Query 027980
Match_columns 216
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 06:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027980.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027980hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1laxa_ c.94.1.1 (A:) D-maltod 73.8 1.8 0.00013 31.8 4.3 27 32-58 341-367 (369)
2 d1eu8a_ c.94.1.1 (A:) D-maltod 70.4 3 0.00022 30.7 4.8 32 32-63 374-405 (407)
3 d1txga1 a.100.1.6 (A:181-335) 57.8 13 0.00097 26.8 6.4 52 29-84 78-137 (155)
4 d1d8wa_ c.1.15.2 (A:) L-rhamno 57.6 4.3 0.00032 35.5 4.1 49 32-85 341-389 (416)
5 d1f0ya2 c.2.1.6 (A:12-203) Sho 53.9 4.5 0.00032 29.7 3.1 48 2-50 16-63 (192)
6 d1i9ga_ c.66.1.13 (A:) Probabl 47.2 2.7 0.0002 33.3 0.9 32 2-33 106-141 (264)
7 d2nn6h2 b.84.4.2 (H:25-72) Rib 46.9 1.8 0.00013 28.0 -0.1 12 95-106 12-23 (48)
8 d1ursa_ c.94.1.1 (A:) D-maltod 45.7 7 0.00051 28.4 3.0 26 36-61 341-366 (367)
9 d2icsa2 c.1.9.14 (A:55-321) Pu 44.2 7.7 0.00056 24.6 2.7 29 35-63 233-261 (267)
10 d1o12a2 c.1.9.10 (A:44-331) N- 42.5 12 0.00091 25.2 3.8 27 37-63 255-282 (288)
11 d1k78a1 a.4.1.5 (A:19-81) Pax- 40.9 12 0.0009 24.5 3.4 31 40-70 25-55 (63)
12 d2ap1a1 c.55.1.10 (A:118-303) 40.3 14 0.001 25.1 3.8 65 31-96 74-140 (186)
13 d1yrra2 c.1.9.10 (A:54-350) N- 40.3 15 0.0011 23.9 3.8 30 37-66 263-293 (297)
14 d1jxha_ c.72.1.2 (A:) 4-amino- 39.2 8.1 0.00059 29.5 2.6 35 32-66 213-247 (266)
15 d2gupa2 c.55.1.10 (A:115-289) 39.1 18 0.0013 24.6 4.2 53 44-97 69-123 (175)
16 d1y60a_ d.14.1.12 (A:) Formald 38.9 16 0.0012 28.3 4.3 42 29-70 85-144 (168)
17 d1vi9a_ c.72.1.5 (A:) Pyridoxa 37.3 29 0.0021 26.4 5.6 49 31-80 223-271 (288)
18 d2uubt1 a.7.6.1 (T:8-106) Ribo 36.9 18 0.0013 25.4 4.0 44 21-64 9-61 (99)
19 d1kyha_ c.72.1.4 (A:) Hypothet 35.4 32 0.0023 26.6 5.7 66 2-69 186-252 (275)
20 d1siqa1 a.29.3.1 (A:239-392) G 35.3 62 0.0045 22.1 7.6 50 26-77 61-110 (154)
21 d2q09a2 c.1.9.17 (A:66-366) Pr 34.6 17 0.0012 23.6 3.3 21 43-63 273-293 (301)
22 d1z6ra3 c.55.1.10 (A:211-406) 33.5 25 0.0018 24.3 4.3 50 46-96 85-136 (196)
23 d1y0pa2 c.3.1.4 (A:111-361,A:5 32.1 3.5 0.00026 30.2 -0.6 41 86-131 257-305 (308)
24 d1ub0a_ c.72.1.2 (A:) 4-amino- 31.6 24 0.0017 26.3 4.2 36 31-66 209-244 (258)
25 d1f32a_ d.62.1.1 (A:) Pepsin i 31.4 3.5 0.00025 32.0 -0.8 31 1-32 5-35 (147)
26 d1kkha1 d.14.1.5 (A:1-180) Mev 30.7 30 0.0022 23.5 4.3 49 32-94 122-170 (180)
27 d1wdka3 c.2.1.6 (A:311-496) Fa 30.3 12 0.00084 27.0 2.0 48 1-49 15-62 (186)
28 d1yb2a1 c.66.1.13 (A:6-255) Hy 28.9 7.9 0.00058 30.1 0.9 32 2-33 95-130 (250)
29 d2vhla2 c.1.9.10 (A:58-358) N- 28.7 12 0.00085 25.4 1.7 29 38-66 268-297 (301)
30 d2gy9t1 a.7.6.1 (T:4-86) Ribos 28.0 30 0.0022 23.1 3.8 44 21-64 7-59 (83)
31 d1ebfa2 d.81.1.2 (A:151-340) H 25.1 17 0.0012 26.7 2.1 16 44-59 40-55 (190)
32 d1rkda_ c.72.1.1 (A:) Ribokina 24.3 64 0.0047 22.0 5.1 30 32-61 252-281 (306)
33 d1ivha1 a.29.3.1 (A:242-392) I 22.8 99 0.0072 20.4 6.7 40 38-77 73-112 (151)
34 d2abqa1 c.72.1.1 (A:1-306) Fru 22.5 67 0.0049 22.9 5.1 30 32-61 249-278 (306)
35 d2b25a1 c.66.1.13 (A:6-329) Hy 21.9 13 0.00098 29.7 1.1 33 1-33 107-143 (324)
36 d1vpda2 c.2.1.6 (A:3-163) Hydr 21.9 6.6 0.00048 27.3 -0.7 25 1-25 11-35 (161)
37 d2puza2 c.1.9.17 (A:80-380) Im 20.7 41 0.003 22.2 3.3 21 43-63 273-293 (301)
