RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 027981
(216 letters)
>gnl|CDD|215447 PLN02833, PLN02833, glycerol acyltransferase family protein.
Length = 376
Score = 479 bits (1234), Expect = e-173
Identities = 193/215 (89%), Positives = 205/215 (95%)
Query: 2 RPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDR 61
RPKQVFVANHTSMIDFI+LEQMT FAVIMQKHPGWVG LQ+TILESVGCIWFNR+EAKDR
Sbjct: 162 RPKQVFVANHTSMIDFIVLEQMTPFAVIMQKHPGWVGFLQNTILESVGCIWFNRTEAKDR 221
Query: 62 EIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNKIFVD 121
E+VA+KLRDHVQ D NPLLIFPEGTCVNN YTVMFKKGAFELGCTVCP+AIKYNKIFVD
Sbjct: 222 EVVAKKLRDHVQDPDRNPLLIFPEGTCVNNEYTVMFKKGAFELGCTVCPIAIKYNKIFVD 281
Query: 122 AFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTLRPGETAIEFAERVRDIISVRAGLKK 181
AFWNSRKQSFTMHLL+LMTSWAVVCDVWYLEPQTLRPGET IEFAERVRD+I+ RAGLKK
Sbjct: 282 AFWNSRKQSFTMHLLRLMTSWAVVCDVWYLEPQTLRPGETPIEFAERVRDMIAKRAGLKK 341
Query: 182 VPWDGYLKYSRPSPKHRERKQQSFAESVLRRLDEK 216
VPWDGYLKY RPSPKH E+KQQSFAES+LRRL+EK
Sbjct: 342 VPWDGYLKYYRPSPKHTEKKQQSFAESLLRRLEEK 376
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 264 bits (677), Expect = 1e-90
Identities = 81/186 (43%), Positives = 110/186 (59%), Gaps = 2/186 (1%)
Query: 6 VFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREIVA 65
+ VANHTS ID +IL +++ +K G + + TIL ++GCI+ +RSE KDR+ V
Sbjct: 27 IIVANHTSFIDPLILFSDLFPSIVAKKELGKLPFIG-TILRALGCIFVDRSEPKDRKKVV 85
Query: 66 RKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNKIFVDAFWN 125
++++ + P+LIFPEGT N +MFKKGAFE G V PVAI+Y FVDAFWN
Sbjct: 86 EEIKERATDPNWPPILIFPEGTTTNGKALIMFKKGAFEPGVPVQPVAIRYPNKFVDAFWN 145
Query: 126 SRKQSFTMHLLQLMTSWAVVCDVWYLEPQTL-RPGETAIEFAERVRDIISVRAGLKKVPW 184
S S M+L +L+T A V +V +L T GE EFA RVR I++ + GL W
Sbjct: 146 SSGYSSLMYLFRLLTQPANVLEVEFLPVYTPSEEGEDPKEFANRVRLIMANKLGLPATDW 205
Query: 185 DGYLKY 190
G K
Sbjct: 206 TGEDKR 211
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 90.4 bits (225), Expect = 2e-23
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 6 VFVANHTSMIDFIIL-----EQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKD 60
+ VANH S +D ++L ++ + + + L ++ +GCI+ +R AKD
Sbjct: 17 IVVANHQSYLDPLLLSLLLPKRGRPLVFVAKDELLNLPL-LGWLMRLLGCIFIDRKNAKD 75
Query: 61 REIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFEL----GCTVCPVAIK 114
L + ++ + +LIFPEGT + FKKGAF L G + PVAI
Sbjct: 76 AANTLEYLVELLR--EGELVLIFPEGTRSRGGELLPFKKGAFRLAREAGVPIVPVAIS 131
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 80.9 bits (200), Expect = 7e-20
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 6 VFVANHTSMIDFIIL-----EQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKD 60
+ VANH S +D ++L ++ + +K +V LL +L +G I+ +RS
Sbjct: 2 LVVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPLL-GWLLRLLGAIFIDRSN--- 57
Query: 61 REIVARKLRDHVQGTDNN-PLLIFPEGTCVNNHYTVMFKKGAFEL----GCTVCPVAIKY 115
LR+ V+ LLIFPEGT + FKKGA L G + PVAI+
Sbjct: 58 GRKARAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVAIRG 117
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 63.8 bits (156), Expect = 8e-13
Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 35/180 (19%)
Query: 6 VFVANHTSMIDFIILEQMTAFAVIMQKHPGWVG---LLQ----STILESVGCIWFNRSEA 58
+ VANH S +D ++L + + +V L + +L +G I +R
Sbjct: 27 IIVANHQSYLDPLVL------GAALPRPIRFVAKKELFKIPFLGWLLRLLGAIPIDRGNG 80
