BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027980
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A9A135|DNAK_NITMS Chaperone protein DnaK OS=Nitrosopumilus maritimus (strain SCM1)
GN=dnaK PE=3 SV=1
Length = 636
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 26 VERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFF 85
V+R + +I+KA+ DA LS++D K G L K+ +IG + +G D
Sbjct: 290 VDRCKP-SIQKALEDA---KLSNSDINKIVMIGGPTRIPLVKKFVSEVIGKEVESGVDPM 345
Query: 86 EAIYYGGTITEGFIRGTGT---LFGAYAGGFLGEERLG--RFGYLVGSHLGSWAGGRIGL 140
EA+ G I G I G T + LG E LG R + + + G++
Sbjct: 346 EAVAMGAAIQAGIIAGDVTSDIVLLDVTPLTLGIETLGGVREPLIERNTTIPTSKGKVFT 405
Query: 141 MIYDVVNGVHFLLQFVQSEESEAHD 165
D N + VQ E A D
Sbjct: 406 TAAD--NQTAVTIHVVQGERPMATD 428
>sp|P47344|Y098_MYCGE Uncharacterized protein MG098 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=MG098 PE=3 SV=1
Length = 477
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 73 IIGPII----AAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAG---------GFLGEERL 119
+ GPII AA DF I+ GG G++ G L G AG FL + L
Sbjct: 108 LFGPIIGIFSAATIDFLTVIFSGGVFNIGYVLG-AILTGMIAGILREVLISTSFLNNKTL 166
Query: 120 GRFGYLVGS 128
F YLV S
Sbjct: 167 SDFAYLVLS 175
>sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule OS=Arabidopsis thaliana GN=SE PE=1
SV=2
Length = 720
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 106 FGAYAGGFLGEERLGRFGY----LVGSHLG---SWAGGRIGLMIYDVVN-------GVHF 151
FG GG E GR GY G +G W GGR G D N G+
Sbjct: 140 FGYDHGGGYDREMGGRPGYGDERPHGRFMGRYQDWEGGRGGYG--DASNSGNPQRDGLMS 197
Query: 152 LLQFVQSEESEAHDAPVEEKFQDYEDSY-ANEAPSFWNSEASED 194
QF+Q E + + E ++Q+Y+ Y + +F+N+ ED
Sbjct: 198 YKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKEED 241
>sp|Q2MY41|PAT10_SOLTU Patatin-10 OS=Solanum tuberosum PE=2 SV=1
Length = 386
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 83 DFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLGSWAGGRIGLMI 142
D+F+ I GGT T G + T F + + F + G H+ +++G IG M
Sbjct: 68 DYFDVI--GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIFNYSGSIIGPM- 124
Query: 143 YDVVNGVHFLLQFVQSE--ESEAHDAPVEEKFQDYEDSYANEAPSFWNSEASEDSKASDS 200
YD +LLQ +Q + E+ H A E + D N+ F S ++ S D+
Sbjct: 125 YD----GKYLLQVLQEKLGETRVHQALTEVAISSF-DIKTNKPVIFTKSNLAK-SPELDA 178
Query: 201 SLYE 204
+Y+
Sbjct: 179 KMYD 182
>sp|Q2MY52|PATM2_SOLTU Patatin group M-2 OS=Solanum tuberosum PE=2 SV=1
Length = 386
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 83 DFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLGSWAGGRIGLMI 142
D+F+ I GGT T G + T F + + F + G H+ +++G IG M
Sbjct: 68 DYFDVI--GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIFNYSGSIIGPM- 124
Query: 143 YDVVNGVHFLLQFVQSE--ESEAHDAPVEEKFQDYEDSYANEAPSFWNSEASEDSKASDS 200
YD +LLQ +Q + E+ H A E + D N+ F S ++ S D+
Sbjct: 125 YD----GKYLLQVLQEKLGETRVHQALTEVAISSF-DIKTNKPVIFTKSNLAK-SPELDA 178
Query: 201 SLYE 204
+Y+
Sbjct: 179 KMYD 182
>sp|P11768|PATM1_SOLTU Patatin group M-1 OS=Solanum tuberosum PE=2 SV=1
Length = 386
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 83 DFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLGSWAGGRIGLMI 142
D+F+ I GGT T G + T F + + F + G H+ +++G IG M
Sbjct: 68 DYFDVI--GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIFNYSGSIIGPM- 124
Query: 143 YDVVNGVHFLLQFVQSE--ESEAHDAPVEEKFQDYEDSYANEAPSFWNSEASEDSKASDS 200
YD +LLQ +Q + E+ H A E + D N+ F S ++ S D+
Sbjct: 125 YD----GKYLLQVLQEKLGETRVHQALTEVAISSF-DIKTNKPVIFTKSNLAK-SPELDA 178
Query: 201 SLYE 204
+Y+
Sbjct: 179 KMYD 182
>sp|Q2MY37|PAT14_SOLTU Patatin-14 OS=Solanum tuberosum PE=2 SV=1
Length = 386
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 83 DFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLGSWAGGRIGLMI 142
D+F+ I GGT T G + T F + + F + G H+ +++G IG M
Sbjct: 68 DYFDVI--GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIFNYSGSIIGPM- 124
Query: 143 YDVVNGVHFLLQFVQSE--ESEAHDAPVEEKFQDYEDSYANEAPSFWNSEASEDSKASDS 200
YD +LLQ +Q + E+ H A E + D N+ F S ++ S D+
Sbjct: 125 YD----GKYLLQVLQEKLGETRVHQALTEVAISSF-DIKTNKPVIFTKSNLAK-SPELDA 178
Query: 201 SLYE 204
+Y+
Sbjct: 179 KMYD 182
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,562,973
Number of Sequences: 539616
Number of extensions: 3455995
Number of successful extensions: 9617
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 9520
Number of HSP's gapped (non-prelim): 128
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)