38 d1vk4a_ c.72.1.1 (A:) Hypothet 20.4 73 0.0054 22.0 4.8 30 33-62 242-272 (288)
39 d2p9ba2 c.1.9.17 (A:71-394) Un 20.3 55 0.004 20.8 3.8 20 44-63 297-316 (324)
No 1
>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]}
Probab=73.84 E-value=1.8 Score=31.79 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHH
Q 027980 32 VAIEKAVVDALSQGLSSNDAAKQAQKE 58 (216)
Q Consensus 32 ~A~e~AL~da~~qGls~~eaAk~Aqk~ 58 (216)
.++..+|.+++...++++||++.||++
T Consensus 341 ~~~~~~~~~~~~G~~s~~eal~~~~~~ 367 (369)
T d1laxa_ 341 YAVRTAVINAASGRQTVDEALKDAQTR 367 (369)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 568889999999999999999999875
No 2
>d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=70.40 E-value=3 Score=30.70 Aligned_cols=32 Identities=34% Similarity=0.372 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 027980 32 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAA 63 (216)
Q Consensus 32 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAA 63 (216)
.++..++.+.+...++++||++++|+..++.-
T Consensus 374 ~~~~~~~~~~~~g~~t~~eal~~~~~~~~~~l 405 (407)
T d1eu8a_ 374 EIIQKYVNSALAGKISPQEALDKAQKEAEELV 405 (407)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46788888889888999999999988766543
No 3
>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=57.75 E-value=13 Score=26.78 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHH------HHHHHHHHHHHHhhhh--hcchhhcchhh
Q 027980 29 ARNVAIEKAVVDALSQGLSSNDAAKQAQK------EGAKAAKLAKRQAKRI--IGPIIAAGWDF 84 (216)
Q Consensus 29 ~R~~A~e~AL~da~~qGls~~eaAk~Aqk------~g~kAAKlA~rQAkRI--~GPiissgWDf 84 (216)
.||+.+-.+| .+|++++|+-+.-.+ ||..++|...+-+++. ==||+.+-.++
T Consensus 78 sRN~~~G~~l----~~G~~~~e~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~I 137 (155)
T d1txga1 78 GRNGMLGELL----GKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTKLLDSIYRV 137 (155)
T ss_dssp HHHHHHHHHH----HTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCccHHHHHH----hhhhhHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 6887776554 689999999776543 7889999888877753 12887776654
No 4
>d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]}
Probab=57.56 E-value=4.3 Score=35.50 Aligned_cols=49 Identities=24% Similarity=0.486 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhh
Q 027980 32 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFF 85 (216)
Q Consensus 32 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfF 85 (216)
|.+++||..|+ |-|.++-|+||.+++--+++|....-+-+ | +.+.||-|
T Consensus 341 rn~qka~l~AL---L~p~~~L~~~q~~gD~t~rla~~Ee~K~~-P-~~avW~~~ 389 (416)
T d1d8wa_ 341 RNMKKALLRAL---LEPTAELRKLEAPGDYTARLALLEEQKSL-P-WQAVWEMY 389 (416)
T ss_dssp HHHHHHHHHHH---TSCHHHHHHHHTTTCHHHHHHHHHHHTTS-C-HHHHHHHH
T ss_pred HHHHHHHHHHH---cCCHHHHHHHHHcCCHHHHHHHHHHHhcC-C-hHHHHHHH
Confidence 45788888888 67999999999999998888876554443 4 57789865
No 5
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.94 E-value=4.5 Score=29.71 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=38.4
Q ss_pred CCcceeeeeecceeEEEeechhHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 027980 2 GSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSND 50 (216)
Q Consensus 2 GsGtlACavKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qGls~~e 50 (216)
|+|--++.+..|....+|.+...-+++++++ +++.|..++..|+....
