.4 4.8E-05 33.4 10.3 98 45-161 58-162 (203)
28 2ged_A SR-beta, signal recogni 92.4 0.3 1E-05 36.9 6.3 79 44-138 91-181 (193)
29 2bme_A RAB4A, RAS-related prot 92.2 0.97 3.3E-05 33.6 9.0 88 45-151 60-153 (186)
30 2gf9_A RAS-related protein RAB 92.1 0.68 2.3E-05 34.8 8.1 88 45-151 72-165 (189)
31 1ky3_A GTP-binding protein YPT 92.1 0.76 2.6E-05 33.9 8.3 100 45-161 59-169 (182)
32 1ega_A Protein (GTP-binding pr 92.0 0.4 1.4E-05 39.9 7.1 95 45-151 57-155 (301)
33 2il1_A RAB12; G-protein, GDP, 91.9 1.1 3.7E-05 33.9 9.1 90 44-151 75-170 (192)
34 2efe_B Small GTP-binding prote 91.6 1.5 5.1E-05 32.3 9.4 88 45-151 62-155 (181)
35 2bcg_Y Protein YP2, GTP-bindin 91.5 0.82 2.8E-05 34.9 8.0 98 45-161 58-162 (206)
36 1c1y_A RAS-related protein RAP 91.4 1.4 4.8E-05 31.8 9.0 89 45-151 52-147 (167)
37 2g6b_A RAS-related protein RAB 91.4 1.3 4.5E-05 32.6 8.9 88 45-151 61-154 (180)
38 1kao_A RAP2A; GTP-binding prot 91.3 1.8 6.3E-05 31.1 9.5 87 46-151 53-146 (167)
39 2oil_A CATX-8, RAS-related pro 91.2 1.2 4.1E-05 33.5 8.7 86 47-151 77-168 (193)
40 3tw8_B RAS-related protein RAB 91.1 0.65 2.2E-05 34.3 6.9 65 76-151 82-151 (181)
41 3i8s_A Ferrous iron transport 91.1 0.11 3.7E-06 42.8 2.6 94 44-151 50-149 (274)
42 1vg8_A RAS-related protein RAB 91.1 0.69 2.3E-05 35.2 7.2 99 45-162 58-167 (207)
43 1lnz_A SPO0B-associated GTP-bi 91.0 0.022 7.5E-07 48.9 -1.7 44 75-124 236-289 (342)
44 2hup_A RAS-related protein RAB 91.0 1.8 6.1E-05 33.0 9.6 89 45-151 79-173 (201)
45 1wms_A RAB-9, RAB9, RAS-relate 90.9 2.6 9E-05 30.8 10.2 88 45-151 57-154 (177)
46 2j37_W Signal recognition part 90.7 0.53 1.8E-05 42.4 7.0 74 42-125 182-256 (504)
47 2h57_A ADP-ribosylation factor 90.7 1.9 6.6E-05 32.3 9.4 89 44-151 67-167 (190)
48 3sjy_A Translation initiation 90.6 0.43 1.5E-05 41.4 6.2 104 44-161 75-183 (403)
49 2yc2_C IFT27, small RAB-relate 90.5 1.4 4.6E-05 33.4 8.4 88 45-151 74-171 (208)
50 1z0j_A RAB-22, RAS-related pro 90.5 1.8 6E-05 31.4 8.8 89 44-151 55-149 (170)
51 3k53_A Ferrous iron transport 90.4 0.33 1.1E-05 39.5 5.0 86 45-151 51-146 (271)
52 3tkl_A RAS-related protein RAB 90.4 1.5 5E-05 32.9 8.4 98 45-161 66-170 (196)
53 3q72_A GTP-binding protein RAD 90.3 2.8 9.4E-05 30.3 9.7 88 45-151 50-144 (166)
54 1x3s_A RAS-related protein RAB 90.3 1.5 5E-05 32.8 8.3 87 45-151 65-158 (195)
55 1jny_A EF-1-alpha, elongation 90.3 0.8 2.7E-05 40.2 7.6 101 43-151 83-193 (435)
56 2fu5_C RAS-related protein RAB 90.3 1.1 3.9E-05 33.2 7.6 99 44-161 57-162 (183)
57 3iby_A Ferrous iron transport 90.2 0.25 8.4E-06 40.3 4.0 100 45-161 49-158 (256)
58 3clv_A RAB5 protein, putative; 90.2 2 6.9E-05 32.0 9.1 88 44-151 93-184 (208)
59 2fn4_A P23, RAS-related protei 89.9 1.5 5.1E-05 32.2 8.0 88 45-151 58-152 (181)
60 2nzj_A GTP-binding protein REM 89.9 3 0.0001 30.3 9.7 98 45-161 53-160 (175)
61 3con_A GTPase NRAS; structural 89.9 1.4 4.9E-05 32.9 8.0 87 45-151 70-163 (190)
62 1z2a_A RAS-related protein RAB 89.6 0.74 2.5E-05 33.5 6.0 88 45-151 55-147 (168)
63 3p26_A Elongation factor 1 alp 89.6 0.43 1.5E-05 42.5 5.4 93 43-151 110-218 (483)
64 2hxs_A RAB-26, RAS-related pro 89.6 1.8 6.1E-05 31.8 8.2 89 44-151 56-153 (178)
65 3kkq_A RAS-related protein M-R 89.5 1.5 5.2E-05 32.5 7.8 95 48-161 70-173 (183)
66 4bas_A ADP-ribosylation factor 88.9 1.1 3.7E-05 33.8 6.6 92 43-151 62-169 (199)
67 1upt_A ARL1, ADP-ribosylation 88.3 1.5 5.2E-05 31.9 7.0 76 44-138 51-133 (171)
68 4dcu_A GTP-binding protein ENG 88.3 0.6 2.1E-05 41.1 5.4 50 111-162 308-361 (456)
69 2fh5_B SR-beta, signal recogni 88.2 1.7 6E-05 33.2 7.5 79 44-139 54-141 (214)
70 1g16_A RAS-related protein SEC 88.2 2.1 7.2E-05 31.0 7.7 87 45-151 53-145 (170)
71 1zj6_A ADP-ribosylation factor 88.1 1.7 5.7E-05 32.6 7.2 89 44-151 60-158 (187)
72 1z06_A RAS-related protein RAB 87.8 2.2 7.5E-05 31.9 7.7 88 45-151 70-165 (189)
73 2gf0_A GTP-binding protein DI- 87.7 4.9 0.00017 29.9 9.7 97 45-161 57-162 (199)
74 2f7s_A C25KG, RAS-related prot 87.7 1.1 3.6E-05 34.5 5.9 99 44-161 84-190 (217)
75 2yv5_A YJEQ protein; hydrolase 87.5 1 3.5E-05 37.5 6.0 81 74-163 78-162 (302)
76 2yhs_A FTSY, cell division pro 87.4 2.6 8.8E-05 38.0 8.9 110 42-170 374-487 (503)
77 1u0l_A Probable GTPase ENGC; p 87.1 0.85 2.9E-05 37.9 5.3 79 75-163 84-166 (301)
78 3kl4_A SRP54, signal recogniti 87.1 3 0.0001 36.8 9.1 93 42-153 178-274 (433)
79 2a5j_A RAS-related protein RAB 86.8 3 0.0001 31.3 8.0 65 76-151 94-164 (191)
80 2ew1_A RAS-related protein RAB 86.8 3.8 0.00013 31.4 8.7 97 46-161 77-180 (201)
81 1zun_B Sulfate adenylate trans 86.8 0.88 3E-05 39.8 5.5 93 45-151 105-204 (434)
82 2xtp_A GTPase IMAP family memb 86.7 2.1 7.2E-05 34.1 7.4 69 45-124 72-154 (260)
83 1ksh_A ARF-like protein 2; sma 86.6 1.3 4.6E-05 32.9 5.9 88 45-151 63-160 (186)
84 1nrj_B SR-beta, signal recogni 86.4 1.4 4.7E-05 33.9 5.9 38 44-86 55-93 (218)
85 3a1s_A Iron(II) transport prot 86.3 0.81 2.8E-05 37.1 4.7 97 44-161 52-158 (258)
86 2atv_A RERG, RAS-like estrogen 86.1 4.1 0.00014 30.6 8.5 86 46-151 78-170 (196)
87 2p5s_A RAS and EF-hand domain 86.0 6 0.00021 29.8 9.4 62 46-122 79-146 (199)
88 4dzz_A Plasmid partitioning pr 86.0 5.9 0.0002 29.9 9.4 88 28-142 63-158 (206)
89 2c78_A Elongation factor TU-A; 85.6 1.2 4.3E-05 38.4 5.8 94 44-151 75-174 (405)
90 3cpj_B GTP-binding protein YPT 85.6 2.6 9E-05 32.6 7.3 75 76-161 86-167 (223)
91 1ek0_A Protein (GTP-binding pr 85.4 6.2 0.00021 28.3 8.9 90 45-151 53-149 (170)
92 1s0u_A EIF-2-gamma, translatio 85.3 1.6 5.4E-05 37.8 6.3 93 45-151 82-178 (408)
93 3lxx_A GTPase IMAP family memb 85.2 2.5 8.4E-05 33.3 7.0 90 45-144 79-184 (239)
94 2b6h_A ADP-ribosylation factor 85.1 2.8 9.7E-05 31.6 7.1 76 44-138 73-155 (192)
95 2o52_A RAS-related protein RAB 85.0 3.5 0.00012 31.3 7.6 75 76-161 98-179 (200)
96 2h17_A ADP-ribosylation factor 84.7 2.5 8.5E-05 31.4 6.5 76 44-138 65-147 (181)
97 4dsu_A GTPase KRAS, isoform 2B 84.6 6.3 0.00022 28.9 8.8 96 46-161 54-157 (189)
98 1zd9_A ADP-ribosylation factor 84.6 2.4 8.3E-05 31.7 6.5 66 45-125 68-140 (188)
99 2v3c_C SRP54, signal recogniti 84.6 7.3 0.00025 34.1 10.3 70 42-124 179-253 (432)
100 1m2o_B GTP-binding protein SAR 84.5 2.4 8.2E-05 32.0 6.4 77 45-140 68-151 (190)
101 1f6b_A SAR1; gtpases, N-termin 84.5 3 0.0001 31.7 7.0 55 75-140 92-153 (198)
102 3ihw_A Centg3; RAS, centaurin, 84.2 6.4 0.00022 29.4 8.7 78 76-161 86-171 (184)
103 3gee_A MNME, tRNA modification 83.5 1.4 4.9E-05 39.2 5.3 78 44-125 281-359 (476)
104 3dz8_A RAS-related protein RAB 82.9 5.3 0.00018 29.8 7.8 65 76-151 96-166 (191)
105 1f60_A Elongation factor EEF1A 82.9 2.6 8.8E-05 37.2 6.7 100 44-151 85-192 (458)
106 3t5g_A GTP-binding protein RHE 82.8 5.3 0.00018 29.3 7.7 88 45-151 55-149 (181)
107 1moz_A ARL1, ADP-ribosylation 82.7 3.4 0.00012 30.4 6.5 76 44-138 62-144 (183)
108 3reg_A RHO-like small GTPase; 82.3 6.1 0.00021 29.5 7.9 69 75-150 94-167 (194)
109 1r8s_A ADP-ribosylation factor 81.9 6.9 0.00024 28.0 7.9 67 44-125 44-117 (164)
110 3izq_1 HBS1P, elongation facto 81.5 2 6.7E-05 39.6 5.5 37 44-88 245-281 (611)
111 3geh_A MNME, tRNA modification 81.1 0.97 3.3E-05 40.2 3.3 74 44-125 272-346 (462)
112 3cph_A RAS-related protein SEC 81.0 6.4 0.00022 29.7 7.7 64 76-151 93-162 (213)
113 3oes_A GTPase rhebl1; small GT 80.9 3.7 0.00013 31.0 6.3 88 45-151 73-167 (201)
114 3cbq_A GTP-binding protein REM 80.9 9.7 0.00033 28.7 8.7 97 46-161 74-179 (195)
115 3q85_A GTP-binding protein REM 80.8 8 0.00027 27.8 7.9 89 45-151 52-147 (169)
116 3t1o_A Gliding protein MGLA; G 80.6 10 0.00036 27.8 8.7 89 46-151 76-172 (198)
117 1r2q_A RAS-related protein RAB 80.3 10 0.00035 27.0 8.4 88 45-151 56-149 (170)
118 3o47_A ADP-ribosylation factor 80.3 3.1 0.0001 34.9 6.0 90 44-151 209-307 (329)
119 2qtf_A Protein HFLX, GTP-bindi 79.8 6.5 0.00022 33.5 8.0 76 45-124 227-307 (364)
120 1d2e_A Elongation factor TU (E 79.7 1.8 6E-05 37.4 4.4 95 43-151 65-165 (397)
121 2lkc_A Translation initiation 79.6 5.3 0.00018 29.1 6.6 53 76-141 79-134 (178)
122 1wb1_A Translation elongation 79.5 1.1 3.7E-05 40.0 3.0 93 45-151 74-169 (482)
123 1t9h_A YLOQ, probable GTPase E 79.4 2.3 7.9E-05 35.6 4.9 116 19-150 33-156 (307)
124 1kk1_A EIF2gamma; initiation o 79.0 2 6.8E-05 37.2 4.5 93 45-151 84-180 (410)
125 3j2k_7 ERF3, eukaryotic polype 78.4 4.9 0.00017 35.1 6.9 67 44-124 95-170 (439)
126 1j8m_F SRP54, signal recogniti 78.4 18 0.00061 29.8 10.1 91 42-153 179-275 (297)
127 3dpu_A RAB family protein; roc 78.2 5.7 0.00019 35.5 7.4 86 44-151 98-188 (535)
128 2j1l_A RHO-related GTP-binding 78.1 9.9 0.00034 29.0 8.0 44 75-124 105-153 (214)
129 3c5c_A RAS-like protein 12; GD 77.9 7.2 0.00024 29.1 7.0 66 76-152 92-166 (187)
130 2elf_A Protein translation elo 77.8 3.6 0.00012 35.3 5.7 92 43-149 59-153 (370)
131 3b1v_A Ferrous iron uptake tra 77.8 3.9 0.00013 33.4 5.7 97 44-161 49-155 (272)
132 2ffh_A Protein (FFH); SRP54, s 77.7 5.1 0.00017 35.1 6.8 72 42-123 179-251 (425)
133 4djt_A GTP-binding nuclear pro 77.4 4.7 0.00016 30.7 5.9 99 44-161 61-166 (218)
134 2xex_A Elongation factor G; GT 77.3 3.3 0.00011 38.6 5.7 64 44-124 75-142 (693)
135 3bfv_A CAPA1, CAPB2, membrane 77.1 6.7 0.00023 31.9 7.0 62 43-121 191-256 (271)
136 2xxa_A Signal recognition part 77.0 4.6 0.00016 35.5 6.3 70 42-124 182-255 (433)
137 3cnl_A YLQF, putative uncharac 76.8 1.2 4E-05 36.4 2.2 54 75-141 21-74 (262)
138 1dar_A EF-G, elongation factor 76.4 4.2 0.00014 37.9 6.2 78 43-141 76-156 (691)
139 2atx_A Small GTP binding prote 76.3 20 0.00067 26.5 9.1 65 46-124 68-137 (194)
140 2cxx_A Probable GTP-binding pr 76.1 12 0.0004 27.5 7.7 79 45-124 45-137 (190)
141 1pui_A ENGB, probable GTP-bind 76.1 3.4 0.00012 31.4 4.7 71 75-150 108-178 (210)
142 2rdo_7 EF-G, elongation factor 75.4 6 0.0002 37.0 6.9 66 43-125 81-150 (704)
143 2hjg_A GTP-binding protein ENG 74.9 4 0.00014 35.5 5.4 49 111-161 288-340 (436)
144 2h5e_A Peptide chain release f 74.5 7.4 0.00025 35.0 7.1 66 43-125 81-150 (529)
145 3lxw_A GTPase IMAP family memb 74.2 6.2 0.00021 31.4 6.0 75 44-124 70-154 (247)
146 2x2e_A Dynamin-1; nitration, h 74.0 3.2 0.00011 35.1 4.3 73 43-125 129-213 (353)
147 2x77_A ADP-ribosylation factor 73.8 6.6 0.00023 29.1 5.8 76 44-138 66-148 (189)
148 2dyk_A GTP-binding protein; GT 73.3 3.4 0.00011 29.6 3.8 70 45-124 50-123 (161)
149 3ec1_A YQEH GTPase; atnos1, at 72.8 2.9 9.9E-05 35.8 3.8 41 77-125 73-114 (369)
150 2aka_B Dynamin-1; fusion prote 72.4 3.7 0.00013 33.2 4.3 72 43-125 124-208 (299)
151 1zu4_A FTSY; GTPase, signal re 72.1 20 0.00069 29.8 8.9 95 42-153 190-290 (320)
152 2iwr_A Centaurin gamma 1; ANK 72.0 20 0.00069 25.9 8.1 78 76-161 73-160 (178)
153 1jwy_B Dynamin A GTPase domain 72.0 2.4 8.1E-05 34.8 3.0 73 43-125 130-214 (315)
154 1puj_A YLQF, conserved hypothe 72.0 2.9 9.8E-05 34.4 3.5 61 74-149 22-84 (282)
155 3cio_A ETK, tyrosine-protein k 71.7 13 0.00045 30.5 7.5 62 43-121 213-278 (299)
156 1h65_A Chloroplast outer envel 71.3 11 0.00036 30.3 6.8 69 45-125 88-170 (270)
157 2qu8_A Putative nucleolar GTP- 71.1 5.5 0.00019 30.8 4.9 79 77-161 110-196 (228)
158 2gco_A H9, RHO-related GTP-bin 71.1 18 0.00063 27.0 7.8 43 76-124 97-144 (201)
159 2fv8_A H6, RHO-related GTP-bin 71.0 17 0.00059 27.3 7.7 66 45-124 74-144 (207)
160 3lvq_E ARF-GAP with SH3 domain 70.5 11 0.00039 33.0 7.3 89 44-151 366-464 (497)
161 3h2y_A GTPase family protein; 69.8 5 0.00017 34.3 4.7 41 77-125 71-112 (368)
162 3la6_A Tyrosine-protein kinase 69.5 20 0.00067 29.3 8.1 63 43-122 201-267 (286)
163 3tr5_A RF-3, peptide chain rel 68.4 13 0.00044 33.5 7.2 66 44-125 82-150 (528)
164 1fzq_A ADP-ribosylation factor 68.3 22 0.00077 26.1 7.7 67 44-125 60-133 (181)
165 3llu_A RAS-related GTP-binding 68.3 12 0.00043 27.9 6.3 43 76-124 96-144 (196)
166 1m7b_A RND3/RHOE small GTP-bin 68.1 23 0.00078 25.9 7.7 65 45-123 56-125 (184)
167 2ph1_A Nucleotide-binding prot 68.1 28 0.00095 27.5 8.6 75 31-121 114-194 (262)
168 1wcv_1 SOJ, segregation protei 67.9 42 0.0014 26.3 9.9 47 32-89 101-147 (257)
169 1gwn_A RHO-related GTP-binding 67.8 21 0.00073 27.0 7.6 42 76-123 100-146 (205)
170 2q3h_A RAS homolog gene family 67.7 21 0.00071 26.5 7.4 64 47-124 71-139 (201)
171 3c5h_A Glucocorticoid receptor 67.4 17 0.00058 28.8 7.2 67 75-151 162-235 (255)
172 4gzl_A RAS-related C3 botulinu 66.8 8 0.00027 29.3 4.9 65 46-124 80-149 (204)
173 3cb4_D GTP-binding protein LEP 66.3 19 0.00065 32.9 8.0 65 45-125 72-139 (599)
174 3zvr_A Dynamin-1; hydrolase, D 65.8 4.4 0.00015 38.4 3.7 74 43-126 149-234 (772)
175 3t34_A Dynamin-related protein 65.6 11 0.00038 31.6 6.0 69 43-125 135-219 (360)
176 3q3j_B RHO-related GTP-binding 65.2 23 0.00078 27.0 7.3 42 76-123 99-145 (214)
177 3r7w_A Gtpase1, GTP-binding pr 64.8 8.3 0.00028 31.8 4.9 73 76-154 81-165 (307)
178 1xzp_A Probable tRNA modificat 64.4 4.8 0.00016 35.9 3.5 72 45-124 292-365 (482)
179 1g3q_A MIND ATPase, cell divis 63.9 46 0.0016 25.4 9.1 65 42-124 110-178 (237)
180 3e70_C DPA, signal recognition 63.6 30 0.001 28.9 8.2 94 42-153 210-304 (328)
181 2wjg_A FEOB, ferrous iron tran 63.4 7.2 0.00024 28.7 3.9 64 45-124 55-127 (188)
182 1mky_A Probable GTP-binding pr 62.3 8.8 0.0003 33.3 4.8 51 110-162 293-347 (439)
183 1mh1_A RAC1; GTP-binding, GTPa 62.0 19 0.00066 26.0 6.2 65 46-124 55-124 (186)
184 1hyq_A MIND, cell division inh 61.3 46 0.0016 26.0 8.7 64 42-123 109-176 (263)
185 1r5b_A Eukaryotic peptide chai 58.9 12 0.0004 33.0 5.0 96 45-151 122-232 (467)
186 2j69_A Bacterial dynamin-like 58.6 4 0.00014 38.1 2.0 69 44-124 174-245 (695)
187 2j0v_A RAC-like GTP-binding pr 58.6 17 0.00058 27.4 5.4 79 76-161 81-171 (212)
188 3bwd_D RAC-like GTP-binding pr 58.5 17 0.00057 26.3 5.2 43 76-124 80-127 (182)
189 2wji_A Ferrous iron transport 58.1 7.9 0.00027 28.1 3.3 40 75-124 81-123 (165)
190 4dkx_A RAS-related protein RAB 58.1 62 0.0021 24.9 9.0 76 76-162 86-168 (216)
191 3mca_A HBS1, elongation factor 57.2 3.2 0.00011 38.0 1.1 13 75-87 278-290 (592)
192 1vma_A Cell division protein F 56.7 82 0.0028 25.9 10.5 108 42-168 185-296 (306)
193 3gj0_A GTP-binding nuclear pro 56.5 17 0.00056 27.7 5.0 44 75-125 87-135 (221)
194 3qq5_A Small GTP-binding prote 56.2 2.4 8.1E-05 37.2 0.0 71 45-126 84-157 (423)
195 2ywe_A GTP-binding protein LEP 54.8 24 0.00081 32.3 6.4 66 45-125 74-141 (600)
196 3kjh_A CO dehydrogenase/acetyl 54.5 32 0.0011 26.4 6.5 74 30-120 120-194 (254)
197 2e87_A Hypothetical protein PH 54.5 19 0.00066 30.2 5.5 74 76-161 247-327 (357)
198 3end_A Light-independent proto 54.4 32 0.0011 27.8 6.7 64 41-121 154-225 (307)
199 2g3y_A GTP-binding protein GEM 53.7 54 0.0019 25.1 7.7 45 113-161 149-194 (211)
200 3def_A T7I23.11 protein; chlor 53.0 8.3 0.00029 30.8 2.8 69 45-125 85-167 (262)
201 3q9l_A Septum site-determining 52.6 56 0.0019 25.2 7.8 47 30-88 102-148 (260)
202 2gj8_A MNME, tRNA modification 52.6 3.7 0.00013 30.4 0.6 14 75-88 83-96 (172)
203 2px0_A Flagellar biosynthesis 52.3 27 0.00092 28.7 5.9 85 42-142 181-266 (296)
204 3vqt_A RF-3, peptide chain rel 51.2 16 0.00054 33.0 4.6 64 45-125 101-168 (548)
205 4fn5_A EF-G 1, elongation fact 50.9 22 0.00075 33.1 5.7 61 48-125 89-153 (709)
206 1wxq_A GTP-binding protein; st 50.1 52 0.0018 28.2 7.6 42 45-87 72-113 (397)
207 3l0i_B RAS-related protein RAB 48.0 12 0.00042 28.0 2.9 67 44-125 82-154 (199)
208 3avx_A Elongation factor TS, e 47.5 21 0.00072 35.7 5.1 94 44-151 359-458 (1289)
209 2rcn_A Probable GTPase ENGC; Y 47.3 13 0.00046 31.7 3.4 13 113-125 164-176 (358)
210 1ls1_A Signal recognition part 47.2 1.1E+02 0.0039 24.7 10.2 94 42-153 179-273 (295)
211 3k9g_A PF-32 protein; ssgcid, 46.8 1E+02 0.0035 24.0 9.6 75 42-140 143-222 (267)
212 3j25_A Tetracycline resistance 46.4 11 0.00036 34.8 2.7 64 45-125 68-135 (638)
213 3r7w_B Gtpase2, GTP-binding pr 45.1 34 0.0012 28.8 5.5 44 76-125 73-122 (331)
214 1np6_A Molybdopterin-guanine d 44.7 4.1 0.00014 31.0 -0.3 63 19-83 62-141 (174)
215 3ea0_A ATPase, para family; al 43.4 1.1E+02 0.0036 23.3 10.8 64 43-124 118-187 (245)
216 2wkq_A NPH1-1, RAS-related C3 43.1 49 0.0017 26.6 6.1 44 75-124 226-274 (332)
217 1udx_A The GTP-binding protein 40.9 22 0.00075 30.9 3.7 76 75-161 235-316 (416)
218 1n0u_A EF-2, elongation factor 35.7 19 0.00064 34.3 2.7 65 43-123 97-164 (842)
219 3cwq_A Para family chromosome 34.8 1.4E+02 0.005 22.4 8.0 78 42-142 66-149 (209)
220 2zej_A Dardarin, leucine-rich 33.1 47 0.0016 24.3 4.1 41 78-124 82-127 (184)
221 3t5d_A Septin-7; GTP-binding p 32.8 22 0.00074 28.5 2.3 43 75-125 115-160 (274)
222 2oze_A ORF delta'; para, walke 31.2 1.6E+02 0.0053 23.3 7.3 37 42-88 153-189 (298)
223 2fcj_A Small toprim domain pro 29.9 1.5E+02 0.0051 21.0 6.2 81 44-142 25-105 (119)
224 1byi_A Dethiobiotin synthase; 29.2 41 0.0014 25.5 3.3 23 30-55 98-120 (224)
225 1mky_A Probable GTP-binding pr 29.1 33 0.0011 29.6 3.0 40 76-123 82-124 (439)
226 1zo1_I IF2, translation initia 27.5 35 0.0012 30.4 2.9 64 45-124 52-118 (501)
227 2f9l_A RAB11B, member RAS onco 27.1 1.8E+02 0.0062 21.1 7.7 64 77-151 79-148 (199)
228 2hjg_A GTP-binding protein ENG 26.9 22 0.00077 30.7 1.5 72 44-124 51-126 (436)
229 2cjw_A GTP-binding protein GEM 26.7 1.9E+02 0.0064 21.1 7.8 46 113-162 118-164 (192)
230 1g7s_A Translation initiation 25.4 68 0.0023 29.2 4.4 63 45-123 71-136 (594)
231 3goc_A Endonuclease V; alpha-b 25.3 42 0.0014 27.0 2.6 18 41-58 105-122 (237)
232 3ga2_A Endonuclease V; alpha-b 25.2 43 0.0015 27.1 2.7 18 42-59 108-125 (246)
233 4dcu_A GTP-binding protein ENG 25.1 24 0.00081 30.7 1.3 69 44-124 71-146 (456)
234 2dy1_A Elongation factor G; tr 25.1 95 0.0033 28.5 5.4 61 45-122 75-139 (665)
235 1zcb_A G alpha I/13; GTP-bindi 24.1 34 0.0012 29.0 2.0 15 75-89 224-238 (362)
236 1cip_A Protein (guanine nucleo 22.6 39 0.0013 28.5 2.2 15 75-89 216-230 (353)
237 2qag_A Septin-2, protein NEDD5 22.1 51 0.0017 27.7 2.7 13 113-125 178-190 (361)
238 1oix_A RAS-related protein RAB 21.4 2.4E+02 0.0081 20.4 7.3 34 113-150 138-171 (191)
239 2l69_A Rossmann 2X3 fold prote 20.7 1.9E+02 0.0066 19.7 4.9 93 25-142 9-101 (134)
240 3izy_P Translation initiation 20.3 40 0.0014 30.4 1.8 42 75-124 75-119 (537)
No 1
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.97 E-value=7.6e-30 Score=220.08 Aligned_cols=197 Identities=24% Similarity=0.418 Sum_probs=158.3
Q ss_pred ccc----CCCceee----eeeeecCCCcEEeecchhHHHHHHHHH---HhcC-CCCEEEEecCCCCCcHHHHHHhhcCcc
Q 027979 2 INE----GEGGALV----EEWVELANGCICCTVKHSLVQALEQLV---QRKE-RLDHILLETTGLANPAPLASVLWLDDQ 69 (216)
Q Consensus 2 ~ne----g~dg~~~----~~v~eL~~GCiCCsl~~dl~~~L~~l~---~~~~-~~d~IiIE~sG~a~P~~i~~~l~~~~~ 69 (216)
+|| ++||..+ ++++||+||||||+.+.++..+|..++ +... .++++++|++|+++|.+++..++.++.
T Consensus 37 ~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~ 116 (318)
T 1nij_A 37 ENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEV 116 (318)
T ss_dssp CSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHH
T ss_pred EecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCcc
Confidence 567 5667665 478999999999999999999998885 3221 359999999999999999887744566
Q ss_pred cccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEE
Q 027979 70 LESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 149 (216)
Q Consensus 70 l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~ 149 (216)
.....+++.++++||+.++..++.+ .+...+|+.+||++++||+|++++. +++.+.++++||++.|+.
T Consensus 117 ~~~~~~l~~~l~~vd~~~~~~~~~~------ls~g~~Q~~~ad~ill~k~dl~de~------~~l~~~l~~l~~~~~ii~ 184 (318)
T 1nij_A 117 LCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQVGYADRILLTKTDVAGEA------EKLHERLARINARAPVYT 184 (318)
T ss_dssp HHHHEEEEEEEEEEETTTHHHHHHH------CHHHHHHHHTCSEEEEECTTTCSCT------HHHHHHHHHHCSSSCEEE
T ss_pred ccCeEEECCEEEEEEHHHHHHHHhh------chHHHHHHHhCCEEEEECcccCCHH------HHHHHHHHHhCCCCeEEE
Confidence 6778899999999999999887754 4566799999999999999999652 678899999999999999
Q ss_pred eecCCCChhhhhccCCCCccchhhhhhhhhhhccCCCCCCCCCCEEEEEEEcCCCCCHHHHHHhHc
Q 027979 150 SVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIA 215 (216)
Q Consensus 150 ~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~t~~~~~~~p~~~~~~~~~l~ 215 (216)
++++.++++.+++...|+...... ...++..++++|+++|++++++.++|+|+++|..||+
T Consensus 185 ~sh~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~l~~~l~ 245 (318)
T 1nij_A 185 VTHGDIDLGLLFNTNGFMLEENVV-----STKPRFHFIADKQNDISSIVVELDYPVDISEVSRVME 245 (318)
T ss_dssp CCSSCCCGGGGSCCCTTSCCSCCC-----SSCCCSCSTGGGGCSEEEEEEEESSCBCHHHHHHHHH
T ss_pred ecccCCCHHHHhCCCCCChhhhhc-----ccCcccccccCCCCCeEEEEEEeCCCCCHHHHHHHHH
Confidence 999999999999987765433210 0001111233456889999999999999999999985
No 2
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.63 E-value=2.8e-08 Score=79.60 Aligned_cols=112 Identities=20% Similarity=0.274 Sum_probs=76.0
Q ss_pred eeecCCCcEEeecchhHHHHHHHHHHhcCCCCEEEEecCCC-CCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHH
Q 027979 14 WVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQI 92 (216)
Q Consensus 14 v~eL~~GCiCCsl~~dl~~~L~~l~~~~~~~d~IiIE~sG~-a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l 92 (216)
++.+.+||+||.....+...+. ....+|+++|||+|. ..|... + +.-+.+|+|+|+.......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~iiidt~G~~~~~~~~------~------~~~~~~i~vvd~~~~~~~~ 146 (221)
T 2wsm_A 83 AEAISTGKECHLDAHMIYHRLK----KFSDCDLLLIENVGNLICPVDF------D------LGENYRVVMVSVTEGDDVV 146 (221)
T ss_dssp EEECCCTTCSSCCHHHHHTTGG----GGTTCSEEEEEEEEBSSGGGGC------C------CSCSEEEEEEEGGGCTTHH
T ss_pred EEEecCCceeecccHHHHHHHH----hcCCCCEEEEeCCCCCCCCchh------c------cccCcEEEEEeCCCcchhh
Confidence 4778999998754444444343 235799999999995 444311 1 1224579999998764322
Q ss_pred hhcccCCChhHHHHHHhhccEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec
Q 027979 93 DKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR 152 (216)
Q Consensus 93 ~~~~~~~~~~~~~~QI~~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~ 152 (216)
.. ...++..+.+|++||+|+.+..+ ...+++.+.++.++|.++++.++.
T Consensus 147 ~~---------~~~~~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~i~~~Sa 195 (221)
T 2wsm_A 147 EK---------HPEIFRVADLIVINKVALAEAVG--ADVEKMKADAKLINPRAKIIEMDL 195 (221)
T ss_dssp HH---------CHHHHHTCSEEEEECGGGHHHHT--CCHHHHHHHHHHHCTTSEEEECBT
T ss_pred hh---------hhhhhhcCCEEEEecccCCcchh--hHHHHHHHHHHHhCCCCeEEEeec
Confidence 21 13567889999999999975311 136788888998999999987654
No 3
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.17 E-value=9e-07 Score=70.90 Aligned_cols=124 Identities=26% Similarity=0.347 Sum_probs=77.8
Q ss_pred eeeecCCCcEEeecchhHHHHHHHHHHhcCCCCEEEEecCCC-CCcHHHHHHhhcCcccccceeeccEEEEEcccchHHH
Q 027979 13 EWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ 91 (216)
Q Consensus 13 ~v~eL~~GCiCCsl~~dl~~~L~~l~~~~~~~d~IiIE~sG~-a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~ 91 (216)
.++.+.+||+||-...++.+.+..+. ..++|++++|++|. ..|.. + + ... .-++.|+|+......
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~l~--~~~~d~~~id~~g~i~~~~s----~--~--~~~----~~~~~v~~~~~~~~~ 155 (226)
T 2hf9_A 90 KVVPLNTGKECHLDAHLVGHALEDLN--LDEIDLLFIENVGNLICPAD----F--D--LGT----HKRIVVISTTEGDDT 155 (226)
T ss_dssp EEEEEECTTCSSCCHHHHHHHHTTSC--GGGCSEEEEECCSCSSGGGG----C--C--CSC----SEEEEEEEGGGCTTT
T ss_pred cEEEecCCceEeccHHHHHHHHHHHh--cCCCCEEEEeCCCCccCcch----h--h--hcc----CcEEEEEecCcchhh
Confidence 45678889998765556655555442 34689999999995 33221 1 1 111 224788887543221
Q ss_pred HhhcccCCChhHHHHHHhhccEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeecC-CCChhhhh
Q 027979 92 IDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC-QVDLSEVL 161 (216)
Q Consensus 92 l~~~~~~~~~~~~~~QI~~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~~-~v~~~~l~ 161 (216)
.. ....|+..+++|++||+|+.+..+ ...+++.+.++.++|.++++.++.. ......++
T Consensus 156 ~~---------~~~~~~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 215 (226)
T 2hf9_A 156 IE---------KHPGIMKTADLIVINKIDLADAVG--ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVL 215 (226)
T ss_dssp TT---------TCHHHHTTCSEEEEECGGGHHHHT--CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHH
T ss_pred Hh---------hhhhHhhcCCEEEEeccccCchhH--HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHH
Confidence 11 123678899999999999976421 1367788888888999999876532 23344443
No 4
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.01 E-value=4.1e-06 Score=72.56 Aligned_cols=126 Identities=18% Similarity=0.160 Sum_probs=75.5
Q ss_pred eeecCCCcEEeecchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHh
Q 027979 14 WVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID 93 (216)
Q Consensus 14 v~eL~~GCiCCsl~~dl~~~L~~l~~~~~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~ 93 (216)
+..+.++|.||.+.....+++. .+. ...++++||+|.|+..+...+. -..+.++.|+|+...... .
T Consensus 144 i~~~~~~~~~~~~~~~t~d~i~-~~~-~~~~~~iiiDTpGi~~~~~~~~-----------~~aD~vl~V~d~~~~~~~-~ 209 (355)
T 3p32_A 144 IRPSPTSGTLGGVTRATRETVV-LLE-AAGFDVILIETVGVGQSEVAVA-----------NMVDTFVLLTLARTGDQL-Q 209 (355)
T ss_dssp EECCC--CCHHHHHHHHHHHHH-HHH-HTTCCEEEEEECSCSSHHHHHH-----------TTCSEEEEEEESSTTCTT-T
T ss_pred EEECCCCccccchhHHHHHHHH-HHh-hCCCCEEEEeCCCCCcHHHHHH-----------HhCCEEEEEECCCCCccH-H
Confidence 4677899999988887778884 444 3579999999999986543221 124568999998754321 1
Q ss_pred hcccCCChhHHHHHHhhccEEEEccCCCCCCCCccchHHHHHHHHHhhCC-----CCEEEEeec-CCCChhhhh
Q 027979 94 KYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINS-----LAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 94 ~~~~~~~~~~~~~QI~~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP-----~A~iv~~~~-~~v~~~~l~ 161 (216)
. .. ....+.+++||+||+|+.+........+++.+.++.++| ..+++.++- ..-.++.++
T Consensus 210 ~------l~--~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~ 275 (355)
T 3p32_A 210 G------IK--KGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELW 275 (355)
T ss_dssp T------CC--TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHH
T ss_pred H------HH--HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHH
Confidence 1 10 122456999999999997643111122345555555554 456776543 223444444
No 5
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.96 E-value=1.3e-05 Score=69.42 Aligned_cols=114 Identities=17% Similarity=0.084 Sum_probs=57.9
Q ss_pred ecCCCcEEeecchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhc
Q 027979 16 ELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY 95 (216)
Q Consensus 16 eL~~GCiCCsl~~dl~~~L~~l~~~~~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~ 95 (216)
...++|.||+...+..+.+..+ . ...++++||||.|+..+..-+ . . ..+.++.|+|+..... ...
T Consensus 141 ~~~~~~~lgg~tr~~~~~~~~~-~-~~~~~~iliDT~Gi~~~~~~l---~------~--~~d~vl~V~d~~~~~~-~~~- 205 (349)
T 2www_A 141 PSPTRGTLGGVTRTTNEAILLC-E-GAGYDIILIETVGVGQSEFAV---A------D--MVDMFVLLLPPAGGDE-LQG- 205 (349)
T ss_dssp CC---------CTTHHHHHHHH-H-HTTCSEEEEECCCC--CHHHH---H------T--TCSEEEEEECCC---------
T ss_pred ecCCccccccchHHHHHHHHhh-c-cCCCCEEEEECCCcchhhhhH---H------h--hCCEEEEEEcCCcchh-HHH-
Confidence 4677999997777788887654 2 356899999999998664221 1 1 3466899999975421 110
Q ss_pred ccCCChhHHHHHHhhccEEEEccCCCCCCCCccchHHHHHHHHHhhCC-----CCEEEEee
Q 027979 96 RHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINS-----LAHVIRSV 151 (216)
Q Consensus 96 ~~~~~~~~~~~QI~~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP-----~A~iv~~~ 151 (216)
.. ...++.++++++||+|+.+.........++...++.++| ..+++.++
T Consensus 206 -----i~--~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iS 259 (349)
T 2www_A 206 -----IK--RGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRIS 259 (349)
T ss_dssp ------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECC
T ss_pred -----hH--HHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEe
Confidence 00 122356899999999997532100012344444555565 34666543
No 6
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.88 E-value=3.3e-05 Score=66.47 Aligned_cols=113 Identities=14% Similarity=0.114 Sum_probs=65.2
Q ss_pred cCCCcEEeecchh--------HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccch
Q 027979 17 LANGCICCTVKHS--------LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL 88 (216)
Q Consensus 17 L~~GCiCCsl~~d--------l~~~L~~l~~~~~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~ 88 (216)
..+||+||...++ +.+.+..+ . ...++++||+|.|+.++...+. -..|.++.|+|+...
T Consensus 116 ~~~~~i~~~~~~~~l~g~~~~~~~~~~~~-~-~~~~~i~liDTpG~~~~~~~~~-----------~~aD~vl~Vvd~~~~ 182 (341)
T 2p67_A 116 AEAAFIRPVPSSGHLGGASQRARELMLLC-E-AAGYDVVIVETVGVGQSETEVA-----------RMVDCFISLQIAGGG 182 (341)
T ss_dssp CTTEEEEEECC-----CHHHHHHHHHHHH-H-HTTCSEEEEEEECCTTHHHHHH-----------TTCSEEEEEECC---
T ss_pred CCCceeecCccccccchhHHHHHHHHHHh-h-ccCCCEEEEeCCCccchHHHHH-----------HhCCEEEEEEeCCcc
Confidence 4689999976432 22333322 1 3468999999999998765432 135678999999754
Q ss_pred HHHHhhcccCCChhHHHHHHhhccEEEEccCCCCCCCCccchHHHHHHHHHhhCC-----CCEEEEee
Q 027979 89 LFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINS-----LAHVIRSV 151 (216)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~QI~~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP-----~A~iv~~~ 151 (216)
.. +.. .. ..+.....++|+||+|+.+.......++++++.++.+++ ..+++.++
T Consensus 183 ~~-~~~------l~--~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iS 241 (341)
T 2p67_A 183 DD-LQG------IK--KGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCS 241 (341)
T ss_dssp ----CC------CC--HHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECB
T ss_pred HH-HHH------HH--HhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEee
Confidence 32 111 11 145577899999999998642100112244554545565 45677654
No 7
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.81 E-value=3e-05 Score=71.09 Aligned_cols=109 Identities=22% Similarity=0.234 Sum_probs=61.5
Q ss_pred CCCcEEeecchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHH--HHHHhh-cCcccccceeeccEEEEEcccch--HHHH
Q 027979 18 ANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAP--LASVLW-LDDQLESAVRLDSIITVVDAKNL--LFQI 92 (216)
Q Consensus 18 ~~GCiCCsl~~dl~~~L~~l~~~~~~~d~IiIE~sG~a~P~~--i~~~l~-~~~~l~~~~~l~~vI~vVDa~~~--~~~l 92 (216)
.+||+||++..++.. ..+||.|.|+.++.. +.+.+. ........-..+.++.|+|+.+. ....
T Consensus 140 ~~~~~~~~~~~~ll~------------~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~ 207 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLE------------SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF 207 (550)
T ss_dssp CTTEEEEECCCHHHH------------HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH
T ss_pred cccceEEeccccccC------------CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH
Confidence 389999999987642 248999999987532 111000 00000011246789999999763 1111
Q ss_pred hhcccCCChhHHHHHH---hhccEEEEccCCCCCCCCccchHHHHHHHHH-------hhCCCCEEEEee
Q 027979 93 DKYRHLSSYPEAIHQI---AFADVVILNKVDLVSPERSGDSLDELEKEIH-------EINSLAHVIRSV 151 (216)
Q Consensus 93 ~~~~~~~~~~~~~~QI---~~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~-------~lNP~A~iv~~~ 151 (216)
..+.+++ ...-++|+||+|+++.+ ++.++.+.++ .++...+++...
T Consensus 208 ---------~~~l~~l~~~~~pvilVlNK~Dl~~~~----el~~~~~~l~~s~~~i~~vs~l~~~~~~~ 263 (550)
T 2qpt_A 208 ---------SEAIGALRGHEDKIRVVLNKADMVETQ----QLMRVYGALMWALGKVVGTPEVLRVYIGS 263 (550)
T ss_dssp ---------HHHHHHTTTCGGGEEEEEECGGGSCHH----HHHHHHHHHHHHHHHHHCCSSCCCEEESC
T ss_pred ---------HHHHHHHHhcCCCEEEEEECCCccCHH----HHHHHHHHhhcchhheeechHhhhhcccc
Confidence 1222333 45569999999999864 3455555543 344555554433
No 8
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.55 E-value=3.2e-05 Score=63.15 Aligned_cols=101 Identities=20% Similarity=0.151 Sum_probs=54.4
Q ss_pred CCCcEEeecc--hhHHHHHHHHHHh-cCCCCEEEEecCCCCCcHHHHH---HhhcCcccccceeeccEEEEEcccchHHH
Q 027979 18 ANGCICCTVK--HSLVQALEQLVQR-KERLDHILLETTGLANPAPLAS---VLWLDDQLESAVRLDSIITVVDAKNLLFQ 91 (216)
Q Consensus 18 ~~GCiCCsl~--~dl~~~L~~l~~~-~~~~d~IiIE~sG~a~P~~i~~---~l~~~~~l~~~~~l~~vI~vVDa~~~~~~ 91 (216)
.|||+||+.. .+....|.+.+.. ...+|++||+|+|..++..+.. .+. ..+ -. +.+|+++|+......
