BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027980
         (216 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LA9|A Chain A, Crystal Structure Of The Trimeric Autotransporter Adhesin
           Head Domain Bpaa From Burkholderia Pseudomallei, Iodide
           Phased
 pdb|3LAA|A Chain A, Crystal Structure Of The Trimeric Autotransporter Adhesin
           Head Domain Bpaa From Burkholderia Pseudomallei
          Length = 200

 Score = 31.6 bits (70), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 74  IGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGS----- 128
           IGP   A  D+  AI  G T +      + ++ G   GGF G   +G F   VG+     
Sbjct: 114 IGPNAVANVDYSVAIGSGATTSAAVPVASASVGGLTFGGFAGSAPIGVFS--VGAPGAER 171

Query: 129 HLGSWAGGRIGLMIYDVVNGVHF 151
            + + A GRI     D VNG   
Sbjct: 172 QITNVAAGRISAASTDAVNGSQL 194


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.140    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,441,505
Number of Sequences: 62578
Number of extensions: 218523
Number of successful extensions: 392
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 2
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)