T Consensus 16 G~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~-i~~~l~~~~~~~~~~~~ 63 (192)
T d1f0ya2 16 GAGIAQVAAATGHTVVLVDQTEDILAKSKKG-IEESLRKVAKKKFAENP 63 (192)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-HHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHhCCCcEEEEECChHHHHHHHhh-HHHHHHHHHHhhhhccc
Confidence 3333356678899999999999999999887 78899999998886543
No 6
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=47.19 E-value=2.7 Score=33.30 Aligned_cols=32 Identities=34% Similarity=0.473 Sum_probs=25.4
Q ss_pred CCcceeee----eecceeEEEeechhHHHHHHHHHH
Q 027980 2 GSGTVACG----VKEGVKLYFYNIRAAHVERARNVA 33 (216)
Q Consensus 2 GsGtlACa----vKEGVKLY~ynIRs~hvE~~R~~A 33 (216)
|||++++. +...-++|.+-+|..|++.||...
T Consensus 106 GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~ 141 (264)
T d1i9ga_ 106 GSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNV 141 (264)
T ss_dssp TTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhh
Confidence 78877654 455568999999999999998654
No 7
>d2nn6h2 b.84.4.2 (H:25-72) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.92 E-value=1.8 Score=27.98 Aligned_cols=12 Identities=50% Similarity=1.046 Sum_probs=9.8
Q ss_pred ceeeeecccccc
Q 027980 95 TEGFIRGTGTLF 106 (216)
Q Consensus 95 tEgflRGtGTL~ 106 (216)
-++||||.||-+
T Consensus 12 ~~~~mrGHGTy~ 23 (48)
T d2nn6h2 12 DTGFMRGHGTYM 23 (48)
T ss_dssp CTTCCBCTTEEE
T ss_pred CCCeEcccccEe
Confidence 368999999954
No 8
>d1ursa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=45.69 E-value=7 Score=28.43 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHH
Q 027980 36 KAVVDALSQGLSSNDAAKQAQKEGAK 61 (216)
Q Consensus 36 ~AL~da~~qGls~~eaAk~Aqk~g~k 61 (216)
.+|++++..+++++||++.+|+.-+|
T Consensus 341 ~~~~~~~~G~~t~~~al~~~~~~i~k 366 (367)
T d1ursa_ 341 SILQNIIAGKVSPEQGAKDFVQNIQK 366 (367)
T ss_dssp THHHHHHHTSSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 57999999999999999999986543
No 9
>d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]}
Probab=44.21 E-value=7.7 Score=24.63 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 027980 35 EKAVVDALSQGLSSNDAAKQAQKEGAKAA 63 (216)
Q Consensus 35 e~AL~da~~qGls~~eaAk~Aqk~g~kAA 63 (216)
...|.-++..|||+.||.|.|-...+|+-
T Consensus 233 ~~~l~~~~~~Gls~~eal~~aT~npA~~l 261 (267)
T d2icsa2 233 ATTMEKLRVVGYDWPEIIEKVTKAPAENF 261 (267)
T ss_dssp HHHHHHHHHHTCCHHHHHHTTTHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 34455566779999999998887777654
No 10
>d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=42.51 E-value=12 Score=25.18 Aligned_cols=27 Identities=22% Similarity=0.113 Sum_probs=20.5
Q ss_pred HHHHHHhc-CCChHHHHHHHHHHHHHHH
Q 027980 37 AVVDALSQ-GLSSNDAAKQAQKEGAKAA 63 (216)
Q Consensus 37 AL~da~~q-Gls~~eaAk~Aqk~g~kAA 63 (216)
++..++.+ |||+.||.+.|-..++++-
T Consensus 255 ~~~~~v~~~Gls~~eal~~aT~n~A~~l 282 (288)
T d1o12a2 255 AVKNFRKFTGCSITELAKVSSYNSCVEL 282 (288)
T ss_dssp HHHHHHHHHCCCHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 45556664 9999999998887777653
No 11
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.89 E-value=12 Score=24.47 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=24.1
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHh
Q 027980 40 DALSQGLSSNDAAKQAQKEGAKAAKLAKRQA 70 (216)
Q Consensus 40 da~~qGls~~eaAk~Aqk~g~kAAKlA~rQA 70 (216)
+++.+|+|+.+||++=+---.-+-|+-.|..