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~--~~~---~~-~~iv~vvD~~~~~~~ 153 (262)
T 1yrb_A 80 PNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLM--ENL---PY-PLVVYISDPEILKKP 153 (262)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHH--HTS---SS-CEEEEEECGGGCCSH
T ss_pred CCCcEEecHHHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHH--HHH---hh-ceEEeccchhhhcCH
Confidence 5788887631 1122233332221 1248999999999987754421 111 111 23 678999998754322
Q ss_pred HhhcccCCChhHHHHHHhhccEEEEccCCCCCC
Q 027979 92 IDKYRHLSSYPEAIHQIAFADVVILNKVDLVSP 124 (216)
Q Consensus 92 l~~~~~~~~~~~~~~QI~~AD~IvlnK~D~v~~ 124 (216)
..-............+.....++|+||+|+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 154 NDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred HHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 211000000001124566788999999999875
No 9
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.44 E-value=0.00034 Score=60.11 Aligned_cols=108 Identities=18% Similarity=0.188 Sum_probs=61.5
Q ss_pred EeecchhHHHHHHHH--HHhcCCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCC
Q 027979 23 CCTVKHSLVQALEQL--VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 100 (216)
Q Consensus 23 CCsl~~dl~~~L~~l--~~~~~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~ 100 (216)
||++++....++..+ +. ...++++||||.|+.++...+.. ..+-++.|+|+..... +..
T Consensus 126 ~~~l~G~tr~~~e~~~~~~-~~~~~~iliDT~Gi~~~~~~v~~-----------~~d~vl~v~d~~~~~~-~~~------ 186 (337)
T 2qm8_A 126 SGTLGGVAAKTRETMLLCE-AAGFDVILVETVGVGQSETAVAD-----------LTDFFLVLMLPGAGDE-LQG------ 186 (337)
T ss_dssp CSSHHHHHHHHHHHHHHHH-HTTCCEEEEEECSSSSCHHHHHT-----------TSSEEEEEECSCC-------------
T ss_pred cccccchHHHHHHHHHHHh-cCCCCEEEEECCCCCcchhhHHh-----------hCCEEEEEEcCCCccc-HHH------
Confidence 577776555555443 33 35789999999999988543221 2355788899864321 111
Q ss_pred hhHHHHHHhhccEEEEccCCCCCCCC-ccchHHHHHHHHHhhCC-----CCEEEEee
Q 027979 101 YPEAIHQIAFADVVILNKVDLVSPER-SGDSLDELEKEIHEINS-----LAHVIRSV 151 (216)
Q Consensus 101 ~~~~~~QI~~AD~IvlnK~D~v~~~~-~~~~l~~i~~~l~~lNP-----~A~iv~~~ 151 (216)
.. ....+.++++++||+|+..... .....+++...+.-++| ..+++.++
T Consensus 187 i~--~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~S 241 (337)
T 2qm8_A 187 IK--KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTIS 241 (337)
T ss_dssp CC--TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEB
T ss_pred HH--HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEe
Confidence 10 0224678999999999865321 00113444444444564 35666544
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.68 E-value=0.0021 Score=50.66 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=55.8
Q ss_pred CCEEEEecCCCCCc------HHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---ccEE
Q 027979 44 LDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---ADVV 114 (216)
Q Consensus 44 ~d~IiIE~sG~a~P------~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD~I 114 (216)
....|+.|.|..++ ..-...+. ...+...-..+.++.|+|+........ ..+..++.. --++
T Consensus 79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~vi~v~d~~~~~~~~~--------~~~~~~l~~~~~p~i~ 149 (223)
T 4dhe_A 79 PVAHLVDLPGYGYAEVPGAAKAHWEQLL-SSYLQTRPQLCGMILMMDARRPLTELD--------RRMIEWFAPTGKPIHS 149 (223)
T ss_dssp CSEEEEECCCCCSSCCCSTHHHHHHHHH-HHHHHHCTTEEEEEEEEETTSCCCHHH--------HHHHHHHGGGCCCEEE
T ss_pred CcEEEEcCCCCCcccCChhhHHHHHHHH-HHHHhcCcCcCEEEEEEeCCCCCCHHH--------HHHHHHHHhcCCCEEE
Confidence 57889999998776 21111111 111222223567999999975321111 122334433 3478
Q ss_pred EEccCCCCCCCCccchHHHHHHHHHhh-----CCCCEEEEee
Q 027979 115 ILNKVDLVSPERSGDSLDELEKEIHEI-----NSLAHVIRSV 151 (216)
Q Consensus 115 vlnK~D~v~~~~~~~~l~~i~~~l~~l-----NP~A~iv~~~ 151 (216)
|+||+|+.+..+.....+++++.+... .+..+++.++
T Consensus 150 v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~S 191 (223)
T 4dhe_A 150 LLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFS 191 (223)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEB
T ss_pred EEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEee
Confidence 899999988642111244555566655 5677888754
No 11
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.15 E-value=0.0082 Score=45.96 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=51.5
Q ss_pred CEEEEecCCCCCc------HHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEcc
Q 027979 45 DHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P------~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~IvlnK 118 (216)
...++.+.|+.++ ..-...+. ...+...-.++.++.|+|+.+........ .-....+....-++|+||
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~p~i~v~nK 143 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMI-ETYITTREELKAVVQIVDLRHAPSNDDVQ-----MYEFLKYYGIPVIVIATK 143 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHH-HHHHHHCTTEEEEEEEEETTSCCCHHHHH-----HHHHHHHTTCCEEEEEEC
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHH-HHHHhhhhcCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEEEC
Confidence 5688999998776 22222221 11122222457899999987632211100 001112223445889999
Q ss_pred CCCCCCCCccchHHHHHHHHHh-h--CCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHE-I--NSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~-l--NP~A~iv~~~ 151 (216)
+|+.++.+ .....+.+++ + ++..++++++
T Consensus 144 ~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S 175 (195)
T 1svi_A 144 ADKIPKGK----WDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp GGGSCGGG----HHHHHHHHHHHHTCCTTSEEEECC
T ss_pred cccCChHH----HHHHHHHHHHHHcccCCCceEEEE
Confidence 99988653 3333333333 3 4466777654
No 12
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.13 E-value=0.01 Score=49.96 Aligned_cols=95 Identities=18% Similarity=0.162 Sum_probs=55.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc-----cEEEEcc
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-----DVVILNK 118 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A-----D~IvlnK 118 (216)
...+++.|.|..+|...+............-..+.++.|+|+.+...... ..+.+++... -++++||
T Consensus 55 ~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--------~~i~~~l~~~~~~~p~ilV~NK 126 (301)
T 1wf3_A 55 RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--------ELVARALKPLVGKVPILLVGNK 126 (301)
T ss_dssp EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--------HHHHHHHGGGTTTSCEEEEEEC
T ss_pred cEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--------HHHHHHHHhhcCCCCEEEEEEC
Confidence 45678999999988543322111111111224688999999975322111 1233555543 4788999
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR 152 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~ 152 (216)
+|+.+.. . .+.+.++.+.+.+++++++-
T Consensus 127 ~Dl~~~~----~--~~~~~~~~~~~~~~~~~iSA 154 (301)
T 1wf3_A 127 LDAAKYP----E--EAMKAYHELLPEAEPRMLSA 154 (301)
T ss_dssp GGGCSSH----H--HHHHHHHHTSTTSEEEECCT
T ss_pred cccCCch----H--HHHHHHHHhcCcCcEEEEeC
Confidence 9998753 1 14455555556677777553
No 13
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.86 E-value=0.016 Score=44.09 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=50.0
Q ss_pred CCEEEEecCCCCCc------HHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEc
Q 027979 44 LDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN 117 (216)
Q Consensus 44 ~d~IiIE~sG~a~P------~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~Ivln 117 (216)
....++.+.|+... ......+. ...+...-..+.++.|+|+.......... ...........-++|+|
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~i~v~n 141 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLV-EDYFKNRWSLQMVFLLVDGRIPPQDSDLM-----MVEWMKSLNIPFTIVLT 141 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHH-HHHHHHCTTEEEEEEEEETTSCCCHHHHH-----HHHHHHHTTCCEEEEEE
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHH-HHHHhcCcCceEEEEEecCCCCCCHHHHH-----HHHHHHHcCCCEEEEEE
Confidence 35688999997543 22222221 11222223457789999987532111100 11122333445688899
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhC---CCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEIN---SLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lN---P~A~iv~~~ 151 (216)
|+|+.++.+ .+...+.+++.. ..+++++++
T Consensus 142 K~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S 174 (195)
T 3pqc_A 142 KMDKVKMSE----RAKKLEEHRKVFSKYGEYTIIPTS 174 (195)
T ss_dssp CGGGSCGGG----HHHHHHHHHHHHHSSCCSCEEECC
T ss_pred ChhcCChHH----HHHHHHHHHHHHhhcCCCceEEEe
Confidence 999987653 333333333322 235666543
No 14
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.18 E-value=0.012 Score=49.56 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=58.7
Q ss_pred CCCEEEEecCCCCCcH--HHH-HHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh---hccEEEE
Q 027979 43 RLDHILLETTGLANPA--PLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVIL 116 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~--~i~-~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~---~AD~Ivl 116 (216)
....+++.|.|..+|. ... +.+. .......-..+.++.|+|+......-. ...+.+++. ..-++|+
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~-~~~~~~l~~aD~il~VvD~~~~~~~~~-------~~~~~~~l~~~~~pvilV~ 129 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMV-EIAKQSLEEADVILFMIDATEGWRPRD-------EEIYQNFIKPLNKPVIVVI 129 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHH-HHHHHHHHHCSEEEEEEETTTBSCHHH-------HHHHHHHTGGGCCCEEEEE
T ss_pred CCeEEEEECcCCCccccchhHHHHHH-HHHHHHhhcCCEEEEEEeCCCCCCchh-------HHHHHHHHHhcCCCEEEEE
Confidence 3467899999998876 111 1110 000011124678999999985421110 011133443 3458899
Q ss_pred ccCCCC-CCCCccchHHHHHHHHHhhC-CCCEEEEeecC-CCChhhhh
Q 027979 117 NKVDLV-SPERSGDSLDELEKEIHEIN-SLAHVIRSVRC-QVDLSEVL 161 (216)
Q Consensus 117 nK~D~v-~~~~~~~~l~~i~~~l~~lN-P~A~iv~~~~~-~v~~~~l~ 161 (216)
||+|+. +.+ .+....+.+++.. +.+++++++.- ....+.++
T Consensus 130 NK~Dl~~~~~----~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~ 173 (308)
T 3iev_A 130 NKIDKIGPAK----NVLPLIDEIHKKHPELTEIVPISALKGANLDELV 173 (308)
T ss_dssp ECGGGSSSGG----GGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHH
T ss_pred ECccCCCCHH----HHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHH
Confidence 999998 443 3455555555554 67788875432 23444444
No 15
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.36 E-value=0.35 Score=34.97 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=51.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-c------cEEEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-A------DVVIL 116 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-A------D~Ivl 116 (216)
+...+++++|......+..... -..+.++.|+|+...... .. ...+..++.. . =++++
T Consensus 51 ~~~~~~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~-~~------~~~~~~~i~~~~~~~~~p~iiv~ 115 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMRDQYM--------RTGEGFLCVFAINNTKSF-ED------IHQYREQIKRVKDSDDVPMVLVG 115 (166)
T ss_dssp EEEEEEECCCCSSCCHHHHHHH--------HHCSEEEEEEETTCHHHH-HH------HHHHHHHHHHHHTCSCCCEEEEE
T ss_pred EEEEEEECCCchhhhHHHHHhh--------ccCCEEEEEEECCCHHHH-HH------HHHHHHHHHHhcCCCCCcEEEEE
Confidence 3467899999887666655432 135678999998765422 11 1222333322 1 27889
Q ss_pred ccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 117 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
||+|+.+.+. ..+.+.+..+..+ .++++++
T Consensus 116 nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~S 145 (166)
T 2ce2_X 116 NKSDLAARTV---ESRQAQDLARSYG--IPYIETS 145 (166)
T ss_dssp ECTTCSCCCS---CHHHHHHHHHHHT--CCEEEEC
T ss_pred Echhhhhccc---CHHHHHHHHHHcC--CeEEEec
Confidence 9999987432 2455555555544 4566544
No 16
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.33 E-value=0.013 Score=45.43 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=33.0
Q ss_pred eeeecCCCcEEeecch-hH-HHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHH
Q 027979 13 EWVELANGCICCTVKH-SL-VQALEQLVQRKERLDHILLETTGLANPAPLASV 63 (216)
Q Consensus 13 ~v~eL~~GCiCCsl~~-dl-~~~L~~l~~~~~~~d~IiIE~sG~a~P~~i~~~ 63 (216)
.++..++||.||..+. ++ .+.+.+++.+. ++|+||||..|- +|.+.+..
T Consensus 65 ~v~~~s~~~~~~~~~~~~~~~~~~~~ll~~~-~~D~vlVEg~~~-~~~pki~~ 115 (169)
T 1xjc_A 65 ATAVEGDGLLQLHLRRPLWRLDDVLALYAPL-RLDLVLVEGYKQ-ERHPKVVL 115 (169)
T ss_dssp EEEEEETTEEEEEECCSCCCHHHHHHHHGGG-CCSEEEEECCTT-SCSCEEEE
T ss_pred eEEeccCCEEEEEecccccchHHHHHHHHhc-CCCEEEEeCCCC-CCCCEEEE
Confidence 4677899999997731 22 13344555544 799999999996 46655543
No 17
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.14 E-value=0.33 Score=35.30 Aligned_cols=89 Identities=16% Similarity=0.189 Sum_probs=50.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh-hc------cEEEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FA------DVVIL 116 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~-~A------D~Ivl 116 (216)
....++.+.|......+..... -..+.++.|+|+......- . ......++. .. =++|+
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~-~------~~~~~~~i~~~~~~~~~piilv~ 116 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYF--------RSGEGFLCVFSITEMESFA-A------TADFREQILRVKEDENVPFLLVG 116 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHH--------HHCSEEEEEEETTCHHHHH-H------HHHHHHHHHHHHCCTTSCEEEEE
T ss_pred EEEEEEECCCcchhHHHHHHHh--------hcCCEEEEEEECCCHHHHH-H------HHHHHHHHHHhcCCCCCcEEEEE
Confidence 3567889999877666655432 1356789999998754321 1 112222222 12 27889
Q ss_pred ccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 117 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
||+|+.+..+. ..+++++..+..+ +++++++
T Consensus 117 nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 147 (168)
T 1u8z_A 117 NKSDLEDKRQV--SVEEAKNRADQWN--VNYVETS 147 (168)
T ss_dssp ECGGGGGGCCS--CHHHHHHHHHHHT--CEEEECC
T ss_pred ECccccccCcc--CHHHHHHHHHHcC--CeEEEeC
Confidence 99999765432 3466666666654 4666644
No 18
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.12 E-value=0.19 Score=44.71 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=53.1
Q ss_pred CCCCEEEEecCCCCCc-HHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEccCC
Q 027979 42 ERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 120 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P-~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~IvlnK~D 120 (216)
..+|+|||+|.|.... ..+...+. .+......+.++.|+||..-.+.... ...+.+-...+.||+||.|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~---~i~~~~~pd~vlLVvDA~~gq~a~~~-------a~~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMK---QISNVIHPHEVILVIDGTIGQQAYNQ-------ALAFKEATPIGSIIVTKLD 250 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGGGGHHHH-------HHHHHHSCTTEEEEEECCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHH---HHHHhhcCceEEEEEeCCCchhHHHH-------HHHHHhhCCCeEEEEECCC
Confidence 4699999999997653 23333221 12233446779999999875432211 1112222345569999999
Q ss_pred CCCCCCccchHHHHHHHHHhhCCCCEEEEeecC
Q 027979 121 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRC 153 (216)
Q Consensus 121 ~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~~ 153 (216)
..... ..+...... -+.+|.....|
T Consensus 251 ~~~~g------G~~ls~~~~--~g~PI~fig~G 275 (443)
T 3dm5_A 251 GSAKG------GGALSAVAA--TGAPIKFIGTG 275 (443)
T ss_dssp SCSSH------HHHHHHHHT--TCCCEEEEECS
T ss_pred Ccccc------cHHHHHHHH--HCCCEEEEEcC
Confidence 86542 223333333 34566654444
No 19
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.02 E-value=0.35 Score=35.70 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=50.3
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---c---EEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---D---VVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---D---~IvlnK 118 (216)
...++.+.|...-..+..... -..+.+|.|+|+.+.... .. ...+..++... + ++|+||
T Consensus 65 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~------~~~~~~~~~~~~~~~~piilv~nK 129 (179)
T 1z0f_A 65 KLQIWDTAGQERFRAVTRSYY--------RGAAGALMVYDITRRSTY-NH------LSSWLTDARNLTNPNTVIILIGNK 129 (179)
T ss_dssp EEEEEECTTGGGTCHHHHHHH--------HTCSEEEEEEETTCHHHH-HT------HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEECCCChHhhhhHHHHh--------ccCCEEEEEEeCcCHHHH-HH------HHHHHHHHHHhcCCCCcEEEEEEC
Confidence 456778888654444433321 124678999999876432 11 22333334332 2 788899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.++.+. ..+++++..+..+ +++++++
T Consensus 130 ~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 158 (179)
T 1z0f_A 130 ADLEAQRDV--TYEEAKQFAEENG--LLFLEAS 158 (179)
T ss_dssp TTCGGGCCS--CHHHHHHHHHHTT--CEEEECC
T ss_pred ccccccccc--CHHHHHHHHHHcC--CEEEEEe
Confidence 999764331 3456666666543 5676643
No 20
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.99 E-value=0.4 Score=35.65 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=51.8
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH-hhcc------EEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFAD------VVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI-~~AD------~Ivln 117 (216)
...++.+.|..+...+..... -..+.+|.|+|+......- . ...+..++ ..+. +||+|
T Consensus 67 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~-~------~~~~~~~i~~~~~~~~~piilv~n 131 (187)
T 2a9k_A 67 QIDILDTAGQEDYAAIRDNYF--------RSGEGFLCVFSITEMESFA-A------TADFREQILRVKEDENVPFLLVGN 131 (187)
T ss_dssp EEEEEECCCTTCCHHHHHHHH--------HHCSEEEEEEETTCHHHHH-H------HHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred EEEEEECCCCcccHHHHHHHh--------ccCCEEEEEEECcCHHHHH-H------HHHHHHHHHHhcCCCCCCEEEEEE
Confidence 456889999876666554432 1356789999998754321 1 11122222 2222 68889
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+..+. ..+++++..+..+ .+++.++
T Consensus 132 K~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 161 (187)
T 2a9k_A 132 KSDLEDKRQV--SVEEAKNRAEQWN--VNYVETS 161 (187)
T ss_dssp CGGGGGGCCS--CHHHHHHHHHHTT--CEEEECC
T ss_pred CccccccCcc--CHHHHHHHHHHcC--CeEEEeC
Confidence 9999765332 3566666666654 4666644
No 21
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.57 E-value=0.72 Score=34.98 Aligned_cols=98 Identities=15% Similarity=0.230 Sum_probs=57.3
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh-hcc------EEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FAD------VVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~-~AD------~Ivln 117 (216)
...++.+.|......+..... -..+.++.|+|+......- . ...+..++. .+. +||+|
T Consensus 63 ~~~l~Dt~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~-~------~~~~~~~i~~~~~~~~~piilv~n 127 (206)
T 2bov_A 63 QIDILDTAGQEDYAAIRDNYF--------RSGEGFLCVFSITEMESFA-A------TADFREQILRVKEDENVPFLLVGN 127 (206)
T ss_dssp EEEEEECCCTTCCHHHHHHHH--------HHCSEEEEEEETTCHHHHH-H------HHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred EEEEEcCCChhhhHHHHHHHH--------hhCCEEEEEEECCCHHHHH-H------HHHHHHHHHHhcCCCCCCEEEEEe
Confidence 466889999877666654432 1356789999998764321 1 112223332 222 78899
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
|+|+.+..+. ..+++.+..+..+ +++++++. ....++.++
T Consensus 128 K~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 128 KSDLEDKRQV--SVEEAKNRAEQWN--VNYVETSAKTRANVDKVF 168 (206)
T ss_dssp CTTCGGGCCS--CHHHHHHHHHHHT--CEEEEECTTTCTTHHHHH
T ss_pred ccCccccccc--cHHHHHHHHHHhC--CeEEEEeCCCCCCHHHHH
Confidence 9999775432 3566666666655 46776543 233455554
No 22
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.18 E-value=0.35 Score=35.44 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=46.0
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---cc---EEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---AD---VVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD---~IvlnK 118 (216)
...++.+.|..+...+... .+ -..+.+|.|+|+...... .. ...+..++.. .+ ++|+||
T Consensus 56 ~l~i~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~-~~------~~~~~~~~~~~~~~~~piilv~nK 120 (170)
T 1z08_A 56 NLAIWDTAGQERFHALGPI-----YY---RDSNGAILVYDITDEDSF-QK------VKNWVKELRKMLGNEICLCIVGNK 120 (170)
T ss_dssp EEEEEECCCC-------CC-----SS---TTCSEEEEEEETTCHHHH-HH------HHHHHHHHHHHHGGGSEEEEEEEC
T ss_pred EEEEEECCCcHhhhhhHHH-----Hh---ccCCEEEEEEECcCHHHH-HH------HHHHHHHHHHhcCCCCeEEEEEEC
Confidence 4567788886543332221 11 134778999999875422 11 1122233322 22 788999
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.++.+. ..++.++..+..+ +++++++
T Consensus 121 ~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 149 (170)
T 1z08_A 121 IDLEKERHV--SIQEAESYAESVG--AKHYHTS 149 (170)
T ss_dssp GGGGGGCCS--CHHHHHHHHHHTT--CEEEEEB
T ss_pred ccccccccc--CHHHHHHHHHHcC--CeEEEec
Confidence 999775332 3456666666554 5666644
No 23
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.10 E-value=0.42 Score=35.28 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=49.7
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---cc---EEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---AD---VVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD---~IvlnK 118 (216)
...++++.|......+..... -..+.+|.|+|+.+-... .. ......++.. .+ ++|+||
T Consensus 64 ~~~~~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~piilv~nK 128 (179)
T 2y8e_A 64 RLQLWDTAGQERFRSLIPSYI--------RDSTVAVVVYDITNTNSF-HQ------TSKWIDDVRTERGSDVIIMLVGNK 128 (179)
T ss_dssp EEEEEEECCSGGGGGGSHHHH--------HTCSEEEEEEETTCHHHH-HT------HHHHHHHHHHHHTTSSEEEEEEEC
T ss_pred EEEEEECCCcHHHHHHHHHHh--------cCCCEEEEEEECCCHHHH-HH------HHHHHHHHHHhcCCCCcEEEEEEC
Confidence 456788999765444433221 134678999999864321 11 1222333322 23 788999
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.++.+. ..++.+...+..+ .++++++
T Consensus 129 ~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 157 (179)
T 2y8e_A 129 TDLSDKRQV--STEEGERKAKELN--VMFIETS 157 (179)
T ss_dssp GGGGGGCCS--CHHHHHHHHHHHT--CEEEEEB
T ss_pred CcccccCcC--CHHHHHHHHHHcC--CeEEEEe
Confidence 999765432 3455555665554 5666654
No 24
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.10 E-value=0.42 Score=36.28 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=49.5
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc------cEEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA------DVVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A------D~IvlnK 118 (216)
...++.+.|......+..... -..+.+|.|+|+......- . ...+..++... =+||+||
T Consensus 73 ~~~i~Dt~G~~~~~~~~~~~~--------~~~d~iilV~d~~~~~s~~-~------~~~~~~~i~~~~~~~~piiiv~NK 137 (192)
T 2fg5_A 73 KFLIWDTAGQERFHSLAPMYY--------RGSAAAVIVYDITKQDSFY-T------LKKWVKELKEHGPENIVMAIAGNK 137 (192)
T ss_dssp EEEEEEECCSGGGGGGTHHHH--------TTCSEEEEEEETTCTHHHH-H------HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEcCCCchhhHhhhHHhh--------ccCCEEEEEEeCCCHHHHH-H------HHHHHHHHHHhCCCCCcEEEEEEC
Confidence 456778888654443333221 1246789999997654221 1 12233333322 2688899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.+..+ ...+++++..+..+ +++++++
T Consensus 138 ~Dl~~~~~--v~~~~~~~~~~~~~--~~~~~~S 166 (192)
T 2fg5_A 138 CDLSDIRE--VPLKDAKEYAESIG--AIVVETS 166 (192)
T ss_dssp GGGGGGCC--SCHHHHHHHHHTTT--CEEEECB
T ss_pred cccccccc--cCHHHHHHHHHHcC--CEEEEEe
Confidence 99975432 13466666666554 6777654
No 25
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.71 E-value=0.85 Score=33.19 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=50.2
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh--------ccEEEE
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF--------ADVVIL 116 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~--------AD~Ivl 116 (216)
...++.++|..+...+...... ..+.+|.|+|+.+.... .. ......++.. -=+||+
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~-~~------~~~~~~~i~~~~~~~~~~pii~v~ 116 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSIS--------KGHAFILVYSITSRQSL-EE------LKPIYEQICEIKGDVESIPIMLVG 116 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHH--------HCSEEEEEEETTCHHHH-HT------THHHHHHHHHHHC---CCCEEEEE
T ss_pred EEEEEECCCchhhHHHHHHhcc--------cCCEEEEEEECcCHHHH-HH------HHHHHHHHHHHhCCCCCCCEEEEE
Confidence 4678999998776665544321 24678999999865422 11 1223333332 127888
Q ss_pred ccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 117 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
||+|+.+..+. .........+..+ +++++++
T Consensus 117 nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~S 147 (172)
T 2erx_A 117 NKCDESPSREV--QSSEAEALARTWK--CAFMETS 147 (172)
T ss_dssp ECGGGGGGCCS--CHHHHHHHHHHHT--CEEEECB
T ss_pred Ecccccccccc--CHHHHHHHHHHhC--CeEEEec
Confidence 99999765432 2234444444443 5666644
No 26
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.56 E-value=0.9 Score=33.81 Aligned_cols=88 Identities=18% Similarity=0.156 Sum_probs=50.2
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-c------cEEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-A------DVVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-A------D~Ivln 117 (216)
...++.+.|...-..+..... -..+.+|.|+|+.+....- . ......++.. + =+||+|
T Consensus 71 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~-~------~~~~~~~i~~~~~~~~~piilv~n 135 (195)
T 3bc1_A 71 HLQLWDTAGLERFRSLTTAFF--------RDAMGFLLLFDLTNEQSFL-N------VRNWISQLQMHAYSENPDIVLCGN 135 (195)
T ss_dssp EEEEEEECCSGGGHHHHHHTT--------TTCSEEEEEEETTCHHHHH-T------HHHHHHHHHHHSSSSSCCEEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHH--------cCCCEEEEEEECCCHHHHH-H------HHHHHHHHHHhcCCCCCCEEEEEE
Confidence 566788888865544443321 1357789999998754321 1 1223333332 1 278889
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+..+. ..+.+++..+..+ +++++++
T Consensus 136 K~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 165 (195)
T 3bc1_A 136 KSDLEDQRAV--KEEEARELAEKYG--IPYFETS 165 (195)
T ss_dssp CTTCGGGCCS--CHHHHHHHHHHHT--CCEEECC
T ss_pred Cccccccccc--CHHHHHHHHHHcC--CCEEEEE
Confidence 9999764321 3455555555554 4666544
No 27
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.38 E-value=1.4 Score=33.37 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=54.0
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc------cEEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA------DVVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A------D~IvlnK 118 (216)
...++.+.|......+..... -..+.+|.|+|+...... .. ...+..++..- =+||+||
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~piilv~nK 122 (203)
T 1zbd_A 58 KLQIWDTAGLERYRTITTAYY--------RGAMGFILMYDITNEESF-NA------VQDWSTQIKTYSWDNAQVLLVGNK 122 (203)
T ss_dssp EEEEEEECCSGGGHHHHHTTG--------GGCSEEEEEEETTCHHHH-HH------HHHHHHHHHHHSCSSCEEEEEEEC
T ss_pred EEEEEECCCchhhcchHHHhh--------cCCCEEEEEEECcCHHHH-HH------HHHHHHHHHHhcCCCCCEEEEEEC
Confidence 456788899865544433221 135678999999865422 11 12233344321 2688899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
+|+.+.... ..+.+++..+.++ +++++++. ....+..++
T Consensus 123 ~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 123 CDMEDERVV--SSERGRQLADHLG--FEFFEASAKDNINVKQTF 162 (203)
T ss_dssp TTCTTSCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSSHHHH
T ss_pred cccCccccc--CHHHHHHHHHHCC--CeEEEEECCCCCCHHHHH
Confidence 999775432 3355555555554 46776543 223444444
No 28
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.38 E-value=0.3 Score=36.93 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=41.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccc-eeeccEEEEEccc-chHHHHhhcccCCChhHHH-HHHhh---------c
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESA-VRLDSIITVVDAK-NLLFQIDKYRHLSSYPEAI-HQIAF---------A 111 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~-~~l~~vI~vVDa~-~~~~~l~~~~~~~~~~~~~-~QI~~---------A 111 (216)
....++.+.|............ ... -..+.+|.|+|+. .... +.. ..... .-+.. -
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~-----~~~~~~~~~~i~v~d~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~p 158 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYL-----KTRAKFVKGLIFMVDSTVDPKK-LTT------TAEFLVDILSITESSCENGID 158 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHH-----HHHGGGEEEEEEEEETTCCHHH-HHH------HHHHHHHHHHHHHHHSTTCCC
T ss_pred CeEEEEECCCCchHHHHHHHHH-----HhhcccCCEEEEEEECCCCchh-HHH------HHHHHHHHHhhhhhccccCCC
Confidence 4567888888865533332211 110 1257889999998 3322 111 11111 11111 1
Q ss_pred cEEEEccCCCCCCCCccchHHHHHHHH
Q 027979 112 DVVILNKVDLVSPERSGDSLDELEKEI 138 (216)
Q Consensus 112 D~IvlnK~D~v~~~~~~~~l~~i~~~l 138 (216)
=+||+||+|+.+... .+++.+.+
T Consensus 159 ~ilv~nK~Dl~~~~~----~~~~~~~l 181 (193)
T 2ged_A 159 ILIACNKSELFTARP----PSKIKDAL 181 (193)
T ss_dssp EEEEEECTTSTTCCC----HHHHHHHH
T ss_pred EEEEEEchHhcCCCC----HHHHHHHH
Confidence 268889999988654 34444444
No 29
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.18 E-value=0.97 Score=33.62 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=49.7
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---c---EEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---D---VVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---D---~IvlnK 118 (216)
...++.+.|......+..... -..+.+|.|+|+.+.... .. ......++... + +||+||
T Consensus 60 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~------~~~~~~~~~~~~~~~~piilv~nK 124 (186)
T 2bme_A 60 KLQIWDTAGQERFRSVTRSYY--------RGAAGALLVYDITSRETY-NA------LTNWLTDARMLASQNIVIILCGNK 124 (186)
T ss_dssp EEEEEEECCSGGGHHHHHTTS--------TTCSEEEEEEETTCHHHH-HT------HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCCcHHHHHHHHHHH--------hcCCEEEEEEECcCHHHH-HH------HHHHHHHHHHhcCCCCcEEEEEEC
Confidence 456788888765554433221 135678999999875432 11 22233333322 2 788899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.+..+. ...+..+..+.. ..++++++
T Consensus 125 ~Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~S 153 (186)
T 2bme_A 125 KDLDADREV--TFLEASRFAQEN--ELMFLETS 153 (186)
T ss_dssp GGGGGGCCS--CHHHHHHHHHHT--TCEEEECC
T ss_pred ccccccccc--CHHHHHHHHHHc--CCEEEEec
Confidence 999754322 334555555543 36777654
No 30
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.11 E-value=0.68 Score=34.84 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=48.2
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc------cEEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA------DVVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A------D~IvlnK 118 (216)
...++.+.|......+.... + -..+.+|.|+|+.+-... .. ...+..++... =+||+||
T Consensus 72 ~~~l~Dt~G~~~~~~~~~~~-----~---~~~d~ii~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~piilv~nK 136 (189)
T 2gf9_A 72 KLQIWDTAGQERYRTITTAY-----Y---RGAMGFLLMYDIANQESF-AA------VQDWATQIKTYSWDNAQVILVGNK 136 (189)
T ss_dssp EEEEEECCSCCSSCCSGGGG-----G---TTCSEEEEEEETTCHHHH-HT------HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCCcHHHhhhHHHh-----c---cCCCEEEEEEECCCHHHH-HH------HHHHHHHHHHhcCCCCCEEEEEEC
Confidence 44567788865433222211 1 135678999999765422 11 22333444432 2788899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.+..+. ..+++++..+.++ .++++++
T Consensus 137 ~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 165 (189)
T 2gf9_A 137 CDLEDERVV--PAEDGRRLADDLG--FEFFEAS 165 (189)
T ss_dssp TTCGGGCCS--CHHHHHHHHHHHT--CEEEECB
T ss_pred cccccccCC--CHHHHHHHHHHcC--CeEEEEE
Confidence 999765321 2345555555554 4666644
No 31
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.11 E-value=0.76 Score=33.89 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=46.6
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-c---------cEE
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-A---------DVV 114 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-A---------D~I 114 (216)
...++.+.|......+... .+ -..+.+|.|+|+...... .. ...+..++.. + =+|
T Consensus 59 ~~~l~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~-~~------~~~~~~~~~~~~~~~~~~~~p~il 123 (182)
T 1ky3_A 59 TMQVWDTAGQERFQSLGVA-----FY---RGADCCVLVYDVTNASSF-EN------IKSWRDEFLVHANVNSPETFPFVI 123 (182)
T ss_dssp EEEEECCC----------C-----CS---TTCCEEEEEEETTCHHHH-HT------HHHHHHHHHHHHCCSCTTTCCEEE
T ss_pred EEEEEECCCChHhhhhhHH-----Hh---hcCCEEEEEEECCChHHH-HH------HHHHHHHHHHHhcccCcCCCcEEE
Confidence 4567788885433332221 11 135788999999876432 11 1222333322 1 278
Q ss_pred EEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 115 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 115 vlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
|+||+|+.+.... ...+++.+..+. .+..++++++. .....+.++
T Consensus 124 v~nK~Dl~~~~~~-v~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 169 (182)
T 1ky3_A 124 LGNKIDAEESKKI-VSEKSAQELAKS-LGDIPLFLTSAKNAINVDTAF 169 (182)
T ss_dssp EEECTTSCGGGCC-SCHHHHHHHHHH-TTSCCEEEEBTTTTBSHHHHH
T ss_pred EEECCcccccccc-CCHHHHHHHHHh-cCCCeEEEEecCCCCCHHHHH
Confidence 8999999654321 123444444432 34566766542 233444443
No 32
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.00 E-value=0.4 Score=39.95 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=50.7
Q ss_pred CEEEEecCCCC-CcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh---hccEEEEccCC
Q 027979 45 DHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 120 (216)
Q Consensus 45 d~IiIE~sG~a-~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~---~AD~IvlnK~D 120 (216)
..+++.|.|.. .|...+............-..+.++.|+|+..+... -..+.+++. .--++++||+|
T Consensus 57 ~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~---------~~~i~~~l~~~~~P~ilvlNK~D 127 (301)
T 1ega_A 57 QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPD---------DEMVLNKLREGKAPVILAVNKVD 127 (301)
T ss_dssp EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHH---------HHHHHHHHHSSSSCEEEEEESTT
T ss_pred eEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHH---------HHHHHHHHHhcCCCEEEEEECcc
Confidence 46788999997 555433321111111222346778999999763211 112334454 44688999999
Q ss_pred CCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 121 LVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 121 ~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+.+.. ..+.+..+.+.+..+...+++++
T Consensus 128 ~~~~~---~~~~~~l~~l~~~~~~~~~i~iS 155 (301)
T 1ega_A 128 NVQEK---ADLLPHLQFLASQMNFLDIVPIS 155 (301)
T ss_dssp TCCCH---HHHHHHHHHHHTTSCCSEEEECC
T ss_pred cCccH---HHHHHHHHHHHHhcCcCceEEEE
Confidence 98721 12333333344433344666644
No 33
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.88 E-value=1.1 Score=33.95 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=50.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---cc---EEEEc
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---AD---VVILN 117 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD---~Ivln 117 (216)
....++.+.|......+..... -..+.+|.|+|+.+....- . ...+...+.. .+ +||+|
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~~--------~~~d~iilV~D~~~~~s~~-~------~~~~~~~i~~~~~~~~piilV~N 139 (192)
T 2il1_A 75 IRLQIWDTAGQERFNSITSAYY--------RSAKGIILVYDITKKETFD-D------LPKWMKMIDKYASEDAELLLVGN 139 (192)
T ss_dssp EEEEEEEECCSGGGHHHHHHHH--------HHCSEEEEEEETTCHHHHH-T------HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEEeCCCcHHHHHHHHHHh--------cCCCEEEEEEECcCHHHHH-H------HHHHHHHHHHhcCCCCcEEEEEE
Confidence 3467789999765554443322 1356789999998754321 1 1222233322 23 78889
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+..+. ..+++++..+.+ ...++++++
T Consensus 140 K~Dl~~~~~v--~~~~~~~~~~~~-~~~~~~~~S 170 (192)
T 2il1_A 140 KLDCETDREI--TRQQGEKFAQQI-TGMRFCEAS 170 (192)
T ss_dssp CGGGGGGCCS--CHHHHHHHHHTS-TTCEEEECB
T ss_pred Cccccccccc--CHHHHHHHHHhc-CCCeEEEEe
Confidence 9999765331 234455554443 346777654
No 34
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.59 E-value=1.5 Score=32.34 Aligned_cols=88 Identities=15% Similarity=0.173 Sum_probs=47.5
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc------cEEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA------DVVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A------D~IvlnK 118 (216)
...++.+.|...-..+..... -..+.+|.|+|+...... .. ...+..++... =+||+||
T Consensus 62 ~~~i~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~------~~~~~~~~~~~~~~~~p~i~v~nK 126 (181)
T 2efe_B 62 KFEIWDTAGQERYHSLAPMYY--------RGAAAAIIVFDVTNQASF-ER------AKKWVQELQAQGNPNMVMALAGNK 126 (181)
T ss_dssp EEEEEECCCSGGGGGGTHHHH--------TTCSEEEEEEETTCHHHH-HH------HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCCChhhhhhhHHHh--------ccCCEEEEEEECCCHHHH-HH------HHHHHHHHHHhcCCCCcEEEEEEC
Confidence 456778888643332222211 125778999999865432 11 11223333322 2678899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.+..+. ..+++++..+.. +.++++++
T Consensus 127 ~Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~S 155 (181)
T 2efe_B 127 SDLLDARKV--TAEDAQTYAQEN--GLFFMETS 155 (181)
T ss_dssp TTCTTTCCS--CHHHHHHHHHHT--TCEEEECC
T ss_pred CcccccccC--CHHHHHHHHHHc--CCEEEEEE
Confidence 999765432 345566665543 35666643
No 35
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.48 E-value=0.82 Score=34.91 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=51.5
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc------cEEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA------DVVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A------D~IvlnK 118 (216)
...++.+.|......+.... + -..+.+|.|+|+......- . ...+...+... =+||+||
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~-----~---~~~d~vilv~d~~~~~s~~-~------~~~~~~~i~~~~~~~~piilv~nK 122 (206)
T 2bcg_Y 58 KLQIWDTAGQERFRTITSSY-----Y---RGSHGIIIVYDVTDQESFN-G------VKMWLQEIDRYATSTVLKLLVGNK 122 (206)
T ss_dssp EEEEECCTTTTTTTCCCGGG-----G---TTCSEEEEEEETTCHHHHH-H------HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCChHHHHHHHHHh-----c---cCCCEEEEEEECcCHHHHH-H------HHHHHHHHHHhcCCCCCEEEEEEC
Confidence 45677888865433222111 1 1347899999998754321 1 12223333321 1788999
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
+|+.+..+. ..+..++..+..+ .++++++. .....+.++
T Consensus 123 ~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 123 CDLKDKRVV--EYDVAKEFADANK--MPFLETSALDSTNVEDAF 162 (206)
T ss_dssp TTCTTTCCS--CHHHHHHHHHHTT--CCEEECCTTTCTTHHHHH
T ss_pred CCCcccccc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence 999875432 2345555554443 56766442 233444544
No 36
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.42 E-value=1.4 Score=31.85 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=50.9
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh----cc---EEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF----AD---VVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~----AD---~Ivln 117 (216)
...++.++|......+...... ..+.++.|+|+......- . ......++.. .+ ++|+|
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~------~~~~~~~i~~~~~~~~~piilv~n 116 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMK--------NGQGFALVYSITAQSTFN-D------LQDLREQILRVKDTEDVPMILVGN 116 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHH--------HCSEEEEEEETTCHHHHH-T------HHHHHHHHHHHHCCSCCCEEEEEE
T ss_pred EEEEEECCChHHHHHHHHHHhc--------cCCEEEEEEECCCHHHHH-H------HHHHHHHHHHhhCcCCCcEEEEEE
Confidence 4568899998766655544321 256789999998654221 1 1122222221 12 68889
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+.... ..+++.+..+.+ +..++++++
T Consensus 117 K~Dl~~~~~~--~~~~~~~~~~~~-~~~~~~~~S 147 (167)
T 1c1y_A 117 KCDLEDERVV--GKEQGQNLARQW-CNCAFLESS 147 (167)
T ss_dssp CTTCGGGCCS--CHHHHHHHHHHT-TSCEEEECB
T ss_pred CccccccccC--CHHHHHHHHHHc-cCCcEEEec
Confidence 9999765431 245555555543 456777654
No 37
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.35 E-value=1.3 Score=32.60 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=44.5
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---cc---EEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---AD---VVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD---~IvlnK 118 (216)
...++.+.|......+... .+ -..+.+|.|+|+...... .. ......++.. .+ +||+||
T Consensus 61 ~~~~~Dt~G~~~~~~~~~~-----~~---~~~d~ii~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~piilv~nK 125 (180)
T 2g6b_A 61 KLQMWDTAGQERFRSVTHA-----YY---RDAHALLLLYDVTNKASF-DN------IQAWLTEIHEYAQHDVALMLLGNK 125 (180)
T ss_dssp EEEEEECCCC--------C-----CG---GGCSEEEEEEETTCHHHH-HT------HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCCcHHHHHHHHH-----Hc---cCCCEEEEEEECCCHHHH-HH------HHHHHHHHHHhCCCCCcEEEEEEC
Confidence 4456778886443322221 11 235788999999875432 11 1222333322 22 688899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.++.+. ..+..++..+..+ +++++++
T Consensus 126 ~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 154 (180)
T 2g6b_A 126 VDSAHERVV--KREDGEKLAKEYG--LPFMETS 154 (180)
T ss_dssp CSTTSCCCS--CHHHHHHHHHHHT--CCEEECC
T ss_pred cccCccccc--CHHHHHHHHHHcC--CeEEEEe
Confidence 999875432 2344555555443 4666543
No 38
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.30 E-value=1.8 Score=31.06 Aligned_cols=87 Identities=21% Similarity=0.122 Sum_probs=48.4
Q ss_pred EEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh-h---c---cEEEEcc
Q 027979 46 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-F---A---DVVILNK 118 (216)
Q Consensus 46 ~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~-~---A---D~IvlnK 118 (216)
..++.+.|......+..... -..+.++.|+|+......- + ......++. . . =++|+||
T Consensus 53 ~~l~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~-~------~~~~~~~i~~~~~~~~~piilv~nK 117 (167)
T 1kao_A 53 LEILDTAGTEQFASMRDLYI--------KNGQGFILVYSLVNQQSFQ-D------IKPMRDQIIRVKRYEKVPVILVGNK 117 (167)
T ss_dssp EEEEECCCTTCCHHHHHHHH--------HHCSEEEEEEETTCHHHHH-H------HHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred EEEEECCCchhhHHHHHHHh--------ccCCEEEEEEeCCCHHHHH-H------HHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 56889999877666554432 1236789999998754221 1 111122221 1 1 2788899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.+..+. ..++.++..+..+ .++++++
T Consensus 118 ~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 146 (167)
T 1kao_A 118 VDLESEREV--SSSEGRALAEEWG--CPFMETS 146 (167)
T ss_dssp GGGGGGCCS--CHHHHHHHHHHHT--SCEEEEC
T ss_pred CcccccccC--CHHHHHHHHHHhC--CCEEEec
Confidence 999765432 2344555555443 4566543
No 39
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.24 E-value=1.2 Score=33.49 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=48.4
Q ss_pred EEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc------cEEEEccCC
Q 027979 47 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA------DVVILNKVD 120 (216)
Q Consensus 47 IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A------D~IvlnK~D 120 (216)
.++.+.|......+..... -..+.+|.|+|+......- . ......++... =+||+||+|
T Consensus 77 ~i~Dt~G~~~~~~~~~~~~--------~~~d~vi~v~D~~~~~s~~-~------~~~~l~~i~~~~~~~~piilv~nK~D 141 (193)
T 2oil_A 77 QIWDTAGLERYRAITSAYY--------RGAVGALLVFDLTKHQTYA-V------VERWLKELYDHAEATIVVMLVGNKSD 141 (193)
T ss_dssp EEEEESCCCTTCTTHHHHH--------TTCCEEEEEEETTCHHHHH-T------HHHHHHHHHTTSCTTCEEEEEEECGG
T ss_pred EEEeCCCchhhhhhhHHHh--------ccCCEEEEEEECCCHHHHH-H------HHHHHHHHHHhcCCCCeEEEEEECCC
Confidence 4678888765544443322 1246789999998754321 1 12233344322 278889999
Q ss_pred CCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 121 LVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 121 ~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+.+..+. ..+..++..+.. ++++++++
T Consensus 142 l~~~~~~--~~~~~~~~~~~~--~~~~~~~S 168 (193)
T 2oil_A 142 LSQAREV--PTEEARMFAENN--GLLFLETS 168 (193)
T ss_dssp GGGGCCS--CHHHHHHHHHHT--TCEEEEEC
T ss_pred ccccccc--CHHHHHHHHHHc--CCEEEEEe
Confidence 9765321 345555555543 46777654
No 40
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.12 E-value=0.65 Score=34.26 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=37.9
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhhcc-----EEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEe
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-----VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS 150 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD-----~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~ 150 (216)
.+.+|.|+|+..-... .. ...+..++...- +||+||+|+.+.... ......+..+..+ ++++++
T Consensus 82 ~d~~i~v~d~~~~~s~-~~------~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~ 150 (181)
T 3tw8_B 82 THGVIVVYDVTSAESF-VN------VKRWLHEINQNCDDVCRILVGNKNDDPERKVV--ETEDAYKFAGQMG--IQLFET 150 (181)
T ss_dssp CSEEEEEEETTCHHHH-HH------HHHHHHHHHHHCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CCEEEC
T ss_pred CCEEEEEEECCCHHHH-HH------HHHHHHHHHHhCCCCCEEEEEECCCCchhccc--CHHHHHHHHHHcC--CeEEEE
Confidence 4778999999875322 11 122344454433 889999998765432 2344555555444 466654
Q ss_pred e
Q 027979 151 V 151 (216)
Q Consensus 151 ~ 151 (216)
+
T Consensus 151 S 151 (181)
T 3tw8_B 151 S 151 (181)
T ss_dssp B
T ss_pred E
Confidence 4
No 41
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.11 E-value=0.11 Score=42.81 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=49.8
Q ss_pred CCEEEEecCCCCCcHHHH------HHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEc
Q 027979 44 LDHILLETTGLANPAPLA------SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN 117 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~------~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~Ivln 117 (216)
....++-+.|..+..++. +.+... .+ ..=..+.+|.|+|+.++...+.- -........--++++|
T Consensus 50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~-~~-~~~~~d~ii~VvD~~~~~~~~~~-------~~~l~~~~~p~ivv~N 120 (274)
T 3i8s_A 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACH-YI-LSGDADLLINVVDASNLERNLYL-------TLQLLELGIPCIVALN 120 (274)
T ss_dssp CEEEEEECCCCSCSCC----CCHHHHHHHH-HH-HHTCCSEEEEEEEGGGHHHHHHH-------HHHHHHHTCCEEEEEE
T ss_pred CceEEEECcCCCccccccccCCHHHHHHHH-HH-hhcCCCEEEEEecCCChHHHHHH-------HHHHHhcCCCEEEEEE
Confidence 456789999987654221 111100 00 00146789999999986543211 1112233445588999
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+........+++.+.+ + +++++++
T Consensus 121 K~Dl~~~~~~~~~~~~l~~~l---g--~~~i~~S 149 (274)
T 3i8s_A 121 MLDIAEKQNIRIEIDALSARL---G--CPVIPLV 149 (274)
T ss_dssp CHHHHHHTTEEECHHHHHHHH---T--SCEEECC
T ss_pred CccchhhhhHHHHHHHHHHhc---C--CCEEEEE
Confidence 999876543212234444333 2 5666644
No 42
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.09 E-value=0.69 Score=35.20 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=51.3
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc----------cEE
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA----------DVV 114 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A----------D~I 114 (216)
...++.+.|......+... .+ -..+.+|.|+|+......- . ...+..++... =+|
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~~~~~piil 122 (207)
T 1vg8_A 58 TMQIWDTAGQERFQSLGVA-----FY---RGADCCVLVFDVTAPNTFK-T------LDSWRDEFLIQASPRDPENFPFVV 122 (207)
T ss_dssp EEEEEEECSSGGGSCSCCG-----GG---TTCSEEEEEEETTCHHHHH-T------HHHHHHHHHHHHCCSSGGGSCEEE
T ss_pred EEEEEeCCCcHHHHHhHHH-----HH---hCCcEEEEEEECCCHHHHH-H------HHHHHHHHHHhcccccCCCCcEEE
Confidence 4577888886432221111 11 1357899999998654321 1 12222232211 278
Q ss_pred EEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhhc
Q 027979 115 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVLN 162 (216)
Q Consensus 115 vlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~~ 162 (216)
|+||+|+.+... ..+.+.+..+. ....++++++. ....++.++.
