Query 027981
Match_columns 216
No_of_seqs 168 out of 1390
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 06:35:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.9 2.5E-23 8.6E-28 171.6 3.7 169 2-179 129-343 (367)
2 2lnd_A De novo designed protei 33.1 30 0.001 21.9 2.4 25 65-90 40-64 (112)
3 3u5e_L 60S ribosomal protein L 24.4 50 0.0017 24.6 2.7 56 44-112 89-148 (199)
4 4edg_A DNA primase; catalytic 22.5 3E+02 0.01 22.1 7.3 78 6-86 155-234 (329)
5 3ivz_A Nitrilase; alpha-beta s 19.0 91 0.0031 23.7 3.4 14 76-89 33-46 (262)
6 3hkx_A Amidase; alpha-beta-BET 17.3 1.1E+02 0.0038 23.6 3.6 24 64-89 42-65 (283)
7 2w1v_A Nitrilase-2, nitrilase 16.1 1.2E+02 0.0041 23.2 3.5 14 76-89 34-47 (276)
8 3p8k_A Hydrolase, carbon-nitro 15.4 1E+02 0.0036 23.8 3.0 14 76-89 52-65 (281)
9 1uf5_A N-carbamyl-D-amino acid 14.9 1.3E+02 0.0046 23.2 3.5 14 76-89 37-50 (303)
10 2au3_A DNA primase; zinc ribbo 14.3 5.1E+02 0.017 21.2 7.9 74 12-86 251-326 (407)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.87 E-value=2.5e-23 Score=171.59 Aligned_cols=169 Identities=10% Similarity=0.099 Sum_probs=114.8
Q ss_pred CCCeEEEeCCCchhHHHHHHHhc---------ceEEEEecCCcch---hhhHHHHHhhcCeEEE----e------CCCch
Q 027981 2 RPKQVFVANHTSMIDFIILEQMT---------AFAVIMQKHPGWV---GLLQSTILESVGCIWF----N------RSEAK 59 (216)
Q Consensus 2 ~~~~iiv~NH~S~~D~~~l~~~~---------~~~~~~~~~~~~~---~~~~~~~~~~~g~i~v----~------r~~~~ 59 (216)
++++|++|||+|.+|++++..++ ++.++++++.... .|+ +.+ +.++||+. + |++.+
T Consensus 129 ~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pf-s~g-~~l~cI~~kk~id~~p~l~r~~~r 206 (367)
T 1iuq_A 129 GHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPF-SIG-RNLICVYSKKHMFDIPELTETKRK 206 (367)
T ss_dssp TCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHH-HHT-SEEEECCCGGGTTSSGGGHHHHHH
T ss_pred CCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccch-hhh-hheeeEEecccCCCcchhhhhhhH
Confidence 57999999999999999999887 4688888776422 122 444 55667775 4 54445
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEecccceeCC----cee--eccccccc----c----CCCc--eEEEEEEccccccccc
Q 027981 60 DREIVARKLRDHVQGTDNNPLLIFPEGTCVNN----HYT--VMFKKGAF----E----LGCT--VCPVAIKYNKIFVDAF 123 (216)
Q Consensus 60 ~~~~~~~~~~~~l~~~~g~~l~iFPEGt~s~~----~~l--~~fk~Ga~----~----~~~p--IvPv~i~~~~~~~~~~ 123 (216)
....+++++.+.+++ +|.+|+|||||||+++ +.+ .+|++|+| . +++| |+|++|.....+..+
T Consensus 207 ~n~ksl~~~~~~Lk~-GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~t~~imppp- 284 (367)
T 1iuq_A 207 ANTRSLKEMALLLRG-GSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPP- 284 (367)
T ss_dssp HHHHHHHHHHHHHHH-CCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEECGGGSCCC-
T ss_pred HHHHHHHHHHHHHHc-CCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEEEeccccCCc-
Confidence 567778888888885 4779999999999995 444 45999988 3 4999 999999943333211
Q ss_pred ccCCCchHHHHHHHHhhccceEEEEEeecccCCCC----CC----CHHHHHHHHHHHHHHHcCC
Q 027981 124 WNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTLRP----GE----TAIEFAERVRDIISVRAGL 179 (216)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~i~v~~~~pi~~~~----~~----~~~~~~~~v~~~i~~~l~~ 179 (216)
...-..++.-....++.+.|++|+||+.++ .+ ..+++++.+++.|++.+..