T Consensus 25 ~~~~~G~s~r~aA~rf~VS~s~v~k~l~r~r 55 (63)
T d1k78a1 25 ELAHQGVRPCDISRQLRVSHGCVSKILGRYY 55 (63)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5678999999999998776666777766643
No 12
>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
Probab=40.35 E-value=14 Score=25.10 Aligned_cols=65 Identities=9% Similarity=0.121 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhh--hhhhhcCccce
Q 027980 31 NVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFF--EAIYYGGTITE 96 (216)
Q Consensus 31 ~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfF--EalYyGGt~tE 96 (216)
-+++++.......+-++..+- .++.+.+++.|+..-+++=+.+|..|+.-..+| |++..||.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~gd~~a~~i~~~~~~~la~~i~nl~~~ldPe~IvlGG~i~~ 140 (186)
T d2ap1a1 74 GRGFAWLYQHYYDQSLQAPEI-IALWEQGDEQAHAHVERYLDLLAVCLGNILTIVDPDLLVIGGGLSN 140 (186)
T ss_dssp HHHHHHHHHHHHCCCCCHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGG
T ss_pred hhhHHHHhhhccccccchhhH-HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCchhh
Confidence 345555555555666666655 455677888899999999999999999887774 78999998764
No 13
>d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=40.32 E-value=15 Score=23.94 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=22.7
Q ss_pred HHHHHHhc-CCChHHHHHHHHHHHHHHHHHH
Q 027980 37 AVVDALSQ-GLSSNDAAKQAQKEGAKAAKLA 66 (216)
Q Consensus 37 AL~da~~q-Gls~~eaAk~Aqk~g~kAAKlA 66 (216)
++..++.. |||+.||.+.|-.-+|||-.+.
T Consensus 263 ~~~~~v~~~gls~~~al~~aT~n~A~~LGld 293 (297)
T d1yrra2 263 GVRNLVEHCGIALDEVLRMATLYPARAIGVE 293 (297)
T ss_dssp HHHHHHHHHCCCHHHHHHHHTHHHHHHTTCT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCCC
Confidence 34445553 9999999999999998886553
No 14
>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Salmonella typhimurium [TaxId: 90371]}
Probab=39.19 E-value=8.1 Score=29.48 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 027980 32 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLA 66 (216)
Q Consensus 32 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA 66 (216)
-..-.||.-.+.+|++..||.++|++--.+|-|.+
T Consensus 213 c~lasaiaa~La~G~~l~~Av~~A~~~v~~~i~~s 247 (266)
T d1jxha_ 213 CTLSAALAALRPRHRSWGETVNEAKAWLSAALAQA 247 (266)
T ss_dssp HHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999987766655443
No 15
>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=39.11 E-value=18 Score=24.64 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=40.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhh--hhhhhcCcccee
Q 027980 44 QGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFF--EAIYYGGTITEG 97 (216)
Q Consensus 44 qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfF--EalYyGGt~tEg 97 (216)
..++.++..+ +.+.+++.|+..-+++=+-++-.|+.-..+| |.+..||.|++.