T Consensus 123 v~nK~Dl~~~~~---~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~ 167 (207)
T 1vg8_A 123 LGNKIDLENRQV---ATKRAQAWCYS-KNNIPYFETSAKEAINVEQAFQ 167 (207)
T ss_dssp EEECTTSSCCCS---CHHHHHHHHHH-TTSCCEEECBTTTTBSHHHHHH
T ss_pred EEECCCCccccc---CHHHHHHHHHh-cCCceEEEEeCCCCCCHHHHHH
Confidence 889999985432 23444444432 45567776543 2344555543
No 43
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=91.03 E-value=0.022 Score=48.91 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=26.3
Q ss_pred eeccEEEEEcccchH--HHHhhcccCCChhHHHHHHhhc--------cEEEEccCCCCCC
Q 027979 75 RLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQIAFA--------DVVILNKVDLVSP 124 (216)
Q Consensus 75 ~l~~vI~vVDa~~~~--~~l~~~~~~~~~~~~~~QI~~A--------D~IvlnK~D~v~~ 124 (216)
+.+.+|.|+|+..+. ..+.. +..+..++... -+||+||+|+.+.
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~------~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDD------YLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHH------HHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred hccEEEEEEECCcccccChHHH------HHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 467899999997531 11111 12233444332 3899999999864
No 44
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.03 E-value=1.8 Score=33.05 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=49.5
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---c---EEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---D---VVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---D---~IvlnK 118 (216)
...|+.+.|...-..+..... -..+.+|.|+|+.+.... .. ...+..++... + +||+||
T Consensus 79 ~l~i~Dt~G~~~~~~~~~~~~--------~~~d~iilv~D~~~~~s~-~~------~~~~~~~i~~~~~~~~piilv~NK 143 (201)
T 2hup_A 79 KLQIWDTAGQERFRTITQSYY--------RSANGAILAYDITKRSSF-LS------VPHWIEDVRKYAGSNIVQLLIGNK 143 (201)
T ss_dssp EEEEECCTTCGGGHHHHHHHH--------TTCSEEEEEEETTBHHHH-HT------HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEECCCcHhHHHHHHHHH--------hhCCEEEEEEECCCHHHH-HH------HHHHHHHHHHhcCCCCCEEEEEEC
Confidence 445677888755444443322 124678999999875432 11 22333444332 2 678899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.+..+. ..+++++..+..+ ..++++++
T Consensus 144 ~Dl~~~~~v--~~~~~~~~~~~~~-~~~~~~~S 173 (201)
T 2hup_A 144 SDLSELREV--SLAEAQSLAEHYD-ILCAIETS 173 (201)
T ss_dssp TTCGGGCCS--CHHHHHHHHHHTT-CSEEEECB
T ss_pred Ccccccccc--CHHHHHHHHHHcC-CCEEEEEe
Confidence 999764321 3456666665543 22666644
No 45
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.89 E-value=2.6 Score=30.78 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=49.5
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-c---------cEE
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-A---------DVV 114 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-A---------D~I 114 (216)
...++.+.|......+..... -..+.++.|+|+......- . ...+..++.. + =++
T Consensus 57 ~~~i~Dt~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~~~~~p~i~ 121 (177)
T 1wms_A 57 TMQIWDTAGQERFRSLRTPFY--------RGSDCCLLTFSVDDSQSFQ-N------LSNWKKEFIYYADVKEPESFPFVI 121 (177)
T ss_dssp EEEEEECCCCGGGHHHHGGGG--------TTCSEEEEEEETTCHHHHH-T------HHHHHHHHHHHHTCSCTTTSCEEE
T ss_pred EEEEEeCCCchhhhhhHHHHH--------hcCCEEEEEEECcCHHHHH-H------HHHHHHHHHHHccccccCCCcEEE
Confidence 567788999766555443321 1246789999998764321 1 1222233321 1 278
Q ss_pred EEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 115 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 115 vlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+||+|+.+.+. ..+++.+..+. ....++++++
T Consensus 122 v~nK~Dl~~~~~---~~~~~~~~~~~-~~~~~~~~~S 154 (177)
T 1wms_A 122 LGNKIDISERQV---STEEAQAWCRD-NGDYPYFETS 154 (177)
T ss_dssp EEECTTCSSCSS---CHHHHHHHHHH-TTCCCEEECC
T ss_pred EEECCccccccc---CHHHHHHHHHh-cCCceEEEEe
Confidence 889999974332 34555555543 3456677654
No 46
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.69 E-value=0.53 Score=42.42 Aligned_cols=74 Identities=23% Similarity=0.248 Sum_probs=43.8
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEccCC
Q 027979 42 ERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 120 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P~-~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~IvlnK~D 120 (216)
..+|++||.|.|..... .+.+.+. .+...+..+.++.||||......+. ....+.+-...+.||+||+|
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~---~~~~~i~pd~vllVvDa~~g~~~~~-------~a~~~~~~~~i~gvVlNK~D 251 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEML---QVANAIQPDNIVYVMDASIGQACEA-------QAKAFKDKVDVASVIVTKLD 251 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHH---HHHHHHCCSEEEEEEETTCCTTHHH-------HHHHHHHHHCCCCEEEECTT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHH---HHHhhhcCceEEEEEeccccccHHH-------HHHHHHhhcCceEEEEeCCc
Confidence 56899999999998653 3333221 0112235678899999987533211 11111111122689999999
Q ss_pred CCCCC
Q 027979 121 LVSPE 125 (216)
Q Consensus 121 ~v~~~ 125 (216)
.....
T Consensus 252 ~~~~~ 256 (504)
T 2j37_W 252 GHAKG 256 (504)
T ss_dssp SCCCC
T ss_pred cccch
Confidence 87543
No 47
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.68 E-value=1.9 Score=32.25 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=49.2
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh-h--------ccEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-F--------ADVV 114 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~-~--------AD~I 114 (216)
....++.+.|...-..+.... + -..+.+|.|+|+......- . ......++. . -=+|
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~-----~---~~~d~ii~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~~~~piil 131 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEHY-----Y---KEGQAIIFVIDSSDRLRMV-V------AKEELDTLLNHPDIKHRRIPILF 131 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGGG-----G---GGCSEEEEEEETTCHHHHH-H------HHHHHHHHHHSTTTTTSCCCEEE
T ss_pred EEEEEEECCCCHHHHHHHHHH-----H---hcCCEEEEEEECCCHHHHH-H------HHHHHHHHHhChhhccCCCeEEE
Confidence 467888999976544333221 1 1347899999998753211 1 111122221 1 1268
Q ss_pred EEccCCCCCCCCccchHHHHHHHHH--hhC-CCCEEEEee
Q 027979 115 ILNKVDLVSPERSGDSLDELEKEIH--EIN-SLAHVIRSV 151 (216)
Q Consensus 115 vlnK~D~v~~~~~~~~l~~i~~~l~--~lN-P~A~iv~~~ 151 (216)
|+||+|+.+.. ..+++.+.++ .+. ...++++++
T Consensus 132 v~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 167 (190)
T 2h57_A 132 FANKMDLRDAV----TSVKVSQLLCLENIKDKPWHICASD 167 (190)
T ss_dssp EEECTTSTTCC----CHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred EEeCcCcccCC----CHHHHHHHhChhhccCCceEEEEcc
Confidence 88999998753 2466666653 222 345666544
No 48
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=90.63 E-value=0.43 Score=41.37 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=53.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchH--HHHhhcccCCChhHHHHHHhhcc-EEEEccCC
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQIAFAD-VVILNKVD 120 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~--~~l~~~~~~~~~~~~~~QI~~AD-~IvlnK~D 120 (216)
..+.++.|.|-.+-...... ..-..+.+|.|+|+.... .+... +-....++..-. ++++||+|
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~--------~~~~~D~~ilVvda~~~~~~~qt~~------~~~~~~~~~~~~iivviNK~D 140 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLS--------GAALMDGAILVVAANEPFPQPQTRE------HFVALGIIGVKNLIIVQNKVD 140 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHH--------HHTTCSEEEEEEETTSCSSCHHHHH------HHHHHHHHTCCCEEEEEECGG
T ss_pred ceEEEEECCCcHHHHHHHHH--------HHhhCCEEEEEEECCCCCCcHHHHH------HHHHHHHcCCCCEEEEEECcc
Confidence 35678999996543322221 112467899999998632 12111 111223333323 56889999
Q ss_pred CCCCCCccchHHHHHHHHHhhCC-CCEEEEeec-CCCChhhhh
Q 027979 121 LVSPERSGDSLDELEKEIHEINS-LAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 121 ~v~~~~~~~~l~~i~~~l~~lNP-~A~iv~~~~-~~v~~~~l~ 161 (216)
+++.++.....+++++.++..++ .+++++++. ....++.++
T Consensus 141 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~ 183 (403)
T 3sjy_A 141 VVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLI 183 (403)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHH
Confidence 99864211122344444443333 567776543 223344444
No 49
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.51 E-value=1.4 Score=33.38 Aligned_cols=88 Identities=17% Similarity=0.085 Sum_probs=46.4
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-cc--------EEE
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-AD--------VVI 115 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-AD--------~Iv 115 (216)
...++.+.|......+... .+ -..+.+|.|+|+.+.... .. ...+..++.. .. +||
T Consensus 74 ~~~l~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~~~~piilv 138 (208)
T 2yc2_C 74 ELFLLDTAGSDLYKEQISQ-----YW---NGVYYAILVFDVSSMESF-ES------CKAWFELLKSARPDRERPLRAVLV 138 (208)
T ss_dssp EEEEEETTTTHHHHHHHST-----TC---CCCCEEEEEEETTCHHHH-HH------HHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred EEEEEECCCcHHHHHHHHH-----HH---hhCcEEEEEEECCCHHHH-HH------HHHHHHHHHHhhcccccCCcEEEE
Confidence 4677888887533332221 11 135789999999875432 11 1223333332 22 788
Q ss_pred EccCCCCC-CCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 116 LNKVDLVS-PERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 116 lnK~D~v~-~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+||+|+.+ ..+ ...+++.+..+.++ +++++++
T Consensus 139 ~nK~Dl~~~~~~--v~~~~~~~~~~~~~--~~~~~~S 171 (208)
T 2yc2_C 139 ANKTDLPPQRHQ--VRLDMAQDWATTNT--LDFFDVS 171 (208)
T ss_dssp EECC-------C--CCHHHHHHHHHHTT--CEEEECC
T ss_pred EECcccchhhcc--CCHHHHHHHHHHcC--CEEEEec
Confidence 89999987 332 13466667776665 5777644
No 50
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.50 E-value=1.8 Score=31.40 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=47.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---cc---EEEEc
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---AD---VVILN 117 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD---~Ivln 117 (216)
....++.++|......+..... -..+.+|.|+|+.+-...- . ...+..++.. .+ ++|.|
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~-~------~~~~~~~l~~~~~~~~~iilv~n 119 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYY--------RGSAAAIIVYDITKEETFS-T------LKNWVRELRQHGPPSIVVAIAGN 119 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHH--------TTCSEEEEEEETTCHHHHH-H------HHHHHHHHHHHSCTTSEEEEEEE
T ss_pred EEEEEEcCCCchhhhcccHhhC--------cCCCEEEEEEECcCHHHHH-H------HHHHHHHHHHhCCCCCcEEEEEE
Confidence 3456889999855444433221 1236789999998754321 1 1122233332 23 34459
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+..+. ..+......+..+ .++++++
T Consensus 120 K~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~S 149 (170)
T 1z0j_A 120 KCDLTDVREV--MERDAKDYADSIH--AIFVETS 149 (170)
T ss_dssp CTTCGGGCCS--CHHHHHHHHHHTT--CEEEECB
T ss_pred CCcccccccc--CHHHHHHHHHHcC--CEEEEEe
Confidence 9999875432 2344444444443 5676644
No 51
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.43 E-value=0.33 Score=39.52 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=49.3
Q ss_pred CEEEEecCCCCCcHH------HHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc----cEE
Q 027979 45 DHILLETTGLANPAP------LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA----DVV 114 (216)
Q Consensus 45 d~IiIE~sG~a~P~~------i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A----D~I 114 (216)
...++.+.|..+..+ +...+.. .-..+.+|.|+|+.++...+. +..|+... -++
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~------~~~~d~vi~v~D~~~~~~~~~----------~~~~~~~~~~~p~il 114 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFIL------DGNADVIVDIVDSTCLMRNLF----------LTLELFEMEVKNIIL 114 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHH------TTCCSEEEEEEEGGGHHHHHH----------HHHHHHHTTCCSEEE
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhh------ccCCcEEEEEecCCcchhhHH----------HHHHHHhcCCCCEEE
Confidence 467899999875433 2222110 113678999999998754331 23444433 388
Q ss_pred EEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 115 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 115 vlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
++||+|+.+........+.+.+.+ + +++++++
T Consensus 115 v~NK~Dl~~~~~~~~~~~~l~~~l---g--~~~~~~S 146 (271)
T 3k53_A 115 VLNKFDLLKKKGAKIDIKKMRKEL---G--VPVIPTN 146 (271)
T ss_dssp EEECHHHHHHHTCCCCHHHHHHHH---S--SCEEECB
T ss_pred EEEChhcCcccccHHHHHHHHHHc---C--CcEEEEE
Confidence 899999765432212234444443 2 5677654
No 52
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.38 E-value=1.5 Score=32.92 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=52.4
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh------ccEEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF------ADVVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~------AD~IvlnK 118 (216)
...++.+.|......+..... -..+.+|.|+|+.+.... .. ......++.. -=+||+||
T Consensus 66 ~~~i~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~p~ilv~nK 130 (196)
T 3tkl_A 66 KLQIWDTAGQERFRTITSSYY--------RGAHGIIVVYDVTDQESF-NN------VKQWLQEIDRYASENVNKLLVGNK 130 (196)
T ss_dssp EEEEEEECCSGGGCTTHHHHH--------TTCSEEEEEEETTCHHHH-HT------HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEECCCcHhhhhhHHHHH--------hhCCEEEEEEECcCHHHH-HH------HHHHHHHHHHhcCCCCCEEEEEEC
Confidence 456678888654443333221 124678999999875432 11 1222233322 23788899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
+|+.+.... ..+..++..+.++ +++++++. .....+.++
T Consensus 131 ~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~ 170 (196)
T 3tkl_A 131 CDLTTKKVV--DYTTAKEFADSLG--IPFLETSAKNATNVEQSF 170 (196)
T ss_dssp TTCTTTCCS--CHHHHHHHHHHTT--CCEEEECTTTCTTHHHHH
T ss_pred ccccccccc--CHHHHHHHHHHcC--CcEEEEeCCCCCCHHHHH
Confidence 999876532 3344555555544 56766543 223444444
No 53
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.35 E-value=2.8 Score=30.30 Aligned_cols=88 Identities=18% Similarity=0.081 Sum_probs=41.4
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc-------cEEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-------DVVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A-------D~Ivln 117 (216)
...++.+.|......+..... -..+.++.|+|...-... .. ......++... =++|+|
T Consensus 50 ~~~i~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~-~~------~~~~~~~~~~~~~~~~~p~ilv~n 114 (166)
T 3q72_A 50 SLMVYDIWEQDGGRWLPGHCM--------AMGDAYVIVYSVTDKGSF-EK------ASELRVQLRRARQTDDVPIILVGN 114 (166)
T ss_dssp EEEEEECC-----------------------CCEEEEEEETTCHHHH-HH------HHHHHHHHHHCC---CCCEEEEEE
T ss_pred EEEEEECCCCccchhhhhhhh--------hhCCEEEEEEECCCHHHH-HH------HHHHHHHHHHhcCCCCCCEEEEEe
Confidence 445678888654433332211 234678899998865422 11 12233344322 267889
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+..+. ..+...+..+..+ +++++++
T Consensus 115 K~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 144 (166)
T 3q72_A 115 KSDLVRSREV--SVDEGRACAVVFD--CKFIETS 144 (166)
T ss_dssp CTTCCSSCCS--CHHHHHHHHHHTT--CEEEECB
T ss_pred cccccccccc--CHHHHHHHHHHhC--CcEEEec
Confidence 9999875432 3344444444443 6777644
No 54
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.26 E-value=1.5 Score=32.79 Aligned_cols=87 Identities=17% Similarity=0.149 Sum_probs=48.0
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc----c---EEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA----D---VVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A----D---~Ivln 117 (216)
...|+.+.|......+..... -..+.+|.|+|+......- . ...+..++... + +||+|
T Consensus 65 ~~~i~Dt~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~-~------~~~~~~~i~~~~~~~~~p~ilv~n 129 (195)
T 1x3s_A 65 KLAIWDTAGQERFRTLTPSYY--------RGAQGVILVYDVTRRDTFV-K------LDNWLNELETYCTRNDIVNMLVGN 129 (195)
T ss_dssp EEEEEEECSSGGGCCSHHHHH--------TTCCEEEEEEETTCHHHHH-T------HHHHHHHHTTCCSCSCCEEEEEEE
T ss_pred EEEEEeCCCchhhhhhhHHHh--------ccCCEEEEEEECcCHHHHH-H------HHHHHHHHHHhcCcCCCcEEEEEE
Confidence 356678888654333332221 1346789999998754321 1 22233444331 2 68999
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+.+. ..++..+..+..+ +++++++
T Consensus 130 K~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~S 158 (195)
T 1x3s_A 130 KIDKENREV---DRNEGLKFARKHS--MLFIEAS 158 (195)
T ss_dssp CTTSSSCCS---CHHHHHHHHHHTT--CEEEECC
T ss_pred CCcCccccc---CHHHHHHHHHHcC--CEEEEec
Confidence 999955331 2455556655543 5676644
No 55
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=90.26 E-value=0.8 Score=40.15 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=51.7
Q ss_pred CCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccch--HHHHhhcccCCChhHHHHHHhhcc-EEEEccC
Q 027979 43 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL--LFQIDKYRHLSSYPEAIHQIAFAD-VVILNKV 119 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~--~~~l~~~~~~~~~~~~~~QI~~AD-~IvlnK~ 119 (216)
...+.|+.|.|..+-...... ..-..+.+|.|+|+..- .....-......+-....++.... +|++||+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~--------~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~ 154 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMIT--------GASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKM 154 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHH--------TSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECG
T ss_pred CeEEEEEECCCcHHHHHHHHh--------hhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 456899999998765433222 12356789999999862 111000000000001122333333 4779999
Q ss_pred CCCCCCCc----cchHHHHHHHHHhhC--C-CCEEEEee
Q 027979 120 DLVSPERS----GDSLDELEKEIHEIN--S-LAHVIRSV 151 (216)
Q Consensus 120 D~v~~~~~----~~~l~~i~~~l~~lN--P-~A~iv~~~ 151 (216)
|+.++... ....+++++.++.++ | .+++++++
T Consensus 155 Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iS 193 (435)
T 1jny_A 155 DLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVV 193 (435)
T ss_dssp GGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECB
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEee
Confidence 99873210 011344555555543 3 36777754
No 56
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.25 E-value=1.1 Score=33.17 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=45.7
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---cc---EEEEc
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---AD---VVILN 117 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD---~Ivln 117 (216)
....++.++|......+.. ..+ -..+.+|.|+|+.+.... .. ...+..++.. .+ +||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~-----~~~---~~~d~~i~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~piilv~n 121 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRTITT-----AYY---RGAMGIMLVYDITNEKSF-DN------IRNWIRNIEEHASADVEKMILGN 121 (183)
T ss_dssp EEEEEEEC---------CC-----TTT---TTCSEEEEEEETTCHHHH-HH------HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEEcCCCChhhhhhHH-----HHH---hcCCEEEEEEECcCHHHH-HH------HHHHHHHHHHhcCCCCCEEEEEE
Confidence 3456778888643322211 111 135778999999875421 11 1223333332 12 78889
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
|+|+.+..+. ..+++++..+..+ +++++++. .....+.++
T Consensus 122 K~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 122 KCDVNDKRQV--SKERGEKLALDYG--IKFMETSAKANINVENAF 162 (183)
T ss_dssp C--CCSCCCS--CHHHHHHHHHHHT--CEEEECCC---CCHHHHH
T ss_pred CccCCccCcC--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence 9999764321 2455666665554 56776442 123444444
No 57
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.22 E-value=0.25 Score=40.26 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=55.2
Q ss_pred CEEEEecCCCCCcHHH------HHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---ccEEE
Q 027979 45 DHILLETTGLANPAPL------ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---ADVVI 115 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i------~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD~Iv 115 (216)
...++.+.|.....+. -+.+..+ .+ ..-..+.+|.|+|+.+....+ .+..|+.. --+++
T Consensus 49 ~~~lvDtpG~~~~~~~~~~~~~~e~i~~~-~~-~~~~~d~vi~VvDas~~~~~~----------~l~~~l~~~~~pvilv 116 (256)
T 3iby_A 49 LIEITDLPGVYSLVANAEGISQDEQIAAQ-SV-IDLEYDCIINVIDACHLERHL----------YLTSQLFELGKPVVVA 116 (256)
T ss_dssp EEEEEECCCCSSCC------CHHHHHHHH-HH-HHSCCSEEEEEEEGGGHHHHH----------HHHHHHTTSCSCEEEE
T ss_pred EEEEEeCCCcccccccccCCCHHHHHHHH-HH-hhCCCCEEEEEeeCCCchhHH----------HHHHHHHHcCCCEEEE
Confidence 5689999999766531 1111100 00 012478899999999865432 13345543 44788
Q ss_pred EccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 116 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 116 lnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
+||+|+.+........+++.+.+ ++++++++. ..-.++.++
T Consensus 117 ~NK~Dl~~~~~~~~~~~~l~~~l-----g~~vi~~SA~~g~gi~el~ 158 (256)
T 3iby_A 117 LNMMDIAEHRGISIDTEKLESLL-----GCSVIPIQAHKNIGIPALQ 158 (256)
T ss_dssp EECHHHHHHTTCEECHHHHHHHH-----CSCEEECBGGGTBSHHHHH
T ss_pred EEChhcCCcCCcHHHHHHHHHHc-----CCCEEEEECCCCCCHHHHH
Confidence 99999876543222344444443 357776543 233444444
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.20 E-value=2 Score=31.98 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=51.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-cc---EEEEccC
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-AD---VVILNKV 119 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-AD---~IvlnK~ 119 (216)
....|+.+.|...-..+..... -..+.+|.|+|+.+....- . ...+..++.. .+ ++|+||+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~D~~~~~s~~-~------~~~~~~~i~~~~~~piilv~NK~ 157 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYY--------RGATCAIVVFDISNSNTLD-R------AKTWVNQLKISSNYIIILVANKI 157 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHH--------TTCSEEEEEEETTCHHHHH-H------HHHHHHHHHHHSCCEEEEEEECT
T ss_pred eEEEEEECCCcHHHHHHHHHHh--------cCCCEEEEEEECCCHHHHH-H------HHHHHHHHHhhCCCcEEEEEECC
Confidence 5678899999654333333221 1346789999998764321 1 1223344433 33 8889999
Q ss_pred CCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 120 DLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 120 D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
| ....+ ...+++++.++..+ .++++++
T Consensus 158 D-~~~~~--~~~~~~~~~~~~~~--~~~~~~S 184 (208)
T 3clv_A 158 D-KNKFQ--VDILEVQKYAQDNN--LLFIQTS 184 (208)
T ss_dssp T-CC-CC--SCHHHHHHHHHHTT--CEEEEEC
T ss_pred C-ccccc--CCHHHHHHHHHHcC--CcEEEEe
Confidence 9 33222 24577777777654 4777654
No 59
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.94 E-value=1.5 Score=32.17 Aligned_cols=88 Identities=15% Similarity=0.038 Sum_probs=47.7
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH-hhc------cEEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFA------DVVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI-~~A------D~Ivln 117 (216)
...++.+.|......+...+. -..+.++.|+|+......- . ......++ ... =+||+|
T Consensus 58 ~~~~~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~~piilv~n 122 (181)
T 2fn4_A 58 RLDILDTAGQEEFGAMREQYM--------RAGHGFLLVFAINDRQSFN-E------VGKLFTQILRVKDRDDFPVVLVGN 122 (181)
T ss_dssp EEEEEECCCTTTTSCCHHHHH--------HHCSEEEEEEETTCHHHHH-H------HHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred EEEEEECCCchhhHHHHHHHH--------hhCCEEEEEEeCCCHHHHH-H------HHHHHHHHHHhcCCCCCCEEEEEE
Confidence 456788899765544443322 1246789999998754321 1 11222233 211 278889
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+..+. ..+..+...+.. ++++++++
T Consensus 123 K~Dl~~~~~v--~~~~~~~~~~~~--~~~~~~~S 152 (181)
T 2fn4_A 123 KADLESQRQV--PRSEASAFGASH--HVAYFEAS 152 (181)
T ss_dssp CGGGGGGCCS--CHHHHHHHHHHT--TCEEEECB
T ss_pred Cccccccccc--CHHHHHHHHHHc--CCeEEEec
Confidence 9999775432 234444443333 46777654
No 60
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.91 E-value=3 Score=30.29 Aligned_cols=98 Identities=13% Similarity=0.061 Sum_probs=47.3
Q ss_pred CEEEEecCCCCCc--HHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc-------cEEE
Q 027979 45 DHILLETTGLANP--APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-------DVVI 115 (216)
Q Consensus 45 d~IiIE~sG~a~P--~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A-------D~Iv 115 (216)
...++.+.|.... ..+..... . ..+.++.|+|....... .. ...+..++... =+||
T Consensus 53 ~~~~~D~~g~~~~~~~~~~~~~~-----~---~~~~~i~v~d~~~~~s~-~~------~~~~~~~l~~~~~~~~~piilv 117 (175)
T 2nzj_A 53 TLVVVDTWEAEKLDKSWSQESCL-----Q---GGSAYVIVYSIADRGSF-ES------ASELRIQLRRTHQADHVPIILV 117 (175)
T ss_dssp EEEEECCC-------CHHHHHTT-----T---SCSEEEEEEETTCHHHH-HH------HHHHHHHHHHCC----CCEEEE
T ss_pred EEEEEecCCCCccchhhhHHhhc-----c---cCCEEEEEEECCCHHHH-HH------HHHHHHHHHHhhccCCCCEEEE
Confidence 4567788887542 22222211 1 24678999998865422 11 12233334322 2788
Q ss_pred EccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 116 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 116 lnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
+||+|+.+..+. ..++.+...+..+ .++++++. ....++.++
T Consensus 118 ~NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 118 GNKADLARCREV--SVEEGRACAVVFD--CKFIETSATLQHNVAELF 160 (175)
T ss_dssp EECTTCTTTCCS--CHHHHHHHHHHHT--SEEEECBTTTTBSHHHHH
T ss_pred EEChhhcccccc--CHHHHHHHHHHcC--CeEEEEecCCCCCHHHHH
Confidence 899999875432 2344444444443 56776543 223444444
No 61
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.88 E-value=1.4 Score=32.88 Aligned_cols=87 Identities=15% Similarity=0.058 Sum_probs=43.2
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-------ccEEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-------ADVVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-------AD~Ivln 117 (216)
+..++.+.|..+...+..... -..+.++.|+|+...... .. ...+..++.. -=+||+|
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~~p~ilv~n 134 (190)
T 3con_A 70 LLDILDTAGQEEYSAMRDQYM--------RTGEGFLCVFAINNSKSF-AD------INLYREQIKRVKDSDDVPMVLVGN 134 (190)
T ss_dssp EEEEEECCC-----------C--------TTCSEEEEEEETTCHHHH-HH------HHHHHHHHHHHHTCSCCCEEEEEE
T ss_pred EEEEEECCChHHHHHHHHHhh--------CcCCEEEEEEECcCHHHH-HH------HHHHHHHHHHHhCCCCCeEEEEEE
Confidence 366788888754443332211 124678899998765422 11 1122222221 1278889
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+... ..+++++..+..+ +++++++
T Consensus 135 K~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~S 163 (190)
T 3con_A 135 KCDLPTRTV---DTKQAHELAKSYG--IPFIETS 163 (190)
T ss_dssp CTTCSCCCS---CHHHHHHHHHHHT--CCEEECC
T ss_pred CCcCCcccC---CHHHHHHHHHHcC--CeEEEEe
Confidence 999976432 3455666666554 3566543
No 62
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.63 E-value=0.74 Score=33.47 Aligned_cols=88 Identities=13% Similarity=0.178 Sum_probs=47.8
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh-----hccEEEEccC
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-----FADVVILNKV 119 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~-----~AD~IvlnK~ 119 (216)
...++.+.|......+..... -..+.++.|+|+...... .. ......++. ..=++|+||+
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~piilv~nK~ 119 (168)
T 1z2a_A 55 RLMLWDTAGQEEFDAITKAYY--------RGAQACVLVFSTTDRESF-EA------ISSWREKVVAEVGDIPTALVQNKI 119 (168)
T ss_dssp EEEEECCTTGGGTTCCCHHHH--------TTCCEEEEEEETTCHHHH-HT------HHHHHHHHHHHHCSCCEEEEEECG
T ss_pred EEEEEcCCCcHhHHHHHHHHh--------cCCCEEEEEEECcCHHHH-HH------HHHHHHHHHHhCCCCCEEEEEECc
Confidence 456778888543332222211 135678999999875422 11 122233332 2347788999
Q ss_pred CCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 120 DLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 120 D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+.+..+. ..+++++..+..+ +++++++
T Consensus 120 Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 147 (168)
T 1z2a_A 120 DLLDDSCI--KNEEAEGLAKRLK--LRFYRTS 147 (168)
T ss_dssp GGGGGCSS--CHHHHHHHHHHHT--CEEEECB
T ss_pred ccCccccc--CHHHHHHHHHHcC--CeEEEEe
Confidence 99764321 2455555555544 4666644
No 63
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=89.60 E-value=0.43 Score=42.47 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=48.5
Q ss_pred CCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchH--------HHHhhcccCCChhHHHHHHhhc-cE
Q 027979 43 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--------FQIDKYRHLSSYPEAIHQIAFA-DV 113 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~--------~~l~~~~~~~~~~~~~~QI~~A-D~ 113 (216)
...+.|+.|.|..+=...... ..-..+.+|.|||+.... .+... +.....++..- =+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~--------~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e------~~~~~~~~~~~~iI 175 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIM--------GISQADMAILCVDCSTNAFESGFDLDGQTKE------HMLLASSLGIHNLI 175 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHH--------HHTTCSEEEEEEECCC------CCCCHHHHH------HHHHHHHTTCCCEE
T ss_pred CceEEEEECCCcHHHHHHHHH--------hhhhCCEEEEEEECCCCccccccchhhhHHH------HHHHHHHcCCCcEE
Confidence 346789999998653322221 112367899999998732 11111 11112222222 25
Q ss_pred EEEccCCCCCCCCccchHHHHHHHHHhh----C--C-CCEEEEee
Q 027979 114 VILNKVDLVSPERSGDSLDELEKEIHEI----N--S-LAHVIRSV 151 (216)
Q Consensus 114 IvlnK~D~v~~~~~~~~l~~i~~~l~~l----N--P-~A~iv~~~ 151 (216)
|++||+|+++..+ ...+++++.++.+ . + .+++++++
T Consensus 176 vviNK~Dl~~~~~--~~~~~i~~~~~~~l~~~g~~~~~~~~i~iS 218 (483)
T 3p26_A 176 IAMNKMDNVDWSQ--QRFEEIKSKLLPYLVDIGFFEDNINWVPIS 218 (483)
T ss_dssp EEEECGGGGTTCH--HHHHHHHHHHHHHHHHHTCCGGGEEEEECC
T ss_pred EEEECcCcccchH--HHHHHHHHHHHHHHHHcCCCcccceEEEEe
Confidence 6789999987432 1334444444433 2 2 56777644
No 64
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.59 E-value=1.8 Score=31.77 Aligned_cols=89 Identities=10% Similarity=0.018 Sum_probs=48.9
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-------cc--EE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-------AD--VV 114 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-------AD--~I 114 (216)
....++.+.|......+..... -..+.+|.|+|+.+.... .. ...+..++.. .- +|
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~~~~~iil 120 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKYI--------YGAQGVLLVYDITNYQSF-EN------LEDWYTVVKKVSEESETQPLVAL 120 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHHH--------TTCSEEEEEEETTCHHHH-HT------HHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEEEECCCCccccchhhHHH--------hhCCEEEEEEECCCHHHH-HH------HHHHHHHHHHHhcccCCCCeEEE
Confidence 3456788888765544443322 135678999999875432 11 1222233322 11 56
Q ss_pred EEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 115 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 115 vlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+||+|+.+..+. ..+...+..+..+ .++++++
T Consensus 121 v~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 153 (178)
T 2hxs_A 121 VGNKIDLEHMRTI--KPEKHLRFCQENG--FSSHFVS 153 (178)
T ss_dssp EEECGGGGGGCSS--CHHHHHHHHHHHT--CEEEEEC
T ss_pred EEEcccccccccc--CHHHHHHHHHHcC--CcEEEEe
Confidence 7899999764321 2345555555544 5666644
No 65
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.48 E-value=1.5 Score=32.45 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=50.2
Q ss_pred EEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH----hhcc---EEEEccCC
Q 027979 48 LLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFAD---VVILNKVD 120 (216)
Q Consensus 48 iIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI----~~AD---~IvlnK~D 120 (216)
++.+.|...-..+..... -..+.+|.|+|+..-... .. ......++ ...+ ++|+||+|
T Consensus 70 i~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~------~~~~~~~~~~~~~~~~~p~ilv~nK~D 134 (183)
T 3kkq_A 70 VLDTAGQEEFSAMREQYM--------RTGDGFLIVYSVTDKASF-EH------VDRFHQLILRVKDRESFPMILVANKVD 134 (183)
T ss_dssp EEECCSCGGGCSSHHHHH--------HHCSEEEEEEETTCHHHH-HT------HHHHHHHHHHHHTSSCCCEEEEEECTT
T ss_pred EEECCCchhhHHHHHHHH--------hcCCEEEEEEECCCHHHH-HH------HHHHHHHHHHhcCCCCCcEEEEEECCC
Confidence 477777543332222211 135778999999875422 11 11122222 2222 68889999
Q ss_pred CCCCCCccchHHHHHHHHHhhCCCCEEEEeecC--CCChhhhh
Q 027979 121 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRC--QVDLSEVL 161 (216)
Q Consensus 121 ~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~~--~v~~~~l~ 161 (216)
+.+..+. ..++.++..+..+ +++++++.- ....+.++
T Consensus 135 l~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 135 LMHLRKV--TRDQGKEMATKYN--IPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp CSTTCCS--CHHHHHHHHHHHT--CCEEEEBCSSSCBSHHHHH
T ss_pred chhccCc--CHHHHHHHHHHhC--CeEEEeccCCCCCCHHHHH
Confidence 9764332 3456666666665 667765432 23444444
No 66
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.89 E-value=1.1 Score=33.75 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=49.2
Q ss_pred CCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHH--hhcccCCChhHHHHH--H--------hh
Q 027979 43 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQI--DKYRHLSSYPEAIHQ--I--------AF 110 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l--~~~~~~~~~~~~~~Q--I--------~~ 110 (216)
.....|+.+.|......+.... + -..+.+|.|+|+......- ... +..+..+ + ..
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~-----~---~~~d~ii~v~D~~~~~s~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 128 (199)
T 4bas_A 62 RVAFTVFDMGGAKKFRGLWETY-----Y---DNIDAVIFVVDSSDHLRLCVVKSE-----IQAMLKHEDIRRELPGGGRV 128 (199)
T ss_dssp TEEEEEEEECCSGGGGGGGGGG-----C---TTCSEEEEEEETTCGGGHHHHHHH-----HHHHHTSHHHHSBCTTSCBC
T ss_pred CEEEEEEECCCCHhHHHHHHHH-----H---hcCCEEEEEEECCcHHHHHHHHHH-----HHHHHhChhhhhcccccCCC
Confidence 3456788999986444333221 1 1467899999998753211 110 1111111 1 22
Q ss_pred ccEEEEccCCCCCCCCccchHHHHHHHHHh----hCCCCEEEEee
Q 027979 111 ADVVILNKVDLVSPERSGDSLDELEKEIHE----INSLAHVIRSV 151 (216)
Q Consensus 111 AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~----lNP~A~iv~~~ 151 (216)
.=+||+||+|+.+... .+++.+.+.. -...+++++++
T Consensus 129 piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 169 (199)
T 4bas_A 129 PFLFFANKMDAAGAKT----AAELVEILDLTTLMGDHPFVIFASN 169 (199)
T ss_dssp CEEEEEECTTSTTCCC----HHHHHHHHTHHHHHTTSCEEEEECB
T ss_pred CEEEEEECcCCCCCCC----HHHHHHHhcchhhccCCeeEEEEee
Confidence 3467789999987642 3445444421 12445676654
No 67
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.35 E-value=1.5 Score=31.88 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=40.7
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH-hh---c---cEEEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AF---A---DVVIL 116 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI-~~---A---D~Ivl 116 (216)
....++.+.|......+.... + -..+.+|.|+|+.+....- . ......++ .. . =+||+
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~-----~---~~~d~ii~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~~piilv~ 115 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCY-----Y---SNTDAVIYVVDSCDRDRIG-I------SKSELVAMLEEEELRKAILVVFA 115 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGG-----C---TTCSEEEEEEETTCCTTHH-H------HHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEEEEEECCCChhhhHHHHHH-----h---ccCCEEEEEEECCCHHHHH-H------HHHHHHHHHhchhhCCCEEEEEE
Confidence 345678888875433322211 1 1467899999997642110 0 11112222 21 1 27888
Q ss_pred ccCCCCCCCCccchHHHHHHHH
Q 027979 117 NKVDLVSPERSGDSLDELEKEI 138 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l 138 (216)
||+|+.+... .+++.+.+
T Consensus 116 nK~Dl~~~~~----~~~~~~~~ 133 (171)
T 1upt_A 116 NKQDMEQAMT----SSEMANSL 133 (171)
T ss_dssp ECTTSTTCCC----HHHHHHHH
T ss_pred ECCCCcCCCC----HHHHHHHh
Confidence 9999987642 35555554
No 68
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=88.32 E-value=0.6 Score=41.13 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=31.7
Q ss_pred ccEEEEccCCCCCCCCccchHHHHHHHHHhhCC---CCEEEEeec-CCCChhhhhc
Q 027979 111 ADVVILNKVDLVSPERSGDSLDELEKEIHEINS---LAHVIRSVR-CQVDLSEVLN 162 (216)
Q Consensus 111 AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP---~A~iv~~~~-~~v~~~~l~~ 162 (216)
.=+||+||+|+.+..+ ...+++.+.+++..+ .++++.++- ....+..++.
