BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027981
         (216 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3N0K|A Chain A, Proteinase Inhibitor From Coprinopsis Cinerea
          Length = 150

 Score = 35.4 bits (80), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 44  ILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFE 103
           +   V  +   R  A+DR ++ +++R            + PE     N + V     A+ 
Sbjct: 10  VTSKVNGLHVGRPLAEDRSLLPKRIR------------VLPEDNNSGNSWVVEKDDDAYI 57

Query: 104 LGCTVCPVAIKYNKIFVDAFWNSRKQS-------------FTMHLLQLMTSWAVVCDVWY 150
           L C   PVA +  K+F D   N   +              FT+        W V  D   
Sbjct: 58  LYCKGAPVAPQEGKLFADLLGNMEDKKWIVTHQPQHGENVFTVVNASTEHGWVVPADAEE 117

Query: 151 LEPQTLRPGETAIEFAER 168
           L+   +RP   A  +  R
Sbjct: 118 LQQVEVRPLIAAPSYPPR 135


>pdb|3VWC|A Chain A, High Resolution Structure Of Proteinase Inhibitor From
           Coprinopsis Cinerea
          Length = 149

 Score = 35.4 bits (80), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 44  ILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFE 103
           +   V  +   R  A+DR ++ +++R            + PE     N + V     A+ 
Sbjct: 9   VTSKVNGLHVGRPLAEDRSLLPKRIR------------VLPEDNNSGNSWVVEKDDDAYI 56

Query: 104 LGCTVCPVAIKYNKIFVDAFWNSRKQS-------------FTMHLLQLMTSWAVVCDVWY 150
           L C   PVA +  K+F D   N   +              FT+        W V  D   
Sbjct: 57  LYCKGAPVAPQEGKLFADLLGNMEDKKWIVTHQPQHGENVFTVVNASTEHGWVVPADAEE 116

Query: 151 LEPQTLRPGETAIEFAER 168
           L+   +RP   A  +  R
Sbjct: 117 LQQVEVRPLIAAPSYPPR 134


>pdb|2K5E|A Chain A, Solution Structure Of Putative Uncharacterized Protein
          Gsu1278 From Methanocaldococcus Jannaschii, Northeast
          Structural Genomics Consortium (Nesg) Target Gsr195
          Length = 73

 Score = 30.4 bits (67), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 26 FAVIMQKHPGWVGLLQSTILESVGCIW 52
          FA  +Q HPG  G+L+S  L  +GC+ 
Sbjct: 11 FAQALQTHPGVAGVLRSYNLGCIGCMG 37


>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
 pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
          Length = 257

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 107 TVCPVAIKYNKIFV-------DAFWNSRKQSFTMHLLQLMTSWAV-VCDVWYLEPQTL 156
           T+C   I YN + +       D+ + + +QS T H+ +L+ +W   VC  + LEP  +
Sbjct: 15  TLCEDRIFYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVV 72


>pdb|3LM4|A Chain A, Crystal Structure Of 2,3-Dihydroxy Biphenyl Dioxygenase
           From Rhodococcus Sp. (Strain Rha1)
 pdb|3LM4|B Chain B, Crystal Structure Of 2,3-Dihydroxy Biphenyl Dioxygenase
           From Rhodococcus Sp. (Strain Rha1)
 pdb|3LM4|C Chain C, Crystal Structure Of 2,3-Dihydroxy Biphenyl Dioxygenase
           From Rhodococcus Sp. (Strain Rha1)
 pdb|3LM4|D Chain D, Crystal Structure Of 2,3-Dihydroxy Biphenyl Dioxygenase
           From Rhodococcus Sp. (Strain Rha1)
          Length = 339

 Score = 26.9 bits (58), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 178 GLKKVPWDGYLKYSRPSPKHRERKQQSFA 206
           G  K+PW+ Y  Y  PSP   ++  + +A
Sbjct: 300 GGAKLPWESYFTYGTPSPLSLDQHIEKYA 328


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,238,265
Number of Sequences: 62578
Number of extensions: 237151
Number of successful extensions: 655
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 5
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)