T Consensus 69 ~~~~~~~l~~-~~~~gd~~a~~~~~~~~~~la~~i~~~i~~ldp~~IvlGG~i~~~ 123 (175)
T d2gupa2 69 TDWDGRKIYQ-EAAAGNILCQEAIERMNRNLAQGLLNIQYLIDPGVISLGGSISQN 123 (175)
T ss_dssp CCCCHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGC
T ss_pred cchhhHHHHH-HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECCcccch
Confidence 4456666554 4456888888888888888999998888887 688999988654
No 16
>d1y60a_ d.14.1.12 (A:) Formaldehyde-activating enzyme, FAE {Methylobacterium extorquens [TaxId: 408]}
Probab=38.93 E-value=16 Score=28.35 Aligned_cols=42 Identities=31% Similarity=0.389 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHH------------------HHHHHHHHHHHHHHHHHh
Q 027980 29 ARNVAIEKAVVDALSQGLSSNDAA------------------KQAQKEGAKAAKLAKRQA 70 (216)
Q Consensus 29 ~R~~A~e~AL~da~~qGls~~eaA------------------k~Aqk~g~kAAKlA~rQA 70 (216)
.=|.|+-+|..|++.+|.-|+|-+ +.-++--..|+|+|.+.|
T Consensus 85 paQaaVA~aV~D~V~eG~iPk~~a~dl~iiv~V~i~p~a~D~~kiy~~Ny~ATk~AI~rA 144 (168)
T d1y60a_ 85 PAQHGVAMAVQDAVAEGIIPADEADDLYVLVGVFIHWEAADDAKIQKYNYEATKLSIQRA 144 (168)
T ss_dssp HHHHHHHHHHHHHHHTTSSCTTTGGGEEEEEEECCCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCChhhhccEEEEEEEeeCccccCHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999998877654 445566677888887766
No 17
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId: 562]}
Probab=37.30 E-value=29 Score=26.42 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhc
Q 027980 31 NVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAA 80 (216)
Q Consensus 31 ~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiiss 80 (216)
=.+.-.+|...+.+|++..||.++|...-.++-+.+.....|=| +||.|
T Consensus 223 GD~fsa~l~a~l~~G~~l~~A~~~A~~~v~~~l~~t~~~~~~EL-~li~~ 271 (288)
T d1vi9a_ 223 GDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYEL-QVVAA 271 (288)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSSC-CTTTT
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhcCchhH-HHHhh
Confidence 45678899999999999999999998877777766554333211 45554
No 18
>d2uubt1 a.7.6.1 (T:8-106) Ribosomal protein S20 {Thermus thermophilus [TaxId: 274]}
Probab=36.88 E-value=18 Score=25.37 Aligned_cols=44 Identities=27% Similarity=0.246 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHHHH-------HHHHHHHhcCC--ChHHHHHHHHHHHHHHHH
Q 027980 21 IRAAHVERARNVAIE-------KAVVDALSQGL--SSNDAAKQAQKEGAKAAK 64 (216)
Q Consensus 21 IRs~hvE~~R~~A~e-------~AL~da~~qGl--s~~eaAk~Aqk~g~kAAK 64 (216)
||..-..+.|++++. +.+.+|+..|- ...++.+.|++.-+||++
T Consensus 9 iRq~~krr~rN~~~kS~~kT~iKk~~~ai~~~d~e~A~~~l~~a~s~iDKAak 61 (99)
T d2uubt1 9 HRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAK 61 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHh
Confidence 566677778888774 44567777774 245667889999888765
No 19
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]}
Probab=35.37 E-value=32 Score=26.61 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=44.6
Q ss_pred CCcceeeeeecceeEEEeechhHHHHHHH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 027980 2 GSGTVACGVKEGVKLYFYNIRAAHVERAR-NVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQ 69 (216)
Q Consensus 2 GsGtlACavKEGVKLY~ynIRs~hvE~~R-~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQ 69 (216)
|..|+-|. .+| +.|+++....-+-.+= =..+-..+.-.+.||+++.||+..|.-.-.+||.++.++
T Consensus 186 G~~t~I~~-~~g-~~~~~~~g~~~lat~GsGDvLaGiIa~~lAq~~~~~~Aa~~a~~lh~~aa~~~~~~ 252 (275)
T d1kyha_ 186 GNQTVIAF-PDG-DCWLNPTGNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAELWTDE 252 (275)
T ss_dssp STTCEEEC-TTS-CEEECCCCCGGGCSTTHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceEEc-CCC-ceeecCCCCccccCCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444443 233 6777776655321110 134566778888999999999999999888999888765
No 20
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.31 E-value=62 Score=22.06 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Q 027980 26 VERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPI 77 (216)
Q Consensus 26 vE~~R~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPi 77 (216)
+|.+|.-.+ ...+.+.+|.+....+..|+..+..++..+.++|-.|+|+.