T Consensus 308 ~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 361 (456)
T 4dcu_A 308 AVVIVVNKWDAVDKDE--STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMP 361 (456)
T ss_dssp EEEEEEECGGGSCCCS--SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHH
T ss_pred CEEEEEEChhcCCCch--HHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHH
Confidence 3478899999987653 245677777776643 578886543 2334555543
No 69
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.24 E-value=1.7 Score=33.20 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=43.2
Q ss_pred CCEEEEecCCCCCcHH-HHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH-----hh---ccEE
Q 027979 44 LDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AF---ADVV 114 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~-i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI-----~~---AD~I 114 (216)
....|+.+.|...-.. +...+. -..+.+|.|+|+.++...+... ...+...+ .. -=+|
T Consensus 54 ~~~~i~Dt~G~~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~piil 120 (214)
T 2fh5_B 54 NSLTLIDLPGHESLRFQLLDRFK--------SSARAVVFVVDSAAFQREVKDV-----AEFLYQVLIDSMALKNSPSLLI 120 (214)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHG--------GGEEEEEEEEETTTHHHHHHHH-----HHHHHHHHHHHHTSTTCCEEEE
T ss_pred cEEEEEECCCChhHHHHHHHHHH--------hhCCEEEEEEECCCcCHHHHHH-----HHHHHHHHhhhhhcccCCCEEE
Confidence 4577888888754433 332221 1356789999998865433221 11111111 11 2268
Q ss_pred EEccCCCCCCCCccchHHHHHHHHH
Q 027979 115 ILNKVDLVSPERSGDSLDELEKEIH 139 (216)
Q Consensus 115 vlnK~D~v~~~~~~~~l~~i~~~l~ 139 (216)
|+||+|+.+... .+.+.+.++
T Consensus 121 v~nK~Dl~~~~~----~~~~~~~l~ 141 (214)
T 2fh5_B 121 ACNKQDIAMAKS----AKLIQQQLE 141 (214)
T ss_dssp EEECTTSTTCCC----HHHHHHHHH
T ss_pred EEECCCCCCccc----HHHHHHHHH
Confidence 889999987653 344444444
No 70
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.20 E-value=2.1 Score=30.96 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=45.1
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---c---EEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---D---VVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---D---~IvlnK 118 (216)
...++.+.|......+.... .-..+.+|.|+|+...... .. ......++... + ++++||
T Consensus 53 ~~~l~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~piilv~nK 117 (170)
T 1g16_A 53 KLQIWDTAGQERFRTITTAY--------YRGAMGIILVYDITDERTF-TN------IKQWFKTVNEHANDEAQLLLVGNK 117 (170)
T ss_dssp EEEEECCTTGGGTSCCCHHH--------HTTEEEEEEEEETTCHHHH-HT------HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCCChhhhhhHHHH--------hccCCEEEEEEECCCHHHH-HH------HHHHHHHHHHhcCCCCcEEEEEEC
Confidence 45666777754322221111 1135678999999875432 11 12233333321 2 788899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.+... ..+...+..+..+ .++++++
T Consensus 118 ~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~S 145 (170)
T 1g16_A 118 SDMETRVV---TADQGEALAKELG--IPFIESS 145 (170)
T ss_dssp TTCTTCCS---CHHHHHHHHHHHT--CCEEECB
T ss_pred ccCCcCcc---CHHHHHHHHHHcC--CeEEEEE
Confidence 99954322 2345555555554 4566544
No 71
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.11 E-value=1.7 Score=32.55 Aligned_cols=89 Identities=12% Similarity=0.127 Sum_probs=44.5
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-------ccEEEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-------ADVVIL 116 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-------AD~Ivl 116 (216)
....++.+.|...-..+..... -..+.+|.|+|+.+....- . ......++.. -=++|+
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~~piilv~ 124 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTYY--------TNTEFVIVVVDSTDRERIS-V------TREELYKMLAHEDLRKAGLLIFA 124 (187)
T ss_dssp EEEEEEECCC----CGGGHHHH--------TTCCEEEEEEETTCTTTHH-H------HHHHHHHHHTSGGGTTCEEEEEE
T ss_pred EEEEEEECCCCHhHHHHHHHHh--------cCCCEEEEEEeCCCHHHHH-H------HHHHHHHHHhchhhCCCeEEEEE
Confidence 3556778888754333322211 1357789999998642110 0 1112223221 127888
Q ss_pred ccCCCCCCCCccchHHHHHHHHHhh---CCCCEEEEee
Q 027979 117 NKVDLVSPERSGDSLDELEKEIHEI---NSLAHVIRSV 151 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l~~l---NP~A~iv~~~ 151 (216)
||+|+.+.. ..+++.+.+... ....++++++
T Consensus 125 NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~S 158 (187)
T 1zj6_A 125 NKQDVKECM----TVAEISQFLKLTSIKDHQWHIQACC 158 (187)
T ss_dssp ECTTSTTCC----CHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred ECCCCcCCC----CHHHHHHHhChhhhcCCCcEEEEcc
Confidence 999998753 245565555431 2334566543
No 72
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.75 E-value=2.2 Score=31.90 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=44.9
Q ss_pred CEEEEecCCCCCcH-HHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-------ccEEEE
Q 027979 45 DHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-------ADVVIL 116 (216)
Q Consensus 45 d~IiIE~sG~a~P~-~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-------AD~Ivl 116 (216)
...++.+.|...-. .+..... -..+.+|.|+|+.+....- . ......++.. -=+||+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~--------~~~d~iilv~D~~~~~s~~-~------~~~~~~~i~~~~~~~~~piilv~ 134 (189)
T 1z06_A 70 KIQLWDTAGQERFRKSMVQHYY--------RNVHAVVFVYDMTNMASFH-S------LPAWIEECKQHLLANDIPRILVG 134 (189)
T ss_dssp EEEEEECCCSHHHHTTTHHHHH--------TTCCEEEEEEETTCHHHHH-T------HHHHHHHHHHHCCCSCCCEEEEE
T ss_pred EEEEEECCCchhhhhhhhHHHh--------cCCCEEEEEEECcCHHHHH-H------HHHHHHHHHHhcCCCCCCEEEEE
Confidence 45677888853222 2222111 1357899999998754321 1 1122222221 126788
Q ss_pred ccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 117 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
||+|+.+..+. ..+..++..+..+ +++++++
T Consensus 135 nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~S 165 (189)
T 1z06_A 135 NKCDLRSAIQV--PTDLAQKFADTHS--MPLFETS 165 (189)
T ss_dssp ECTTCGGGCCS--CHHHHHHHHHHTT--CCEEECC
T ss_pred ECcccccccee--CHHHHHHHHHHcC--CEEEEEe
Confidence 99999765321 2344444444433 4666544
No 73
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.69 E-value=4.9 Score=29.94 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=52.1
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh--------ccEEEE
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF--------ADVVIL 116 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~--------AD~Ivl 116 (216)
...++.+.|..+...+..... -..+.+|.|+|+...... .. ......++.. -=+||+
T Consensus 57 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~~~piilv~ 121 (199)
T 2gf0_A 57 TLQITDTTGSHQFPAMQRLSI--------SKGHAFILVFSVTSKQSL-EE------LGPIYKLIVQIKGSVEDIPVMLVG 121 (199)
T ss_dssp EEEEEECCGGGSCHHHHHHHH--------HHCSEEEEEEETTCHHHH-HT------THHHHHHHHHHHSCGGGSCEEEEE
T ss_pred EEEEEeCCChHHhHHHHHHhh--------ccCCEEEEEEECcCHHHH-HH------HHHHHHHHHHHhcCCCCCCEEEEE
Confidence 456788888766555544322 124678999999864422 11 1112222221 127888
Q ss_pred ccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 117 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
||+|+.+.+. ..+...+..+..+ .++++++. .....+.++
T Consensus 122 nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 122 NKCDETQREV---DTREAQAVAQEWK--CAFMETSAKMNYNVKELF 162 (199)
T ss_dssp ECTTCSSCSS---CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHH
T ss_pred ECccCCcccc---CHHHHHHHHHHhC--CeEEEEecCCCCCHHHHH
Confidence 9999986432 2344555555544 46666442 223444444
No 74
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.65 E-value=1.1 Score=34.54 Aligned_cols=99 Identities=12% Similarity=0.116 Sum_probs=50.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-------ccEEEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-------ADVVIL 116 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-------AD~Ivl 116 (216)
....|+.+.|...-..+..... -..+.+|.|+|+......- . ...+..++.. -=+||+
T Consensus 84 ~~l~l~Dt~G~~~~~~~~~~~~--------~~~d~iilV~D~~~~~s~~-~------~~~~l~~i~~~~~~~~~piilV~ 148 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRSLTTAFF--------RDAMGFLLMFDLTSQQSFL-N------VRNWMSQLQANAYCENPDIVLIG 148 (217)
T ss_dssp EEEEEEEEESHHHHHHHHHHHH--------TTCCEEEEEEETTCHHHHH-H------HHHHHHTCCCCCTTTCCEEEEEE
T ss_pred EEEEEEECCCcHhHHhHHHHHh--------cCCCEEEEEEECcCHHHHH-H------HHHHHHHHHHhcCcCCCCEEEEE
Confidence 3456778888543222222211 1346789999998654321 1 1122223321 126888
Q ss_pred ccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 117 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
||+|+.+..+. ..+++++..+..+ +++++++. .....+.++
T Consensus 149 NK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~ 190 (217)
T 2f7s_A 149 NKADLPDQREV--NERQARELADKYG--IPYFETSAATGQNVEKAV 190 (217)
T ss_dssp ECTTCGGGCCS--CHHHHHHHHHHTT--CCEEEEBTTTTBTHHHHH
T ss_pred ECCcccccccc--CHHHHHHHHHHCC--CcEEEEECCCCCCHHHHH
Confidence 99999764321 2355555555544 46666543 223444444
No 75
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.45 E-value=1 Score=37.51 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=43.1
Q ss_pred eeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhcc---EEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEe
Q 027979 74 VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD---VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS 150 (216)
Q Consensus 74 ~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD---~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~ 150 (216)
-.++.++.|+|+.+-...... ...+..++..++ +||+||+|+.++.+. ...+++.+..+.++ .+++.+
T Consensus 78 ~naD~vliV~d~~~p~~s~~~------l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v-~~~~~~~~~~~~~g--~~~~~~ 148 (302)
T 2yv5_A 78 ANVDRVIIVETLKMPEFNNYL------LDNMLVVYEYFKVEPVIVFNKIDLLNEEEK-KELERWISIYRDAG--YDVLKV 148 (302)
T ss_dssp ESCCEEEEEECSTTTTCCHHH------HHHHHHHHHHTTCEEEEEECCGGGCCHHHH-HHHHHHHHHHHHTT--CEEEEC
T ss_pred HhcCEEEEEEECCCCCCCHHH------HHHHHHHHHhCCCCEEEEEEcccCCCcccc-HHHHHHHHHHHHCC--CeEEEE
Confidence 356788999999753211110 122233444343 788899999875310 01344555555543 467765
Q ss_pred ec-CCCChhhhhcc
Q 027979 151 VR-CQVDLSEVLNC 163 (216)
Q Consensus 151 ~~-~~v~~~~l~~~ 163 (216)
+. ....++.++..
T Consensus 149 SA~~g~gi~~L~~~ 162 (302)
T 2yv5_A 149 SAKTGEGIDELVDY 162 (302)
T ss_dssp CTTTCTTHHHHHHH
T ss_pred ECCCCCCHHHHHhh
Confidence 43 23455565544
No 76
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.39 E-value=2.6 Score=37.96 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=55.8
Q ss_pred CCCCEEEEecCCCCCcHH-HHHHhhcCcccccc---eeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEc
Q 027979 42 ERLDHILLETTGLANPAP-LASVLWLDDQLESA---VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN 117 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P~~-i~~~l~~~~~l~~~---~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~Ivln 117 (216)
.++|+|||+|.|...-.. ++..+..--..... ..-+.++.++|+..-.+.+.. . ..+.+-..-+.||+|
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~------a-k~f~~~~~itgvIlT 446 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ------A-KLFHEAVGLTGITLT 446 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH------H-HHHHHHTCCSEEEEE
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH------H-HHHHhhcCCCEEEEE
Confidence 468999999999975432 22221100000000 113457889999876544321 1 111222235789999
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeecCCCChhhhhccCCCCccc
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH 170 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~~~v~~~~l~~~~~~~~~~ 170 (216)
|.|-.... ..+...+...+ .+|.....|+ .+-++..|+...
T Consensus 447 KLD~takg------G~~lsi~~~~~--~PI~fig~Ge----~vdDL~~f~~~~ 487 (503)
T 2yhs_A 447 KLDGTAKG------GVIFSVADQFG--IPIRYIGVGE----RIEDLRPFKADD 487 (503)
T ss_dssp CGGGCSCC------THHHHHHHHHC--CCEEEEECSS----SGGGEEECCHHH
T ss_pred cCCCcccc------cHHHHHHHHHC--CCEEEEecCC----ChhhcccCCHHH
Confidence 99974332 23334444444 4566555553 223344565433
No 77
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.13 E-value=0.85 Score=37.91 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=41.6
Q ss_pred eeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhcc---EEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 75 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD---VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 75 ~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD---~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
..+.+|.|+|+......... ...+..++...+ +||+||+|+.+.. ..+++.+..+.++...++++++
T Consensus 84 ~ad~vilV~D~~~~~~s~~~------l~~~l~~~~~~~~piilv~NK~DL~~~~----~v~~~~~~~~~~~~~~~~~~~S 153 (301)
T 1u0l_A 84 NVDQVILVVTVKMPETSTYI------IDKFLVLAEKNELETVMVINKMDLYDED----DLRKVRELEEIYSGLYPIVKTS 153 (301)
T ss_dssp SCCEEEEEECSSTTCCCHHH------HHHHHHHHHHTTCEEEEEECCGGGCCHH----HHHHHHHHHHHHTTTSCEEECC
T ss_pred cCCEEEEEEeCCCCCCCHHH------HHHHHHHHHHCCCCEEEEEeHHHcCCch----hHHHHHHHHHHHhhhCcEEEEE
Confidence 46788999999753211110 122333343333 6778999998653 2233444554444325676654
Q ss_pred c-CCCChhhhhcc
Q 027979 152 R-CQVDLSEVLNC 163 (216)
Q Consensus 152 ~-~~v~~~~l~~~ 163 (216)
- .....+.++..
T Consensus 154 Aktg~gv~~lf~~ 166 (301)
T 1u0l_A 154 AKTGMGIEELKEY 166 (301)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCcCHHHHHHH
Confidence 3 23445555543
No 78
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.13 E-value=3 Score=36.78 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=51.9
Q ss_pred CCCCEEEEecCCCC----CcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEc
Q 027979 42 ERLDHILLETTGLA----NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN 117 (216)
Q Consensus 42 ~~~d~IiIE~sG~a----~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~Ivln 117 (216)
..+|+|||.|.|.. ++.-+.+ +. .+...+.-+.++.|+|+....+... ....+.+--..+.||+|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~e-l~---~i~~~~~pd~vlLVlDa~~gq~a~~-------~a~~f~~~~~~~gVIlT 246 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEE-MK---EMYDVLKPDDVILVIDASIGQKAYD-------LASRFHQASPIGSVIIT 246 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHH-HH---HHHHHHCCSEEEEEEEGGGGGGGHH-------HHHHHHHHCSSEEEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHH-HH---HHHHhhCCcceEEEEeCccchHHHH-------HHHHHhcccCCcEEEEe
Confidence 47999999999974 3332222 21 1122234578899999987542211 11112222355889999
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeecC
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC 153 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~~ 153 (216)
|.|..... ..+.+..... +.+|.....|
T Consensus 247 KlD~~a~~------G~als~~~~~--g~Pi~fig~G 274 (433)
T 3kl4_A 247 KMDGTAKG------GGALSAVVAT--GATIKFIGTG 274 (433)
T ss_dssp CGGGCSCH------HHHHHHHHHH--TCEEEEEECC
T ss_pred cccccccc------hHHHHHHHHH--CCCEEEEECC
Confidence 99986432 2233333332 4677655555
No 79
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=86.83 E-value=3 Score=31.28 Aligned_cols=65 Identities=17% Similarity=0.076 Sum_probs=36.9
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---c---EEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEE
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---D---VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 149 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---D---~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~ 149 (216)
.+.+|.|+|+...... .. ...+..++... + +||+||+|+.+..+. ..++.++..+..+ +++++
T Consensus 94 ~d~ii~v~d~~~~~s~-~~------~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~ 162 (191)
T 2a5j_A 94 AAGALLVYDITRRETF-NH------LTSWLEDARQHSSSNMVIMLIGNKSDLESRRDV--KREEGEAFAREHG--LIFME 162 (191)
T ss_dssp CSEEEEEEETTCHHHH-HT------HHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEE
T ss_pred CCEEEEEEECCCHHHH-HH------HHHHHHHHHHhcCCCCCEEEEEECcccCCcccc--CHHHHHHHHHHcC--CEEEE
Confidence 5678999999875422 11 22233344321 2 788899999764321 2345555555544 56766
Q ss_pred ee
Q 027979 150 SV 151 (216)
Q Consensus 150 ~~ 151 (216)
++
T Consensus 163 ~S 164 (191)
T 2a5j_A 163 TS 164 (191)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 80
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.82 E-value=3.8 Score=31.36 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=48.6
Q ss_pred EEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---cc---EEEEccC
Q 027979 46 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---AD---VVILNKV 119 (216)
Q Consensus 46 ~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD---~IvlnK~ 119 (216)
..++.+.|...-..+.... + -..+.+|.|+|+.+.... .. .......+.. .+ +||+||+
T Consensus 77 l~l~Dt~G~~~~~~~~~~~-----~---~~~d~~i~v~D~~~~~s~-~~------~~~~~~~i~~~~~~~~piilv~NK~ 141 (201)
T 2ew1_A 77 LQIWDTAGQERFRSITQSY-----Y---RSANALILTYDITCEESF-RC------LPEWLREIEQYASNKVITVLVGNKI 141 (201)
T ss_dssp EEEEEECCSGGGHHHHGGG-----S---TTCSEEEEEEETTCHHHH-HT------HHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEECCCcHHHHHHHHHH-----H---hcCCEEEEEEECCCHHHH-HH------HHHHHHHHHHhcCCCCCEEEEEECC
Confidence 4566788864333332211 1 135788999999865432 11 1222222321 12 5778999
Q ss_pred CCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 120 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 120 D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
|+.+..+. ..++.++..+..+ .++++++- .....+.++
T Consensus 142 Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~ 180 (201)
T 2ew1_A 142 DLAERREV--SQQRAEEFSEAQD--MYYLETSAKESDNVEKLF 180 (201)
T ss_dssp GGGGGCSS--CHHHHHHHHHHHT--CCEEECCTTTCTTHHHHH
T ss_pred CCcccccc--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence 99764321 2344444444443 56665442 223444444
No 81
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=86.76 E-value=0.88 Score=39.83 Aligned_cols=93 Identities=19% Similarity=0.163 Sum_probs=49.0
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchH-HHHhhcccCCChhHHHHHHhhcc-EEEEccCCCC
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDLV 122 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~-~~l~~~~~~~~~~~~~~QI~~AD-~IvlnK~D~v 122 (216)
.+.|+.|.|..+=...... ..-..+.+|.|+|+..-. .+... +-.+..++.... +|++||+|+.
T Consensus 105 ~~~iiDtpGh~~f~~~~~~--------~~~~aD~~ilVvDa~~g~~~qt~~------~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 105 KFIIADTPGHEQYTRNMAT--------GASTCDLAIILVDARYGVQTQTRR------HSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp EEEEEECCCSGGGHHHHHH--------HHTTCSEEEEEEETTTCSCHHHHH------HHHHHHHTTCCEEEEEEECTTTT
T ss_pred eEEEEECCChHHHHHHHHH--------HHhhCCEEEEEEECCCCCcHHHHH------HHHHHHHcCCCeEEEEEEcCcCC
Confidence 5789999997653222211 113467899999997532 11111 111223333333 5679999998
Q ss_pred CCCCc--cchHHHHHHHHHhhC---CCCEEEEee
Q 027979 123 SPERS--GDSLDELEKEIHEIN---SLAHVIRSV 151 (216)
Q Consensus 123 ~~~~~--~~~l~~i~~~l~~lN---P~A~iv~~~ 151 (216)
+.++. ....+++++.++.++ +.+++++++
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vS 204 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMS 204 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEe
Confidence 74210 001234445555565 346777654
No 82
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=86.72 E-value=2.1 Score=34.15 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=39.1
Q ss_pred CEEEEecCCCCCcHH--------HHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH-----hhc
Q 027979 45 DHILLETTGLANPAP--------LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFA 111 (216)
Q Consensus 45 d~IiIE~sG~a~P~~--------i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI-----~~A 111 (216)
...||.|.|..++.. +...++ ...-..+.+|.|+|+.++...... .-....++ ...
T Consensus 72 ~i~iiDTpG~~~~~~~~~~~~~~i~~~~~-----~~~~~~d~il~V~d~~~~~~~~~~------~~~~l~~~~~~~~~~~ 140 (260)
T 2xtp_A 72 EIVIIDTPDMFSWKDHCEALYKEVQRCYL-----LSAPGPHVLLLVTQLGRYTSQDQQ------AAQRVKEIFGEDAMGH 140 (260)
T ss_dssp EEEEEECCGGGGSSCCCHHHHHHHHHHHH-----HHTTCCSEEEEEEETTCCCHHHHH------HHHHHHHHHCGGGGGG
T ss_pred EEEEEECcCCCCCCCCHHHHHHHHHHHHH-----hcCCCCcEEEEEEeCCCCCHHHHH------HHHHHHHHhCchhhcc
Confidence 578899999876531 122111 011246789999999874322111 10112222 345
Q ss_pred cEEEEc-cCCCCCC
Q 027979 112 DVVILN-KVDLVSP 124 (216)
Q Consensus 112 D~Ivln-K~D~v~~ 124 (216)
-++++| |+|+.+.
T Consensus 141 ~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 141 TIVLFTHKEDLNGG 154 (260)
T ss_dssp EEEEEECGGGGTTC
T ss_pred EEEEEEcccccCCc
Confidence 688888 9999854
No 83
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=86.65 E-value=1.3 Score=32.92 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=45.0
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH-hh------ccEEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AF------ADVVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI-~~------AD~Ivln 117 (216)
...++.+.|..+...+... .+ -..+.+|.|+|+.+.... .. ......++ .. -=++|+|
T Consensus 63 ~~~~~Dt~G~~~~~~~~~~-----~~---~~~d~ii~v~d~~~~~s~-~~------~~~~~~~~~~~~~~~~~piilv~n 127 (186)
T 1ksh_A 63 KLNIWDVGGQKSLRSYWRN-----YF---ESTDGLIWVVDSADRQRM-QD------CQRELQSLLVEERLAGATLLIFAN 127 (186)
T ss_dssp EEEEEEECCSHHHHTTGGG-----GC---TTCSEEEEEEETTCGGGH-HH------HHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEECCCCHhHHHHHHH-----Hh---cCCCEEEEEEECcCHHHH-HH------HHHHHHHHHhChhcCCCcEEEEEe
Confidence 4567888887432222111 11 135788999998764321 11 11112222 11 2278889
Q ss_pred cCCCCCCCCccchHHHHHHHHHh--h-CCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHE--I-NSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~--l-NP~A~iv~~~ 151 (216)
|+|+.+.. ..+++.+.+.. + +...++++++
T Consensus 128 K~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 128 KQDLPGAL----SCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp CTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred CccCCCCC----CHHHHHHHhChhhccCCceEEEEee
Confidence 99998754 23555554431 1 2344566543
No 84
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.42 E-value=1.4 Score=33.93 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=24.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccc-eeeccEEEEEccc
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESA-VRLDSIITVVDAK 86 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~-~~l~~vI~vVDa~ 86 (216)
....++.+.|............ ... -..+.+|.|+|+.
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~-----~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYL-----KTRAKFVKGLIFMVDST 93 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHH-----HHHGGGEEEEEEEEETT
T ss_pred ceEEEEECCCcHHHHHHHHHHH-----HhccccCCEEEEEEECC
Confidence 3678899999976654444322 111 1246789999998
No 85
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=86.33 E-value=0.81 Score=37.15 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=54.4
Q ss_pred CCEEEEecCCCCCcHH------HHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---ccEE
Q 027979 44 LDHILLETTGLANPAP------LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---ADVV 114 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~------i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD~I 114 (216)
....++.+.|.....+ +...+.. .-..+.+|.|+|+.++...+. +..|+.. -=++
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~------~~~~d~ii~V~D~t~~~~~~~----------~~~~l~~~~~pvil 115 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLL------KGDADLVILVADSVNPEQSLY----------LLLEILEMEKKVIL 115 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHH------HSCCSEEEEEEETTSCHHHHH----------HHHHHHTTTCCEEE
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHh------hcCCCEEEEEeCCCchhhHHH----------HHHHHHhcCCCEEE
Confidence 4678899999865432 2222210 014678999999998764331 2344443 3478
Q ss_pred EEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 115 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 115 vlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
++||+|+.+........+++.+. ++ +++++++. .....+.++
T Consensus 116 v~NK~Dl~~~~~i~~~~~~l~~~---lg--~~vi~~SA~~g~gi~el~ 158 (258)
T 3a1s_A 116 AMTAIDEAKKTGMKIDRYELQKH---LG--IPVVFTSSVTGEGLEELK 158 (258)
T ss_dssp EEECHHHHHHTTCCBCHHHHHHH---HC--SCEEECCTTTCTTHHHHH
T ss_pred EEECcCCCCccchHHHHHHHHHH---cC--CCEEEEEeeCCcCHHHHH
Confidence 89999986543321123444333 33 57776553 233444444
No 86
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.06 E-value=4.1 Score=30.58 Aligned_cols=86 Identities=16% Similarity=0.097 Sum_probs=47.1
Q ss_pred EEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh----cc---EEEEcc
Q 027979 46 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF----AD---VVILNK 118 (216)
Q Consensus 46 ~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~----AD---~IvlnK 118 (216)
..++.+.|... ..+..... -..+.+|.|+|+...... .. ...+..++.. .+ +||+||
T Consensus 78 ~~l~Dt~G~~~-~~~~~~~~--------~~~d~iilv~D~~~~~s~-~~------~~~~~~~i~~~~~~~~~piilv~NK 141 (196)
T 2atv_A 78 MEILDTAGQED-TIQREGHM--------RWGEGFVLVYDITDRGSF-EE------VLPLKNILDEIKKPKNVTLILVGNK 141 (196)
T ss_dssp EEEEECCCCCC-CHHHHHHH--------HHCSEEEEEEETTCHHHH-HT------HHHHHHHHHHHHTTSCCCEEEEEEC
T ss_pred EEEEECCCCCc-ccchhhhh--------ccCCEEEEEEECcCHHHH-HH------HHHHHHHHHHhhCCCCCcEEEEEEC
Confidence 55678888876 33332221 124678999999875432 11 1122222221 12 678899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.+..+. ..++..+..+..+ +++++++
T Consensus 142 ~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~S 170 (196)
T 2atv_A 142 ADLDHSRQV--STEEGEKLATELA--CAFYECS 170 (196)
T ss_dssp GGGGGGCCS--CHHHHHHHHHHHT--SEEEECC
T ss_pred ccccccccc--CHHHHHHHHHHhC--CeEEEEC
Confidence 999764321 3355555555553 5777654
No 87
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=86.03 E-value=6 Score=29.76 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=36.5
Q ss_pred EEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc------cEEEEccC
Q 027979 46 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA------DVVILNKV 119 (216)
Q Consensus 46 ~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A------D~IvlnK~ 119 (216)
..|+.+.|...-..+..... -..+.+|.|+|+.+....- . ...+...+... =+||+||+
T Consensus 79 l~i~Dt~G~~~~~~~~~~~~--------~~~d~iilv~d~~~~~s~~-~------~~~~~~~i~~~~~~~~piilv~NK~ 143 (199)
T 2p5s_A 79 LQLWDTAGQERFRSIAKSYF--------RKADGVLLLYDVTCEKSFL-N------IREWVDMIEDAAHETVPIMLVGNKA 143 (199)
T ss_dssp EEEEECTTCTTCHHHHHHHH--------HHCSEEEEEEETTCHHHHH-T------HHHHHHHHHHHC---CCEEEEEECG
T ss_pred EEEEECCCCcchhhhHHHHH--------hhCCEEEEEEECCChHHHH-H------HHHHHHHHHHhcCCCCCEEEEEECc
Confidence 55778888766555443321 1356789999998654321 1 12223333322 26888999
Q ss_pred CCC
Q 027979 120 DLV 122 (216)
Q Consensus 120 D~v 122 (216)
|+.
T Consensus 144 Dl~ 146 (199)
T 2p5s_A 144 DIR 146 (199)
T ss_dssp GGH
T ss_pred ccc
Confidence 996
No 88
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=85.95 E-value=5.9 Score=29.90 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHH
Q 027979 28 HSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 107 (216)
Q Consensus 28 ~dl~~~L~~l~~~~~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~Q 107 (216)
..+...|.++. ..+|+|||.+.|...+.. ...+. .-+.+|.++.+.... .- ...+.++
T Consensus 63 ~~l~~~l~~l~---~~yD~viiD~~~~~~~~~-~~~l~---------~ad~viiv~~~~~~~-~~--------~~~~~~~ 120 (206)
T 4dzz_A 63 EKDVYGIRKDL---ADYDFAIVDGAGSLSVIT-SAAVM---------VSDLVIIPVTPSPLD-FS--------AAGSVVT 120 (206)
T ss_dssp HHHHHTHHHHT---TTSSEEEEECCSSSSHHH-HHHHH---------HCSEEEEEECSCTTT-HH--------HHHHHHH
T ss_pred HHHHHHHHHhc---CCCCEEEEECCCCCCHHH-HHHHH---------HCCEEEEEecCCHHH-HH--------HHHHHHH
Confidence 45555666652 359999999998764432 22221 134588888887654 21 1122334
Q ss_pred Hhhcc--------EEEEccCCCCCCCCccchHHHHHHHHHhhC
Q 027979 108 IAFAD--------VVILNKVDLVSPERSGDSLDELEKEIHEIN 142 (216)
Q Consensus 108 I~~AD--------~IvlnK~D~v~~~~~~~~l~~i~~~l~~lN 142 (216)
+.... .+|+||.+.-... .+.+++.+++..
T Consensus 121 l~~~~~~~~~~~~~vv~N~~~~~~~~-----~~~~~~~l~~~~ 158 (206)
T 4dzz_A 121 VLEAQAYSRKVEARFLITRKIEMATM-----LNVLKESIKDTG 158 (206)
T ss_dssp HHTTSCGGGCCEEEEEECSBCTTEEE-----EHHHHHHHHHHT
T ss_pred HHHHHHhCCCCcEEEEEeccCCCchH-----HHHHHHHHHHcC
Confidence 43221 7999999854332 255666666653
No 89
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=85.61 E-value=1.2 Score=38.40 Aligned_cols=94 Identities=21% Similarity=0.169 Sum_probs=48.9
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHH-HHhhcccCCChhHHHHHHhhccE-EEEccCCC
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF-QIDKYRHLSSYPEAIHQIAFADV-VILNKVDL 121 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~-~l~~~~~~~~~~~~~~QI~~AD~-IvlnK~D~ 121 (216)
..+.|+.|.|..+=...... ..-..+.+|.|+|+..... +... +-....+...-.+ +++||+|+
T Consensus 75 ~~~~iiDtpG~~~f~~~~~~--------~~~~aD~~ilVvda~~g~~~qt~~------~l~~~~~~~ip~iivviNK~Dl 140 (405)
T 2c78_A 75 RHYSHVDCPGHADYIKNMIT--------GAAQMDGAILVVSAADGPMPQTRE------HILLARQVGVPYIVVFMNKVDM 140 (405)
T ss_dssp CEEEEEECCCSGGGHHHHHH--------HHTTCSSEEEEEETTTCCCHHHHH------HHHHHHHTTCCCEEEEEECGGG
T ss_pred eEEEEEECCChHHHHHHHHH--------HHHHCCEEEEEEECCCCCcHHHHH------HHHHHHHcCCCEEEEEEECccc
Confidence 56789999998753222111 1124678999999975321 1110 0011223333334 68999999
Q ss_pred CCCCCc-cchHHHHHHHHHhhCC---CCEEEEee
Q 027979 122 VSPERS-GDSLDELEKEIHEINS---LAHVIRSV 151 (216)
Q Consensus 122 v~~~~~-~~~l~~i~~~l~~lNP---~A~iv~~~ 151 (216)
.+..+. ....+++++.++.++. ..+++.++
T Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~S 174 (405)
T 2c78_A 141 VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGS 174 (405)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECC
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccccCCCEEEcc
Confidence 853210 0011245555665542 46777643
No 90
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=85.57 E-value=2.6 Score=32.59 Aligned_cols=75 Identities=12% Similarity=0.011 Sum_probs=39.1
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc------cEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEE
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 149 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A------D~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~ 149 (216)
.+.+|.|+|+......- . ...+..++... =+||+||+|+.+..+. ..++..+..+..+ +++++
T Consensus 86 ~d~vilV~D~~~~~s~~-~------~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~ 154 (223)
T 3cpj_B 86 AVGALIVYDISKSSSYE-N------CNHWLSELRENADDNVAVGLIGNKSDLAHLRAV--PTEESKTFAQENQ--LLFTE 154 (223)
T ss_dssp CCEEEEEEC-CCHHHHH-H------HHHHHHHHHHHCC--CEEEEEECCGGGGGGCCS--CHHHHHHHHHHTT--CEEEE
T ss_pred CCEEEEEEeCCCHHHHH-H------HHHHHHHHHHhCCCCCeEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEE
Confidence 46789999998654321 1 11223333321 2677899999764322 2345555555543 57776
Q ss_pred eec-CCCChhhhh
Q 027979 150 SVR-CQVDLSEVL 161 (216)
Q Consensus 150 ~~~-~~v~~~~l~ 161 (216)
++. ....++.++
T Consensus 155 ~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 155 TSALNSENVDKAF 167 (223)
T ss_dssp CCCC-CCCHHHHH
T ss_pred EeCCCCCCHHHHH
Confidence 432 233444444
No 91
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.39 E-value=6.2 Score=28.26 Aligned_cols=90 Identities=18% Similarity=0.123 Sum_probs=45.6
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc------cEEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA------DVVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A------D~IvlnK 118 (216)
...++.+.|...-..+..... -..+.+|.|+|+.+....- . ......++... =++++||
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~piilv~nK 117 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYY--------RNAQAALVVYDVTKPQSFI-K------ARHWVKELHEQASKDIIIALVGNK 117 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHH--------TTCSEEEEEEETTCHHHHH-H------HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEECCCChhhhhhhhhhh--------ccCcEEEEEEecCChHHHH-H------HHHHHHHHHHhcCCCCcEEEEEEC
Confidence 456778888654433333221 1246789999998754321 1 11222333221 2477899
Q ss_pred CCCCCCCCc-cchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERS-GDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~-~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.+.... ....+...+..+.. ++++++++
T Consensus 118 ~Dl~~~~~~~~v~~~~~~~~~~~~--~~~~~~~S 149 (170)
T 1ek0_A 118 IDXLQEGGERKVAREEGEKLAEEK--GLLFFETS 149 (170)
T ss_dssp GGGGGSSCCCCSCHHHHHHHHHHH--TCEEEECC
T ss_pred CCccccccccCCCHHHHHHHHHHc--CCEEEEEe
Confidence 999765211 01223333443333 35666644
No 92
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=85.28 E-value=1.6 Score=37.79 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=49.5
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchH--HHHhhcccCCChhHHHHHHhhcc-EEEEccCCC
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 121 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~--~~l~~~~~~~~~~~~~~QI~~AD-~IvlnK~D~ 121 (216)
.+.|+.+.|-. ....... ...-..+.+|.|+|+.... .+...+ . ....++.... +|++||+|+
T Consensus 82 ~i~iiDtPGh~---~f~~~~~-----~~~~~~D~~ilVvda~~g~~~~qt~e~-----l-~~~~~l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 82 RVSFVDSPGHE---TLMATML-----SGASLMDGAILVIAANEPCPQPQTKEH-----L-MALEILGIDKIIIVQNKIDL 147 (408)
T ss_dssp EEEEEECSSHH---HHHHHHH-----TTCSCCSEEEEEEETTSCSSCHHHHHH-----H-HHHHHTTCCCEEEEEECTTS
T ss_pred EEEEEECCCHH---HHHHHHH-----HhHhhCCEEEEEEECCCCCCCchhHHH-----H-HHHHHcCCCeEEEEEEccCC
Confidence 46778888853 2222211 2223568899999998521 111110 1 1123333223 478899999
Q ss_pred CCCCCccchHHHHHHHHHhhC-CCCEEEEee
Q 027979 122 VSPERSGDSLDELEKEIHEIN-SLAHVIRSV 151 (216)
Q Consensus 122 v~~~~~~~~l~~i~~~l~~lN-P~A~iv~~~ 151 (216)
.+.++.....+++++.++... ..+++++++
T Consensus 148 ~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vS 178 (408)
T 1s0u_A 148 VDEKQAEENYEQIKEFVKGTIAENAPIIPIS 178 (408)
T ss_dssp SCTTTTTTHHHHHHHHHTTSTTTTCCEEEC-
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCeEEEee
Confidence 886532124566666666532 356777643
No 93
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=85.17 E-value=2.5 Score=33.31 Aligned_cols=90 Identities=10% Similarity=0.157 Sum_probs=43.1
Q ss_pred CEEEEecCCCCCcH--------HHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHH----Hhhcc
Q 027979 45 DHILLETTGLANPA--------PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFAD 112 (216)
Q Consensus 45 d~IiIE~sG~a~P~--------~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~Q----I~~AD 112 (216)
...|+-|.|+.++. .+...+. ...-..+.++.|+|+.++....... ...+.+. ...-=
T Consensus 79 ~i~liDTpG~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~v~d~~~~~~~~~~~-----l~~~~~~~~~~~~~~~ 148 (239)
T 3lxx_A 79 ELVVVDTPGIFDTEVPNAETSKEIIRCIL-----LTSPGPHALLLVVPLGRYTEEEHKA-----TEKILKMFGERARSFM 148 (239)
T ss_dssp EEEEEECCSCC-----CHHHHHHHHHHHH-----HTTTCCSEEEEEEETTCCSSHHHHH-----HHHHHHHHHHHHGGGE
T ss_pred eEEEEECCCccCCCCCHHHHHHHHHHHHH-----hcCCCCcEEEEEeeCCCCCHHHHHH-----HHHHHHHhhhhccceE
Confidence 56889999988653 2222221 1111457899999987654321110 1111111 11235
Q ss_pred EEEEccCCCCCCCCccchH----HHHHHHHHhhCCC
Q 027979 113 VVILNKVDLVSPERSGDSL----DELEKEIHEINSL 144 (216)
Q Consensus 113 ~IvlnK~D~v~~~~~~~~l----~~i~~~l~~lNP~ 144 (216)
+||+||+|+.+.......+ +.+++.++..+..
T Consensus 149 iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~ 184 (239)
T 3lxx_A 149 ILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDR 184 (239)
T ss_dssp EEEEECGGGC------------CHHHHHHHHHHSSS
T ss_pred EEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCE
Confidence 7888999998764321011 2456666666654
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=85.06 E-value=2.8 Score=31.62 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=37.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-------ccEEEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-------ADVVIL 116 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-------AD~Ivl 116 (216)
....++.+.|...-..+..... -..+.+|.|+|+...... .. ......++.. -=+||+
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~--------~~~d~iilv~D~~~~~s~-~~------~~~~l~~~~~~~~~~~~piilv~ 137 (192)
T 2b6h_A 73 ICFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSNDRERV-QE------SADELQKMLQEDELRDAVLLVFA 137 (192)
T ss_dssp EEEEEEECC-----CTTHHHHH--------HTCCEEEEEEETTCGGGH-HH------HHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEEEEEECCCCHhHHHHHHHHh--------ccCCEEEEEEECCCHHHH-HH------HHHHHHHHhcccccCCCeEEEEE
Confidence 4566788888754333322211 135678999999765321 11 1112223221 227888
Q ss_pred ccCCCCCCCCccchHHHHHHHH
Q 027979 117 NKVDLVSPERSGDSLDELEKEI 138 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l 138 (216)
||+|+.+.. ..+++.+.+
T Consensus 138 NK~Dl~~~~----~~~~i~~~~ 155 (192)
T 2b6h_A 138 NKQDMPNAM----PVSELTDKL 155 (192)
T ss_dssp ECTTSTTCC----CHHHHHHHT
T ss_pred ECCCCCCCC----CHHHHHHHh
Confidence 999997753 235555443
No 95
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=84.96 E-value=3.5 Score=31.26 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=40.4
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---cc---EEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEE
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---AD---VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 149 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD---~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~ 149 (216)
.+.+|.|+|+.+....- . ...+..++.. .+ +||+||+|+.+.... ...+..+..+..+ +++++
T Consensus 98 ~d~~i~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~ 166 (200)
T 2o52_A 98 AAGALLVYDITSRETYN-S------LAAWLTDARTLASPNIVVILCGNKKDLDPEREV--TFLEASRFAQENE--LMFLE 166 (200)
T ss_dssp CSEEEEEEETTCHHHHH-T------HHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--CEEEE
T ss_pred CCEEEEEEECcCHHHHH-H------HHHHHHHHHHhcCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcC--CEEEE
Confidence 57789999998754321 1 1223333322 12 788899999764321 2345555555443 67776
Q ss_pred eec-CCCChhhhh
Q 027979 150 SVR-CQVDLSEVL 161 (216)
Q Consensus 150 ~~~-~~v~~~~l~ 161 (216)
++. ....++.++
T Consensus 167 ~SA~~g~gi~~l~ 179 (200)
T 2o52_A 167 TSALTGENVEEAF 179 (200)
T ss_dssp ECTTTCTTHHHHH
T ss_pred EeCCCCCCHHHHH
Confidence 543 223344444
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=84.71 E-value=2.5 Score=31.40 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=39.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh----cc---EEEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF----AD---VVIL 116 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~----AD---~Ivl 116 (216)
....++.+.|......+.... + -..+.+|.|+|+.+.... .. ......++.. .+ +||+
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~-----~---~~~d~ii~v~D~~~~~s~-~~------~~~~~~~~~~~~~~~~~piilv~ 129 (181)
T 2h17_A 65 TRFLMWDIGGQESLRSSWNTY-----Y---TNTEFVIVVVDSTDRERI-SV------TREELYKMLAHEDLRKAGLLIFA 129 (181)
T ss_dssp EEEEEEEESSSGGGTCGGGGG-----G---TTCCEEEEEEETTCTTTH-HH------HHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEEEEEECCCCHhHHHHHHHH-----h---ccCCEEEEEEECCCHHHH-HH------HHHHHHHHHhChhhCCCeEEEEE
Confidence 455677888874433222111 1 134788999999864211 00 1111222221 22 6888
Q ss_pred ccCCCCCCCCccchHHHHHHHH
Q 027979 117 NKVDLVSPERSGDSLDELEKEI 138 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l 138 (216)
||+|+.+.. ..+++.+.+
T Consensus 130 NK~Dl~~~~----~~~~i~~~~ 147 (181)
T 2h17_A 130 NKQDVKECM----TVAEISQFL 147 (181)
T ss_dssp ECTTSTTCC----CHHHHHHHT
T ss_pred ECCCcccCC----CHHHHHHHh
Confidence 999997753 235555544
No 97
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=84.64 E-value=6.3 Score=28.91 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=48.8
Q ss_pred EEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-------ccEEEEcc
Q 027979 46 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-------ADVVILNK 118 (216)
Q Consensus 46 ~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-------AD~IvlnK 118 (216)
..++.+.|......+..... -..+.++.|+|+..-...- . ......++.. -=+||+||
T Consensus 54 ~~i~Dt~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~~p~i~v~nK 118 (189)
T 4dsu_A 54 LDILDTAGQEEYSAMRDQYM--------RTGEGFLCVFAINNTKSFE-D------IHHYREQIKRVKDSEDVPMVLVGNK 118 (189)
T ss_dssp EEEEECCCC---CTTHHHHH--------HHCSEEEEEEETTCHHHHH-H------HHHHHHHHHHHTTCSCCCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHH--------hcCCEEEEEEECCCHHHHH-H------HHHHHHHHHHhcCCCCCcEEEEEEC
Confidence 44678888665444443322 1256789999998653221 1 1112222222 12678899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
+|+.+... ..+.+.+..+..+ .++++++. .....+.++
T Consensus 119 ~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 119 CDLPSRTV---DTKQAQDLARSYG--IPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp TTSSSCSS---CHHHHHHHHHHHT--CCEEECCTTTCTTHHHHH
T ss_pred ccCccccc---CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence 99986543 2345555555554 45665432 223444444
No 98
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=84.61 E-value=2.4 Score=31.73 Aligned_cols=66 Identities=18% Similarity=0.104 Sum_probs=35.3
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh----c---cEEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF----A---DVVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~----A---D~Ivln 117 (216)
...++.+.|...-..+..... -..+.+|.|+|+......- . ......++.. . =+||+|
T Consensus 68 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~ii~v~D~~~~~s~~-~------~~~~~~~~~~~~~~~~~piilv~N 132 (188)
T 1zd9_A 68 TIKLWDIGGQPRFRSMWERYC--------RGVSAIVYMVDAADQEKIE-A------SKNELHNLLDKPQLQGIPVLVLGN 132 (188)
T ss_dssp EEEEEEECCSHHHHTTHHHHH--------TTCSEEEEEEETTCGGGHH-H------HHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred EEEEEECCCCHhHHHHHHHHH--------ccCCEEEEEEECCCHHHHH-H------HHHHHHHHHhCcccCCCCEEEEEE
Confidence 456788888643332222211 1356789999997643211 1 1112222211 1 268889
Q ss_pred cCCCCCCC
Q 027979 118 KVDLVSPE 125 (216)
Q Consensus 118 K~D~v~~~ 125 (216)
|+|+.+..
T Consensus 133 K~Dl~~~~ 140 (188)
T 1zd9_A 133 KRDLPGAL 140 (188)
T ss_dssp CTTSTTCC
T ss_pred CCCCccCC
Confidence 99998753
No 99
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=84.59 E-value=7.3 Score=34.14 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=43.2
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh--h--ccEEEE
Q 027979 42 ERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--F--ADVVIL 116 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P~-~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~--~--AD~Ivl 116 (216)
..+|+|||.|.|..... .+...+. .+......+.++.|+||..-.+... ..+.+. . -..||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~---~i~~~~~~d~vllVvda~~g~~~~~----------~~~~~~~~~~~i~gvVl 245 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMK---QIKEITNPDEIILVIDGTIGQQAGI----------QAKAFKEAVGEIGSIIV 245 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHH---HTTSSSCCSEEEEEEEGGGGGGHHH----------HHHHHHTTSCSCEEEEE
T ss_pred hCCCEEEEcCCCCccccHHHHHHHH---HHHHHhcCcceeEEeeccccHHHHH----------HHHHHhhcccCCeEEEE
Confidence 46899999999998653 2333321 1233345778899999976532211 112222 1 268999
Q ss_pred ccCCCCCC
Q 027979 117 NKVDLVSP 124 (216)
Q Consensus 117 nK~D~v~~ 124 (216)
||+|....
T Consensus 246 nK~D~~~~ 253 (432)
T 2v3c_C 246 TKLDGSAK 253 (432)
T ss_dssp ECSSSCST
T ss_pred eCCCCccc
Confidence 99998643
No 100
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=84.48 E-value=2.4 Score=31.98 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=40.1
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh-------hccEEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-------FADVVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~-------~AD~Ivln 117 (216)
...++.+.|......+... .+. ..+.+|.|+|+......- . ......++. .-=+++.|
T Consensus 68 ~~~i~Dt~G~~~~~~~~~~-----~~~---~~d~~i~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~~piilv~N 132 (190)
T 1m2o_B 68 KFTTFDLGGHIQARRLWKD-----YFP---EVNGIVFLVDAADPERFD-E------ARVELDALFNIAELKDVPFVILGN 132 (190)
T ss_dssp EEEEEECCCSGGGTTSGGG-----GCT---TCCEEEEEEETTCGGGHH-H------HHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred EEEEEECCCCHHHHHHHHH-----HHh---cCCEEEEEEECCChHHHH-H------HHHHHHHHHcchhhcCCCEEEEEE
Confidence 3456677776543322211 111 357889999998653211 1 111122221 11267889
Q ss_pred cCCCCCCCCccchHHHHHHHHHh
Q 027979 118 KVDLVSPERSGDSLDELEKEIHE 140 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~ 140 (216)
|+|+.+.. ..+++.+.++.