Query: 59 KDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVM-FKKGAFEL----GCTVCPVAI 113
+ R+ + ++ + ++IFPEGT + ++ FK GAF L G + PVAI
Sbjct: 81 RSAREALREAIEALK--EGESVVIFPEGT-RSRDGELLPFKSGAFRLAKEAGVPIVPVAI 137
Query: 114 KYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTLRPGETAIEFAERVRDII 173
K+ V EP E A E + +R+ +
Sbjct: 138 SGT----WGSLPKGKKLP----------RPGRVTVRIGEPIPPEGLELAEEDRKELREKV 183
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 50.3 bits (120), Expect = 1e-07
Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 6 VFVANHTSMIDFIILE------QMTAFAV--IMQKHPGWVGLLQSTILESVGCIWFNRSE 57
+ VANH S +D ++L F + K P +G L L +G I E
Sbjct: 67 LVVANHQSFLDPLLLSLALPRRGPVRFVAKKELFKVP-LLGWL----LRLLGAI-PVDRE 120
Query: 58 AKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVM-FKKGAF----ELGCTVCPVA 112
D E + + G + L+IFPEGT ++ FK+GA E G + PVA
Sbjct: 121 NPDDETLRAAVARLKAGGRS--LVIFPEGTRSRGGEELLPFKRGAARLALEAGVPIVPVA 178
Query: 113 IKY 115
I
Sbjct: 179 IVG 181
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 45.8 bits (109), Expect = 1e-06
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 6 VFVANHTSMIDFIILEQMTA--FAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREI 63
+ VANH S +D + L I +K W+ + + G I+ +R +
Sbjct: 19 LVVANHQSNLDPLTLSAAFPPPIVFIAKKELKWIPFFGIMLWLT-GAIFIDRENIRAIAT 77
Query: 64 VARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFEL----GCTVCPVAI 113
+ + ++ + +FPEGT + FKKGAF + G + PV +
Sbjct: 78 ALKAAIEVLK--QGRSIGVFPEGTRSRGRDILPFKKGAFHIAIKAGVPILPVVL 129
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 44.7 bits (106), Expect = 7e-06
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 18/130 (13%)
Query: 6 VFVANHTSMIDFIILEQMT-------AFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEA 58
+FV+NH+S D +IL + + ++ ++ SV RS A
Sbjct: 29 LFVSNHSSWWDGLILFLLLERGLRRDVYGLMDEELLERYPFFTRLGAFSVDRDS-PRSAA 87
Query: 59 KDREIVARKLRDHVQGTDNNPLLIFPEGTCVN-NHYTVMFKKGAFELGC----TVCPVAI 113
K + VAR L + + IFPEGT + + FK G L + PVA+
Sbjct: 88 KSLKYVARLLSKP-----GSVVWIFPEGTRTRRDKRPLQFKPGVAHLAEKAGVPIVPVAL 142
Query: 114 KYNKIFVDAF 123
+Y + F
Sbjct: 143 RYTFELFEQF 152
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 35.7 bits (83), Expect = 0.009
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 6 VFVANHTSMIDFIILEQMTAFA--------VIMQKHPGWVGLLQSTILESVGCIWF-NRS 56
+ ++NH S +D+++L M A ++++ + L +G F R
Sbjct: 27 LIISNHRSEVDWLVL-WMLADRFGRLGRLKIVLKDSLKYPPLGGWGWQ--LGEFIFLKRK 83
Query: 57 EAKDREIVARKLRDHVQGTDNNPLLIFPEGT 87
KD + + R+L+ + LLIFPEGT
Sbjct: 84 WEKDEKTIKRQLKRLKDSPEPFWLLIFPEGT 114
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 35.5 bits (82), Expect = 0.011
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 20/119 (16%)
Query: 6 VFVANHTSMIDFIILEQM-TAFAVIMQKH----P--GWVGLLQSTILESVGCIWFNRSEA 58
V+V+NH S +D L + F I + P GW + G I R +
Sbjct: 53 VYVSNHQSFLDIYTLFHLGRPFKFISKTSIFLIPIIGWAMYM-------TGHIPLKRMDR 105
Query: 59 KDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFEL----GCTVCPVAI 113
+ + ++ + ++ + FPEGT + FKKGAF + G V P+ +
Sbjct: 106 RSQLECLKRCMELLK--KGASVFFFPEGTRSKDGKLAAFKKGAFSVAAKTGVPVVPITL 162
>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ABO13168. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Acinetobacter baumannii ATCC 17978 locus ABO13168
putative acyltransferase, and similar proteins.