T Consensus 61 ~~~~r~~~~--~aa~~~d~~~~~~~~~~~aK~~a~~~a~~~~~~a~qi~Gg~ 110 (154)
T d1siqa1 61 ITLGLHACL--QLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGN 110 (154)
T ss_dssp HHHHHHHHH--HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHH--HHHHhhhhcchhhHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Confidence 444444333 34577888998888888888888888888999999999975
No 21
>d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples}
Probab=34.56 E-value=17 Score=23.64 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=17.0
Q ss_pred hcCCChHHHHHHHHHHHHHHH
Q 027980 43 SQGLSSNDAAKQAQKEGAKAA 63 (216)
Q Consensus 43 ~qGls~~eaAk~Aqk~g~kAA 63 (216)
..||||.||-+.|=..++|+-
T Consensus 273 ~~glt~~eal~~aT~~~A~~l 293 (301)
T d2q09a2 273 LFGLTPVEAMAGVTRHAARAL 293 (301)
T ss_dssp HHCCCHHHHHHHTTHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHHh
Confidence 469999999988877777664
No 22
>d1z6ra3 c.55.1.10 (A:211-406) Mlc protein {Escherichia coli [TaxId: 562]}
Probab=33.47 E-value=25 Score=24.30 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhh--hhhhhcCccce
Q 027980 46 LSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFF--EAIYYGGTITE 96 (216)
Q Consensus 46 ls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfF--EalYyGGt~tE 96 (216)
++.++- .++.+.+++.|+..-.++=+.++-.|+.-..+| |.+..||.+.+
T Consensus 85 ~~~~~~-~~~~~~gd~~a~~i~~~~~~~la~~i~~l~~~ldP~~IvigG~~~~ 136 (196)
T d1z6ra3 85 LTVDSL-CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSK 136 (196)
T ss_dssp CCHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGG
T ss_pred CCHHHH-HHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecchhh
Confidence 344444 456667888999999999999999999888887 78999998875
No 23
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}
Probab=32.08 E-value=3.5 Score=30.22 Aligned_cols=41 Identities=34% Similarity=0.635 Sum_probs=29.7
Q ss_pred hhhhhcCccceeeeeccccccccccccccccccccc--------hhhhcccccc
Q 027980 86 EAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGR--------FGYLVGSHLG 131 (216)
Q Consensus 86 EalYyGGt~tEgflRGtGTL~Gty~GGf~GE~RlGr--------~GYLvGShlG 131 (216)
++|.-.+++++|+ ++.| ...||.||-+|||. ||-++|.+..
T Consensus 257 ~~~~~~~~~~~gl-~a~G----~~~~g~hg~nrlg~~~~~~~~~~g~~ag~~a~ 305 (308)
T d1y0pa2 257 EVMNAKKQVIPGL-YGAG----EVTGGVHGANRLGGNAISDIITFGRLAGEEAA 305 (308)
T ss_dssp EEECTTSCEEEEE-EECS----TTEESSSTTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ceecCCCCcccce-eehh----hhhccccCcCCCchhhHHHHHHHHHHHHHHHH
Confidence 4566678888874 5655 45679999999996 6777776544
No 24
>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus thermophilus [TaxId: 274]}
Probab=31.58 E-value=24 Score=26.33 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 027980 31 NVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLA 66 (216)
Q Consensus 31 ~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA 66 (216)
=-.+-.||.-.+.+|++..||.++|+.--.++-|.+
T Consensus 209 Gd~~asaia~~La~G~~l~~Av~~A~~~v~~~i~~a 244 (258)
T d1ub0a_ 209 GCTLSAAIAALLAKGRPLAEAVAEAKAYLTRALKTA 244 (258)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 346888999999999999999999998766665443
No 25
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=31.44 E-value=3.5 Score=31.95 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=24.4
Q ss_pred CCCcceeeeeecceeEEEeechhHHHHHHHHH
Q 027980 1 MGSGTVACGVKEGVKLYFYNIRAAHVERARNV 32 (216)
Q Consensus 1 mGsGtlACavKEGVKLY~ynIRs~hvE~~R~~ 32 (216)
|.+|+.+|+|+ +-+||.+++|--|++..-+.
T Consensus 5 lsTg~~iCvV~-dN~Lfang~~lR~L~~~E~q 35 (147)
T d1f32a_ 5 MSTGPFICTVK-DNQVFVANLPWTMLEGDDIQ 35 (147)
T ss_dssp EEESCCCEEEE-TTEEEETTEEEEECCGGGHH
T ss_pred eccCceEEEEE-CCEEEecCceeeeCCHHHHH
Confidence 56799999998 56799999998777665533
No 26
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=30.66 E-value=30 Score=23.51 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhhhhhhhcCcc
Q 027980 32 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFFEAIYYGGTI 94 (216)
Q Consensus 32 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfFEalYyGGt~ 94 (216)
-|+-.||.+.....++..|-++.|+ ++.+.+.+ -+||-|-.=++| ||-+
T Consensus 122 va~~~al~~~~~~~l~~~~l~~la~------------~~E~~~~g-~~sg~D~~~~~~-Gg~i 170 (180)
T d1kkha1 122 IGTIKAVSGFYNKELKDDEIAKLGY------------MVEKEIQG-KASITDTSTITY-KGIL 170 (180)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHH------------HHHHHHSS-SCCSHHHHHHHH-CSEE
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHH------------HHHHHhCC-CCCHHHHHHHHh-CCEE
Confidence 4555666666667777766554433 45555555 389999987664 7753
No 27
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
Probab=30.29 E-value=12 Score=27.04 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=35.1
Q ss_pred CCCcceeeeeecceeEEEeechhHHHHHHHHHHHHHHHHHHHhcCCChH
Q 027980 1 MGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSN 49 (216)
Q Consensus 1 mGsGtlACavKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qGls~~ 49 (216)
||+|--++.+.-|.+..+|.+-..-++++++++ ++.|.+.+..|....