T Consensus 133 K~Dl~~~~----~~~~~~~~~~~ 151 (190)
T 1m2o_B 133 KIDAPNAV----SEAELRSALGL 151 (190)
T ss_dssp CTTSTTCC----CHHHHHHHTTC
T ss_pred CCCCcCCC----CHHHHHHHhCC
Confidence 99997632 34666665543
No 101
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=84.48 E-value=3 Score=31.69 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=30.5
Q ss_pred eeccEEEEEcccchHHHHhhcccCCChhHHHHHH-h------hccEEEEccCCCCCCCCccchHHHHHHHHHh
Q 027979 75 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-A------FADVVILNKVDLVSPERSGDSLDELEKEIHE 140 (216)
Q Consensus 75 ~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI-~------~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~ 140 (216)
..+.+|.|+|+.+....- . ......++ . .-=+++.||+|+.+.. ..+++++.++.
T Consensus 92 ~~d~~i~v~D~~~~~s~~-~------~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~ 153 (198)
T 1f6b_A 92 AINGIVFLVDCADHERLL-E------SKEELDSLMTDETIANVPILILGNKIDRPEAI----SEERLREMFGL 153 (198)
T ss_dssp GCSEEEEEEETTCGGGHH-H------HHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC----CHHHHHHHHTC
T ss_pred cCCEEEEEEECCCHHHHH-H------HHHHHHHHHhCcccCCCcEEEEEECCCccccC----CHHHHHHHhCc
Confidence 357899999997653211 1 01111111 1 1126788999997632 34666666654
No 102
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=84.24 E-value=6.4 Score=29.39 Aligned_cols=78 Identities=6% Similarity=0.049 Sum_probs=40.6
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc------c-EEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEE
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA------D-VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 148 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A------D-~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv 148 (216)
.+.++.|+|..+-...- + ...+..++... - +|+.||+|+.+........+++.+..+.++ .++++
T Consensus 86 ~~~~i~v~d~~~~~s~~-~------~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-~~~~~ 157 (184)
T 3ihw_A 86 VDAVVFVFSLEDEISFQ-T------VYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK-RCTYY 157 (184)
T ss_dssp CSEEEEEEETTCHHHHH-H------HHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT-TCEEE
T ss_pred CCEEEEEEECcCHHHHH-H------HHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcC-CCeEE
Confidence 46788999988754221 1 12233444321 1 677799999533221123455666665553 45666
Q ss_pred Eeec-CCCChhhhh
Q 027979 149 RSVR-CQVDLSEVL 161 (216)
Q Consensus 149 ~~~~-~~v~~~~l~ 161 (216)
+++. .....+.++
T Consensus 158 e~Sa~~~~gv~~lf 171 (184)
T 3ihw_A 158 ETCATYGLNVERVF 171 (184)
T ss_dssp EEBTTTTBTHHHHH
T ss_pred EecCCCCCCHHHHH
Confidence 6543 223444444
No 103
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=83.49 E-value=1.4 Score=39.20 Aligned_cols=78 Identities=14% Similarity=0.053 Sum_probs=33.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh-hccEEEEccCCCC
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FADVVILNKVDLV 122 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~-~AD~IvlnK~D~v 122 (216)
....++.|.|..++....+.+.....+...-..+.++.|+|+......-.- .....+.+++. .--++|+||+|+.
T Consensus 281 ~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~----~~~~~~l~~l~~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 281 TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDEL----TEIRELKAAHPAAKFLTVANKLDRA 356 (476)
T ss_dssp EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGH----HHHHHHHHHCTTSEEEEEEECTTSC
T ss_pred eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhh----HHHHHHHHhcCCCCEEEEEECcCCC
Confidence 457889999998876655443111112222346789999999864321000 00111223332 3457888999998
Q ss_pred CCC
Q 027979 123 SPE 125 (216)
Q Consensus 123 ~~~ 125 (216)
+..
T Consensus 357 ~~~ 359 (476)
T 3gee_A 357 ANA 359 (476)
T ss_dssp TTT
T ss_pred Ccc
Confidence 764
No 104
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.93 E-value=5.3 Score=29.80 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=36.4
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---cc---EEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEE
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---AD---VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 149 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD---~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~ 149 (216)
.+.+|.|+|+.+-... .. ...+..++.. .+ +||+||+|+.+.... ..++.+...+..+ +++++
T Consensus 96 ~d~~i~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~ 164 (191)
T 3dz8_A 96 AMGFILMYDITNEESF-NA------VQDWATQIKTYSWDNAQVILVGNKCDMEEERVV--PTEKGQLLAEQLG--FDFFE 164 (191)
T ss_dssp CCEEEEEEETTCHHHH-HT------HHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEE
T ss_pred CCEEEEEEECcCHHHH-HH------HHHHHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--CeEEE
Confidence 4678999999864322 11 2223344433 12 677899999764332 3345555555543 56766
Q ss_pred ee
Q 027979 150 SV 151 (216)
Q Consensus 150 ~~ 151 (216)
++
T Consensus 165 ~S 166 (191)
T 3dz8_A 165 AS 166 (191)
T ss_dssp CB
T ss_pred EE
Confidence 54
No 105
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=82.92 E-value=2.6 Score=37.20 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=48.5
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHH--HhhcccCCChhHHHHHHhhcc-EEEEccCC
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFAD-VVILNKVD 120 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~--l~~~~~~~~~~~~~~QI~~AD-~IvlnK~D 120 (216)
..+.|+.|.|-.+=..... ...-..+.+|.|||+..-... +........+-....++..-. +|++||+|
T Consensus 85 ~~~~iiDtPGh~~f~~~~~--------~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~D 156 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMI--------TGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD 156 (458)
T ss_dssp EEEEEEECCCCTTHHHHHH--------HSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGG
T ss_pred ceEEEEECCCcHHHHHHHH--------hhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccc
Confidence 4578999999764222211 122357889999999864311 100000000111123333322 45799999
Q ss_pred CCCCCCc--cchHHHHHHHHHhhC--C-CCEEEEee
Q 027979 121 LVSPERS--GDSLDELEKEIHEIN--S-LAHVIRSV 151 (216)
Q Consensus 121 ~v~~~~~--~~~l~~i~~~l~~lN--P-~A~iv~~~ 151 (216)
+.+..+. ....+++++.++.++ | .+++++++
T Consensus 157 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vS 192 (458)
T 1f60_A 157 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPIS 192 (458)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECC
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEee
Confidence 9842210 011233444444443 2 36777654
No 106
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=82.84 E-value=5.3 Score=29.28 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=46.7
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH----h---hccEEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----A---FADVVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI----~---~AD~Ivln 117 (216)
...++.+.|...-..+.... + -..+.++.|+|+......- . ......++ . .-=+||+|
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~-----~---~~~~~~i~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~~p~ilv~n 119 (181)
T 3t5g_A 55 HLQLVDTAGQDEYSIFPQTY-----S---IDINGYILVYSVTSIKSFE-V------IKVIHGKLLDMVGKVQIPIMLVGN 119 (181)
T ss_dssp EEEEEECCCCCTTCCCCGGG-----T---TTCSEEEEEEETTCHHHHH-H------HHHHHHHHHHHC----CCEEEEEE
T ss_pred EEEEEeCCCchhhhHHHHHH-----H---hcCCEEEEEEECCCHHHHH-H------HHHHHHHHHHhcCCCCCCEEEEEE
Confidence 34578888865332111111 1 1357889999998754221 1 11122222 1 12368889
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+.... ..++.++..+.. ++++++++
T Consensus 120 K~Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~S 149 (181)
T 3t5g_A 120 KKDLHMERVI--SYEEGKALAESW--NAAFLESS 149 (181)
T ss_dssp CTTCTTTCCS--CHHHHHHHHHHT--TCEEEECC
T ss_pred Cccchhccee--cHHHHHHHHHHh--CCcEEEEe
Confidence 9999765432 345566666655 35676644
No 107
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.72 E-value=3.4 Score=30.41 Aligned_cols=76 Identities=22% Similarity=0.204 Sum_probs=37.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-------ccEEEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-------ADVVIL 116 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-------AD~Ivl 116 (216)
....++.+.|......+... .+ -..+.++.|+|+...... .. ......++.. -=++|+
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~-----~~---~~~d~ii~v~d~~~~~s~-~~------~~~~~~~~~~~~~~~~~piilv~ 126 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRC-----YY---ADTAAVIFVVDSTDKDRM-ST------ASKELHLMLQEEELQDAALLVFA 126 (183)
T ss_dssp EEEEEEEEC----CCTTGGG-----TT---TTEEEEEEEEETTCTTTH-HH------HHHHHHHHTTSSTTSSCEEEEEE
T ss_pred EEEEEEECCCCHhHHHHHHH-----Hh---ccCCEEEEEEECCCHHHH-HH------HHHHHHHHHcChhhCCCeEEEEE
Confidence 45567888887543322211 11 245788999998754211 10 1112222221 127888
Q ss_pred ccCCCCCCCCccchHHHHHHHH
Q 027979 117 NKVDLVSPERSGDSLDELEKEI 138 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l 138 (216)
||+|+.+.. ..+++.+.+
T Consensus 127 nK~Dl~~~~----~~~~i~~~~ 144 (183)
T 1moz_A 127 NKQDQPGAL----SASEVSKEL 144 (183)
T ss_dssp ECTTSTTCC----CHHHHHHHT
T ss_pred ECCCCCCCC----CHHHHHHHh
Confidence 999997753 235555554
No 108
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=82.30 E-value=6.1 Score=29.50 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=36.7
Q ss_pred eeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-----ccEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEE
Q 027979 75 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-----ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 149 (216)
Q Consensus 75 ~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-----AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~ 149 (216)
..+.+|.|+|+........- ...+...+.. -=+||.||+|+.++.......+++.+..+.++-. .+++
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 166 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNI------STKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV-AYIE 166 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHH------HHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS-CEEE
T ss_pred CCcEEEEEEECCCHHHHHHH------HHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC-EEEE
Confidence 35788999999875432210 0112222221 2267779999976422112346666666665532 2555
Q ss_pred e
Q 027979 150 S 150 (216)
Q Consensus 150 ~ 150 (216)
+
T Consensus 167 ~ 167 (194)
T 3reg_A 167 A 167 (194)
T ss_dssp C
T ss_pred e
Confidence 4
No 109
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=81.92 E-value=6.9 Score=27.98 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=38.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-------ccEEEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-------ADVVIL 116 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-------AD~Ivl 116 (216)
....++.+.|...-..+..... -..+.++.|+|+.+....- . ......++.. -=++|+
T Consensus 44 ~~~~i~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~~piilv~ 108 (164)
T 1r8s_A 44 ISFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSNDRERVN-E------AREELMRMLAEDELRDAVLLVFA 108 (164)
T ss_dssp CEEEEEECCCCGGGHHHHHHHT--------TTCSEEEEEEETTCGGGHH-H------HHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEEEEEEcCCChhhHHHHHHHh--------ccCCEEEEEEECCCHHHHH-H------HHHHHHHHHhchhhcCCeEEEEE
Confidence 4567889999865554443321 1346789999997643211 1 1112222221 236888
Q ss_pred ccCCCCCCC
Q 027979 117 NKVDLVSPE 125 (216)
Q Consensus 117 nK~D~v~~~ 125 (216)
||+|+.+..
T Consensus 109 nK~Dl~~~~ 117 (164)
T 1r8s_A 109 NKQDLPNAM 117 (164)
T ss_dssp ECTTSTTCC
T ss_pred ECcCCcCCC
Confidence 999997753
No 110
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=81.46 E-value=2 Score=39.56 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=24.2
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccch
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL 88 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~ 88 (216)
..+.|+-|.|..+= ..... ...-..+.+|.|||+...
T Consensus 245 ~~~~iiDTPG~e~f---~~~~~-----~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 245 ANFTIVDAPGHRDF---VPNAI-----MGISQADMAILCVDCSTN 281 (611)
T ss_dssp CEEEEEECCSSSCH---HHHHT-----TTSSCCSEEEEEEECSHH
T ss_pred ceEEEEECCCCccc---HHHHH-----HHHhhcCceEEEEECCCC
Confidence 36789999998642 22211 122346889999999873
No 111
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=81.14 E-value=0.97 Score=40.16 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=33.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-ccEEEEccCCCC
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDLV 122 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-AD~IvlnK~D~v 122 (216)
....++.|.|..++....+.+.........-..+.++.|+|+..-..... .++.+++.. --++|+||+|+.
T Consensus 272 ~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~--------~~i~~~l~~~piivV~NK~Dl~ 343 (462)
T 3geh_A 272 IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD--------QEIYEQVKHRPLILVMNKIDLV 343 (462)
T ss_dssp EEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH--------HHHHHHHTTSCEEEEEECTTSS
T ss_pred EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH--------HHHHHhccCCcEEEEEECCCCC
Confidence 35678899999877665554321111222234678999999986322111 123344433 457778999998
Q ss_pred CCC
Q 027979 123 SPE 125 (216)
Q Consensus 123 ~~~ 125 (216)
+..
T Consensus 344 ~~~ 346 (462)
T 3geh_A 344 EKQ 346 (462)
T ss_dssp CGG
T ss_pred cch
Confidence 764
No 112
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.01 E-value=6.4 Score=29.69 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=34.7
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhh------ccEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEE
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF------ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 149 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~------AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~ 149 (216)
.+.+|.|+|+...... .. ...+..++.. -=+||+||+|+..... ..+...+..+..+ .++++
T Consensus 93 ~d~ii~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~ 160 (213)
T 3cph_A 93 AMGIILVYDVTDERTF-TN------IKQWFKTVNEHANDEAQLLLVGNKSDMETRVV---TADQGEALAKELG--IPFIE 160 (213)
T ss_dssp CSEEEEEEETTCHHHH-HT------HHHHHHHHHHHTTTCSEEEEEEECTTCSSCCS---CHHHHHHHHHHHT--CCEEE
T ss_pred CCEEEEEEECCCHHHH-HH------HHHHHHHHHHhcCCCCCEEEEEECCCCccccc---CHHHHHHHHHHcC--CEEEE
Confidence 5678999999865431 11 1222233322 1268889999944321 2344555555544 45666
Q ss_pred ee
Q 027979 150 SV 151 (216)
Q Consensus 150 ~~ 151 (216)
++
T Consensus 161 ~S 162 (213)
T 3cph_A 161 SS 162 (213)
T ss_dssp CB
T ss_pred Ee
Confidence 44
No 113
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=80.90 E-value=3.7 Score=31.03 Aligned_cols=88 Identities=17% Similarity=0.128 Sum_probs=46.8
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-------ccEEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-------ADVVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-------AD~Ivln 117 (216)
...++.+.|......+.... + -..+.+|.|+|+......- . ......++.. -=+||+|
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~-----~---~~~d~~i~v~d~~~~~s~~-~------~~~~~~~i~~~~~~~~~piilv~n 137 (201)
T 3oes_A 73 HLHLVDTAGQDEYSILPYSF-----I---IGVHGYVLVYSVTSLHSFQ-V------IESLYQKLHEGHGKTRVPVVLVGN 137 (201)
T ss_dssp EEEEEEECCCCTTCCCCGGG-----T---TTCCEEEEEEETTCHHHHH-H------HHHHHHHHHC-----CCCEEEEEE
T ss_pred EEEEEECCCccchHHHHHHH-----H---hcCCEEEEEEeCCCHHHHH-H------HHHHHHHHHHhcCCCCCCEEEEEE
Confidence 34677888865433222111 1 1357889999998654221 1 1122222221 2377889
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+..+. ......+..+..+ +++++++
T Consensus 138 K~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~~S 167 (201)
T 3oes_A 138 KADLSPEREV--QAVEGKKLAESWG--ATFMESS 167 (201)
T ss_dssp CTTCGGGCCS--CHHHHHHHHHHHT--CEEEECC
T ss_pred CccCcccccc--CHHHHHHHHHHhC--CeEEEEe
Confidence 9999765432 3344555555544 4676654
No 114
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=80.89 E-value=9.7 Score=28.68 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=49.5
Q ss_pred EEEEecCCCCCcHH-HHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh------c-cEEEEc
Q 027979 46 HILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF------A-DVVILN 117 (216)
Q Consensus 46 ~IiIE~sG~a~P~~-i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~------A-D~Ivln 117 (216)
..+..+.|...-.. +..... -.-+.+|.|+|...-...- . ......++.. . =++|.|
T Consensus 74 l~i~Dt~g~~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~~-~------~~~~~~~i~~~~~~~~~piilv~n 138 (195)
T 3cbq_A 74 LVVYDIWEQGDAGGWLRDHCL--------QTGDAFLIVFSVTDRRSFS-K------VPETLLRLRAGRPHHDLPVILVGN 138 (195)
T ss_dssp EEEECCCCCSGGGHHHHHHHH--------HHCSEEEEEEETTCHHHHH-T------HHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred EEEEecCCCccchhhhHHHhh--------ccCCEEEEEEECCCHHHHH-H------HHHHHHHHHHhcCCCCCCEEEEee
Confidence 34557777754332 222111 1246788899987644221 1 2223334432 1 257789
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
|+|+.+.... ..++..+..+..+ +++++++. .....+.++
T Consensus 139 K~Dl~~~~~v--~~~~~~~~a~~~~--~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 139 KSDLARSREV--SLEEGRHLAGTLS--CKHIETSAALHHNTRELF 179 (195)
T ss_dssp CTTCTTTCCS--CHHHHHHHHHHTT--CEEEEEBTTTTBSHHHHH
T ss_pred chhccccCCc--CHHHHHHHHHHhC--CEEEEEcCCCCCCHHHHH
Confidence 9999765332 3455555555543 56776543 233444444
No 115
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=80.85 E-value=8 Score=27.78 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=44.0
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-------ccEEEEc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-------ADVVILN 117 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-------AD~Ivln 117 (216)
...++.+.|........... .+ -..+.++.|+|+..-... .. ......++.. -=++|.|
T Consensus 52 ~~~i~D~~g~~~~~~~~~~~----~~---~~~d~~i~v~d~~~~~s~-~~------~~~~~~~~~~~~~~~~~p~ilv~n 117 (169)
T 3q85_A 52 TLIVYDIWEQGDAGGWLQDH----CL---QTGDAFLIVFSVTDRRSF-SK------VPETLLRLRAGRPHHDLPVILVGN 117 (169)
T ss_dssp EEEEECCCCC--------CH----HH---HHCSEEEEEEETTCHHHH-HT------HHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred EEEEEECCCccccchhhhhh----hh---ccCCEEEEEEECCChHHH-HH------HHHHHHHHHhcccCCCCCEEEEee
Confidence 44577888876543322110 01 124678999999874322 11 1222233322 1277889
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+..+. ..+...+..+..+ +++++++
T Consensus 118 K~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~S 147 (169)
T 3q85_A 118 KSDLARSREV--SLEEGRHLAGTLS--CKHIETS 147 (169)
T ss_dssp CTTCGGGCCS--CHHHHHHHHHHTT--CEEEECB
T ss_pred CcchhhcccC--CHHHHHHHHHHcC--CcEEEec
Confidence 9999754432 3455555555543 5676644
No 116
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=80.62 E-value=10 Score=27.82 Aligned_cols=89 Identities=16% Similarity=0.158 Sum_probs=47.0
Q ss_pred EEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHH---HHHH----hhc-cEEEEc
Q 027979 46 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA---IHQI----AFA-DVVILN 117 (216)
Q Consensus 46 ~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~---~~QI----~~A-D~Ivln 117 (216)
..++.+.|...-..+..... -..+.+|.|+|+..-...-.. ..+..+ ..++ ... =+||.|
T Consensus 76 ~~i~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~D~~~~~~~~~~----~s~~~l~~~l~~~~~~~~~~piilv~N 143 (198)
T 3t1o_A 76 FHLYTVPGQVFYNASRKLIL--------RGVDGIVFVADSAPNRLRANA----ESMRNMRENLAEYGLTLDDVPIVIQVN 143 (198)
T ss_dssp EEEEECCSCCSCSHHHHHHT--------TTCCEEEEEEECCGGGHHHHH----HHHHHHHHHHHHTTCCTTSSCEEEEEE
T ss_pred EEEEeCCChHHHHHHHHHHH--------hcCCEEEEEEECCcchhhHhH----HHHHHHHHHHHhhccccCCCCEEEEEE
Confidence 45778888765544444322 124678999999832111000 001112 2222 122 256779
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
|+|+.+.. ..+++++..+..+- .++++++
T Consensus 144 K~Dl~~~~----~~~~~~~~~~~~~~-~~~~~~S 172 (198)
T 3t1o_A 144 KRDLPDAL----PVEMVRAVVDPEGK-FPVLEAV 172 (198)
T ss_dssp CTTSTTCC----CHHHHHHHHCTTCC-SCEEECB
T ss_pred chhccccc----CHHHHHHHHHhcCC-ceEEEEe
Confidence 99997753 35677777665442 2555543
No 117
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=80.33 E-value=10 Score=27.01 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=45.7
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---cc---EEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---AD---VVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD---~IvlnK 118 (216)
...++.+.|...-..+..... -..+.+|.|+|+...... .. ......++.. .+ ++|.||
T Consensus 56 ~~~~~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~------~~~~~~~~~~~~~~~~~iilv~nK 120 (170)
T 1r2q_A 56 KFEIWDTAGQERYHSLAPMYY--------RGAQAAIVVYDITNEESF-AR------AKNWVKELQRQASPNIVIALSGNK 120 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHH--------TTCSEEEEEEETTCHHHH-HH------HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCCcHHhhhhhHHhc--------cCCCEEEEEEECCCHHHH-HH------HHHHHHHHHHhcCCCCcEEEEEEC
Confidence 456778888654433333221 125678999999865422 11 1122233322 23 344499
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.++... ..++..+..+.. .+++++++
T Consensus 121 ~Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~S 149 (170)
T 1r2q_A 121 ADLANKRAV--DFQEAQSYADDN--SLLFMETS 149 (170)
T ss_dssp GGGGGGCCS--CHHHHHHHHHHT--TCEEEECC
T ss_pred ccCcccccc--CHHHHHHHHHHc--CCeEEEEe
Confidence 999764321 335555555443 35666543
No 118
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=80.31 E-value=3.1 Score=34.90 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=42.2
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---c---EEEEc
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---D---VVILN 117 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---D---~Ivln 117 (216)
....|+.|.|-..-..+..... -..+.+|.|+|+........- ...+...+... + +||+|
T Consensus 209 ~~l~i~Dt~G~~~~~~~~~~~~--------~~ad~vilV~D~~~~~s~~~~------~~~~~~~~~~~~~~~~piilV~N 274 (329)
T 3o47_A 209 ISFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSNDRERVNEA------REELMRMLAEDELRDAVLLVFAN 274 (329)
T ss_dssp EEEEEEECC-----CCSHHHHH--------TTEEEEEEEEETTCSSSHHHH------HHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEEECCCCHhHHHHHHHHh--------ccCCEEEEEEECCchHHHHHH------HHHHHHHHhhhccCCCeEEEEEE
Confidence 3456778887432222221111 135678999999643211000 01111222222 2 78889
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhC---CCCEEEEee
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEIN---SLAHVIRSV 151 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lN---P~A~iv~~~ 151 (216)
|+|+.+... .+++...+.... ...++++++
T Consensus 275 K~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~vS 307 (329)
T 3o47_A 275 KQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATC 307 (329)
T ss_dssp CTTSTTCCC----HHHHHHHHTCTTCCSSCEEEEECB
T ss_pred CccCCcccC----HHHHHHHhchhhhhcCCCEEEEEE
Confidence 999987642 455655554322 234565543
No 119
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=79.78 E-value=6.5 Score=33.55 Aligned_cols=76 Identities=24% Similarity=0.316 Sum_probs=38.4
Q ss_pred CEEEEecCCC-CC-cHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---ccEEEEccC
Q 027979 45 DHILLETTGL-AN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---ADVVILNKV 119 (216)
Q Consensus 45 d~IiIE~sG~-a~-P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD~IvlnK~ 119 (216)
...++.|.|. .+ |..+++.+. ..+...-.-+.++.|+|+.+......... .......+++.. .-++|.||+
T Consensus 227 ~v~l~DT~G~i~~lp~~lve~f~--~tl~~~~~aD~il~VvD~s~~~~~~~~~~--~~~~~~L~~l~~~~~p~ilV~NK~ 302 (364)
T 2qtf_A 227 KIMLVDTVGFIRGIPPQIVDAFF--VTLSEAKYSDALILVIDSTFSENLLIETL--QSSFEILREIGVSGKPILVTLNKI 302 (364)
T ss_dssp EEEEEECCCBCSSCCGGGHHHHH--HHHHGGGGSSEEEEEEETTSCHHHHHHHH--HHHHHHHHHHTCCSCCEEEEEECG
T ss_pred EEEEEeCCCchhcCCHHHHHHHH--HHHHHHHhCCEEEEEEECCCCcchHHHHH--HHHHHHHHHhCcCCCCEEEEEECC
Confidence 3456788885 33 554444321 11122234567899999876431111000 001123344432 236778999
Q ss_pred CCCCC
Q 027979 120 DLVSP 124 (216)
Q Consensus 120 D~v~~ 124 (216)
|+.+.
T Consensus 303 Dl~~~ 307 (364)
T 2qtf_A 303 DKING 307 (364)
T ss_dssp GGCCS
T ss_pred CCCCc
Confidence 99875
No 120
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=79.73 E-value=1.8 Score=37.41 Aligned_cols=95 Identities=21% Similarity=0.137 Sum_probs=48.8
Q ss_pred CCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHH-HHhhcccCCChhHHHHHHhhcc-EEEEccCC
Q 027979 43 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF-QIDKYRHLSSYPEAIHQIAFAD-VVILNKVD 120 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~-~l~~~~~~~~~~~~~~QI~~AD-~IvlnK~D 120 (216)
...+.|+.|.|..+- ..... ...-..+.+|.|+|+..... +... +-....+...-- +|++||+|
T Consensus 65 ~~~~~iiDtpG~~~f---~~~~~-----~~~~~aD~~ilVvda~~g~~~qt~e------~l~~~~~~~vp~iivviNK~D 130 (397)
T 1d2e_A 65 ARHYAHTDCPGHADY---VKNMI-----TGTAPLDGCILVVAANDGPMPQTRE------HLLLARQIGVEHVVVYVNKAD 130 (397)
T ss_dssp SCEEEEEECSSHHHH---HHHHH-----HTSSCCSEEEEEEETTTCSCHHHHH------HHHHHHHTTCCCEEEEEECGG
T ss_pred CeEEEEEECCChHHH---HHHHH-----hhHhhCCEEEEEEECCCCCCHHHHH------HHHHHHHcCCCeEEEEEECcc
Confidence 356789999997532 11111 11235678999999986321 1100 001122222233 47899999
Q ss_pred CCCCCCc-cchHHHHHHHHHhhCC---CCEEEEee
Q 027979 121 LVSPERS-GDSLDELEKEIHEINS---LAHVIRSV 151 (216)
Q Consensus 121 ~v~~~~~-~~~l~~i~~~l~~lNP---~A~iv~~~ 151 (216)
+.+..+. ....+++++.++.++- .+++++++
T Consensus 131 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~S 165 (397)
T 1d2e_A 131 AVQDSEMVELVELEIRELLTEFGYKGEETPIIVGS 165 (397)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECC
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEee
Confidence 9863210 0011345556665542 36777644
No 121
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=79.57 E-value=5.3 Score=29.06 Aligned_cols=53 Identities=28% Similarity=0.327 Sum_probs=28.8
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---ccEEEEccCCCCCCCCccchHHHHHHHHHhh
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---ADVVILNKVDLVSPERSGDSLDELEKEIHEI 141 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~l 141 (216)
.+.+|.|+|+......- . + +...++.. -=++|+||+|+.+.. .+++...++..
T Consensus 79 ~d~~i~v~d~~~~~~~~-~------~-~~l~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~ 134 (178)
T 2lkc_A 79 TDIVILVVAADDGVMPQ-T------V-EAINHAKAANVPIIVAINKMDKPEAN-----PDRVMQELMEY 134 (178)
T ss_dssp CCEEEEEEETTCCCCHH-H------H-HHHHHHGGGSCCEEEEEETTTSSCSC-----HHHHHHHHTTT
T ss_pred CCEEEEEEECCCCCcHH-H------H-HHHHHHHhCCCCEEEEEECccCCcCC-----HHHHHHHHHhc
Confidence 46689999986521000 0 1 12233332 237888999998753 24555555443
No 122
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=79.49 E-value=1.1 Score=40.02 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=46.5
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchH-HHHhhcccCCChhHHHHHHhhccEEEEccCCCCC
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 123 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~-~~l~~~~~~~~~~~~~~QI~~AD~IvlnK~D~v~ 123 (216)
.+.++.|.|..+ ...... ...-..+.+|.|+|+.... .+... .-.+..+...--+|++||+|+.+
T Consensus 74 ~i~iiDtPGh~~---~~~~~~-----~~~~~aD~~ilVvda~~g~~~qt~e------~l~~~~~~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 74 RITLVDAPGHAD---LIRAVV-----SAADIIDLALIVVDAKEGPKTQTGE------HMLILDHFNIPIIVVITKSDNAG 139 (482)
T ss_dssp EEEECCCSSHHH---HHHHHH-----HHTTSCCEEEEEEETTTCSCHHHHH------HHHHHHHTTCCBCEEEECTTSSC
T ss_pred EEEEEECCChHH---HHHHHH-----HHHhhCCEEEEEEecCCCccHHHHH------HHHHHHHcCCCEEEEEECCCccc
Confidence 456777887642 222111 1112457889999997521 11111 01122333344489999999987
Q ss_pred CCCccchHHHHHHHHHhh--CCCCEEEEee
Q 027979 124 PERSGDSLDELEKEIHEI--NSLAHVIRSV 151 (216)
Q Consensus 124 ~~~~~~~l~~i~~~l~~l--NP~A~iv~~~ 151 (216)
++......+++++.++.. .+..++++++
T Consensus 140 ~~~~~~~~~~l~~~l~~~~~~~~~~ii~vS 169 (482)
T 1wb1_A 140 TEEIKRTEMIMKSILQSTHNLKNSSIIPIS 169 (482)
T ss_dssp HHHHHHHHHHHHHHHHHSSSGGGCCEEECC
T ss_pred chhHHHHHHHHHHHHhhhcccccceEEEEE
Confidence 532111123344444433 1246777654
No 123
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=79.43 E-value=2.3 Score=35.65 Aligned_cols=116 Identities=13% Similarity=0.174 Sum_probs=55.3
Q ss_pred CCcEEeecchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHhhcCccc--ccceeeccEEEEEcccchHHHHhhcc
Q 027979 19 NGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQL--ESAVRLDSIITVVDAKNLLFQIDKYR 96 (216)
Q Consensus 19 ~GCiCCsl~~dl~~~L~~l~~~~~~~d~IiIE~sG~a~P~~i~~~l~~~~~l--~~~~~l~~vI~vVDa~~~~~~l~~~~ 96 (216)
+|=+=|.+++-|... . ....--|+|.++..+-. -.-|.+.+-....+ ...-.+|.++.|+|+.......
T Consensus 33 ~~~~~~~~rg~~~~~--~--~~~~vGD~V~~~~~~~~-~~~i~~i~~R~~~l~R~~~anvD~v~~V~~~~~p~~~~---- 103 (307)
T 1t9h_A 33 DKVIQCRGRGIFRKN--K--ITPLVGDYVVYQAENDK-EGYLMEIKERTNELIRPPICNVDQAVLVFSAVQPSFST---- 103 (307)
T ss_dssp CEEEEEESCSSCCSC--C--CCCCBTCEEEEECCTTS-CEEEEEECCCSCEETTTTEECCCEEEEEEESTTTTCCH----
T ss_pred CcEEEEEEccccccc--C--CCCCCCeEEEEEEcCCC-ceEEEEEcchhhhhhHHHHHhCCEEEEEEeCCCCCCCH----
Confidence 455668888754310 0 00112399999865411 11121211111111 1235678889999997432111
Q ss_pred cCCChhHHHHHHh---hc---cEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEe
Q 027979 97 HLSSYPEAIHQIA---FA---DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS 150 (216)
Q Consensus 97 ~~~~~~~~~~QI~---~A---D~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~ 150 (216)
..+.+.+. .+ =+||+||+|++++.+....++.+.+..+.+. .+++.+
T Consensus 104 -----~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g--~~v~~~ 156 (307)
T 1t9h_A 104 -----ALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG--YDVYLT 156 (307)
T ss_dssp -----HHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT--CCEEEC
T ss_pred -----HHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC--CeEEEE
Confidence 11222232 12 2889999999986310001344445444443 355543
No 124
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=79.00 E-value=2 Score=37.15 Aligned_cols=93 Identities=19% Similarity=0.261 Sum_probs=47.6
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchH--HHHhhcccCCChhHHHHHHhhccE-EEEccCCC
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQIAFADV-VILNKVDL 121 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~--~~l~~~~~~~~~~~~~~QI~~AD~-IvlnK~D~ 121 (216)
.+.||.|.|-.+ ...... ...-..+.+|.|||+.... .+...+ . .+..++....+ |++||+|+
T Consensus 84 ~i~iiDtPGh~~---f~~~~~-----~~~~~~D~~ilVvda~~g~~~~qt~e~-----l-~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 84 RVSFIDAPGHEA---LMTTML-----AGASLMDGAILVIAANEPCPRPQTREH-----L-MALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEECSSHHH---HHHHHH-----HCGGGCSEEEEEEETTSCSSCHHHHHH-----H-HHHHHHTCCCEEEEEECGGG
T ss_pred EEEEEECCChHH---HHHHHH-----hhhhhCCEEEEEEECCCCCCChhHHHH-----H-HHHHHcCCCcEEEEEECccC
Confidence 467888888542 222211 1223567899999998531 111110 1 12233433344 56899999
Q ss_pred CCCCCccchHHHHHHHHHhh-CCCCEEEEee
Q 027979 122 VSPERSGDSLDELEKEIHEI-NSLAHVIRSV 151 (216)
Q Consensus 122 v~~~~~~~~l~~i~~~l~~l-NP~A~iv~~~ 151 (216)
.+.++.....+++++.++.. ...++++.++
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vS 180 (410)
T 1kk1_A 150 VDKEKALENYRQIKEFIEGTVAENAPIIPIS 180 (410)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECB
T ss_pred CCHHHHHHHHHHHHHHHHhcCcCCCeEEEee
Confidence 88542101234444544432 2356777654
No 125
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=78.44 E-value=4.9 Score=35.15 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=35.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHH--------HHhhcccCCChhHHHHHHhhc-cEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--------QIDKYRHLSSYPEAIHQIAFA-DVV 114 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~--------~l~~~~~~~~~~~~~~QI~~A-D~I 114 (216)
..+.|+-|.|-.+-..... ...-..+.+|.|||+..... +... +-....++..- =+|
T Consensus 95 ~~~~iiDTPGh~~f~~~~~--------~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e------~l~~~~~~~v~~iIv 160 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMI--------GGASQADLAVLVISARKGEFETGFEKGGQTRE------HAMLAKTAGVKHLIV 160 (439)
T ss_pred eEEEEEECCChHHHHHHHH--------hhHhhCCEEEEEEECCCCccccccCCCchHHH------HHHHHHHcCCCeEEE
Confidence 3567888888643221111 11224678999999986431 1111 11112222222 257
Q ss_pred EEccCCCCCC
Q 027979 115 ILNKVDLVSP 124 (216)
Q Consensus 115 vlnK~D~v~~ 124 (216)
++||+|+.+.
T Consensus 161 viNK~Dl~~~ 170 (439)
T 3j2k_7 161 LINKMDDPTV 170 (439)
T ss_pred EeecCCCccc
Confidence 8899999753
No 126
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=78.42 E-value=18 Score=29.83 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=49.8
Q ss_pred CCCCEEEEecCCCCC--cH-HHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh--h-ccEEE
Q 027979 42 ERLDHILLETTGLAN--PA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--F-ADVVI 115 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~--P~-~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~--~-AD~Iv 115 (216)
.++|+|||-|.|... .. .+.+.+. .+......+.++.|+|+....+.+. . .+++. . -..||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~---~i~~~~~~d~vllVvda~~g~~~~~---------~-~~~~~~~~~i~gvV 245 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMK---NIYEAIKPDEVTLVIDASIGQKAYD---------L-ASKFNQASKIGTII 245 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHH---HHHHHHCCSEEEEEEEGGGGGGHHH---------H-HHHHHHTCTTEEEE
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHH---HHHHHhcCCEEEEEeeCCchHHHHH---------H-HHHHHhhCCCCEEE
Confidence 579999999999976 32 2332111 0112235678899999975432211 1 12222 1 25689
Q ss_pred EccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeecC
Q 027979 116 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC 153 (216)
Q Consensus 116 lnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~~ 153 (216)
+||.|.... ...+.+..... +.+|.....|
T Consensus 246 lnk~D~~~~------~g~~~~~~~~~--~~pi~~i~~G 275 (297)
T 1j8m_F 246 ITKMDGTAK------GGGALSAVAAT--GATIKFIGTG 275 (297)
T ss_dssp EECGGGCTT------HHHHHHHHHTT--TCCEEEEECS
T ss_pred EeCCCCCcc------hHHHHHHHHHH--CcCEEEEeCC
Confidence 999998643 23334444433 3566554443
No 127
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=78.23 E-value=5.7 Score=35.53 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=48.4
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-----ccEEEEcc
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-----ADVVILNK 118 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-----AD~IvlnK 118 (216)
....++.+.|...-..+...+. . .-+.+|.|+|+.++.. ...+..+|.. -=+||+||
T Consensus 98 ~~~~i~Dt~G~e~~~~~~~~~l-----~---~~d~ii~V~D~s~~~~----------~~~~~~~l~~~~~~~pvilV~NK 159 (535)
T 3dpu_A 98 CLFHFWDFGGQEIMHASHQFFM-----T---RSSVYMLLLDSRTDSN----------KHYWLRHIEKYGGKSPVIVVMNK 159 (535)
T ss_dssp CEEEEECCCSCCTTTTTCHHHH-----H---SSEEEEEEECGGGGGG----------HHHHHHHHHHHSSSCCEEEEECC
T ss_pred EEEEEEECCcHHHHHHHHHHHc-----c---CCcEEEEEEeCCCchh----------HHHHHHHHHHhCCCCCEEEEEEC
Confidence 4567778888433222222111 1 2467899999987632 1223344443 23788899
Q ss_pred CCCCCCCCccchHHHHHHHHHhhCCCCEEEEee
Q 027979 119 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~ 151 (216)
+|+.+..+. ..+++++....++ +++++++
T Consensus 160 ~Dl~~~~~v--~~~~~~~~~~~~~--~~~~~vS 188 (535)
T 3dpu_A 160 IDENPSYNI--EQKKINERFPAIE--NRFHRIS 188 (535)
T ss_dssp TTTCTTCCC--CHHHHHHHCGGGT--TCEEECC
T ss_pred CCccccccc--CHHHHHHHHHhcC--CceEEEe
Confidence 999875432 3456666665554 4566543
No 128
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=78.11 E-value=9.9 Score=29.01 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=25.2
Q ss_pred eeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-----ccEEEEccCCCCCC
Q 027979 75 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-----ADVVILNKVDLVSP 124 (216)
Q Consensus 75 ~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-----AD~IvlnK~D~v~~ 124 (216)
..+.+|.|+|+.+....-.- ...+...+.. -=+||+||+|+.+.
T Consensus 105 ~~d~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 105 DASVLLLCFDVTSPNSFDNI------FNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp CEEEEEEEEETTCHHHHHHH------HHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred cCCEEEEEEECcCHHHHHHH------HHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 45778999999875432110 0112223322 12677899999875
No 129
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=77.86 E-value=7.2 Score=29.09 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=36.5
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---------ccEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCE
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---------ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 146 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---------AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~ 146 (216)
.+.+|.|+|..+-... .. ...+..++.. -=+||.||+|+.+..+. ..++..+..+.++ ++
T Consensus 92 ~~~~ilv~d~~~~~s~-~~------~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~ 160 (187)
T 3c5c_A 92 AHAFLVVYSVDSRQSF-DS------SSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQV--TKAEGVALAGRFG--CL 160 (187)
T ss_dssp CSEEEEEEETTCHHHH-HH------HHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--CE
T ss_pred CCEEEEEEECCCHHHH-HH------HHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCcc--CHHHHHHHHHHcC--Cc
Confidence 4678999998864322 11 1122222221 12677899999754321 3455666666664 56
Q ss_pred EEEeec
Q 027979 147 VIRSVR 152 (216)
Q Consensus 147 iv~~~~ 152 (216)
+++++.
T Consensus 161 ~~e~Sa 166 (187)
T 3c5c_A 161 FFEVSA 166 (187)
T ss_dssp EEECCS
T ss_pred EEEEee
Confidence 776553
No 130
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=77.83 E-value=3.6 Score=35.27 Aligned_cols=92 Identities=8% Similarity=0.026 Sum_probs=45.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhcc-EEEEc-cCC
Q 027979 43 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILN-KVD 120 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD-~Ivln-K~D 120 (216)
...+.|+-|.|-.+=...... ..-..+.+|.|||...+..+... .-.+..+...-- +|++| |+|
T Consensus 59 ~~~i~iiDtPGh~~f~~~~~~--------~~~~aD~ailVvd~~g~~~qt~e------~~~~~~~~~i~~~ivvvNNK~D 124 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLKSLIT--------ALNISDIAVLCIPPQGLDAHTGE------CIIALDLLGFKHGIIALTRSDS 124 (370)
T ss_dssp SSEEEEEECTTTTTCHHHHHH--------HHHTCSEEEEEECTTCCCHHHHH------HHHHHHHTTCCEEEEEECCGGG
T ss_pred CeEEEEEECCChHHHHHHHHH--------HHHHCCEEEEEEcCCCCcHHHHH------HHHHHHHcCCCeEEEEEEeccC
Confidence 345788999998654222111 11246778999992222222111 111123333344 78999 999
Q ss_pred CCCCCCccchHHHHHHHHHhhC-CCCEEEE
Q 027979 121 LVSPERSGDSLDELEKEIHEIN-SLAHVIR 149 (216)
Q Consensus 121 ~v~~~~~~~~l~~i~~~l~~lN-P~A~iv~ 149 (216)
+ +++......+++++.++..+ ..+++++
T Consensus 125 l-~~~~~~~~~~~i~~~l~~~~~~~~~ii~ 153 (370)
T 2elf_A 125 T-HMHAIDELKAKLKVITSGTVLQDWECIS 153 (370)
T ss_dssp S-CHHHHHHHHHHHHHHTTTSTTTTCEEEE
T ss_pred C-CHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 9 64310001133444444333 2467877
No 131
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=77.78 E-value=3.9 Score=33.39 Aligned_cols=97 Identities=24% Similarity=0.307 Sum_probs=52.9
Q ss_pred CCEEEEecCCCCCcH------HHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh---hccEE
Q 027979 44 LDHILLETTGLANPA------PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVV 114 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~------~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~---~AD~I 114 (216)
....++-+.|..... .+....... -..+.+|.|+|+.+....+ .+..|+. .--++
T Consensus 49 ~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~------~~~d~vi~V~D~t~~e~~~----------~~~~~l~~~~~p~il 112 (272)
T 3b1v_A 49 KDLEIQDLPGIYSMSPYSPEAKVARDYLLS------QRADSILNVVDATNLERNL----------YLTTQLIETGIPVTI 112 (272)
T ss_dssp TTEEEEECCCCSCSSCSSHHHHHHHHHHHT------TCCSEEEEEEEGGGHHHHH----------HHHHHHHHTCSCEEE
T ss_pred CeEEEEECCCcCccCCCChHHHHHHHHHhc------CCCCEEEEEecCCchHhHH----------HHHHHHHhcCCCEEE
Confidence 467888888876543 222221110 1467899999999875432 1234444 34478
Q ss_pred EEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 115 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 115 vlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
++||+|+..........+++.+. ++ +++++++- ....++.++
T Consensus 113 v~NK~Dl~~~~~~~~~~~~l~~~---lg--~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 113 ALNMIDVLDGQGKKINVDKLSYH---LG--VPVVATSALKQTGVDQVV 155 (272)
T ss_dssp EEECHHHHHHTTCCCCHHHHHHH---HT--SCEEECBTTTTBSHHHHH
T ss_pred EEEChhhCCcCCcHHHHHHHHHH---cC--CCEEEEEccCCCCHHHHH
Confidence 88999986532211123444433 32 56776543 234455544
No 132
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=77.69 E-value=5.1 Score=35.15 Aligned_cols=72 Identities=24% Similarity=0.226 Sum_probs=40.3
Q ss_pred CCCCEEEEecCCCCCc-HHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEccCC
Q 027979 42 ERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 120 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P-~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~IvlnK~D 120 (216)
..+|+|||.|.|.... ..++..+. .+...+..+.++.|+|+....+.+.. ...+.+.+ .-.-||+||.|
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~---~i~~~~~pd~vlLVvDa~tgq~av~~------a~~f~~~l-~i~GVIlTKlD 248 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELA---RLKEVLGPDEVLLVLDAMTGQEALSV------ARAFDEKV-GVTGLVLTKLD 248 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGTTHHHHH------HHHHHHHT-CCCEEEEESGG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHH---HhhhccCCceEEEEEeccchHHHHHH------HHHHHhcC-CceEEEEeCcC
Confidence 5799999999997643 22332221 11223356778999999754332211 00111111 13678999998
Q ss_pred CCC
Q 027979 121 LVS 123 (216)
Q Consensus 121 ~v~ 123 (216)
...