T Consensus 285 -----~~ve~~~g~~r~i~~~~V~v~ig~pI~~~~l~~~~e~~~e~~~~l~e~v~~~I~~~y~~ 343 (367)
T 1iuq_A 285 -----SQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNV 343 (367)
T ss_dssp ---------------CCCCCBCCEEEECCCCCHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccccccccccceeecccEEEEECCccchhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111001234679999999998653 12 2446888889988877743
No 2
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=33.09 E-value=30 Score=21.86 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCCCCeEEecccceeC
Q 027981 65 ARKLRDHVQGTDNNPLLIFPEGTCVN 90 (216)
Q Consensus 65 ~~~~~~~l~~~~g~~l~iFPEGt~s~ 90 (216)
+..+.+-++. +|.++++|-.|..-+
T Consensus 40 irdiiksmkd-ngkplvvfvngasqn 64 (112)
T 2lnd_A 40 IRDIIKSMKD-NGKPLVVFVNGASQN 64 (112)
T ss_dssp HHHHHHHHTT-CCSCEEEEECSCCHH
T ss_pred HHHHHHHHHh-cCCeEEEEecCcccc
Confidence 3455556665 699999999887655
No 3
>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L 4b6a_L
Probab=24.41 E-value=50 Score=24.62 Aligned_cols=56 Identities=13% Similarity=0.243 Sum_probs=32.9
Q ss_pred HHhhcCeEEEeCCCc----hhHHHHHHHHHHHHhcCCCCCeEEecccceeCCceeeccccccccCCCceEEEE
Q 027981 44 ILESVGCIWFNRSEA----KDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVA 112 (216)
Q Consensus 44 ~~~~~g~i~v~r~~~----~~~~~~~~~~~~~l~~~~g~~l~iFPEGt~s~~~~l~~fk~Ga~~~~~pIvPv~ 112 (216)
+.+.+| |.||..-. .+.+...+.+.++..+ |++||-... ..+.|+.++..+|+|+.
T Consensus 89 ~A~tiG-I~VD~RR~nks~Esl~~NVqrLk~y~sk-----lilFPrk~~-------~~kkGatq~~g~vmPi~ 148 (199)
T 3u5e_L 89 YARTIG-IAVDHRRQNRNQEIFDANVQRLKEYQSK-----IIVFPRNGK-------APEAEQVLSAAATFPIA 148 (199)
T ss_dssp HHHHTT-BCCCTTCCCCBHHHHHHHHHHHHHHHHT-----EEECCSSSC-------CCCCCCCCCSTTTSCCC
T ss_pred HhcccC-eeeccccccccHHHHHHHHHHHHHHHhh-----eeEeccccc-------ccccccccccccccccc
Confidence 344444 78875432 2345556667777764 999994432 23556655555666654
No 4
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=22.46 E-value=3e+02 Score=22.12 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=40.2
Q ss_pred EEEeCCCchhHHHHHHHhcceEEEEecCCcchhhhHHHHHhhcCeEEEeCCCchhHHHHHHHHHHHHhcCCCC--CeEEe
Q 027981 6 VFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNN--PLLIF 83 (216)
Q Consensus 6 iiv~NH~S~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~r~~~~~~~~~~~~~~~~l~~~~g~--~l~iF 83 (216)
++|+ -+++|++.+..+.-...++.-...+...-+..+.+....+.+--++..........+.+.+.. .|. .++.+
T Consensus 155 vivv--EG~~Dvial~q~Gi~naVA~lGTalt~~~~~~L~r~~~~Vil~~D~D~AG~~Aa~r~~~~l~~-~g~~v~v~~l 231 (329)
T 4edg_A 155 IVLL--EGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQHLLQ-QGLNVFVIQL 231 (329)
T ss_dssp EEEE--SCHHHHHHHHHHTCCSEEECSSSCCCHHHHHHHHHHCSEEEECCCSSHHHHHHHHHHHHHHHH-TTCEEEECCC
T ss_pred EEEE--ecHHHHHHHHHcCCCeEEECCccCCCHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHh-cCCeEEEEEC
Confidence 4444 689999998765322234333332322234445555566666555544434444444444443 343 35667
Q ss_pred ccc
Q 027981 84 PEG 86 (216)
Q Consensus 84 PEG 86 (216)
|+|
T Consensus 232 P~g 234 (329)
T 4edg_A 232 PSG 234 (329)
T ss_dssp CTT
T ss_pred CCC
Confidence 887
No 5