T Consensus 15 mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i-~~~l~~~~~~~~~~~ 62 (186)
T d1wdka3 15 MGGGIAYQSASKGTPILMKDINEHGIEQGLAEA-AKLLVGRVDKGRMTP 62 (186)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH-HHHHHHHHTTTSSCH
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhh-hhhHHhhhcccccch
Confidence 344434455667999999999988889998885 677777777665544
No 28
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=28.92 E-value=7.9 Score=30.06 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=24.6
Q ss_pred CCcceeee----eecceeEEEeechhHHHHHHHHHH
Q 027980 2 GSGTVACG----VKEGVKLYFYNIRAAHVERARNVA 33 (216)
Q Consensus 2 GsGtlACa----vKEGVKLY~ynIRs~hvE~~R~~A 33 (216)
|||.+++. +...-++|.+.++..+++.||+..
T Consensus 95 GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~ 130 (250)
T d1yb2a1 95 GSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL 130 (250)
T ss_dssp TTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH
Confidence 67766544 445569999999999998888764
No 29
>d2vhla2 c.1.9.10 (A:58-358) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Bacillus subtilis [TaxId: 1423]}
Probab=28.74 E-value=12 Score=25.41 Aligned_cols=29 Identities=17% Similarity=0.075 Sum_probs=21.7
Q ss_pred HHHHHh-cCCChHHHHHHHHHHHHHHHHHH
Q 027980 38 VVDALS-QGLSSNDAAKQAQKEGAKAAKLA 66 (216)
Q Consensus 38 L~da~~-qGls~~eaAk~Aqk~g~kAAKlA 66 (216)
+..++. .|||+.+|.+.+-...+|+-.+.
T Consensus 268 ~~~~v~~~gls~~~a~~~~T~NpAk~lGL~ 297 (301)
T d2vhla2 268 ARHMREFTNCSWTDIANITSENAAKQLGIF 297 (301)
T ss_dssp HHHHHHHHCCCHHHHHHHHTHHHHHHHTCT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCC
Confidence 344555 49999999999988888776543
No 30
>d2gy9t1 a.7.6.1 (T:4-86) Ribosomal protein S20 {Escherichia coli [TaxId: 562]}
Probab=27.98 E-value=30 Score=23.12 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=28.2
Q ss_pred chhHHHHHHHHHHHH-------HHHHHHHhcCC--ChHHHHHHHHHHHHHHHH
Q 027980 21 IRAAHVERARNVAIE-------KAVVDALSQGL--SSNDAAKQAQKEGAKAAK 64 (216)
Q Consensus 21 IRs~hvE~~R~~A~e-------~AL~da~~qGl--s~~eaAk~Aqk~g~kAAK 64 (216)
||-....+.|++++. +.+.+|+..|- ...++.+.|++.-++|++
T Consensus 7 ~rq~~kr~~~N~~~kS~~rT~iKk~~~ai~~~d~~~a~~~~~~a~s~iDkaa~ 59 (83)
T d2gy9t1 7 AIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAA 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777764 44556666662 223455778888888875
No 31
>d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.12 E-value=17 Score=26.70 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=14.5
Q ss_pred cCCChHHHHHHHHHHH
Q 027980 44 QGLSSNDAAKQAQKEG 59 (216)
Q Consensus 44 qGls~~eaAk~Aqk~g 59 (216)
+|+|.+||.|+||+.|
T Consensus 40 ~g~~f~~al~~Aq~lG 55 (190)
T d1ebfa2 40 NDVKFSDVVKVAKKLG 55 (190)
T ss_dssp CCCCHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHhcC
Confidence 3899999999999987
No 32
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}
Probab=24.33 E-value=64 Score=21.96 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 027980 32 VAIEKAVVDALSQGLSSNDAAKQAQKEGAK 61 (216)
Q Consensus 32 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~k 61 (216)
.+.--++.-++.+|+++.+|.+.|...++.