T Consensus 249 ~~~ 251 (425)
T 2ffh_A 249 GDA 251 (425)
T ss_dssp GCS
T ss_pred Ccc
Confidence 754
No 133
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=77.36 E-value=4.7 Score=30.74 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=48.9
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh------hccEEEEc
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA------FADVVILN 117 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~------~AD~Ivln 117 (216)
....++.+.|...-..+.... .-..+.+|.|+|+..-...- . ...+...+. .-=+||+|
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~piilv~n 125 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVY--------YIGASGAILFFDVTSRITCQ-N------LARWVKEFQAVVGNEAPIVVCAN 125 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHH--------HTTCSEEEEEEETTCHHHHH-T------HHHHHHHHHHHHCSSSCEEEEEE
T ss_pred EEEEEEecCCchhhchHHHHH--------hhcCCEEEEEEeCCCHHHHH-H------HHHHHHHHHHhcCCCCCEEEEEE
Confidence 456788888864332222111 11257789999998754321 1 112222222 23377889
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
|+|+.+..+. ..+...+..+. ..+++++++. ....++.++
T Consensus 126 K~Dl~~~~~~--~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 126 KIDIKNRQKI--SKKLVMEVLKG--KNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp CTTCC----C--CHHHHHHHTTT--CCCEEEEEBTTTTBTTTHHH
T ss_pred CCCCcccccc--CHHHHHHHHHH--cCCcEEEEecCCCCCHHHHH
Confidence 9999875321 22333333332 3467776543 233444444
No 134
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=77.32 E-value=3.3 Score=38.62 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=39.4
Q ss_pred CCEEEEecCCCCCcHHHH-HHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH---hhccEEEEccC
Q 027979 44 LDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKV 119 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~-~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI---~~AD~IvlnK~ 119 (216)
....||-|.|..+-.... ..+ -..+.+|.|+|+......-. .....++ ..--++++||+
T Consensus 75 ~~i~liDTPG~~df~~~~~~~l---------~~aD~~llVvDa~~g~~~~~--------~~~~~~~~~~~~p~ilviNK~ 137 (693)
T 2xex_A 75 HRVNIIDTPGHVDFTVEVERSL---------RVLDGAVTVLDAQSGVEPQT--------ETVWRQATTYGVPRIVFVNKM 137 (693)
T ss_dssp EEEEEECCCCCSSCCHHHHHHH---------HHCSEEEEEEETTTBSCHHH--------HHHHHHHHHTTCCEEEEEECT
T ss_pred eeEEEEECcCCcchHHHHHHHH---------HHCCEEEEEECCCCCCcHHH--------HHHHHHHHHcCCCEEEEEECC
Confidence 457889999998643322 222 23678999999976321110 0112233 33458899999
Q ss_pred CCCCC
Q 027979 120 DLVSP 124 (216)
Q Consensus 120 D~v~~ 124 (216)
|+.+.
T Consensus 138 Dl~~~ 142 (693)
T 2xex_A 138 DKLGA 142 (693)
T ss_dssp TSTTC
T ss_pred Ccccc
Confidence 99875
No 135
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=77.11 E-value=6.7 Score=31.85 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=35.7
Q ss_pred CCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccE----EEEcc
Q 027979 43 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV----VILNK 118 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~----IvlnK 118 (216)
.+|+|||.+.+........ .+. -..+.+|.|+.+......- ...+.++++.+.. +|+||
T Consensus 191 ~yD~VIIDtpp~~~~~d~~-~l~--------~~aD~vilVv~~~~~~~~~--------~~~~~~~l~~~~~~~~GvVlN~ 253 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTDAQ-LFS--------KFTGNVVYVVNSENNNKDE--------VKKGKELIEATGAKLLGVVLNR 253 (271)
T ss_dssp HCSEEEEECCCTTTCSHHH-HHH--------HHHCEEEEEEETTSCCHHH--------HHHHHHHHHTTTCEEEEEEEEE
T ss_pred CCCEEEEeCCCCchHHHHH-HHH--------HHCCEEEEEEeCCCCcHHH--------HHHHHHHHHhCCCCEEEEEEeC
Confidence 5899999999875332111 111 0135688888886543211 2234456654442 78899
Q ss_pred CCC
Q 027979 119 VDL 121 (216)
Q Consensus 119 ~D~ 121 (216)
.+.
T Consensus 254 ~~~ 256 (271)
T 3bfv_A 254 MPK 256 (271)
T ss_dssp ECC
T ss_pred CcC
Confidence 875
No 136
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=77.05 E-value=4.6 Score=35.46 Aligned_cols=70 Identities=20% Similarity=0.176 Sum_probs=40.6
Q ss_pred CCCCEEEEecCCCCCc-HHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh-hc--cEEEEc
Q 027979 42 ERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FA--DVVILN 117 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P-~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~-~A--D~Ivln 117 (216)
..+|+|||.|.|.... ..+...+. .+......+.++.|+|+....+.+. ..+.+. .. .-||+|
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~---~~~~~~~p~~vllVvda~~g~~~~~----------~~~~f~~~l~i~gvVln 248 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIK---QVHASINPVETLFVVDAMTGQDAAN----------TAKAFNEALPLTGVVLT 248 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHH---HHHHHSCCSEEEEEEETTBCTTHHH----------HHHHHHHHSCCCCEEEE
T ss_pred CCCCEEEEECCCcccccHHHHHHHH---HHHHhhcCcceeEEeecchhHHHHH----------HHHHHhccCCCeEEEEe
Confidence 4699999999998754 23433321 1112234567889999975432211 112221 11 458999
Q ss_pred cCCCCCC
Q 027979 118 KVDLVSP 124 (216)
Q Consensus 118 K~D~v~~ 124 (216)
|.|....
T Consensus 249 K~D~~~~ 255 (433)
T 2xxa_A 249 KVDGDAR 255 (433)
T ss_dssp CTTSSSC
T ss_pred cCCCCcc
Confidence 9998543
No 137
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=76.80 E-value=1.2 Score=36.41 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=32.9
Q ss_pred eeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEccCCCCCCCCccchHHHHHHHHHhh
Q 027979 75 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI 141 (216)
Q Consensus 75 ~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~l 141 (216)
..|.++.|+||......... ... +. ..-=++|+||+|+++.+ ..++..+..++.
T Consensus 21 ~~D~vl~VvDar~P~~~~~~-----~l~-ll---~k~~iivlNK~DL~~~~----~~~~~~~~~~~~ 74 (262)
T 3cnl_A 21 LVNTVVEVRDARAPFATSAY-----GVD-FS---RKETIILLNKVDIADEK----TTKKWVEFFKKQ 74 (262)
T ss_dssp TCSEEEEEEETTSTTTTSCT-----TSC-CT---TSEEEEEEECGGGSCHH----HHHHHHHHHHHT
T ss_pred hCCEEEEEeeCCCCCcCcCh-----HHH-hc---CCCcEEEEECccCCCHH----HHHHHHHHHHHc
Confidence 56789999999755432110 011 11 44458999999999863 344555555554
No 138
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=76.42 E-value=4.2 Score=37.89 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=46.1
Q ss_pred CCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHH---HhhccEEEEccC
Q 027979 43 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 119 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~Q---I~~AD~IvlnK~ 119 (216)
.....||-|.|..+=....... .-..+.+|.|+|+......-. .....+ ....-++++||+
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~--------l~~aD~~ilVvDa~~g~~~~t--------~~~~~~~~~~~~p~ivviNKi 139 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERS--------MRVLDGAIVVFDSSQGVEPQS--------ETVWRQAEKYKVPRIAFANKM 139 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHH--------HHHCSEEEEEEETTTCSCHHH--------HHHHHHHHHTTCCEEEEEECT
T ss_pred CeEEEEEECcCccchHHHHHHH--------HHHCCEEEEEEECCCCcchhh--------HHHHHHHHHcCCCEEEEEECC
Confidence 3567899999997643333211 123678999999986321110 011222 234568899999
Q ss_pred CCCCCCCccchHHHHHHHHHhh
Q 027979 120 DLVSPERSGDSLDELEKEIHEI 141 (216)
Q Consensus 120 D~v~~~~~~~~l~~i~~~l~~l 141 (216)
|+...+ ..++.+.+++.
T Consensus 140 D~~~~~-----~~~~~~~l~~~ 156 (691)
T 1dar_A 140 DKTGAD-----LWLVIRTMQER 156 (691)
T ss_dssp TSTTCC-----HHHHHHHHHHT
T ss_pred CcccCC-----HHHHHHHHHHH
Confidence 998753 45555555543
No 139
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=76.29 E-value=20 Score=26.48 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=34.6
Q ss_pred EEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc--c---EEEEccCC
Q 027979 46 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA--D---VVILNKVD 120 (216)
Q Consensus 46 ~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A--D---~IvlnK~D 120 (216)
..++.+.|...-..+.... + -..+.+|.|+|+.+....-.- ...+..++... + +||+||+|
T Consensus 68 ~~i~D~~G~~~~~~~~~~~-----~---~~~d~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~piilv~nK~D 133 (194)
T 2atx_A 68 LGLYDTAGQEDYDRLRPLS-----Y---PMTDVFLICFSVVNPASFQNV------KEEWVPELKEYAPNVPFLLIGTQID 133 (194)
T ss_dssp EEEECCCCSSSSTTTGGGG-----C---TTCSEEEEEEETTCHHHHHHH------HHTHHHHHHHHSTTCCEEEEEECTT
T ss_pred EEEEECCCCcchhHHHHHh-----c---CCCCEEEEEEECCCHHHHHHH------HHHHHHHHHHhCCCCCEEEEEEChh
Confidence 3566777765433222211 1 135778999999875432110 00122333321 2 68889999
Q ss_pred CCCC
Q 027979 121 LVSP 124 (216)
Q Consensus 121 ~v~~ 124 (216)
+.+.
T Consensus 134 l~~~ 137 (194)
T 2atx_A 134 LRDD 137 (194)
T ss_dssp STTC
T ss_pred hccc
Confidence 9764
No 140
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=76.14 E-value=12 Score=27.45 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=38.6
Q ss_pred CEEEEecCCCCCcH-------HHHHHhhcCccccc-ceeeccEEEEEcccchHHHHhhcccCCCh---hHHHHHHh---h
Q 027979 45 DHILLETTGLANPA-------PLASVLWLDDQLES-AVRLDSIITVVDAKNLLFQIDKYRHLSSY---PEAIHQIA---F 110 (216)
Q Consensus 45 d~IiIE~sG~a~P~-------~i~~~l~~~~~l~~-~~~l~~vI~vVDa~~~~~~l~~~~~~~~~---~~~~~QI~---~ 110 (216)
...++.+.|..+.. .-...++ ...+.. .-.+.-++.|+|+..+............. .++..++. .
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEI-VHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 123 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHH-HHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHH-HHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCC
Confidence 46788999965321 1111111 111111 12244678899998876432221000000 01223332 2
Q ss_pred ccEEEEccCCCCCC
Q 027979 111 ADVVILNKVDLVSP 124 (216)
Q Consensus 111 AD~IvlnK~D~v~~ 124 (216)
-=++|+||+|+.+.
T Consensus 124 piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 124 PTIVAVNKLDKIKN 137 (190)
T ss_dssp CEEEEEECGGGCSC
T ss_pred ceEEEeehHhccCc
Confidence 34788899999875
No 141
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=76.08 E-value=3.4 Score=31.35 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=33.8
Q ss_pred eeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEe
Q 027979 75 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS 150 (216)
Q Consensus 75 ~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~ 150 (216)
..+.++.++|+.......... ...+........+++.||+|+.+..+....++.+++.++........+++
T Consensus 108 ~~~~~~~v~d~~~~~~~~~~~-----~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 108 SLQGLVVLMDIRHPLKDLDQQ-----MIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp TEEEEEEEEETTSCCCHHHHH-----HHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred cccEEEEEEECCCCCchhHHH-----HHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 356788899986532111100 11111222233456789999987532100133444555444334444444
No 142
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=75.43 E-value=6 Score=36.95 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=41.0
Q ss_pred CCCEEEEecCCCCCcHHHH-HHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh---hccEEEEcc
Q 027979 43 RLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNK 118 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~~i~-~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~---~AD~IvlnK 118 (216)
.....||-|.|-.+=.... ..+ -..+.+|.|||+......- ......|+. .--++++||
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l---------~~aD~aIlVvDa~~gv~~q--------t~~~~~~~~~~~ip~ilviNK 143 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSM---------RVLDGAVMVYCAVGGVQPQ--------SETVWRQANKYKVPRIAFVNK 143 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHH---------HHCCEEEEEEeCCCCCcHH--------HHHHHHHHHHcCCCEEEEEeC
Confidence 4788999999997643322 222 2357899999998643211 011223333 334789999
Q ss_pred CCCCCCC
Q 027979 119 VDLVSPE 125 (216)
Q Consensus 119 ~D~v~~~ 125 (216)
+|+...+
T Consensus 144 iD~~~~~ 150 (704)
T 2rdo_7 144 MDRMGAN 150 (704)
T ss_pred CCccccc
Confidence 9997753
No 143
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=74.88 E-value=4 Score=35.52 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=28.3
Q ss_pred ccEEEEccCCCCCCCCccchHHHHHHHHHhhC---CCCEEEEeec-CCCChhhhh
Q 027979 111 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN---SLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 111 AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lN---P~A~iv~~~~-~~v~~~~l~ 161 (216)
.=+|++||+|+.+..+. ..+++.+.+++.. ..++++.++- .......++
T Consensus 288 ~iiiv~NK~Dl~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~ 340 (436)
T 2hjg_A 288 AVVIVVNKWDAVDKDES--TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM 340 (436)
T ss_dssp EEEEEEECGGGSCCCTT--HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred cEEEEEECccCCCcchH--HHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHH
Confidence 34788899999876532 2345555554432 4677876543 233444554
No 144
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=74.46 E-value=7.4 Score=35.01 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=39.6
Q ss_pred CCCEEEEecCCCCCcHHHH-HHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh---hccEEEEcc
Q 027979 43 RLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNK 118 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~~i~-~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~---~AD~IvlnK 118 (216)
...+.||-|.|..+-.... ..+ -..+.+|.|+|+....... ...+..++. .-=++++||
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l---------~~aD~~IlVvDa~~g~~~~--------t~~~~~~~~~~~ipiivviNK 143 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYRTL---------TAVDCCLMVIDAAKGVEDR--------TRKLMEVTRLRDTPILTFMNK 143 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGG---------GGCSEEEEEEETTTCSCHH--------HHHHHHHHTTTTCCEEEEEEC
T ss_pred CeEEEEEECCCChhHHHHHHHHH---------HHCCEEEEEEeCCccchHH--------HHHHHHHHHHcCCCEEEEEcC
Confidence 3567889999997643322 222 2467899999997632111 111223332 223789999
Q ss_pred CCCCCCC
Q 027979 119 VDLVSPE 125 (216)
Q Consensus 119 ~D~v~~~ 125 (216)
+|+.+..
T Consensus 144 ~Dl~~~~ 150 (529)
T 2h5e_A 144 LDRDIRD 150 (529)
T ss_dssp TTSCCSC
T ss_pred cCCcccc
Confidence 9998754
No 145
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=74.20 E-value=6.2 Score=31.40 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=40.2
Q ss_pred CCEEEEecCCCCCcHHHH-HHhhcC---cccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH------hhccE
Q 027979 44 LDHILLETTGLANPAPLA-SVLWLD---DQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADV 113 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~-~~l~~~---~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI------~~AD~ 113 (216)
....|+-|.|+.++..-. +.+... ......-..+.++.|+|+.++...... .-....++ ...=+
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~------~~~~l~~~~~~~~~~~~ii 143 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQ------AVRQVRDMFGEDVLKWMVI 143 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHH------HHHHHHHHHCGGGGGGEEE
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHH------HHHHHHHHhChhhhccEEE
Confidence 356889999998765443 111100 000011356789999999875322111 01112222 33446
Q ss_pred EEEccCCCCCC
Q 027979 114 VILNKVDLVSP 124 (216)
Q Consensus 114 IvlnK~D~v~~ 124 (216)
|+.||.|+.+.
T Consensus 144 lv~nK~Dl~~~ 154 (247)
T 3lxw_A 144 VFTRKEDLAGG 154 (247)
T ss_dssp EEECGGGGTTC
T ss_pred EEEchHhcCCC
Confidence 77899999764
No 146
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=74.02 E-value=3.2 Score=35.07 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=37.2
Q ss_pred CCCEEEEecCCCCC------cHHHHH---HhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc--
Q 027979 43 RLDHILLETTGLAN------PAPLAS---VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-- 111 (216)
Q Consensus 43 ~~d~IiIE~sG~a~------P~~i~~---~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A-- 111 (216)
.++.+||.|.|+.. |..+.+ .+. ...+.. .-+-+++|+|+..-. ... ..-.+.+++...
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~iiL~v~~a~~~~---~~~----~~~~i~~~~~~~~~ 198 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVTK--ENCLILAVSPANSDL---ANS----DALKVAKEVDPQGQ 198 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHH-HHHHTS--TTEEEEEEEETTSCG---GGC----HHHHHHHHHCTTCT
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHH-HHHHcC--CCeEEEEEecCCCcc---chh----HHHHHHHHhCcCCC
Confidence 46899999999976 543222 111 111111 112345667775421 110 001123333322
Q ss_pred -cEEEEccCCCCCCC
Q 027979 112 -DVVILNKVDLVSPE 125 (216)
Q Consensus 112 -D~IvlnK~D~v~~~ 125 (216)
-++|+||+|+++..
T Consensus 199 ~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 199 RTIGVITKLDLMDEG 213 (353)
T ss_dssp TEEEEEECGGGSCTT
T ss_pred ceEEEeccccccCcc
Confidence 28999999998764
No 147
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=73.84 E-value=6.6 Score=29.07 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=39.2
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH-hh------ccEEEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AF------ADVVIL 116 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI-~~------AD~Ivl 116 (216)
....++.+.|......+.. ..+ -..+.+|.|+|+.+....- . ......++ .. -=+||+
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~-----~~~---~~~d~ii~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~~piilv~ 130 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWR-----CYF---SDTDAVIYVVDSTDRDRMG-V------AKHELYALLDEDELRKSLLLIFA 130 (189)
T ss_dssp EEEEEEEECCSSSSCCCCS-----SSS---TTCCEEEEEEETTCCTTHH-H------HHHHHHHHHTCSTTTTCEEEEEE
T ss_pred EEEEEEECCCCHhHHHHHH-----HHh---hcCCEEEEEEeCCCHHHHH-H------HHHHHHHHHhhhhcCCCeEEEEE
Confidence 4556778888643322211 111 1457789999997542111 0 11112222 21 127888
Q ss_pred ccCCCCCCCCccchHHHHHHHH
Q 027979 117 NKVDLVSPERSGDSLDELEKEI 138 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l 138 (216)
||+|+.+... .+++.+.+
T Consensus 131 nK~Dl~~~~~----~~~~~~~~ 148 (189)
T 2x77_A 131 NKQDLPDAAS----EAEIAEQL 148 (189)
T ss_dssp ECTTSTTCCC----HHHHHHHT
T ss_pred ECCCCcCCCC----HHHHHHHh
Confidence 9999987642 34555544
No 148
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=73.31 E-value=3.4 Score=29.58 Aligned_cols=70 Identities=19% Similarity=0.186 Sum_probs=36.3
Q ss_pred CEEEEecCCCCCcHH----HHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEccCC
Q 027979 45 DHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 120 (216)
Q Consensus 45 d~IiIE~sG~a~P~~----i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~IvlnK~D 120 (216)
...++.+.|...... +..... . ..-..+.+|.|+|+.+-....... ......+...-=++|+||+|
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~--~---~~~~~~~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~p~ilv~nK~D 119 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVD--R---ALEDAEVVLFAVDGRAELTQADYE-----VAEYLRRKGKPVILVATKVD 119 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHH--H---HTTTCSEEEEEEESSSCCCHHHHH-----HHHHHHHHTCCEEEEEECCC
T ss_pred eEEEEECCCCCCccchHHHHHHHHH--H---HHHhCCEEEEEEECCCcccHhHHH-----HHHHHHhcCCCEEEEEECcc
Confidence 466888999876321 111110 0 011356789999998632211110 11122222333478889999
Q ss_pred CCCC
Q 027979 121 LVSP 124 (216)
Q Consensus 121 ~v~~ 124 (216)
+.+.
T Consensus 120 l~~~ 123 (161)
T 2dyk_A 120 DPKH 123 (161)
T ss_dssp SGGG
T ss_pred cccc
Confidence 9765
No 149
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=72.84 E-value=2.9 Score=35.78 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=26.1
Q ss_pred ccEEEEEcccchHHHHhhcccCCChhHHHHHHhhcc-EEEEccCCCCCCC
Q 027979 77 DSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDLVSPE 125 (216)
Q Consensus 77 ~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD-~IvlnK~D~v~~~ 125 (216)
+.++.|+|+..+...+ .+++.+.+..-. ++|+||+|+++.+
T Consensus 73 ~lil~VvD~~d~~~s~--------~~~l~~~l~~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 73 ALVVNIVDIFDFNGSF--------IPGLPRFAADNPILLVGNKADLLPRS 114 (369)
T ss_dssp CEEEEEEETTCSGGGC--------CSSHHHHCTTSCEEEEEECGGGSCTT
T ss_pred cEEEEEEECCCCCCch--------hhHHHHHhCCCCEEEEEEChhcCCCc
Confidence 4689999999876432 122333333334 4567999998764
No 150
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=72.35 E-value=3.7 Score=33.19 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=38.4
Q ss_pred CCCEEEEecCCCCC------cHHH---HHHhhcCcccccceeeccEE-EEEcccchHHHHhhcccCCChhHHHHHHhh--
Q 027979 43 RLDHILLETTGLAN------PAPL---ASVLWLDDQLESAVRLDSII-TVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-- 110 (216)
Q Consensus 43 ~~d~IiIE~sG~a~------P~~i---~~~l~~~~~l~~~~~l~~vI-~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-- 110 (216)
.++..|+.|.|+.. |..+ ...+. ...+. .-+.+| .|+|+..-..... ...+.+++..
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~il~v~d~~~~~~~~~-------~~~~~~~~~~~~ 192 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVT---KENCLILAVSPANSDLANSD-------ALKIAKEVDPQG 192 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHH-HHHHT---STTEEEEEEEESSSCGGGCH-------HHHHHHHHCTTC
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHH-HHHHc---CCCeEEEEEecCCcchhhhH-------HHHHHHHhCCCC
Confidence 37899999999975 4332 12111 11111 123344 7899875221100 0113344432
Q ss_pred -ccEEEEccCCCCCCC
Q 027979 111 -ADVVILNKVDLVSPE 125 (216)
Q Consensus 111 -AD~IvlnK~D~v~~~ 125 (216)
.-++|+||+|+.+..
T Consensus 193 ~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 193 QRTIGVITKLDLMDEG 208 (299)
T ss_dssp SSEEEEEECGGGSCTT
T ss_pred CeEEEEEEccccCCCC
Confidence 238999999998764
No 151
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=72.12 E-value=20 Score=29.84 Aligned_cols=95 Identities=17% Similarity=0.084 Sum_probs=48.5
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhhc-Ccccc--cceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh--ccEEE
Q 027979 42 ERLDHILLETTGLANPA-PLASVLWL-DDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF--ADVVI 115 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P~-~i~~~l~~-~~~l~--~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~--AD~Iv 115 (216)
..+|+|||-|.|...-. .+++.+.. ...+. .....+.++.|+|+..-.+.+.. +...-.. -.-||
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~---------~~~~~~~~~i~GvV 260 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQ---------AEEFSKVADVSGII 260 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHH---------HHHHTTTSCCCEEE
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHH---------HHHHhhcCCCcEEE
Confidence 57999999999987542 23222210 00000 01235678999999854333321 1111111 23489
Q ss_pred EccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeecC
Q 027979 116 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC 153 (216)
Q Consensus 116 lnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~~ 153 (216)
+||.|..... ..+.+.+...+ .+|.....|
T Consensus 261 ltk~d~~~~~------g~~~~~~~~~~--~Pi~~i~~G 290 (320)
T 1zu4_A 261 LTKMDSTSKG------GIGLAIKELLN--IPIKMIGVG 290 (320)
T ss_dssp EECGGGCSCT------THHHHHHHHHC--CCEEEEECS
T ss_pred EeCCCCCCch------hHHHHHHHHHC--cCEEEEeCC
Confidence 9999975432 23334444444 455444444
No 152
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=72.03 E-value=20 Score=25.87 Aligned_cols=78 Identities=6% Similarity=-0.002 Sum_probs=39.3
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---------cEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCE
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 146 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---------D~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~ 146 (216)
.+.+|.|+|+.+-... .. ...+..++... =+||.||+|+.+........+++.+..+..+ ..+
T Consensus 73 ~d~~ilv~D~~~~~s~-~~------~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-~~~ 144 (178)
T 2iwr_A 73 ADAVIFVFSLEDENSF-QA------VSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK-RCS 144 (178)
T ss_dssp CSEEEEEEETTCHHHH-HH------HHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS-SEE
T ss_pred CCEEEEEEECcCHHHH-HH------HHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc-CCe
Confidence 4678999998865432 11 12222223221 2567799999532211123455555555443 456
Q ss_pred EEEeec-CCCChhhhh
Q 027979 147 VIRSVR-CQVDLSEVL 161 (216)
Q Consensus 147 iv~~~~-~~v~~~~l~ 161 (216)
+++++. .....+.++
T Consensus 145 ~~~~Sa~~~~~i~~lf 160 (178)
T 2iwr_A 145 YYETXATYGLNVDRVF 160 (178)
T ss_dssp EEEEBTTTTBTHHHHH
T ss_pred EEEEeccccCCHHHHH
Confidence 776543 233444444
No 153
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=72.00 E-value=2.4 Score=34.77 Aligned_cols=73 Identities=15% Similarity=0.269 Sum_probs=38.0
Q ss_pred CCCEEEEecCCCCC-c-----HHH---HHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh---h
Q 027979 43 RLDHILLETTGLAN-P-----APL---ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---F 110 (216)
Q Consensus 43 ~~d~IiIE~sG~a~-P-----~~i---~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~---~ 110 (216)
.++.++|.|.|+.. | ..+ ..... ...+ -..+.+|.|+|+.+-. +.. ...-.+.+++. .
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~d~iilvvd~~~~~--~~~----~~~~~i~~~~~~~~~ 199 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMV-MAYI---KKQNAIIVAVTPANTD--LAN----SDALQLAKEVDPEGK 199 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHH-HHHH---HSTTEEEEEEEESSSC--STT----CSHHHHHHHHCSSCS
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHH-HHHH---cCCCeEEEEEEecCcc--hhh----hHHHHHHHHhCCCCC
Confidence 36899999999975 2 111 11111 0011 1345689999974321 000 00112334443 2
Q ss_pred ccEEEEccCCCCCCC
Q 027979 111 ADVVILNKVDLVSPE 125 (216)
Q Consensus 111 AD~IvlnK~D~v~~~ 125 (216)
.-++|+||+|+.+..
T Consensus 200 ~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 200 RTIGVITKLDLMDKG 214 (315)
T ss_dssp SEEEEEECTTSSCSS
T ss_pred cEEEEEcCcccCCcc
Confidence 347899999998765
No 154
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=71.97 E-value=2.9 Score=34.43 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=35.0
Q ss_pred eeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh--hccEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEE
Q 027979 74 VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 149 (216)
Q Consensus 74 ~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~--~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~ 149 (216)
-..+.++.|+||...... ....+.++- .--++++||+|+++.+ ..++..+..++.+ .+++.
T Consensus 22 ~~aDvVl~VvDAr~p~~~---------~~~~l~~~l~~kp~ilVlNK~DL~~~~----~~~~~~~~~~~~g--~~~i~ 84 (282)
T 1puj_A 22 KLIDIVYELVDARIPMSS---------RNPMIEDILKNKPRIMLLNKADKADAA----VTQQWKEHFENQG--IRSLS 84 (282)
T ss_dssp GGCSEEEEEEETTSTTTT---------SCHHHHHHCSSSCEEEEEECGGGSCHH----HHHHHHHHHHTTT--CCEEE
T ss_pred hhCCEEEEEEeCCCCCcc---------CCHHHHHHHCCCCEEEEEECcccCCHH----HHHHHHHHHHhcC--CcEEE
Confidence 356789999999754321 111223332 2348999999999853 2344445554333 34554
No 155
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=71.66 E-value=13 Score=30.53 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccE----EEEcc
Q 027979 43 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV----VILNK 118 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~----IvlnK 118 (216)
.+|+|||.+.+........ .+. -..+.+|.|+.+..... .....+.++++.+.. +|+|+
T Consensus 213 ~yD~VIIDtpp~~~~~d~~-~l~--------~~ad~vilV~~~~~~~~--------~~~~~~~~~l~~~~~~~~GvVlN~ 275 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSDAA-VVG--------RSVGTSLLVARFGLNTA--------KEVSLSMQRLEQAGVNIKGAILNG 275 (299)
T ss_dssp HCSEEEEECCCTTTCTHHH-HHG--------GGCSEEEEEEETTTSCT--------THHHHHHHHHHHTTCCCCCEEEEE
T ss_pred CCCEEEEcCCCCchhHHHH-HHH--------HHCCEEEEEEcCCCChH--------HHHHHHHHHHHhCCCCeEEEEEeC
Confidence 5899999999875422111 111 01356777777653321 012233455554442 67788
Q ss_pred CCC
Q 027979 119 VDL 121 (216)
Q Consensus 119 ~D~ 121 (216)
.+.
T Consensus 276 ~~~ 278 (299)
T 3cio_A 276 VIK 278 (299)
T ss_dssp CCC
T ss_pred Ccc
Confidence 764
No 156
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=71.32 E-value=11 Score=30.29 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=37.1
Q ss_pred CEEEEecCCCCCcH----HHHHHhhcCcccccceeeccEEEEEccc--chHHHHhhcccCCChhHHHHHHh--------h
Q 027979 45 DHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAK--NLLFQIDKYRHLSSYPEAIHQIA--------F 110 (216)
Q Consensus 45 d~IiIE~sG~a~P~----~i~~~l~~~~~l~~~~~l~~vI~vVDa~--~~~~~l~~~~~~~~~~~~~~QI~--------~ 110 (216)
...|+-|.|..+.. ...+.+. ..+ ..-..+.++.|+|.. ++...- ..+.+++. .
T Consensus 88 ~l~iiDTpG~~~~~~~~~~~~~~i~--~~~-~~~~~d~il~v~~~d~~~~~~~~---------~~~~~~l~~~~~~~~~~ 155 (270)
T 1h65_A 88 TLNIIDTPGLIEGGYINDMALNIIK--SFL-LDKTIDVLLYVDRLDAYRVDNLD---------KLVAKAITDSFGKGIWN 155 (270)
T ss_dssp EEEEEECCCSEETTEECHHHHHHHH--HHT-TTCEECEEEEEEESSCCCCCHHH---------HHHHHHHHHHHCGGGGG
T ss_pred EEEEEECCCCCCCccchHHHHHHHH--HHh-hcCCCCEEEEEEeCCCCcCCHHH---------HHHHHHHHHHhCccccc
Confidence 57889999987653 2222221 000 112578889996654 332110 11223332 1
Q ss_pred ccEEEEccCCCCCCC
Q 027979 111 ADVVILNKVDLVSPE 125 (216)
Q Consensus 111 AD~IvlnK~D~v~~~ 125 (216)
-=++|+||+|+.+++
T Consensus 156 ~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 156 KAIVALTHAQFSPPD 170 (270)
T ss_dssp GEEEEEECCSCCCGG
T ss_pred CEEEEEECcccCCcC
Confidence 237888999998764
No 157
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=71.15 E-value=5.5 Score=30.85 Aligned_cols=79 Identities=10% Similarity=0.042 Sum_probs=39.1
Q ss_pred ccEEEEEcccchHHHH-hhcccCCChhHHHHHHhh-----ccEEEEccCCCCCCCCccch-HHHHHHHHHhhCCCCEEEE
Q 027979 77 DSIITVVDAKNLLFQI-DKYRHLSSYPEAIHQIAF-----ADVVILNKVDLVSPERSGDS-LDELEKEIHEINSLAHVIR 149 (216)
Q Consensus 77 ~~vI~vVDa~~~~~~l-~~~~~~~~~~~~~~QI~~-----AD~IvlnK~D~v~~~~~~~~-l~~i~~~l~~lNP~A~iv~ 149 (216)
+.+|.|+|+......- .. ...+..++.. -=++|+||+|+.+..+.... .+.+.+..+..++.+++++
T Consensus 110 d~~i~v~d~~~~~s~~~~~------~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 110 GVILFIIDISEQCGLTIKE------QINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp EEEEEEEETTCTTSSCHHH------HHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred cEEEEEEecccccCcchHH------HHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 5789999997532100 00 0112344432 23788899999875432111 1233444444444567776
Q ss_pred eec-CCCChhhhh
Q 027979 150 SVR-CQVDLSEVL 161 (216)
Q Consensus 150 ~~~-~~v~~~~l~ 161 (216)
++. .....+.++
T Consensus 184 ~SA~~g~gi~~l~ 196 (228)
T 2qu8_A 184 FSTLTGVGVEQAK 196 (228)
T ss_dssp CCTTTCTTHHHHH
T ss_pred EecccCCCHHHHH
Confidence 543 233444544
No 158
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=71.07 E-value=18 Score=27.03 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=24.3
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHh-----hccEEEEccCCCCCC
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-----FADVVILNKVDLVSP 124 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~-----~AD~IvlnK~D~v~~ 124 (216)
.+.+|.|+|+......-.- ...+...+. .-=+||+||+|+.+.
T Consensus 97 ~d~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 97 TDVILMCFSIDSPDSLENI------PEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp CSEEEEEEETTCHHHHHHH------HHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred CCEEEEEEECCCHHHHHHH------HHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 5778999998864322110 011122222 223778899999875
No 159
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=71.04 E-value=17 Score=27.33 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=34.0
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-----ccEEEEccC
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-----ADVVILNKV 119 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-----AD~IvlnK~ 119 (216)
...|+.+.|...-..+.... + -..+.+|.|+|+......-.- ...+...+.. -=+||+||+
T Consensus 74 ~~~i~Dt~G~~~~~~~~~~~-----~---~~~d~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~piilv~nK~ 139 (207)
T 2fv8_A 74 ELALWDTAGQEDYDRLRPLS-----Y---PDTDVILMCFSVDSPDSLENI------PEKWVPEVKHFCPNVPIILVANKK 139 (207)
T ss_dssp EEEEEECTTCTTCTTTGGGG-----C---TTCCEEEEEEETTCHHHHHHH------HHTHHHHHHHHSTTCCEEEEEECG
T ss_pred EEEEEECCCcHHHHHHHHhh-----c---CCCCEEEEEEECCCHHHHHHH------HHHHHHHHHHhCCCCCEEEEEEch
Confidence 45567777764332221111 1 135778999998864321110 0112222221 226788999
Q ss_pred CCCCC
Q 027979 120 DLVSP 124 (216)
Q Consensus 120 D~v~~ 124 (216)
|+.+.
T Consensus 140 Dl~~~ 144 (207)
T 2fv8_A 140 DLRSD 144 (207)
T ss_dssp GGGGC
T ss_pred hhhcc
Confidence 99765
No 160
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=70.47 E-value=11 Score=32.99 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=44.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH-hh---c---cEEEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AF---A---DVVIL 116 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI-~~---A---D~Ivl 116 (216)
....|+.|.|.-.-..+.. ..+ -.-+.+|.|+|+....... . ......++ .. . =+||+
T Consensus 366 ~~~~l~Dt~G~~~~~~~~~-----~~~---~~ad~~i~V~D~~~~~s~~-~------~~~~~~~~~~~~~~~~~p~ilv~ 430 (497)
T 3lvq_E 366 VKFNVWDVGGQDKIRPLWR-----HYY---TGTQGLIFVVDCADRDRID-E------ARQELHRIINDREMRDAIILIFA 430 (497)
T ss_dssp CEEEEEEECCCGGGSGGGG-----GGG---TTCCEEEEEEETTCGGGHH-H------HHHHHHHHHTSGGGTTCEEEEEE
T ss_pred EEEEEEECCCcHHHHHHHH-----HHh---ccCCEEEEEEECcchhHHH-H------HHHHHHHHhhhhhcCCCcEEEEE
Confidence 3456777777532222211 111 2357889999998643211 1 11112222 11 1 26888
Q ss_pred ccCCCCCCCCccchHHHHHHHHHhh---CCCCEEEEee
Q 027979 117 NKVDLVSPERSGDSLDELEKEIHEI---NSLAHVIRSV 151 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l~~l---NP~A~iv~~~ 151 (216)
||+|+.+.. ..+++.+.+... ...+++++++
T Consensus 431 NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 464 (497)
T 3lvq_E 431 NKQDLPDAM----KPHEIQEKLGLTRIRDRNWYVQPSC 464 (497)
T ss_dssp ECCSSSSCC----CHHHHHHHTTCTTCCSSCEEEEECB
T ss_pred ECCCCCcCC----CHHHHHHHhchhhhhcCCeEEEEEE
Confidence 999997753 235555544321 2334566543
No 161
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=69.84 E-value=5 Score=34.27 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=25.5
Q ss_pred ccEEEEEcccchHHHHhhcccCCChhHHHHHHhhcc-EEEEccCCCCCCC
Q 027979 77 DSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDLVSPE 125 (216)
Q Consensus 77 ~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD-~IvlnK~D~v~~~ 125 (216)
+.++.|+|+..+...+. +++.+.+..-. ++|+||+|+.+.+
T Consensus 71 ~~il~VvD~~d~~~~~~--------~~l~~~~~~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 71 ALVVKIVDIFDFNGSWL--------PGLHRFVGNNKVLLVGNKADLIPKS 112 (368)
T ss_dssp CEEEEEEETTSHHHHCC--------TTHHHHSSSSCEEEEEECGGGSCTT
T ss_pred cEEEEEEECCCCcccHH--------HHHHHHhCCCcEEEEEEChhcCCcc
Confidence 46899999998764432 22222222222 5778999998754
No 162
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=69.52 E-value=20 Score=29.32 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=36.5
Q ss_pred CCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhcc----EEEEcc
Q 027979 43 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD----VVILNK 118 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD----~IvlnK 118 (216)
.+|+|||.+.++........ +. -..+.+|.|+.+......- ...+.++++.+. -+|+||
T Consensus 201 ~yD~VIIDtpp~~~~~da~~-l~--------~~aD~vllVv~~~~~~~~~--------~~~~~~~l~~~g~~~~GvVlN~ 263 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTDAAI-VG--------RHVGTTLMVARYAVNTLKE--------VETSLSRFEQNGIPVKGVILNS 263 (286)
T ss_dssp HCSEEEEECCCTTTCTHHHH-HT--------TTCSEEEEEEETTTSBHHH--------HHHHHHHHHHTTCCCCEEEEEE
T ss_pred CCCEEEEcCCCCcchHHHHH-HH--------HHCCeEEEEEeCCCCcHHH--------HHHHHHHHHhCCCCEEEEEEcC
Confidence 58999999998754322211 11 1245688888886443211 223345555543 588899
Q ss_pred CCCC
Q 027979 119 VDLV 122 (216)
Q Consensus 119 ~D~v 122 (216)
.+.-
T Consensus 264 v~~~ 267 (286)
T 3la6_A 264 IFRR 267 (286)
T ss_dssp ECCC
T ss_pred cccc
Confidence 8753
No 163
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=68.43 E-value=13 Score=33.45 Aligned_cols=66 Identities=20% Similarity=0.132 Sum_probs=39.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---cEEEEccCC
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---DVVILNKVD 120 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---D~IvlnK~D 120 (216)
....||-|.|..+-...... ..-..+.+|.|+|+........ ..+..++... =++++||+|
T Consensus 82 ~~i~liDTPG~~df~~~~~~--------~l~~aD~allVvDa~~g~~~~t--------~~~~~~~~~~~iPiivviNK~D 145 (528)
T 3tr5_A 82 YLINLLDTPGHADFTEDTYR--------TLTAVDSALMVIDAAKGVEPRT--------IKLMEVCRLRHTPIMTFINKMD 145 (528)
T ss_dssp EEEEEECCCCSTTCCHHHHH--------GGGGCSEEEEEEETTTCSCHHH--------HHHHHHHHTTTCCEEEEEECTT
T ss_pred EEEEEEECCCchhHHHHHHH--------HHHhCCEEEEEEeCCCCCCHHH--------HHHHHHHHHcCCCEEEEEeCCC
Confidence 45678999998765433321 1124688999999986321110 1122344333 368999999
Q ss_pred CCCCC
Q 027979 121 LVSPE 125 (216)
Q Consensus 121 ~v~~~ 125 (216)
+....
T Consensus 146 l~~~~ 150 (528)
T 3tr5_A 146 RDTRP 150 (528)
T ss_dssp SCCSC
T ss_pred Ccccc
Confidence 97653
No 164
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=68.27 E-value=22 Score=26.06 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=34.7
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH-h------hccEEEE
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-A------FADVVIL 116 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI-~------~AD~Ivl 116 (216)
....++.+.|...-..+..... -..+.++.|+|+....... . ......++ . .-=+|+.
T Consensus 60 ~~l~i~Dt~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~~piilv~ 124 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIRPYWRSYF--------ENTDILIYVIDSADRKRFE-E------TGQELTELLEEEKLSCVPVLIFA 124 (181)
T ss_dssp EEEEEEECSSCGGGHHHHHHHH--------TTCSEEEEEEETTCGGGHH-H------HHHHHHHHTTCGGGTTCCEEEEE
T ss_pred EEEEEEECCCCHHHHHHHHHHh--------CCCCEEEEEEECcCHHHHH-H------HHHHHHHHHhChhhcCCCEEEEE
Confidence 3456677888654333332211 1356789999987642211 0 01111111 1 1126778
Q ss_pred ccCCCCCCC
Q 027979 117 NKVDLVSPE 125 (216)
Q Consensus 117 nK~D~v~~~ 125 (216)
||+|+.+..
T Consensus 125 NK~Dl~~~~ 133 (181)
T 1fzq_A 125 NKQDLLTAA 133 (181)
T ss_dssp ECTTSTTCC
T ss_pred ECcCcccCC
Confidence 999998753
No 165
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=68.26 E-value=12 Score=27.88 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=24.0
Q ss_pred eccEEEEEcccch-HHHHhhcccCCChhHHHHHHh----h-ccEEEEccCCCCCC
Q 027979 76 LDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIA----F-ADVVILNKVDLVSP 124 (216)
Q Consensus 76 l~~vI~vVDa~~~-~~~l~~~~~~~~~~~~~~QI~----~-AD~IvlnK~D~v~~ 124 (216)
.+.+|.|+|+..- ...+.. ......++. . -=+||.||+|+.++
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~------~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTR------LHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHH------HHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred CCEEEEEEECCCchHHHHHH------HHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 5778999999863 111111 112223331 1 22567799999874
No 166
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=68.11 E-value=23 Score=25.94 Aligned_cols=65 Identities=14% Similarity=0.057 Sum_probs=33.2
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh----c-cEEEEccC
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF----A-DVVILNKV 119 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~----A-D~IvlnK~ 119 (216)
...++.+.|...-..+.... + -..+.+|.|+|+.+....- .. ...+..++.. . =++|.||+
T Consensus 56 ~~~i~Dt~G~~~~~~~~~~~-----~---~~~~~~i~v~d~~~~~s~~-~~-----~~~~~~~i~~~~~~~piilv~nK~ 121 (184)
T 1m7b_A 56 ELSLWDTSGSPYYDNVRPLS-----Y---PDSDAVLICFDISRPETLD-SV-----LKKWKGEIQEFCPNTKMLLVGCKS 121 (184)
T ss_dssp EEEEEEECCSGGGTTTGGGG-----C---TTCSEEEEEEETTCHHHHH-HH-----HHTHHHHHHHHCTTCEEEEEEECG
T ss_pred EEEEEECCCChhhhhhHHhh-----c---CCCcEEEEEEECCCHHHHH-HH-----HHHHHHHHHHHCCCCCEEEEEEcc
Confidence 34667888864322221111 1 1346789999998654221 10 0112233322 1 25667999
Q ss_pred CCCC
Q 027979 120 DLVS 123 (216)
Q Consensus 120 D~v~ 123 (216)
|+.+
T Consensus 122 Dl~~ 125 (184)
T 1m7b_A 122 DLRT 125 (184)
T ss_dssp GGGG
T ss_pred hhhc
Confidence 9975
No 167
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=68.08 E-value=28 Score=27.54 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=41.0
Q ss_pred HHHHHHHHHh--cCCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHH
Q 027979 31 VQALEQLVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 108 (216)
Q Consensus 31 ~~~L~~l~~~--~~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI 108 (216)
...|.++++. ...+|+|||.+.|......+.. +. ....+.+|.|+.+...... . .....+++
T Consensus 114 ~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~-~~-------~~~aD~viiv~~~~~~s~~--~------~~~~~~~l 177 (262)
T 2ph1_A 114 AGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTV-MQ-------DAKPTGVVVVSTPQELTAV--I------VEKAINMA 177 (262)
T ss_dssp HHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHH-HH-------HHCCSEEEEEECSSSCCHH--H------HHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCEEEEECcCCCchHHHHH-Hh-------hccCCeEEEEecCccchHH--H------HHHHHHHH
Confidence 3556666642 1579999999998654432211 10 0124568888887744211 1 11223344
Q ss_pred hhcc---E-EEEccCCC
Q 027979 109 AFAD---V-VILNKVDL 121 (216)
Q Consensus 109 ~~AD---~-IvlnK~D~ 121 (216)
+..+ + ||+||.+.