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=19.03 E-value=91 Score=23.74 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=11.6
Q ss_pred CCCCeEEeccccee
Q 027981 76 DNNPLLIFPEGTCV 89 (216)
Q Consensus 76 ~g~~l~iFPEGt~s 89 (216)
.|--|++|||-..+
T Consensus 33 ~gadlvvfPE~~~~ 46 (262)
T 3ivz_A 33 QGAQLVVLPELFDT 46 (262)
T ss_dssp TTCSEEECCTTTTT
T ss_pred CCCCEEEeCCCccc
Confidence 47889999997765
No 6
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=17.32 E-value=1.1e+02 Score=23.63 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCCCCeEEeccccee
Q 027981 64 VARKLRDHVQGTDNNPLLIFPEGTCV 89 (216)
Q Consensus 64 ~~~~~~~~l~~~~g~~l~iFPEGt~s 89 (216)
..+.+.++.+ .|--|++|||-..+
T Consensus 42 ~~~~i~~A~~--~gadlvvfPE~~l~ 65 (283)
T 3hkx_A 42 IDDAAARASE--QGAQLLLTPELFGF 65 (283)
T ss_dssp HHHHHHHHHH--TTCSEEECCTTGGG
T ss_pred HHHHHHHHHH--CCCCEEEcCCCccc
Confidence 3333444444 47889999998775
No 7
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=16.10 E-value=1.2e+02 Score=23.19 Aligned_cols=14 Identities=14% Similarity=0.219 Sum_probs=11.5
Q ss_pred CCCCeEEeccccee
Q 027981 76 DNNPLLIFPEGTCV 89 (216)
Q Consensus 76 ~g~~l~iFPEGt~s 89 (216)
.|--|++|||...+
T Consensus 34 ~gadlvv~PE~~~~ 47 (276)
T 2w1v_A 34 QGANIVSLPECFNS 47 (276)
T ss_dssp TTCSEEECCTTTTS
T ss_pred CCCCEEEcCCCccc
Confidence 47789999998764
No 8
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=15.36 E-value=1e+02 Score=23.78 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=11.7
Q ss_pred CCCCeEEeccccee
Q 027981 76 DNNPLLIFPEGTCV 89 (216)
Q Consensus 76 ~g~~l~iFPEGt~s 89 (216)
.|--|++|||-..+
T Consensus 52 ~gadlvvfPE~~l~ 65 (281)
T 3p8k_A 52 AEVDVVVLPEMWNN 65 (281)
T ss_dssp TTCCEEECCSSTTT
T ss_pred CCCcEEEcCCCccC
Confidence 47889999998765
No 9
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=14.87 E-value=1.3e+02 Score=23.21 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=11.5
Q ss_pred CCCCeEEeccccee
Q 027981 76 DNNPLLIFPEGTCV 89 (216)
Q Consensus 76 ~g~~l~iFPEGt~s 89 (216)
.|--|++|||...+
T Consensus 37 ~gadlvv~PE~~~~ 50 (303)
T 1uf5_A 37 RGANFIVFPELALT 50 (303)
T ss_dssp TTCSEEECCTTTTS
T ss_pred cCCCEEEecccccc
Confidence 47789999998765
No 10
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=14.31 E-value=5.1e+02 Score=21.19 Aligned_cols=74 Identities=8% Similarity=0.013 Sum_probs=36.5
Q ss_pred CchhHHHHHHHhcceEEEEecCCcchhhhHHHHHhhcCeEEEeCCCchhHHHHHHHHHHHHhcCCCC--CeEEeccc
Q 027981 12 TSMIDFIILEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNN--PLLIFPEG 86 (216)
Q Consensus 12 ~S~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~r~~~~~~~~~~~~~~~~l~~~~g~--~l~iFPEG 86 (216)
-+++|++.+..+.-...++.-...+...-+..+.+....|.+--++......+...+.+.+.+ .|. .++..|+|
T Consensus 251 EG~~Dvlsl~q~G~~n~VA~lGtalt~~~~~~L~r~~~~vil~~D~D~AG~~Aa~r~~~~l~~-~g~~~~v~~lP~g 326 (407)
T 2au3_A 251 EGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLS-AGVEVYPVYLPEG 326 (407)
T ss_dssp SSHHHHHHHHHTTCCSEEEESSSSCCHHHHHHHHTTCSEEEEECCSSHHHHHHHHHHHHHHHH-TTCEEEEECCCTT
T ss_pred echHhHHHHHHCCCCcEEEcCcccCCHHHHHHHHhcCCeEEEEEcCCHHHHHHHHHHHHHHHh-CCCeEEEEECCCC
Confidence 589999998765311233333322222223334444455555554444334444444444443 344 35667876
Done!