T Consensus 252 Daf~Ag~l~~l~~g~~~~~a~~~a~~~aa~ 281 (306)
T d1rkda_ 252 DTFNGALITALLEEKPLPEAIRFAHAAAAI 281 (306)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456667788899999999999988775543
No 33
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.80 E-value=99 Score=20.35 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=31.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Q 027980 38 VVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPI 77 (216)
Q Consensus 38 L~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPi 77 (216)
......+|.++...+-.|+..+..++..+..+|-+|+|+.
T Consensus 73 a~~~~~~~~~~~~~~~~aK~~~~e~~~~~~~~a~~i~Gg~ 112 (151)
T d1ivha1 73 VAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGN 112 (151)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3456678877776666777778888888999999999986
No 34
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]}
Probab=22.53 E-value=67 Score=22.90 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 027980 32 VAIEKAVVDALSQGLSSNDAAKQAQKEGAK 61 (216)
Q Consensus 32 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~k 61 (216)
.+.-.++.-++.+|++..+|.+.|...++.
T Consensus 249 DaF~ag~l~~l~~g~~~~~al~~a~a~aa~ 278 (306)
T d2abqa1 249 DSVVAGFLAALQEGKSLEDAVPFAVAAGSA 278 (306)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 567788889999999999999999875543
No 35
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.92 E-value=13 Score=29.72 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=25.5
Q ss_pred CCCcceeeee----ecceeEEEeechhHHHHHHHHHH
Q 027980 1 MGSGTVACGV----KEGVKLYFYNIRAAHVERARNVA 33 (216)
Q Consensus 1 mGsGtlACav----KEGVKLY~ynIRs~hvE~~R~~A 33 (216)
.|||.+++.. ...-++|.+-|+..+++.||+..
T Consensus 107 tGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~ 143 (324)
T d2b25a1 107 SGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY 143 (324)
T ss_dssp CTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHH
Confidence 3788877653 34458999999999999998754
No 36
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}
Probab=21.89 E-value=6.6 Score=27.26 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=16.8
Q ss_pred CCCcceeeeeecceeEEEeechhHH
Q 027980 1 MGSGTVACGVKEGVKLYFYNIRAAH 25 (216)
Q Consensus 1 mGsGtlACavKEGVKLY~ynIRs~h 25 (216)
||++--..-.|.|.++++||+...-
T Consensus 11 MG~~~A~~L~~~G~~V~~~d~~~~~ 35 (161)
T d1vpda2 11 MGKPMSKNLLKAGYSLVVSDRNPEA 35 (161)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeCCcch
Confidence 3333334456889999999986543
No 37
>d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]}
Probab=20.67 E-value=41 Score=22.23 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=17.5
Q ss_pred hcCCChHHHHHHHHHHHHHHH
Q 027980 43 SQGLSSNDAAKQAQKEGAKAA 63 (216)
Q Consensus 43 ~qGls~~eaAk~Aqk~g~kAA 63 (216)
..|||+.||-|-|=..++||-
T Consensus 273 ~~gl~~~eal~~aT~~~A~~L 293 (301)
T d2puza2 273 LFRMTVEECLTATTRNAAKAL 293 (301)
T ss_dssp HHCCCHHHHHHHTTHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHHh
Confidence 469999999998888888764
No 38
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]}
Probab=20.40 E-value=73 Score=22.03 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=22.5
Q ss_pred HHHHHHHHH-HhcCCChHHHHHHHHHHHHHH
Q 027980 33 AIEKAVVDA-LSQGLSSNDAAKQAQKEGAKA 62 (216)
Q Consensus 33 A~e~AL~da-~~qGls~~eaAk~Aqk~g~kA 62 (216)
+.-.++..+ +.+|+++.+|++.|...++..
T Consensus 242 sF~ag~i~~~l~~g~~~~~a~~~A~~~Aa~~ 272 (288)
T d1vk4a_ 242 TCTAAFLVGFVFKKMSIEKATKFAAAVTSVK 272 (288)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 566677777 679999999998877665443
No 39
>d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]}
Probab=20.30 E-value=55 Score=20.85 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=15.1
Q ss_pred cCCChHHHHHHHHHHHHHHH
Q 027980 44 QGLSSNDAAKQAQKEGAKAA 63 (216)
Q Consensus 44 qGls~~eaAk~Aqk~g~kAA 63 (216)
.|||+.||-+-|-..+++|-
T Consensus 297 ~Gls~~eaL~~aT~n~A~~l 316 (324)
T d2p9ba2 297 AGFSPAEALHAATAVNASIL 316 (324)
T ss_dssp HCCCHHHHHHHHTHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHh
Confidence 48888888887777776654
Done!