T Consensus 178 ~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 178 EETNTSVLGLVENMSYF 194 (262)
T ss_dssp HTTTCCEEEEEETTCCE
T ss_pred HhCCCCEEEEEECCCcc
Confidence 3322 2 88999874
No 168
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=67.86 E-value=42 Score=26.31 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchH
Q 027979 32 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL 89 (216)
Q Consensus 32 ~~L~~l~~~~~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~ 89 (216)
..|.++++. ..+|+|||.+.+...+.. ...+. .-+.+|.++.+....
T Consensus 101 ~~l~~~l~~-~~yD~iiiD~pp~~~~~~-~~~l~---------~aD~viiv~~~~~~s 147 (257)
T 1wcv_1 101 TALREALRD-EGYDLVLLDAPPSLSPLT-LNALA---------AAEGVVVPVQAEYYA 147 (257)
T ss_dssp THHHHHCCC-TTCSEEEEECCSSCCHHH-HHHHH---------HCSEEEEEEESSTHH
T ss_pred HHHHHHhcc-cCCCEEEEeCCCCCCHHH-HHHHH---------HCCeEEEEecCchHH
Confidence 345565554 679999999998765432 22221 235689999887653
No 169
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=67.84 E-value=21 Score=27.03 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=23.4
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhh----c-cEEEEccCCCCC
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF----A-DVVILNKVDLVS 123 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~----A-D~IvlnK~D~v~ 123 (216)
.+.+|.|+|+.+....- +. ...+..++.. . =+||.||+|+.+
T Consensus 100 ~d~~ilv~D~~~~~s~~-~~-----~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 100 SDAVLICFDISRPETLD-SV-----LKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp CSEEEEEEETTCHHHHH-HH-----HHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred CCEEEEEEECCCHHHHH-HH-----HHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 56789999998654321 10 0112223322 1 256679999975
No 170
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=67.71 E-value=21 Score=26.52 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=33.6
Q ss_pred EEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-----ccEEEEccCCC
Q 027979 47 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-----ADVVILNKVDL 121 (216)
Q Consensus 47 IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-----AD~IvlnK~D~ 121 (216)
.++.+.|...-..+.... + -..+.+|.|+|+.+....-.- ...+...+.. -=+||+||+|+
T Consensus 71 ~i~Dt~G~~~~~~~~~~~-----~---~~~~~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 71 QLCDTAGQDEFDKLRPLC-----Y---TNTDIFLLCFSVVSPSSFQNV------SEKWVPEIRCHCPKAPIILVGTQSDL 136 (201)
T ss_dssp EEEECCCSTTCSSSGGGG-----G---TTCSEEEEEEETTCHHHHHHH------HHTHHHHHHHHCSSSCEEEEEECGGG
T ss_pred EEEECCCCHHHHHHhHhh-----c---CCCcEEEEEEECCCHHHHHHH------HHHHHHHHHHhCCCCCEEEEEECHhh
Confidence 367777775432222111 1 135788999999865432110 0012222322 12677899999
Q ss_pred CCC
Q 027979 122 VSP 124 (216)
Q Consensus 122 v~~ 124 (216)
.+.
T Consensus 137 ~~~ 139 (201)
T 2q3h_A 137 RED 139 (201)
T ss_dssp GGC
T ss_pred hhc
Confidence 763
No 171
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=67.39 E-value=17 Score=28.84 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=33.6
Q ss_pred eeccEEEEEcccch--HH--HHhhcccCCChhHHHHHHhhcc---EEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEE
Q 027979 75 RLDSIITVVDAKNL--LF--QIDKYRHLSSYPEAIHQIAFAD---VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV 147 (216)
Q Consensus 75 ~l~~vI~vVDa~~~--~~--~l~~~~~~~~~~~~~~QI~~AD---~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~i 147 (216)
..+.+|.|+|+.+- .. .+... ..++.......+ +||.||+|+.+.. .+++.++..+.. ..+++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~-----l~~i~~~~~~~~~piilV~NK~Dl~~~~----~v~~~~~~~~~~-~~~~~ 231 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKF-----VSNLYNQLAKTKKPIVVVLTKCDEGVER----YIRDAHTFALSK-KNLQV 231 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHH-----HHHHHHHHHHTTCCEEEEEECGGGBCHH----HHHHHHHHHHTS-SSCCE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHH-----HHHHHHHhccCCCCEEEEEEcccccccH----HHHHHHHHHHhc-CCCeE
Confidence 36899999999763 11 11110 111222211122 6777999997642 234444444332 34566
Q ss_pred EEee
Q 027979 148 IRSV 151 (216)
Q Consensus 148 v~~~ 151 (216)
++++
T Consensus 232 ~e~S 235 (255)
T 3c5h_A 232 VETS 235 (255)
T ss_dssp EECB
T ss_pred EEEE
Confidence 6644
No 172
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=66.76 E-value=8 Score=29.32 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=35.5
Q ss_pred EEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-----ccEEEEccCC
Q 027979 46 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-----ADVVILNKVD 120 (216)
Q Consensus 46 ~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-----AD~IvlnK~D 120 (216)
..++.+.|...-..+... .+ -..+.+|.|+|+......-.- ...+...+.. -=+||+||+|
T Consensus 80 l~i~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~piilv~nK~D 145 (204)
T 4gzl_A 80 LGLWDTAGLEDYDRLRPL-----SY---PQTDVFLICFSLVSPASFENV------RAKWYPEVRHHCPNTPIILVGTKLD 145 (204)
T ss_dssp EEEEEECCSGGGTTTGGG-----GC---TTCSEEEEEEETTCHHHHHHH------HHTHHHHHHHHCSSCCEEEEEECHH
T ss_pred EEEEECCCchhhHHHHHH-----Hh---ccCCEEEEEEECCCHHHHHHH------HHHHHHHHHHhCCCCCEEEEEechh
Confidence 347888887433222211 11 245788999999875532211 0112233332 2367889999
Q ss_pred CCCC
Q 027979 121 LVSP 124 (216)
Q Consensus 121 ~v~~ 124 (216)
+.+.
T Consensus 146 l~~~ 149 (204)
T 4gzl_A 146 LRDD 149 (204)
T ss_dssp HHTC
T ss_pred hccc
Confidence 9875
No 173
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=66.35 E-value=19 Score=32.93 Aligned_cols=65 Identities=20% Similarity=0.169 Sum_probs=36.8
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh---hccEEEEccCCC
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVDL 121 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~---~AD~IvlnK~D~ 121 (216)
..-||-|.|-.+-....... .-..+.+|.|||+......- . .. ...+.. .-=++++||+|+
T Consensus 72 ~l~liDTPGh~dF~~ev~~~--------l~~aD~aILVVDa~~gv~~q-t------~~-~~~~~~~~~ipiIvViNKiDl 135 (599)
T 3cb4_D 72 QLNFIDTPGHVDFSYEVSRS--------LAACEGALLVVDAGQGVEAQ-T------LA-NCYTAMEMDLEVVPVLNKIDL 135 (599)
T ss_dssp EEEEEECCCCGGGHHHHHHH--------HHHCSEEEEEEETTTCCCTH-H------HH-HHHHHHHTTCEEEEEEECTTS
T ss_pred EEEEEECCCchHHHHHHHHH--------HHHCCEEEEEEECCCCCCHH-H------HH-HHHHHHHCCCCEEEeeeccCc
Confidence 45588999987654433321 12357889999997532100 0 01 111211 223788999999
Q ss_pred CCCC
Q 027979 122 VSPE 125 (216)
Q Consensus 122 v~~~ 125 (216)
.+..
T Consensus 136 ~~a~ 139 (599)
T 3cb4_D 136 PAAD 139 (599)
T ss_dssp TTCC
T ss_pred cccc
Confidence 8753
No 174
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=65.76 E-value=4.4 Score=38.41 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=42.0
Q ss_pred CCCEEEEecCCCCC------cHHHHH---HhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc--
Q 027979 43 RLDHILLETTGLAN------PAPLAS---VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-- 111 (216)
Q Consensus 43 ~~d~IiIE~sG~a~------P~~i~~---~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A-- 111 (216)
.++.++|-|.|+.. |..+.. .+. ...+.. .-+-++.|||+......-+ .-.+.+++...
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv-~~yi~~--~aDlIL~VVDAs~~~~~~d-------~l~ll~~L~~~g~ 218 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVTK--ENCLILAVSPANSDLANSD-------ALKIAKEVDPQGQ 218 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHH-HHHHTS--TTEEEEEEEETTSCSSSCH-------HHHHHHHHCTTCS
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHH-HHHHhc--CCcEEEEEEcCCCCcchhH-------HHHHHHHHHhcCC
Confidence 45688999999987 432221 111 111111 2345789999975321100 00234566543
Q ss_pred -cEEEEccCCCCCCCC
Q 027979 112 -DVVILNKVDLVSPER 126 (216)
Q Consensus 112 -D~IvlnK~D~v~~~~ 126 (216)
-++|+||+|+++...
T Consensus 219 pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 219 RTIGVITKLDLMDEGT 234 (772)
T ss_dssp SEEEEEECTTSSCTTC
T ss_pred CEEEEEeCcccCCcch
Confidence 478999999998653
No 175
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=65.62 E-value=11 Score=31.63 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=38.4
Q ss_pred CCCEEEEecCCCCCc-------------HHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh
Q 027979 43 RLDHILLETTGLANP-------------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 109 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P-------------~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~ 109 (216)
.++..+|-+.|+... ..++.... -.-+.+|.++|+.+....... .-.+.+++.
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--------~~~d~iilvv~~~~~~~~~~~------~~~l~~~~~ 200 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--------EKPNCIILAISPANQDLATSD------AIKISREVD 200 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--------HSSSEEEEEEEETTSCGGGCH------HHHHHHHSC
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--------hcCCeEEEEeecccCCcCCHH------HHHHHHHhc
Confidence 457899999998874 22222211 123457888887543211000 011233443
Q ss_pred h---ccEEEEccCCCCCCC
Q 027979 110 F---ADVVILNKVDLVSPE 125 (216)
Q Consensus 110 ~---AD~IvlnK~D~v~~~ 125 (216)
. --++|+||+|+++..
T Consensus 201 ~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 201 PSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp TTCTTEEEEEECGGGCCTT
T ss_pred ccCCCEEEEEeCCccCCCc
Confidence 2 357889999999765
No 176
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=65.17 E-value=23 Score=26.97 Aligned_cols=42 Identities=17% Similarity=0.033 Sum_probs=24.6
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-----ccEEEEccCCCCC
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-----ADVVILNKVDLVS 123 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-----AD~IvlnK~D~v~ 123 (216)
.+.+|.|+|+.+......- ...+...+.. -=+||.||+|+.+
T Consensus 99 ~d~~i~v~d~~~~~s~~~~------~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSA------LKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp CSEEEEEEETTCTHHHHHH------HTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred CeEEEEEEECcCHHHHHHH------HHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 5788999999875432210 1122233322 2356779999975
No 177
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=64.83 E-value=8.3 Score=31.76 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=37.7
Q ss_pred eccEEEEEcccchHHH--HhhcccCCChhHHHHHHh-----hccEEEEccCCCCCCCCcc----chHHHHHHHHHhhC-C
Q 027979 76 LDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIA-----FADVVILNKVDLVSPERSG----DSLDELEKEIHEIN-S 143 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~--l~~~~~~~~~~~~~~QI~-----~AD~IvlnK~D~v~~~~~~----~~l~~i~~~l~~lN-P 143 (216)
.+.+|.|+|+.+.... +.. +-....++. .-=++++||+|+.++++.. ...+++.+..+.++ |
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~------~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEI------FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHH------HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEEEECCChhhHHHHHH------HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC
Confidence 5789999999865321 111 011122222 2235667999998743210 01134444444443 2
Q ss_pred CCEEEEeecCC
Q 027979 144 LAHVIRSVRCQ 154 (216)
Q Consensus 144 ~A~iv~~~~~~ 154 (216)
..++++++--.
T Consensus 155 ~~~~~~tSa~~ 165 (307)
T 3r7w_A 155 NLIGFPTSIWD 165 (307)
T ss_dssp SCEEEECCTTS
T ss_pred CeEEEEeeecC
Confidence 57888776433
No 178
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=64.45 E-value=4.8 Score=35.87 Aligned_cols=72 Identities=24% Similarity=0.338 Sum_probs=37.7
Q ss_pred CEEEEecCCCC-CcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-ccEEEEccCCCC
Q 027979 45 DHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDLV 122 (216)
Q Consensus 45 d~IiIE~sG~a-~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-AD~IvlnK~D~v 122 (216)
...++.|.|.- ++....+.+.....+...-.-+.++.|+|+......- . .++.+.+.. --+||+||+|+.
T Consensus 292 ~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~-~-------~~il~~l~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 292 LFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEE-D-------RKILERIKNKRYLVVINKVDVV 363 (482)
T ss_dssp EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHH-H-------HHHHHHHTTSSEEEEEEECSSC
T ss_pred EEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHH-H-------HHHHHHhcCCCEEEEEECcccc
Confidence 46788999987 6543221110000001112457789999987542211 0 112233321 237888999997
Q ss_pred CC
Q 027979 123 SP 124 (216)
Q Consensus 123 ~~ 124 (216)
+.
T Consensus 364 ~~ 365 (482)
T 1xzp_A 364 EK 365 (482)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 179
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=63.90 E-value=46 Score=25.37 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=37.7
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhcc----EEEEc
Q 027979 42 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD----VVILN 117 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD----~Ivln 117 (216)
..+|+|||++.+...+. ....+. ..+.+|.|+.+...... . ...+.+++.... .+|+|
T Consensus 110 ~~yD~viiD~~~~~~~~-~~~~~~---------~ad~vi~v~~~~~~~~~--~------~~~~~~~l~~~~~~~~~vv~N 171 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQLD-AMSAML---------SGEEALLVTNPEISCLT--D------TMKVGIVLKKAGLAILGFVLN 171 (237)
T ss_dssp GGCSEEEEECCSSSSHH-HHHHHT---------TCSEEEEEECSCHHHHH--H------HHHHHHHHHHTTCEEEEEEEE
T ss_pred hcCCEEEEECCCCcCHH-HHHHHH---------HCCeEEEEecCCcccHH--H------HHHHHHHHHhCCCceEEEEEe
Confidence 46999999998866532 222221 23568999988754321 1 122334444332 47899
Q ss_pred cCCCCCC
Q 027979 118 KVDLVSP 124 (216)
Q Consensus 118 K~D~v~~ 124 (216)
|.+....
T Consensus 172 ~~~~~~~ 178 (237)
T 1g3q_A 172 RYGRSDR 178 (237)
T ss_dssp EETSCTT
T ss_pred cCCcccc
Confidence 9986443
No 180
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=63.57 E-value=30 Score=28.93 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=52.9
Q ss_pred CCCCEEEEecCCCCCc-HHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEccCC
Q 027979 42 ERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 120 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P-~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~IvlnK~D 120 (216)
..+|+++|++.|...- ..+++.|. .+...+..+..+.++|+..-.+.+.. . ....+-...+.|++||.|
T Consensus 210 ~~~d~vliDtaG~~~~~~~l~~eL~---~i~ral~~de~llvLDa~t~~~~~~~------~-~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 210 RGIDVVLIDTAGRSETNRNLMDEMK---KIARVTKPNLVIFVGDALAGNAIVEQ------A-RQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HTCSEEEEEECCSCCTTTCHHHHHH---HHHHHHCCSEEEEEEEGGGTTHHHHH------H-HHHHHHSCCCEEEEECGG
T ss_pred ccchhhHHhhccchhHHHHHHHHHH---HHHHHhcCCCCEEEEecHHHHHHHHH------H-HHHHHhcCCCEEEEeCcC
Confidence 3589999999999642 22333221 12233446778999998765433211 0 111222356899999999
Q ss_pred CCCCCCccchHHHHHHHHHhhCCCCEEEEeecC
Q 027979 121 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRC 153 (216)
Q Consensus 121 ~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~~ 153 (216)
..... ..+...+...+ .+|.....|
T Consensus 280 ~~a~~------G~~l~~~~~~~--~pi~~i~~G 304 (328)
T 3e70_C 280 ADARG------GAALSISYVID--APILFVGVG 304 (328)
T ss_dssp GCSCC------HHHHHHHHHHT--CCEEEEECS
T ss_pred Cccch------hHHHHHHHHHC--CCEEEEeCC
Confidence 74332 33444444443 456655555
No 181
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=63.40 E-value=7.2 Score=28.74 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=36.4
Q ss_pred CEEEEecCCCCCcH------HHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---ccEEE
Q 027979 45 DHILLETTGLANPA------PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---ADVVI 115 (216)
Q Consensus 45 d~IiIE~sG~a~P~------~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD~Iv 115 (216)
...++.+.|..... .+...+. . .-..+.++.|+|+.++.... .+..++.. --+++
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~-----~-~~~~~~~i~v~d~~~~~~~~----------~~~~~~~~~~~piilv 118 (188)
T 2wjg_A 55 KFKVVDLPGVYSLTANSIDEIIARDYI-----I-NEKPDLVVNIVDATALERNL----------YLTLQLMEMGANLLLA 118 (188)
T ss_dssp EEEEEECCCCSCCSSSSHHHHHHHHHH-----H-HHCCSEEEEEEEGGGHHHHH----------HHHHHHHTTTCCEEEE
T ss_pred EEEEEECCCcCccccccHHHHHHHHHH-----h-ccCCCEEEEEecchhHHHHH----------HHHHHHHhcCCCEEEE
Confidence 45677888876542 1222211 0 01256789999998865332 12233332 33788
Q ss_pred EccCCCCCC
Q 027979 116 LNKVDLVSP 124 (216)
Q Consensus 116 lnK~D~v~~ 124 (216)
.||+|+.+.
T Consensus 119 ~nK~Dl~~~ 127 (188)
T 2wjg_A 119 LNKMDLAKS 127 (188)
T ss_dssp EECHHHHHH
T ss_pred EEhhhcccc
Confidence 899998654
No 182
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=62.32 E-value=8.8 Score=33.34 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=28.3
Q ss_pred hccEEEEccCCCCCCCCccchHHHHHHHHHhh---CCCCEEEEeec-CCCChhhhhc
Q 027979 110 FADVVILNKVDLVSPERSGDSLDELEKEIHEI---NSLAHVIRSVR-CQVDLSEVLN 162 (216)
Q Consensus 110 ~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~l---NP~A~iv~~~~-~~v~~~~l~~ 162 (216)
..=++++||+|+.+..+ ...+++.+.++.. ...++++.++- .....+.++.
T Consensus 293 ~~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 293 RASVVVFNKWDLVVHRE--KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp CEEEEEEECGGGSTTGG--GCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHH
T ss_pred CCEEEEEECccCCCchh--hHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHH
Confidence 34578889999987532 1245555554332 23577776543 2344555553
No 183
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=62.00 E-value=19 Score=26.02 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=34.2
Q ss_pred EEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-----ccEEEEccCC
Q 027979 46 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-----ADVVILNKVD 120 (216)
Q Consensus 46 ~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-----AD~IvlnK~D 120 (216)
..++.+.|......+... .+ -..+.+|.|+|+......-.- ...+...+.. -=+||+||+|
T Consensus 55 ~~i~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~piilv~nK~D 120 (186)
T 1mh1_A 55 LGLWDTAGQEDYDRLRPL-----SY---PQTDVSLICFSLVSPASFENV------RAKWYPEVRHHCPNTPIILVGTKLD 120 (186)
T ss_dssp EEEECCCCSGGGTTTGGG-----GC---TTCSEEEEEEETTCHHHHHHH------HHTHHHHHHHHSTTSCEEEEEECHH
T ss_pred EEEEECCCCHhHHHHHHH-----hc---cCCcEEEEEEECCChhhHHHH------HHHHHHHHHHhCCCCCEEEEeEccc
Confidence 347788887433222111 11 135778999999875322110 0012223322 2268889999
Q ss_pred CCCC
Q 027979 121 LVSP 124 (216)
Q Consensus 121 ~v~~ 124 (216)
+.+.
T Consensus 121 l~~~ 124 (186)
T 1mh1_A 121 LRDD 124 (186)
T ss_dssp HHTC
T ss_pred cccc
Confidence 9764
No 184
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=61.32 E-value=46 Score=25.97 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=36.2
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhcc----EEEEc
Q 027979 42 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD----VVILN 117 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD----~Ivln 117 (216)
..+|+|||.+.+...+. ....+. ..+.+|.|+.+...... . ...+.+++.... .+|+|
T Consensus 109 ~~yD~viiD~~~~~~~~-~~~~~~---------~ad~vi~v~~~~~~~~~--~------~~~~~~~l~~~~~~~~~vv~N 170 (263)
T 1hyq_A 109 ESTDILLLDAPAGLERS-AVIAIA---------AAQELLLVVNPEISSIT--D------GLKTKIVAERLGTKVLGVVVN 170 (263)
T ss_dssp HTCSEEEEECCSSSSHH-HHHHHH---------HSSEEEEEECSSHHHHH--H------HHHHHHHHHHHTCEEEEEEEE
T ss_pred hhCCEEEEeCCCCCChH-HHHHHH---------HCCEEEEEeCCChhHHH--H------HHHHHHHHHhcCCCeeEEEEc
Confidence 36899999999766532 222221 23468888888754321 1 112233333322 37899
Q ss_pred cCCCCC
Q 027979 118 KVDLVS 123 (216)
Q Consensus 118 K~D~v~ 123 (216)
|.+...
T Consensus 171 ~~~~~~ 176 (263)
T 1hyq_A 171 RITTLG 176 (263)
T ss_dssp EECTTT
T ss_pred cCCccc
Confidence 988644
No 185
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=58.93 E-value=12 Score=32.99 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=42.8
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHH--HHhhcccCCChhHH---HHHHhhcc-EEEEcc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEA---IHQIAFAD-VVILNK 118 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~--~l~~~~~~~~~~~~---~~QI~~AD-~IvlnK 118 (216)
.+.|+.|.|-.+=.... ....-..+.+|.|||+..... -+... ..-.+. ..+...-. +|++||
T Consensus 122 ~~~iiDtPGh~~f~~~~--------~~~~~~aD~~ilVvDa~~g~~e~sf~~~---~qt~e~l~~~~~~~vp~iivviNK 190 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVTNM--------INGASQADIGVLVISARRGEFEAGFERG---GQTREHAVLARTQGINHLVVVINK 190 (467)
T ss_dssp EEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTT---CCHHHHHHHHHHTTCSSEEEEEEC
T ss_pred EEEEEECCCcHHHHHHH--------HhhcccCCEEEEEEeCCcCccccccCCC---CcHHHHHHHHHHcCCCEEEEEEEC
Confidence 35677777764321111 112234678999999986531 11100 000111 12222222 567999
Q ss_pred CCCCCCCCc----cchHHHHHHHHHhh-C----CCCEEEEee
Q 027979 119 VDLVSPERS----GDSLDELEKEIHEI-N----SLAHVIRSV 151 (216)
Q Consensus 119 ~D~v~~~~~----~~~l~~i~~~l~~l-N----P~A~iv~~~ 151 (216)
+|+.+.+.. ....+++++.++.+ . ..+++++++
T Consensus 191 ~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vS 232 (467)
T 1r5b_A 191 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVS 232 (467)
T ss_dssp TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECB
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecc
Confidence 999653210 01123455555554 2 146777644
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=58.64 E-value=4 Score=38.10 Aligned_cols=69 Identities=13% Similarity=0.038 Sum_probs=39.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---ccEEEEccCC
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---ADVVILNKVD 120 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD~IvlnK~D 120 (216)
.+..||.|.|+.++....... ...+ -..+.++.|+|+.+....-. ...+...+.. --++|+||+|
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~--~~~i---~~aD~vL~Vvda~~~~s~~e-------~~~l~~~l~~~~~~iiiVlNK~D 241 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELS--LGYV---NNCHAILFVMRASQPCTLGE-------RRYLENYIKGRGLTVFFLVNAWD 241 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHH--THHH---HSSSEEEEEEETTSTTCHHH-------HHHHHHHTTTSCCCEEEEEECGG
T ss_pred CCeEEEECCCCCchhhHHHHH--HHHH---HhCCEEEEEEeCCCccchhH-------HHHHHHHHHhhCCCEEEEEECcc
Confidence 478999999987654322211 1111 12578999999975421110 1111222321 2478899999
Q ss_pred CCCC
Q 027979 121 LVSP 124 (216)
Q Consensus 121 ~v~~ 124 (216)
+.+.
T Consensus 242 l~~~ 245 (695)
T 2j69_A 242 QVRE 245 (695)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9764
No 187
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=58.56 E-value=17 Score=27.36 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=38.9
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-----ccEEEEccCCCCCCCCc------cchHHHHHHHHHhhCCC
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-----ADVVILNKVDLVSPERS------GDSLDELEKEIHEINSL 144 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-----AD~IvlnK~D~v~~~~~------~~~l~~i~~~l~~lNP~ 144 (216)
.+.+|.|+|+.+......- ...+...+.. -=+||+||+|+.+.... ....++..+..+.++ .
T Consensus 81 ~d~~ilv~d~~~~~s~~~~------~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~-~ 153 (212)
T 2j0v_A 81 ADIFVLAFSLISKASYENV------LKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG-A 153 (212)
T ss_dssp CSEEEEEEETTCHHHHHHH------HHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT-C
T ss_pred CCEEEEEEECCCHHHHHHH------HHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC-C
Confidence 5788999999865432110 0112233322 22677899999764210 001344455555554 2
Q ss_pred CEEEEeec-CCCChhhhh
Q 027979 145 AHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 145 A~iv~~~~-~~v~~~~l~ 161 (216)
.++++++. ....++.++
T Consensus 154 ~~~~~~Sa~~g~gi~~l~ 171 (212)
T 2j0v_A 154 AAYIECSSKTQQNVKAVF 171 (212)
T ss_dssp SEEEECCTTTCTTHHHHH
T ss_pred ceEEEccCCCCCCHHHHH
Confidence 36665443 223444444
No 188
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=58.46 E-value=17 Score=26.35 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=24.4
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-----ccEEEEccCCCCCC
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-----ADVVILNKVDLVSP 124 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-----AD~IvlnK~D~v~~ 124 (216)
.+.+|.|+|+.+....-.- ...+...+.. -=++|+||+|+.+.
T Consensus 80 ~d~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 80 ADVFILAFSLISKASYENV------SKKWIPELKHYAPGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp CSEEEEEEETTCHHHHHHH------HHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred CCEEEEEEECCCHHHHHHH------HHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence 5789999999765432110 0012222222 12677899999764
No 189
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=58.12 E-value=7.9 Score=28.12 Aligned_cols=40 Identities=28% Similarity=0.344 Sum_probs=24.7
Q ss_pred eeccEEEEEcccchHHHHhhcccCCChhHHHHHHh---hccEEEEccCCCCCC
Q 027979 75 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVDLVSP 124 (216)
Q Consensus 75 ~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~---~AD~IvlnK~D~v~~ 124 (216)
..+.++.|+|+.++.... .+..++. ..=+++.||+|+...
T Consensus 81 ~~~~~i~v~D~~~~~~~~----------~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 81 KPDLVVNIVDATALERNL----------YLTLQLMEMGANLLLALNKMDLAKS 123 (165)
T ss_dssp CCSEEEEEEETTCHHHHH----------HHHHHHHHTTCCEEEEEECHHHHHH
T ss_pred CCCEEEEEecCCchhHhH----------HHHHHHHhcCCCEEEEEEchHhccc
Confidence 356789999998865322 1223332 223677899998643
No 190
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=58.10 E-value=62 Score=24.93 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=41.7
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHH---Hhhcc---EEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEE
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFAD---VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 149 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~Q---I~~AD---~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~ 149 (216)
-+.++.|.|..+....- + ....... ....+ +||.||+|+.+..+. ..++..+..++++ ++.++
T Consensus 86 a~~~ilv~di~~~~Sf~-~------i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V--~~~e~~~~a~~~~--~~~~e 154 (216)
T 4dkx_A 86 SAAAVVVYDITNVNSFQ-Q------TTKWIDDVRTERGSDVIIMLVGNKTDLADKRQV--SIEEGERKAKELN--VMFIE 154 (216)
T ss_dssp CSEEEEEEETTCHHHHH-T------HHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEE
T ss_pred ccEEEEEeecchhHHHH-H------HHHHHHHHHHhcCCCCeEEEEeeccchHhcCcc--cHHHHhhHHHHhC--CeeEE
Confidence 35667777777654321 1 1222222 22223 455699999765432 4566667777665 67776
Q ss_pred eec-CCCChhhhhc
Q 027979 150 SVR-CQVDLSEVLN 162 (216)
Q Consensus 150 ~~~-~~v~~~~l~~ 162 (216)
++- ...+.+++|.
T Consensus 155 ~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 155 TSAKAGYNVKQLFR 168 (216)
T ss_dssp EBTTTTBSHHHHHH
T ss_pred EeCCCCcCHHHHHH
Confidence 543 3455666553
No 191
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=57.23 E-value=3.2 Score=37.98 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=7.8
Q ss_pred eeccEEEEEcccc
Q 027979 75 RLDSIITVVDAKN 87 (216)
Q Consensus 75 ~l~~vI~vVDa~~ 87 (216)
..+.+|.|||+..
T Consensus 278 ~aD~alLVVDa~~ 290 (592)
T 3mca_A 278 SADFAVLVVDSSQ 290 (592)
T ss_dssp ----CCSEEEEEE
T ss_pred hCCEEEEEEECCC
Confidence 4677899999975
No 192
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=56.73 E-value=82 Score=25.91 Aligned_cols=108 Identities=14% Similarity=0.118 Sum_probs=55.4
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhhc-Cccccc--ceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEc
Q 027979 42 ERLDHILLETTGLANPA-PLASVLWL-DDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN 117 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P~-~i~~~l~~-~~~l~~--~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~Ivln 117 (216)
.+||+|||-+.|...-. .+++.+.. ...+.. .-..+.++.|+|+.+-.+.+.. . ....+-..-+-+|+|
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~------a-~~~~~~~~i~gvVlT 257 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQ------A-KIFKEAVNVTGIILT 257 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHH------H-HHHHHHSCCCEEEEE
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHH------H-HHHHhcCCCCEEEEe
Confidence 47999999999974322 22222210 000110 0125567889999755433321 1 111222334679999
Q ss_pred cCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeecCCCChhhhhccCCCCc
Q 027979 118 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 168 (216)
Q Consensus 118 K~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~~~v~~~~l~~~~~~~~ 168 (216)
|.|..... ..+.+.....+ .+|.....|+- ++++ ..|++
T Consensus 258 k~D~~~~g------G~~l~~~~~~~--~Pi~~i~~Ge~-~~dl---~~f~~ 296 (306)
T 1vma_A 258 KLDGTAKG------GITLAIARELG--IPIKFIGVGEK-AEDL---RPFDP 296 (306)
T ss_dssp CGGGCSCT------THHHHHHHHHC--CCEEEEECSSS-GGGE---EECCH
T ss_pred CCCCccch------HHHHHHHHHHC--CCEEEEeCCCC-hhhc---ccCCH
Confidence 99975443 22444444443 46666666653 3333 45554
No 193
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=56.46 E-value=17 Score=27.72 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=26.2
Q ss_pred eeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh-----ccEEEEccCCCCCCC
Q 027979 75 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-----ADVVILNKVDLVSPE 125 (216)
Q Consensus 75 ~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~-----AD~IvlnK~D~v~~~ 125 (216)
..+.+|.|+|+......- . ...+..++.. -=+||+||+|+.+..
T Consensus 87 ~~~~~i~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVTYK-N------VPNWHRDLVRVCENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp TCCEEEEEEETTCHHHHH-T------HHHHHHHHHHHSTTCCEEEEEECTTSSSCS
T ss_pred cCCEEEEEEECCCHHHHH-H------HHHHHHHHHHhCCCCCEEEEEECCcccccc
Confidence 357889999998754321 1 1222233322 236778999997654
No 194
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=56.22 E-value=2.4 Score=37.24 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=38.4
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---ccEEEEccCCC
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---ADVVILNKVDL 121 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD~IvlnK~D~ 121 (216)
...++-|.|..+...+-... ........-..+.+|.|+|+ ...... ..+..++.. -=++|+||+|+
T Consensus 84 ~l~liDTpG~~d~~~l~~~~-~~~~~~~l~~aD~vllVvD~-~~~~~~---------~~~l~~l~~~~~piIvV~NK~Dl 152 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLR-VEKARRVFYRADCGILVTDS-APTPYE---------DDVVNLFKEMEIPFVVVVNKIDV 152 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCC-HHHHHHHHTSCSEEEEECSS-SCCHHH---------HHHHHHHHHTTCCEEEECCCCTT
T ss_pred eEEEEECcCCCcccchhHHH-HHHHHHHHhcCCEEEEEEeC-CChHHH---------HHHHHHHHhcCCCEEEEEeCcCC
Confidence 56788899987654331000 00000111236788999999 332222 122333333 33788899999
Q ss_pred CCCCC
Q 027979 122 VSPER 126 (216)
Q Consensus 122 v~~~~ 126 (216)
.++..
T Consensus 153 ~~~~~ 157 (423)
T 3qq5_A 153 LGEKA 157 (423)
T ss_dssp TTCCC
T ss_pred CCccH
Confidence 88753
No 195
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=54.79 E-value=24 Score=32.34 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=37.1
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHH--HHHHhhccEEEEccCCCC
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA--IHQIAFADVVILNKVDLV 122 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~--~~QI~~AD~IvlnK~D~v 122 (216)
..-||.|.|-.+-......- .-..+++|.|||+......- . ...+ ......-=++++||+|+.
T Consensus 74 ~inliDTPGh~dF~~ev~r~--------l~~aD~aILVVDa~~gv~~q-t------~~~~~~a~~~~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 74 KLHLIDTPGHVDFSYEVSRA--------LAACEGALLLIDASQGIEAQ-T------VANFWKAVEQDLVIIPVINKIDLP 138 (600)
T ss_dssp EEEEECCCCSGGGHHHHHHH--------HHTCSEEEEEEETTTBCCHH-H------HHHHHHHHHTTCEEEEEEECTTST
T ss_pred EEEEEECCCcHhHHHHHHHH--------HHhCCEEEEEEECCCCccHH-H------HHHHHHHHHCCCCEEEEEeccCcc
Confidence 44589999987654332211 12357889999997642110 0 0001 111222358889999997
Q ss_pred CCC
Q 027979 123 SPE 125 (216)
Q Consensus 123 ~~~ 125 (216)
+..
T Consensus 139 ~a~ 141 (600)
T 2ywe_A 139 SAD 141 (600)
T ss_dssp TCC
T ss_pred ccC
Confidence 753
No 196
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=54.54 E-value=32 Score=26.39 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh
Q 027979 30 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 109 (216)
Q Consensus 30 l~~~L~~l~~~~~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~ 109 (216)
+...|..+. +..+|+|||.+.+..... ....+ ..-+.+|.++.+....-.--. ..-+..+++.
T Consensus 120 l~~~l~~l~--~~~yD~viiD~pp~~~~~-~~~~l---------~~aD~viiv~~~~~~s~~~~~-----~~~~~~~~~~ 182 (254)
T 3kjh_A 120 LGSVVSALF--LDKKEAVVMDMGAGIEHL-TRGTA---------KAVDMMIAVIEPNLNSIKTGL-----NIEKLAGDLG 182 (254)
T ss_dssp HHHHHHHHH--HTCCSEEEEEECTTCTTC-CHHHH---------TTCSEEEEEECSSHHHHHHHH-----HHHHHHHHHT
T ss_pred HHHHHHHhc--cCCCCEEEEeCCCcccHH-HHHHH---------HHCCEEEEecCCCHHHHHHHH-----HHHHHHHHcC
Confidence 555555552 357999999998765442 12222 123568899988754321100 0111223333
Q ss_pred hcc-EEEEccCC
Q 027979 110 FAD-VVILNKVD 120 (216)
Q Consensus 110 ~AD-~IvlnK~D 120 (216)
... .+|+||.+
T Consensus 183 ~~~~~~v~N~~~ 194 (254)
T 3kjh_A 183 IKKVRYVINKVR 194 (254)
T ss_dssp CSCEEEEEEEEC
T ss_pred CccEEEEEeCCC
Confidence 322 48899987
No 197
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=54.46 E-value=19 Score=30.15 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=37.1
Q ss_pred eccEEEEEcccchHH-HHhhcccCCChhHHHHHHh-----hccEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEE
Q 027979 76 LDSIITVVDAKNLLF-QIDKYRHLSSYPEAIHQIA-----FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 149 (216)
Q Consensus 76 l~~vI~vVDa~~~~~-~l~~~~~~~~~~~~~~QI~-----~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~ 149 (216)
-+.++.|+|+..... .+.. ...+..++. ..=++|+||+|+.+.. .++++.+.++..+ .+++.
T Consensus 247 ad~illV~D~s~~~~~~~~~------~~~~~~~i~~~~~~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~--~~~~~ 314 (357)
T 2e87_A 247 GNLIIYIFDPSEHCGFPLEE------QIHLFEEVHGEFKDLPFLVVINKIDVADEE----NIKRLEKFVKEKG--LNPIK 314 (357)
T ss_dssp CSEEEEEECTTCTTSSCHHH------HHHHHHHHHHHTTTSCEEEEECCTTTCCHH----HHHHHHHHHHHTT--CCCEE
T ss_pred CCEEEEEEeCCccccCCHHH------HHHHHHHHHHhcCCCCEEEEEECcccCChH----HHHHHHHHHHhcC--CCeEE
Confidence 467899999765320 0000 011222222 2236888999998753 2344555555433 45555
Q ss_pred eec-CCCChhhhh
Q 027979 150 SVR-CQVDLSEVL 161 (216)
Q Consensus 150 ~~~-~~v~~~~l~ 161 (216)
++- ....++.++
T Consensus 315 iSA~~g~gi~~l~ 327 (357)
T 2e87_A 315 ISALKGTGIDLVK 327 (357)
T ss_dssp CBTTTTBTHHHHH
T ss_pred EeCCCCcCHHHHH
Confidence 442 223444544
No 198
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=54.41 E-value=32 Score=27.81 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=35.7
Q ss_pred cCCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh----ccE---
Q 027979 41 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF----ADV--- 113 (216)
Q Consensus 41 ~~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~----AD~--- 113 (216)
...+|+|||-+.+......+...+ ..-+.+|.|+.+....-. . ...+.+.+.. .++
T Consensus 154 ~~~yD~ViiD~p~~~~~~~~~~~l---------~~aD~viiv~~~~~~s~~--~------~~~~~~~l~~~~~~~~~~~~ 216 (307)
T 3end_A 154 LDDTDVVIFDVLGDVVCGGFAAPL---------QHADQAVVVTANDFDSIY--A------MNRIIAAVQAKSKNYKVRLA 216 (307)
T ss_dssp TSSCSEEEEEECCSSCCGGGGGGG---------GTCSEEEEEECSSHHHHH--H------HHHHHHHHHTTTTTCCCEEE
T ss_pred cccCCEEEEeCCCccchHHHHHHH---------HHCCEEEEEecCcHHHHH--H------HHHHHHHHHHhhhcCCCceE
Confidence 357999999987654322222221 123558889988754311 1 1223344432 232
Q ss_pred -EEEccCCC
Q 027979 114 -VILNKVDL 121 (216)
Q Consensus 114 -IvlnK~D~ 121 (216)
||+||.+.
T Consensus 217 gvV~N~~~~ 225 (307)
T 3end_A 217 GCVANRSRA 225 (307)
T ss_dssp EEEEESCSC
T ss_pred EEEEecCCc
Confidence 89999983
No 199
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=53.69 E-value=54 Score=25.11 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=22.7
Q ss_pred EEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhh
Q 027979 113 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVL 161 (216)
Q Consensus 113 ~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~ 161 (216)
++|.||+|+.+..+. ..++.+...+..+ +++++++- .....+.++
T Consensus 149 ilVgNK~DL~~~r~v--~~~e~~~~a~~~~--~~~~e~SAk~g~~v~elf 194 (211)
T 2g3y_A 149 ILVGNKSDLVRCREV--SVSEGRACAVVFD--CKFIETSAAVQHNVKELF 194 (211)
T ss_dssp EEEEECTTCGGGCCS--CHHHHHHHHHHHT--CEEEECBTTTTBSHHHHH
T ss_pred EEEEEChHHhcCceE--eHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence 566799999754321 2233333333333 56776443 233455554
No 200
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=53.05 E-value=8.3 Score=30.80 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=35.3
Q ss_pred CEEEEecCCCCCcHH----HHHHhhcCcccccceeeccEEEEEccc--chHHHHhhcccCCChhHHHHHHhh--------
Q 027979 45 DHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAK--NLLFQIDKYRHLSSYPEAIHQIAF-------- 110 (216)
Q Consensus 45 d~IiIE~sG~a~P~~----i~~~l~~~~~l~~~~~l~~vI~vVDa~--~~~~~l~~~~~~~~~~~~~~QI~~-------- 110 (216)
...|+-|.|..+... ..+.++ ..+ .....+.++.|+|.. .+...- ..+.++|..
T Consensus 85 ~l~liDTpG~~~~~~~~~~~~~~i~--~~l-~~~~~~~il~V~~~d~~~~~~~~---------~~~~~~l~~~~~~~~~~ 152 (262)
T 3def_A 85 TINIIDTPGLVEAGYVNHQALELIK--GFL-VNRTIDVLLYVDRLDVYAVDELD---------KQVVIAITQTFGKEIWC 152 (262)
T ss_dssp EEEEEECCCSEETTEECHHHHHHHH--HHT-TTCEECEEEEEEESSCSCCCHHH---------HHHHHHHHHHHCGGGGG
T ss_pred eEEEEECCCCCCcccchHHHHHHHH--HHH-hcCCCCEEEEEEcCCCCCCCHHH---------HHHHHHHHHHhchhhhc
Confidence 457888899866532 222221 011 123677888885543 332110 012222222
Q ss_pred ccEEEEccCCCCCCC
Q 027979 111 ADVVILNKVDLVSPE 125 (216)
Q Consensus 111 AD~IvlnK~D~v~~~ 125 (216)
-=++|+||+|+.+++
T Consensus 153 ~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 153 KTLLVLTHAQFSPPD 167 (262)
T ss_dssp GEEEEEECTTCCCST
T ss_pred CEEEEEeCcccCCCC
Confidence 126889999997543
No 201
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=52.65 E-value=56 Score=25.25 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccch
Q 027979 30 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL 88 (216)
Q Consensus 30 l~~~L~~l~~~~~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~ 88 (216)
+...|..+.. ..+|+|||.+.+...+. ....+. .-+.+|.++++...
T Consensus 102 ~~~~l~~l~~--~~yD~viiD~p~~~~~~-~~~~l~---------~ad~vi~v~~~~~~ 148 (260)
T 3q9l_A 102 VAKVLDDLKA--MDFEFIVCDSPAGIETG-ALMALY---------FADEAIITTNPEVS 148 (260)
T ss_dssp HHHHHHHHHH--TTCSEEEEECCSSSSHH-HHHHHH---------TCSEEEEEECSSHH
T ss_pred HHHHHHHHhc--cCCCEEEEcCCCCCCHH-HHHHHH---------hCCEEEEEecCChh
Confidence 4444555432 26999999998765442 222221 24568899988754
No 202
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=52.64 E-value=3.7 Score=30.42 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=9.6
Q ss_pred eeccEEEEEcccch
Q 027979 75 RLDSIITVVDAKNL 88 (216)
Q Consensus 75 ~l~~vI~vVDa~~~ 88 (216)
..+.++.|+|+...
T Consensus 83 ~ad~~i~v~D~~~~ 96 (172)
T 2gj8_A 83 QADRVLFMVDGTTT 96 (172)
T ss_dssp TCSEEEEEEETTTC
T ss_pred hCCEEEEEEECCCC
Confidence 34677888888653
No 203
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=52.34 E-value=27 Score=28.67 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=44.7
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEccCC
Q 027979 42 ERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 120 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P~-~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~IvlnK~D 120 (216)
.++|+|||-|+|..... ..+..+. ..+. ...-+.++.|+|+.+-...+..... .+ ..+ .-.-||+||.|
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~--~~l~-~~~~~~~~lVl~at~~~~~~~~~~~--~~----~~l-~~~giVltk~D 250 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELK--ETIP-FESSIQSFLVLSATAKYEDMKHIVK--RF----SSV-PVNQYIFTKID 250 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHH--HHSC-CCTTEEEEEEEETTBCHHHHHHHTT--TT----SSS-CCCEEEEECTT
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHH--HHHh-hcCCCeEEEEEECCCCHHHHHHHHH--HH----hcC-CCCEEEEeCCC
Confidence 46899999999986432 2222221 0011 1123457889998765443332100 01 112 23678899999
Q ss_pred CCCCCCccchHHHHHHHHHhhC
Q 027979 121 LVSPERSGDSLDELEKEIHEIN 142 (216)
Q Consensus 121 ~v~~~~~~~~l~~i~~~l~~lN 142 (216)
..... ..+.+.+...+
T Consensus 251 ~~~~~------g~~~~~~~~~~ 266 (296)
T 2px0_A 251 ETTSL------GSVFNILAESK 266 (296)
T ss_dssp TCSCC------HHHHHHHHTCS
T ss_pred cccch------hHHHHHHHHHC
Confidence 76432 34445555443
No 204
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=51.18 E-value=16 Score=33.02 Aligned_cols=64 Identities=22% Similarity=0.175 Sum_probs=38.4
Q ss_pred CEEEEecCCCCCc-HHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---cEEEEccCC
Q 027979 45 DHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---DVVILNKVD 120 (216)
Q Consensus 45 d~IiIE~sG~a~P-~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---D~IvlnK~D 120 (216)
..=||=|.|=.|= .++.++|. -+|+.|.||||......-. ..+.+|.... =+++|||+|
T Consensus 101 ~iNlIDTPGHvDF~~Ev~raL~---------~~DgAvlVvda~~GV~~qT--------~~v~~~a~~~~lp~i~fINK~D 163 (548)
T 3vqt_A 101 VVNLLDTPGHQDFSEDTYRVLT---------AVDSALVVIDAAKGVEAQT--------RKLMDVCRMRATPVMTFVNKMD 163 (548)
T ss_dssp EEEEECCCCGGGCSHHHHHHHH---------SCSEEEEEEETTTBSCHHH--------HHHHHHHHHTTCCEEEEEECTT
T ss_pred EEEEEeCCCcHHHHHHHHHHHH---------hcCceEEEeecCCCccccc--------HHHHHHHHHhCCceEEEEeccc
Confidence 3446777777654 34445543 4788999999975432110 1122444333 368999999
Q ss_pred CCCCC
Q 027979 121 LVSPE 125 (216)
Q Consensus 121 ~v~~~ 125 (216)
+...+
T Consensus 164 r~~ad 168 (548)
T 3vqt_A 164 REALH 168 (548)
T ss_dssp SCCCC
T ss_pred chhcc
Confidence 97754
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=50.92 E-value=22 Score=33.05 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=37.0
Q ss_pred EEecCCCCCc-HHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh---hccEEEEccCCCCC
Q 027979 48 LLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVDLVS 123 (216)
Q Consensus 48 iIE~sG~a~P-~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~---~AD~IvlnK~D~v~ 123 (216)
||=|.|=.|= .++..+|. -+|+.|.||||......-. ..+.+|.. .-=+++|||+|+..
T Consensus 89 lIDTPGHvDF~~Ev~~aLr---------~~DgavlvVDaveGV~~qT--------~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLR---------VLDGAVVVFCGTSGVEPQS--------ETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp EECCCSCTTCHHHHHHHHH---------HCSEEEEEEETTTCSCHHH--------HHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred EEeCCCCcccHHHHHHHHH---------HhCeEEEEEECCCCCchhH--------HHHHHHHHHcCCCeEEEEccccccC
Confidence 5788887764 34444543 3678999999975331100 11223333 34489999999976
Q ss_pred CC
Q 027979 124 PE 125 (216)
Q Consensus 124 ~~ 125 (216)
.+
T Consensus 152 a~ 153 (709)
T 4fn5_A 152 AN 153 (709)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 206
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=50.09 E-value=52 Score=28.19 Aligned_cols=42 Identities=24% Similarity=0.244 Sum_probs=18.5
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccc
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN 87 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~ 87 (216)
...++-+.|+.....--+.+. +..+...-..+.++.|+|+..
T Consensus 72 ~i~lvDtpG~~~~a~~~~~l~-~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 72 PVKMVDVAGLVPGAHEGRGLG-NKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp EEEEEECC----------------CCCSSTTCSEEEEEEETTC
T ss_pred EEEEEECCCcccchhhhhhHH-HHHHHHHhcCCEEEEEEeccc
Confidence 366888888854322111111 111222235678999999976
No 207
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=47.97 E-value=12 Score=27.98 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=31.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh------ccEEEEc
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF------ADVVILN 117 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~------AD~Ivln 117 (216)
....|+.+.|...-..+... ..-..+.+|.|+|+.+.... .. ...+..++.. -=+||+|
T Consensus 82 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~-~~------~~~~~~~i~~~~~~~~p~ilv~n 146 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTITSS--------YYRGAHGIIVVYDVTDQESF-NN------VKQWLQEIDRYASENVNKLLVGN 146 (199)
T ss_dssp EEEEEECCTTCTTCCCCSCC----------CCCSEEEECC-CCCSHHH-HH------HHHHHHHHHSCC-CCSEEEEC-C
T ss_pred EEEEEEECCCcHhHHHHHHH--------HhhcCCEEEEEEECCCHHHH-HH------HHHHHHHHHHhccCCCCEEEEEE
Confidence 34567788885322211110 11235678889998764321 11 1122333322 1267789
Q ss_pred cCCCCCCC
Q 027979 118 KVDLVSPE 125 (216)
Q Consensus 118 K~D~v~~~ 125 (216)
|+|+.+..
T Consensus 147 K~Dl~~~~ 154 (199)
T 3l0i_B 147 KCDLTTKK 154 (199)
T ss_dssp CSSCC--C
T ss_pred CccCCccc
Confidence 99997653
No 208
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=47.47 E-value=21 Score=35.72 Aligned_cols=94 Identities=20% Similarity=0.178 Sum_probs=47.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHH-HHhhcccCCChhHHHHHHhhcc-EEEEccCCC
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF-QIDKYRHLSSYPEAIHQIAFAD-VVILNKVDL 121 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~-~l~~~~~~~~~~~~~~QI~~AD-~IvlnK~D~ 121 (216)
..+.||.|.|-.+= ..... ...-..+.+|.|||+..-.. +... +-....+...-. +|++||+|+
T Consensus 359 ~kI~IIDTPGHedF---~~~mi-----~gas~AD~aILVVDAtdGv~~QTrE------hL~ll~~lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 359 RHYAHVDCPGHADY---VKNMI-----TGAAQMDGAILVVAATDGPMPQTRE------HILLGRQVGVPYIIVFLNKCDM 424 (1289)
T ss_dssp CEEEEEECCCHHHH---HHHHH-----HTSCCCSEEEEEEETTTCSCTTHHH------HHHHHHHHTCSCEEEEEECCTT
T ss_pred EEEEEEECCChHHH---HHHHH-----HHHhhCCEEEEEEcCCccCcHHHHH------HHHHHHHcCCCeEEEEEeeccc
Confidence 34677788886532 11111 11225678899999975321 0000 001123333333 578999999
Q ss_pred CCCCCc-cchHHHHHHHHHhhCC---CCEEEEee
Q 027979 122 VSPERS-GDSLDELEKEIHEINS---LAHVIRSV 151 (216)
Q Consensus 122 v~~~~~-~~~l~~i~~~l~~lNP---~A~iv~~~ 151 (216)
.+..+. ....+++++.++.++- .+++++++
T Consensus 425 v~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvS 458 (1289)
T 3avx_A 425 VDDEELLELVEMEVRELLSQYDFPGDDTPIVRGS 458 (1289)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECC
T ss_pred ccchhhHHHHHHHHHHHHHhccccccceeEEEEE
Confidence 863210 0011345556665542 46777654
No 209
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=47.32 E-value=13 Score=31.66 Aligned_cols=13 Identities=46% Similarity=0.922 Sum_probs=11.4
Q ss_pred EEEEccCCCCCCC
Q 027979 113 VVILNKVDLVSPE 125 (216)
Q Consensus 113 ~IvlnK~D~v~~~ 125 (216)
+||+||+|+++++
T Consensus 164 iivlNK~DL~~~~ 176 (358)
T 2rcn_A 164 LIVLNKIDLLDDE 176 (358)
T ss_dssp EEEEECGGGCCHH
T ss_pred EEEEECccCCCch
Confidence 8999999999863
No 210
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=47.19 E-value=1.1e+02 Score=24.72 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=47.7
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEccCC
Q 027979 42 ERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 120 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P~-~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~IvlnK~D 120 (216)
.++|+|||-+.|..... ..+..+. .+...+..+.++.|+|+....+.+.. ...+...+ .-.-||+||.|
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~---~~~~~~~~~~~~lv~~~~~~~~~~~~------~~~~~~~~-~i~givlnk~d 248 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELA---RLKEVLGPDEVLLVLDAMTGQEALSV------ARAFDEKV-GVTGLVLTKLD 248 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGTHHHHHH------HHHHHHHT-CCCEEEEECGG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHH---HHhhhcCCCEEEEEEeCCCcHHHHHH------HHHHhhcC-CCCEEEEECCC
Confidence 36899999988765331 1222221 01122345677889998754332211 10111111 12568999999
Q ss_pred CCCCCCccchHHHHHHHHHhhCCCCEEEEeecC
Q 027979 121 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRC 153 (216)
Q Consensus 121 ~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~~ 153 (216)
..... ..+.+.+...+ .+|.....|
T Consensus 249 ~~~~~------g~~~~~~~~~~--~pi~~i~~g 273 (295)
T 1ls1_A 249 GDARG------GAALSARHVTG--KPIYFAGVS 273 (295)
T ss_dssp GCSSC------HHHHHHHHHHC--CCEEEEC--
T ss_pred CCccH------HHHHHHHHHHC--cCEEEEeCC
Confidence 75432 33445555544 456555554
No 211
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=46.78 E-value=1e+02 Score=24.03 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=41.2
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc----c-EEEE
Q 027979 42 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA----D-VVIL 116 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A----D-~Ivl 116 (216)
..+|+|||.+.+...+. ....+. .-+.+|.++.+...... . ...+.+.++.. . .+|+
T Consensus 143 ~~yD~viiD~pp~~~~~-~~~~l~---------~aD~vivv~~~~~~s~~--~------~~~~~~~l~~~~~~~~~~vv~ 204 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDVT-LKNALL---------CSDYVIIPMTAEKWAVE--S------LDLFNFFVRKLNLFLPIFLII 204 (267)
T ss_dssp TTCSEEEEEECSSCSHH-HHHHHT---------TCSEEEEEEESCTTHHH--H------HHHHHHHHHTTTCCCCEEEEE
T ss_pred cCCCEEEEECcCCccHH-HHHHHH---------HCCeEEEEeCCChHHHH--H------HHHHHHHHHHHhccCCEEEEE
Confidence 47999999998866443 222221 13568888888654321 1 11223333322 1 4899
Q ss_pred ccCCCCCCCCccchHHHHHHHHHh
Q 027979 117 NKVDLVSPERSGDSLDELEKEIHE 140 (216)
Q Consensus 117 nK~D~v~~~~~~~~l~~i~~~l~~ 140 (216)
||...-... +++.+.+++
T Consensus 205 N~~~~~~~~------~~~~~~l~~ 222 (267)
T 3k9g_A 205 TRFKKNRTH------KTLFEILKT 222 (267)
T ss_dssp EEECTTCSC------CHHHHHHTT
T ss_pred ecccCcchH------HHHHHHHhc
Confidence 998543322 445566654
No 212
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=46.44 E-value=11 Score=34.80 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=39.4
Q ss_pred CEEEEecCCCCCc-HHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---ccEEEEccCC
Q 027979 45 DHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---ADVVILNKVD 120 (216)
Q Consensus 45 d~IiIE~sG~a~P-~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---AD~IvlnK~D 120 (216)
..=||=|.|=.|= .++.+.|. -+|+.|.||||......- -....+|... -=++++||+|
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~---------~~DgavlVVDa~~GV~~q--------T~~v~~~a~~~~lp~i~~INKmD 130 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLS---------VLDGAILLISAKDGVQAQ--------TRILFHALRKMGIPTIFFINKID 130 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHT---------TCSEEECCEESSCTTCSH--------HHHHHHHHHHHTCSCEECCEECC
T ss_pred EEEEEECCCcHHHHHHHHHHHH---------HhCEEEEEEeCCCCCcHH--------HHHHHHHHHHcCCCeEEEEeccc
Confidence 4457888887764 34444442 368899999997543110 0112334333 3489999999
Q ss_pred CCCCC
Q 027979 121 LVSPE 125 (216)
Q Consensus 121 ~v~~~ 125 (216)
+...+
T Consensus 131 r~~a~ 135 (638)
T 3j25_A 131 QNGID 135 (638)
T ss_dssp SSSCC
T ss_pred cccCC
Confidence 97764
No 213
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=45.12 E-value=34 Score=28.82 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=23.9
Q ss_pred eccEEEEEcccch-HHHHhhcccCCChhHHHHHHhh--cc---EEEEccCCCCCCC
Q 027979 76 LDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIAF--AD---VVILNKVDLVSPE 125 (216)
Q Consensus 76 l~~vI~vVDa~~~-~~~l~~~~~~~~~~~~~~QI~~--AD---~IvlnK~D~v~~~ 125 (216)
.+++|.|+|...- ...+.. ......++.. .+ +|+.||+|+.+++
T Consensus 73 a~~~IlV~Ditd~~~~~~~~------l~~~l~~~~~~~~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 73 VGALVYVIDSQDEYINAITN------LAMIIEYAYKVNPSINIEVLIHKVDGLSED 122 (331)
T ss_dssp CSEEEEECCCSSCTTHHHHH------HHHHHHHHHHHCTTCEEEEECCCCCSSCSH
T ss_pred CCEEEEEEECCchHHHHHHH------HHHHHHHHhhcCCCCcEEEEEECcccCchh
Confidence 4578999998762 221111 1112222221 12 5667999998764
No 214
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=44.73 E-value=4.1 Score=31.03 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=33.8
Q ss_pred CCc----EEeecchhHH--------HHHHHHHHhcC--CCCEEEEecCCCCCcHHHHHHhhc---CcccccceeeccEEE
Q 027979 19 NGC----ICCTVKHSLV--------QALEQLVQRKE--RLDHILLETTGLANPAPLASVLWL---DDQLESAVRLDSIIT 81 (216)
Q Consensus 19 ~GC----iCCsl~~dl~--------~~L~~l~~~~~--~~d~IiIE~sG~a~P~~i~~~l~~---~~~l~~~~~l~~vI~ 81 (216)
.|| +||..+..+. ..|.+++.+.. ++|+++||+.+-. +.+.+..+.. .+.+.. ...+++|+
T Consensus 62 ~G~~~v~i~~~~~~~~~~~~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~-~~pki~v~~~~~~~~~~~~-~~~~~i~a 139 (174)
T 1np6_A 62 AGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHE-EIAKIVLFRDGAGHRPEEL-VIDRHVIA 139 (174)
T ss_dssp HTCSEEEEECSSEEEEEEECSSSCCCCHHHHHHHSCGGGCSEEEEESCSSC-CSEEEEEECTTSSCCGGGC-CCCTTEEE
T ss_pred CCcceeecccchhheeeeeccCCchhhHHHHHHhcCCCcchHHHHHHHhhc-CCCEEEEEecccCCcccCc-cCCCCEEE
Confidence 688 8997653221 35666655322 3599999997753 4343333211 111211 02456777
Q ss_pred EE
Q 027979 82 VV 83 (216)
Q Consensus 82 vV 83 (216)
|+
T Consensus 140 v~ 141 (174)
T 1np6_A 140 VA 141 (174)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 215
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=43.43 E-value=1.1e+02 Score=23.32 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=38.2
Q ss_pred CCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhcc------EEEE
Q 027979 43 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD------VVIL 116 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD------~Ivl 116 (216)
.+|+|||.+.+...+... ..+. .-+.+|.++.+...... . ...+.+.+.... .+|+
T Consensus 118 ~yD~viiD~p~~~~~~~~-~~l~---------~ad~viiv~~~~~~~~~--~------~~~~~~~l~~~~~~~~~~~~v~ 179 (245)
T 3ea0_A 118 FYDYIIVDFGASIDHVGV-WVLE---------HLDELCIVTTPSLQSLR--R------AGQLLKLCKEFEKPISRIEIIL 179 (245)
T ss_dssp HCSEEEEEEESSCCTTHH-HHGG---------GCSEEEEEECSSHHHHH--H------HHHHHHHHHTCSSCCSCEEEEE
T ss_pred hCCEEEEeCCCCCchHHH-HHHH---------HCCEEEEEecCcHHHHH--H------HHHHHHHHHHhCCCccceEEEE
Confidence 589999999887655322 2221 23568889988754321 1 223344554433 4899
Q ss_pred ccCCCCCC
Q 027979 117 NKVDLVSP 124 (216)
Q Consensus 117 nK~D~v~~ 124 (216)
||.+.-..
T Consensus 180 N~~~~~~~ 187 (245)
T 3ea0_A 180 NRADTNSR 187 (245)
T ss_dssp ESTTSCTT
T ss_pred ecCCCCCC
Confidence 99986443
No 216
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=43.12 E-value=49 Score=26.57 Aligned_cols=44 Identities=9% Similarity=0.015 Sum_probs=24.8
Q ss_pred eeccEEEEEcccchHHHHhhcccCCChhHHHHHHh-----hccEEEEccCCCCCC
Q 027979 75 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-----FADVVILNKVDLVSP 124 (216)
Q Consensus 75 ~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~-----~AD~IvlnK~D~v~~ 124 (216)
..+.+|.|+|+..-...-.- ...+...+. .-=++|+||+|+.+.
T Consensus 226 ~~d~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 226 QTDVFLICFSLVSPASFHHV------RAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp TCSEEEEEEETTCHHHHHHH------HHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred CCCEEEEEEeCCCHHHHHHH------HHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 35778999999875432110 001122222 123678899999764
No 217
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=40.90 E-value=22 Score=30.94 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=39.1
Q ss_pred eeccEEEEEccc-chHHHHhhcccCCChhHHH----HHHhhccEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEE
Q 027979 75 RLDSIITVVDAK-NLLFQIDKYRHLSSYPEAI----HQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 149 (216)
Q Consensus 75 ~l~~vI~vVDa~-~~~~~l~~~~~~~~~~~~~----~QI~~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~ 149 (216)
+.+.++.++|.. .....+... ..++. .-.....++++||+|+.+.. .++.+.+.++.. ..+++.
T Consensus 235 ra~~lL~vvDls~~~~~~ls~g-----~~el~~la~aL~~~P~ILVlNKlDl~~~~----~~~~l~~~l~~~--g~~vi~ 303 (416)
T 1udx_A 235 RTRVLLYVLDAADEPLKTLETL-----RKEVGAYDPALLRRPSLVALNKVDLLEEE----AVKALADALARE--GLAVLP 303 (416)
T ss_dssp SSSEEEEEEETTSCHHHHHHHH-----HHHHHHHCHHHHHSCEEEEEECCTTSCHH----HHHHHHHHHHTT--TSCEEE
T ss_pred HHHhhhEEeCCccCCHHHHHHH-----HHHHHHHhHHhhcCCEEEEEECCChhhHH----HHHHHHHHHHhc--CCeEEE
Confidence 356789999985 222222110 01110 11234579999999997641 345555555433 345554
Q ss_pred ee-cCCCChhhhh
Q 027979 150 SV-RCQVDLSEVL 161 (216)
Q Consensus 150 ~~-~~~v~~~~l~ 161 (216)
++ ...-.++.++
T Consensus 304 iSA~~g~gi~eL~ 316 (416)
T 1udx_A 304 VSALTGAGLPALK 316 (416)
T ss_dssp CCTTTCTTHHHHH
T ss_pred EECCCccCHHHHH
Confidence 33 2233444444
No 218
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=35.71 E-value=19 Score=34.32 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=38.4
Q ss_pred CCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh---hccEEEEccC
Q 027979 43 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKV 119 (216)
Q Consensus 43 ~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~---~AD~IvlnK~ 119 (216)
....-||-|.|..+=....... .-..+++|.|+|+......-. . ....|+. ..=++++||+
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~--------l~~aD~ailVvDa~~g~~~qt-------~-~~~~~~~~~~~p~ilviNK~ 160 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAA--------LRVTDGALVVVDTIEGVCVQT-------E-TVLRQALGERIKPVVVINKV 160 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHH--------HHTCSEEEEEEETTTBSCHHH-------H-HHHHHHHHTTCEEEEEEECH
T ss_pred CceEEEEECcCchhhHHHHHHH--------HHhCCEEEEEEeCCCCCCHHH-------H-HHHHHHHHcCCCeEEEEECC
Confidence 3456789999998754333221 123678999999986421110 0 1122322 2347899999
Q ss_pred CCCC
Q 027979 120 DLVS 123 (216)
Q Consensus 120 D~v~ 123 (216)
|+..
T Consensus 161 D~~~ 164 (842)
T 1n0u_A 161 DRAL 164 (842)
T ss_dssp HHHH
T ss_pred Ccch
Confidence 9873
No 219
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=34.82 E-value=1.4e+02 Score=22.39 Aligned_cols=78 Identities=10% Similarity=0.093 Sum_probs=44.4
Q ss_pred CCCCEEEEecCCC-CCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---c-cEEEE
Q 027979 42 ERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---A-DVVIL 116 (216)
Q Consensus 42 ~~~d~IiIE~sG~-a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---A-D~Ivl 116 (216)
..+|+|||.+.|. ..+... ..+. .-+.+|.++.+....-. . ...+.+.+.. . =.+|+
T Consensus 66 ~~yD~viiD~p~~~~~~~~~-~~l~---------~aD~viiv~~~~~~~~~--~------~~~~~~~l~~~~~~~~~vv~ 127 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDEDLE-ALAD---------GCDLLVIPSTPDALALD--A------LMLTIETLQKLGNNRFRILL 127 (209)
T ss_dssp GGCSEEEEEEECCCSSSHHH-HHHH---------TSSEEEEEECSSHHHHH--H------HHHHHHHHHHTCSSSEEEEE
T ss_pred hcCCEEEEeCCCCcCcHHHH-HHHH---------HCCEEEEEecCCchhHH--H------HHHHHHHHHhccCCCEEEEE
Confidence 3689999999987 655322 2221 12457888888754321 1 1122233322 1 24889
Q ss_pred ccCCCCC-CCCccchHHHHHHHHHhhC
Q 027979 117 NKVDLVS-PERSGDSLDELEKEIHEIN 142 (216)
Q Consensus 117 nK~D~v~-~~~~~~~l~~i~~~l~~lN 142 (216)
||.+.-. . ..+++.+.+++++
T Consensus 128 N~~~~~~~~-----~~~~~~~~l~~~g 149 (209)
T 3cwq_A 128 TIIPPYPSK-----DGDEARQLLTTAG 149 (209)
T ss_dssp CSBCCTTSC-----HHHHHHHHHHHTT
T ss_pred EecCCccch-----HHHHHHHHHHHcC
Confidence 9998754 2 2356667777643
No 220
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=33.06 E-value=47 Score=24.25 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=21.1
Q ss_pred cEEEEEcccchHHHHhhcccCCChhHHHHHH----hhccEEEE-ccCCCCCC
Q 027979 78 SIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVIL-NKVDLVSP 124 (216)
Q Consensus 78 ~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI----~~AD~Ivl-nK~D~v~~ 124 (216)
.++.|+|...-...+.. ......++ ...-+|++ ||+|+.+.
T Consensus 82 ~~i~v~d~~~~~~s~~~------~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDA------MKPWLFNIKARASSSPVILVGTHLDVSDE 127 (184)
T ss_dssp EEEEEEEGGGCHHHHHT------HHHHHHHHHHHCTTCEEEEEEECGGGCCH
T ss_pred EEEEEEeCCcchhHHHH------HHHHHHHHHhhCCCCcEEEEEECCCcccc
Confidence 45677887664322222 22222222 23445555 99999764
No 221
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=32.83 E-value=22 Score=28.48 Aligned_cols=43 Identities=19% Similarity=0.340 Sum_probs=24.0
Q ss_pred eeccEEEEEcccc-hHHHHhhcccCCChhHHHHHHh--hccEEEEccCCCCCCC
Q 027979 75 RLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPE 125 (216)
Q Consensus 75 ~l~~vI~vVDa~~-~~~~l~~~~~~~~~~~~~~QI~--~AD~IvlnK~D~v~~~ 125 (216)
+++.++.++|+.. -....+ ..+.+++. .-=++|+||+|+.+.+
T Consensus 115 r~~~~l~~i~~~~~~~~~~d--------~~~l~~l~~~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 115 RVQCCLYFIAPSGHGLKPLD--------IEFMKRLHEKVNIIPLIAKADTLTPE 160 (274)
T ss_dssp CCCEEEEEECSCCSSCCHHH--------HHHHHHHTTTSCEEEEESSGGGSCHH
T ss_pred ceeEEEEEecCCCCCCCHHH--------HHHHHHHhccCCEEEEEeccCCCCHH
Confidence 3556788887654 111111 12334444 2336788999998764
No 222
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=31.22 E-value=1.6e+02 Score=23.32 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=24.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccch
Q 027979 42 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL 88 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~ 88 (216)
..+|+|||.+.+....... ..+. .-+.+|.++.+..+
T Consensus 153 ~~yD~IiiD~pp~~~~~~~-~~l~---------~aD~viiv~~~~~~ 189 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVYTN-NAIV---------ASDYVMIPLQAEEE 189 (298)
T ss_dssp GGCSEEEEEECSSCSHHHH-HHHH---------HCSEEEEEECGGGC
T ss_pred cCCCEEEEECCCCccHHHH-HHHH---------HCCeEEEEecCcHH
Confidence 4699999999987654322 2221 24568888888754
No 223
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=29.94 E-value=1.5e+02 Score=20.99 Aligned_cols=81 Identities=9% Similarity=0.029 Sum_probs=49.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhccEEEEccCCCCC
Q 027979 44 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 123 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD~IvlnK~D~v~ 123 (216)
++.=+|+|+|. -+...++.+. ....-.+||.+.|+..--+.+.+ .+.+.+..|....+.|.+. .
T Consensus 25 ~~~~iI~t~Gs-i~~~~l~~I~------~~~~~r~VIi~TD~D~~GekIRk--------~i~~~lp~~~hafi~r~~~-g 88 (119)
T 2fcj_A 25 EPVVIVCTNGT-ISDARLEELA------DELEGYDVYLLADADEAGEKLRR--------QFRRMFPEAEHLYIDRAYR-E 88 (119)
T ss_dssp SCCEEEECCSC-CCHHHHHHHH------HHTTTSEEEEECCSSHHHHHHHH--------HHHHHCTTSEEECCCTTTC-S
T ss_pred CCCCEEEeCCc-cCHHHHHHHH------HHhcCCCEEEEECCCccHHHHHH--------HHHHHCCCCcEEeccCCcc-C
Confidence 46679999998 5555544432 22335678888898755444322 2345667788888888765 3
Q ss_pred CCCccchHHHHHHHHHhhC
Q 027979 124 PERSGDSLDELEKEIHEIN 142 (216)
Q Consensus 124 ~~~~~~~l~~i~~~l~~lN 142 (216)
-++ ...+.+.+.|+...
T Consensus 89 VE~--a~~~~I~~aL~~~~ 105 (119)
T 2fcj_A 89 VAA--APIWHLAQVLLRAR 105 (119)
T ss_dssp TTT--SCHHHHHHHHHHTT
T ss_pred ccc--CCHHHHHHHHHhcc
Confidence 222 24567777776543
No 224
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=29.19 E-value=41 Score=25.47 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCC
Q 027979 30 LVQALEQLVQRKERLDHILLETTGLA 55 (216)
Q Consensus 30 l~~~L~~l~~~~~~~d~IiIE~sG~a 55 (216)
+...|.++. .++|+||||+.|-.
T Consensus 98 l~~~l~~l~---~~yD~viID~p~~l 120 (224)
T 1byi_A 98 MSAGLRALE---QQADWVLVEGAGGW 120 (224)
T ss_dssp HHHHHHHHH---TTCSEEEEECSSST
T ss_pred HHHHHHHHH---HhCCEEEEEcCCcc
Confidence 334444442 46999999998543
No 225
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=29.09 E-value=33 Score=29.59 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=22.7
Q ss_pred eccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---cEEEEccCCCCC
Q 027979 76 LDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---DVVILNKVDLVS 123 (216)
Q Consensus 76 l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---D~IvlnK~D~v~ 123 (216)
.+.++.|+|+..-....+. .+.+.+... =++++||+|+..
T Consensus 82 ad~il~V~D~~~~~~~~d~--------~i~~~l~~~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDE--------SLADFLRKSTVDTILVANKAENLR 124 (439)
T ss_dssp CSEEEEEEETTTCCCHHHH--------HHHHHHHHHTCCEEEEEESCCSHH
T ss_pred CCEEEEEEECCCCCCHHHH--------HHHHHHHHcCCCEEEEEeCCCCcc
Confidence 5778999998753211111 122233322 367889999853
No 226
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=27.54 E-value=35 Score=30.42 Aligned_cols=64 Identities=28% Similarity=0.310 Sum_probs=34.2
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---cEEEEccCCC
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---DVVILNKVDL 121 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---D~IvlnK~D~ 121 (216)
...|+-|.|-.+-..+ .....-..+.+|.|+|+..-... ... +...++... =+|++||+|+
T Consensus 52 ~i~~iDTPGhe~f~~~--------~~~~~~~aD~aILVVda~~g~~~-------qT~-e~l~~~~~~~vPiIVviNKiDl 115 (501)
T 1zo1_I 52 MITFLDTPGHAAFTSM--------RARGAQATDIVVLVVAADDGVMP-------QTI-EAIQHAKAAQVPVVVAVNKIDK 115 (501)
T ss_dssp CCCEECCCTTTCCTTS--------BCSSSBSCSSEEEEEETTTBSCT-------TTH-HHHHHHHHTTCCEEEEEECSSS
T ss_pred EEEEEECCCcHHHHHH--------HHHHHhhCCEEEEEeecccCccH-------HHH-HHHHHHHhcCceEEEEEEeccc
Confidence 4567788886432211 11122345778999998752110 011 222333333 3788899999
Q ss_pred CCC
Q 027979 122 VSP 124 (216)
Q Consensus 122 v~~ 124 (216)
.+.
T Consensus 116 ~~~ 118 (501)
T 1zo1_I 116 PEA 118 (501)
T ss_dssp STT
T ss_pred ccc
Confidence 764
No 227
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=27.13 E-value=1.8e+02 Score=21.15 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=33.6
Q ss_pred ccEEEEEcccchHHHHhhcccCCChhHHHHHHhh---c---cEEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEe
Q 027979 77 DSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF---A---DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS 150 (216)
Q Consensus 77 ~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~---A---D~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~ 150 (216)
+.++.|+|.......- + ...+...+.. . =++++||+|+.+.... ..+..++..+ .|...++.+
T Consensus 79 ~~~i~v~d~~~~~s~~-~------~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~--~~~~a~~l~~--~~~~~~~d~ 147 (199)
T 2f9l_A 79 VGALLVYDIAKHLTYE-N------VERWLKELRDHADSNIVIMLVGNKSDLRHLRAV--PTDEARAFAE--KNNLSFIET 147 (199)
T ss_dssp SEEEEEEETTCHHHHH-T------HHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHH--HTTCEEEEC
T ss_pred CEEEEEEECcCHHHHH-H------HHHHHHHHHHhcCCCCeEEEEEECcccccccCc--CHHHHHHHHH--HcCCeEEEE
Confidence 5578899987654321 1 1112222221 1 2567899999754321 2344444444 366777764
Q ss_pred e
Q 027979 151 V 151 (216)
Q Consensus 151 ~ 151 (216)
+
T Consensus 148 S 148 (199)
T 2f9l_A 148 S 148 (199)
T ss_dssp C
T ss_pred e
Confidence 3
No 228
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=26.93 E-value=22 Score=30.68 Aligned_cols=72 Identities=21% Similarity=0.239 Sum_probs=29.9
Q ss_pred CCEEEEecCCCCCcH-HHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---cEEEEccC
Q 027979 44 LDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---DVVILNKV 119 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~-~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---D~IvlnK~ 119 (216)
....++-|.|..... .+.+.+. .......-..+.+|.|+|+..-....+. ++.+.+... =++++||+
T Consensus 51 ~~~~l~DT~G~~~~~~~~~~~~~-~~~~~~~~~ad~il~vvD~~~~~~~~d~--------~~~~~l~~~~~pvilv~NK~ 121 (436)
T 2hjg_A 51 YDFNLIDTGGIDIGDEPFLAQIR-QQAEIAMDEADVIIFMVNGREGVTAADE--------EVAKILYRTKKPVVLAVNKL 121 (436)
T ss_dssp SCCEEEC---------CHHHHHH-HHHHHHHHHCSEEEEEEETTTCSCHHHH--------HHHHHHTTCCSCEEEEEECC
T ss_pred ceEEEEECCCCCCcchhHHHHHH-HHHHHHHHhCCEEEEEEeCCCCCCHHHH--------HHHHHHHHcCCCEEEEEECc
Confidence 467889999985221 1111110 0000011235678999999753322111 122333333 36788999
Q ss_pred CCCCC
Q 027979 120 DLVSP 124 (216)
Q Consensus 120 D~v~~ 124 (216)
|+.+.
T Consensus 122 D~~~~ 126 (436)
T 2hjg_A 122 DNTEM 126 (436)
T ss_dssp CC---
T ss_pred cCccc
Confidence 98753
No 229
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=26.70 E-value=1.9e+02 Score=21.12 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=23.1
Q ss_pred EEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEeec-CCCChhhhhc
Q 027979 113 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVR-CQVDLSEVLN 162 (216)
Q Consensus 113 ~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~~~-~~v~~~~l~~ 162 (216)
+++.||+|+...... ..++.+...... ++++++++- .....+.++.
T Consensus 118 ilV~NK~Dl~~~r~v--~~~~~~~~a~~~--~~~~~e~SA~~g~~v~~lf~ 164 (192)
T 2cjw_A 118 ILVGNKSDLVRXREV--SVSEGRAXAVVF--DXKFIETSAAVQHNVKELFE 164 (192)
T ss_dssp EEEEECTTCGGGCCS--CHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHH
T ss_pred EEEEechhhhccccc--cHHHHHHHHHHh--CCceEEeccccCCCHHHHHH
Confidence 566799999753321 233333322333 356776543 2345555553
No 230
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=25.41 E-value=68 Score=29.16 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=35.6
Q ss_pred CEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---cEEEEccCCC
Q 027979 45 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---DVVILNKVDL 121 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---D~IvlnK~D~ 121 (216)
...|+-|.|-.+-..+. . ...-..+.+|.|+|+..-... .. + +...++... =++++||+|+
T Consensus 71 ~i~liDTPGhe~F~~~~-----~---r~~~~aD~aILVvDa~~Gv~~-qT------~-e~l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLR-----K---RGGALADLAILIVDINEGFKP-QT------Q-EALNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp EEEEECCCTTSCCTTSB-----C---SSSBSCSEEEEEEETTTCCCH-HH------H-HHHHHHHHTTCCEEEEEECGGG
T ss_pred CEEEEECCCcHHHHHHH-----H---HHHhhCCEEEEEEECCCCccH-hH------H-HHHHHHHHcCCeEEEEeccccc
Confidence 47888999975432111 0 112236789999999862110 00 1 122333333 3788999999
Q ss_pred CC
Q 027979 122 VS 123 (216)
Q Consensus 122 v~ 123 (216)
.+
T Consensus 135 ~~ 136 (594)
T 1g7s_A 135 IH 136 (594)
T ss_dssp ST
T ss_pred cc
Confidence 75
No 231
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=25.30 E-value=42 Score=27.00 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=16.1
Q ss_pred cCCCCEEEEecCCCCCcH
Q 027979 41 KERLDHILLETTGLANPA 58 (216)
Q Consensus 41 ~~~~d~IiIE~sG~a~P~ 58 (216)
+.+||.|++--.|+++|.
T Consensus 105 ~~~PdlllvDG~GiaHPR 122 (237)
T 3goc_A 105 PCPPGLIVCDGYGVAHPR 122 (237)
T ss_dssp SSCCSEEEEESCSSCSTT
T ss_pred CCCCCEEEEeCceeecCC
Confidence 357999999999999995
No 232
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=25.24 E-value=43 Score=27.09 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=16.1
Q ss_pred CCCCEEEEecCCCCCcHH
Q 027979 42 ERLDHILLETTGLANPAP 59 (216)
Q Consensus 42 ~~~d~IiIE~sG~a~P~~ 59 (216)
.+||.|++--.|+++|..
T Consensus 108 ~~PdlllvDG~GiaHPRr 125 (246)
T 3ga2_A 108 TEPDVFLFDGNGYLHYNH 125 (246)
T ss_dssp SCCSCEEEEBCSSSSTTS
T ss_pred CCCCEEEEcCcEEecCCC
Confidence 579999999999999953
No 233
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=25.13 E-value=24 Score=30.73 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCEEEEecCCCCCcH----HHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhc---cEEEE
Q 027979 44 LDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---DVVIL 116 (216)
Q Consensus 44 ~d~IiIE~sG~a~P~----~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~A---D~Ivl 116 (216)
....++-|.|+.... .-+.... ... .-..+.++.|+|+.......+. ++.+.+... =++++
T Consensus 71 ~~~~liDT~G~~~~~~~~~~~~~~~~-~~~---~~~ad~il~VvD~~~~~~~~d~--------~l~~~l~~~~~pvilV~ 138 (456)
T 4dcu_A 71 YDFNLIDTGGIDIGDEPFLAQIRQQA-EIA---MDEADVIIFMVNGREGVTAADE--------EVAKILYRTKKPVVLAV 138 (456)
T ss_dssp SCCEEECCCC------CCHHHHHHHH-HHH---HHHCSEEEEEEESSSCSCHHHH--------HHHHHHTTCCSCEEEEE
T ss_pred ceEEEEECCCCCCcchHHHHHHHHHH-Hhh---HhhCCEEEEEEeCCCCCChHHH--------HHHHHHHHcCCCEEEEE
Confidence 467888999975321 1111111 001 1135688999998763322211 223334333 36788
Q ss_pred ccCCCCCC
Q 027979 117 NKVDLVSP 124 (216)
Q Consensus 117 nK~D~v~~ 124 (216)
||+|+.+.
T Consensus 139 NK~D~~~~ 146 (456)
T 4dcu_A 139 NKLDNTEM 146 (456)
T ss_dssp ECC-----
T ss_pred ECccchhh
Confidence 99998754
No 234
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=25.09 E-value=95 Score=28.49 Aligned_cols=61 Identities=18% Similarity=0.154 Sum_probs=33.9
Q ss_pred CEEEEecCCCCCcHHHH-HHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHHHHHHh---hccEEEEccCC
Q 027979 45 DHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA---FADVVILNKVD 120 (216)
Q Consensus 45 d~IiIE~sG~a~P~~i~-~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~---~AD~IvlnK~D 120 (216)
...|+-|.|..+-.... ..+ -..+.++.|+|+....... ......++. ..=++++||+|
T Consensus 75 ~~nliDTpG~~~f~~~~~~~l---------~~ad~~ilVvD~~~g~~~q--------t~~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 75 RVFLLDAPGYGDFVGEIRGAL---------EAADAALVAVSAEAGVQVG--------TERAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp EEEEEECCCSGGGHHHHHHHH---------HHCSEEEEEEETTTCSCHH--------HHHHHHHHHHTTCCEEEEEECGG
T ss_pred EEEEEeCCCccchHHHHHHHH---------hhcCcEEEEEcCCcccchh--------HHHHHHHHHHccCCEEEEecCCc
Confidence 45667778876533222 221 1356789999986532211 012233333 34478899999
Q ss_pred CC
Q 027979 121 LV 122 (216)
Q Consensus 121 ~v 122 (216)
+.
T Consensus 138 ~~ 139 (665)
T 2dy1_A 138 KG 139 (665)
T ss_dssp GC
T ss_pred hh
Confidence 97
No 235
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=24.06 E-value=34 Score=29.03 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=11.7
Q ss_pred eeccEEEEEcccchH
Q 027979 75 RLDSIITVVDAKNLL 89 (216)
Q Consensus 75 ~l~~vI~vVDa~~~~ 89 (216)
..+++|.|+|.+.+.
T Consensus 224 ~~~~iIfv~dls~~d 238 (362)
T 1zcb_A 224 SVTSILFLVSSSEFD 238 (362)
T ss_dssp TCCEEEEEEETTCTT
T ss_pred CCCEEEEEEECcccc
Confidence 357889999998753
No 236
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=22.64 E-value=39 Score=28.51 Aligned_cols=15 Identities=20% Similarity=0.177 Sum_probs=11.8
Q ss_pred eeccEEEEEcccchH
Q 027979 75 RLDSIITVVDAKNLL 89 (216)
Q Consensus 75 ~l~~vI~vVDa~~~~ 89 (216)
..+++|.|+|.+.+.
T Consensus 216 ~a~~iIfV~dls~~d 230 (353)
T 1cip_A 216 GVTAIIFCVALSDYD 230 (353)
T ss_dssp TCSEEEEEEEGGGGG
T ss_pred cCCEEEEEEECcccc
Confidence 367889999998753
No 237
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=22.05 E-value=51 Score=27.72 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=10.7
Q ss_pred EEEEccCCCCCCC
Q 027979 113 VVILNKVDLVSPE 125 (216)
Q Consensus 113 ~IvlnK~D~v~~~ 125 (216)
++|+||+|+.+..
T Consensus 178 IlV~NK~Dl~~~~ 190 (361)
T 2qag_A 178 VPVIAKADTLTLK 190 (361)
T ss_dssp EEEEECCSSSCHH
T ss_pred EEEEECCCCCCHH
Confidence 6788999998764
No 238
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=21.40 E-value=2.4e+02 Score=20.44 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=19.9
Q ss_pred EEEEccCCCCCCCCccchHHHHHHHHHhhCCCCEEEEe
Q 027979 113 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS 150 (216)
Q Consensus 113 ~IvlnK~D~v~~~~~~~~l~~i~~~l~~lNP~A~iv~~ 150 (216)
++++||+|+.+.... ..+..++..+ +|...++.+
T Consensus 138 ~~v~nK~Dl~~~~~~--~~~~a~~l~~--~~~~~~ld~ 171 (191)
T 1oix_A 138 MLVGNKSDLRHLRAV--PTDEARAFAE--KNGLSFIET 171 (191)
T ss_dssp EEEEECGGGGGGCCS--CHHHHHHHHH--HTTCEEEEC
T ss_pred EEEEECccccccccc--CHHHHHHHHH--HcCCEEEEE
Confidence 678899998654321 2344444443 466667663
No 239
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.73 E-value=1.9e+02 Score=19.71 Aligned_cols=93 Identities=14% Similarity=0.266 Sum_probs=50.5
Q ss_pred ecchhHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHhhcCcccccceeeccEEEEEcccchHHHHhhcccCCChhHH
Q 027979 25 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 104 (216)
Q Consensus 25 sl~~dl~~~L~~l~~~~~~~d~IiIE~sG~a~P~~i~~~l~~~~~l~~~~~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~ 104 (216)
+..++......+++. +..|..=- +-.|.++.+.+. .+-..+.-.-++.|||-..|....- .+
T Consensus 9 stdeetlrkfkdiik-kngfkvrt-----vrspqelkdsie---elvkkynativvvvvddkewaekai---------rf 70 (134)
T 2l69_A 9 STDEETLRKFKDIIK-KNGFKVRT-----VRSPQELKDSIE---ELVKKYNATIVVVVVDDKEWAEKAI---------RF 70 (134)
T ss_dssp CCCHHHHHHHHHHHH-HTTCEEEE-----ECSHHHHHHHHH---HHTTCCCCEEEEEECSSHHHHHHHH---------HH
T ss_pred eCCHHHHHHHHHHHH-hcCceEEE-----ecCHHHHHHHHH---HHHHHhCCeEEEEEEccHHHHHHHH---------HH
Confidence 344555666677765 44554322 245777777652 3445556566788889877653221 12
Q ss_pred HHHHhhccEEEEccCCCCCCCCccchHHHHHHHHHhhC
Q 027979 105 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN 142 (216)
Q Consensus 105 ~~QI~~AD~IvlnK~D~v~~~~~~~~l~~i~~~l~~lN 142 (216)
+..+..-=+|++-.-|. ..++++.+.+++-.
T Consensus 71 vkslgaqvliiiydqdq-------nrleefsrevrrrg 101 (134)
T 2l69_A 71 VKSLGAQVLIIIYDQDQ-------NRLEEFSREVRRRG 101 (134)
T ss_dssp HHHHCCCCEEEEECSCH-------HHHHHHHHHHHHTT
T ss_pred HHhcCCeEEEEEEeCch-------hHHHHHHHHHHhcC
Confidence 34455445666654332 13555555565433
No 240
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=20.29 E-value=40 Score=30.36 Aligned_cols=42 Identities=29% Similarity=0.299 Sum_probs=24.4
Q ss_pred eeccEEEEEcccchHHHHhhcccCCChhHHHHHHhhcc---EEEEccCCCCCC
Q 027979 75 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD---VVILNKVDLVSP 124 (216)
Q Consensus 75 ~l~~vI~vVDa~~~~~~l~~~~~~~~~~~~~~QI~~AD---~IvlnK~D~v~~ 124 (216)
..+.+|.|+|+..-...- --+...++..+. +|++||+|+.+.
T Consensus 75 ~aD~vILVVDa~dg~~~q--------t~e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 75 VTDIVILVVAADDGVMKQ--------TVESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp SBSSCEEECBSSSCCCHH--------HHHHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred cCCEEEEEEECCCCccHH--------HHHHHHHHHHcCCcEEEEEeccccccc
Confidence 367889999997522110 011223333333 678899999764
Done!