Length = 163
Score = 33.7 bits (78), Expect = 0.028
Identities = 35/142 (24%), Positives = 49/142 (34%), Gaps = 29/142 (20%)
Query: 2 RPKQVF-VANHTSMIDFIILEQMTAFAV--------IMQKHPGWVGLLQSTILESVGCIW 52
+PK V A HTS DF++ A + KH + L + +G I
Sbjct: 19 KPKFVVIGAPHTSNWDFVL----GLLAAFALGLKISFLGKHSLFKPPL-GPFMRWLGGIP 73
Query: 53 FNRSEAKDR-EIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKG----AFELGCT 107
+RS A E V + R + L I PEGT +K G A G
Sbjct: 74 VDRSRAGGLVEQVVEEFRRREEFV----LAIAPEGT---RSKVDKWKTGFYHIARGAGVP 126
Query: 108 VCPVAIKYNK---IFVDAFWNS 126
+ V + Y + F S
Sbjct: 127 ILLVYLDYKRKTVGIGPLFEPS 148
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 33.4 bits (77), Expect = 0.048
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 26/113 (23%)
Query: 6 VFVANH-TSMID-FIILEQM------TAFAVIMQKHP-GWVGLLQSTILESVGCIWFNR- 55
+F+ NH ++ID ++ + A A + + GW +LES G I R
Sbjct: 31 IFLGNHPNALIDPLLLAATLRRPVRFLAKADLFKNPLIGW-------LLESFGAIPVYRP 83
Query: 56 -------SEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGA 101
V + + ++ + IFPEG + + K GA
Sbjct: 84 KDLARGGIGKISNAAVFDAVGEALK--AGGAIGIFPEGGSHDRPRLLPLKAGA 134
>gnl|CDD|153255 cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are such LPLATs as dihydroxyacetone phosphate
acyltransferase (DHAPAT, also known as 1
glycerol-3-phosphate O-acyltransferase 1) and similar
proteins.
Length = 205
Score = 29.8 bits (68), Expect = 0.79
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 60/151 (39%)
Query: 6 VFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGL--------------LQSTILESVGCI 51
V + H S +DF++L + I+ +GL + T+L +G
Sbjct: 25 VLLPTHRSYLDFLLL------SFILF----SLGLPLPHIAAGENLNIPILGTLLRRLGAF 74
Query: 52 WFNRSEAKD-------REIVARKLRDHVQGTDNNPLLIFPEGT----------------- 87
+ RS KD +E V L++ PL F EGT
Sbjct: 75 FIRRSFGKDPLYRAVLQEYVQELLKNGQ------PLEFFIEGTRSRTGKLLPPKLGLLSV 128
Query: 88 CVNNHYTVMFKKGAFELGCTVCPVAIKYNKI 118
V K + + PV+I Y+++
Sbjct: 129 VVE----AYLKGSVPD--VLIVPVSISYDRV 153
>gnl|CDD|233882 TIGR02474, pec_lyase, pectate lyase, PelA/Pel-15E family. Members
of this family are isozymes of pectate lyase (EC
4.2.2.2), also called polygalacturonic transeliminase
and alpha-1,4-D-endopolygalacturonic acid lyase [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 290
Score = 28.6 bits (64), Expect = 2.6
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 49 GCIWFNRSEAKDREIVARKLRDHVQGTDNNPLL 81
G WF+ S + V + +L
Sbjct: 211 GVAWFDTSRIRGYAYVKSDAAYPLVPEPGAKVL 243
>gnl|CDD|222220 pfam13559, DUF4129, Domain of unknown function (DUF4129). This
presumed domain is found at the C-terminus of proteins
that contain a transglutaminase core domain. The
function of this domain is unknown. The domain has a
conserved TXXE motif.
Length = 72
Score = 26.4 bits (59), Expect = 3.5
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 156 LRPGETAIEFAERVRD 171
RP ET EFA R+
Sbjct: 17 RRPSETPREFARRLAA 32
>gnl|CDD|215118 PLN02177, PLN02177, glycerol-3-phosphate acyltransferase.
Length = 497
Score = 28.3 bits (63), Expect = 3.6
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Query: 2 RPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQST---ILESVGCIWFNRSEA 58
+P +FV NH +++D ++ AV + + V S ++ + + +R
Sbjct: 300 QPGVLFVCNHRTVLDPVVT------AVALGRKISCVTYSISKFSELISPIKAVALSRERE 353
Query: 59 KDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAI 113
KD + R L + L+I PEGT + + F EL + PVAI
Sbjct: 354 KDAANIKRLLEE-------GDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAI 401
>gnl|CDD|237426 PRK13558, PRK13558, bacterio-opsin activator; Provisional.
Length = 665
Score = 28.3 bits (63), Expect = 3.7
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 157 RPGETAIEFAERVRDIISVR--AGLKKVPWDGYLKYSRPS 194
PGET EF + + ++ R L+K GY ++ R
Sbjct: 592 DPGETPDEFRASLENDLTDRQLTALQKAYVSGYFEWPRRV 631
>gnl|CDD|215320 PLN02588, PLN02588, glycerol-3-phosphate acyltransferase.
Length = 525
Score = 28.0 bits (62), Expect = 3.8
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 6 VFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ--STILESVGCIWFNRSEAKDREI 63
+FV NH +++D + + ++A+ + L S +L + + R KD +
Sbjct: 330 LFVCNHRTLLDPLYI----SYALRKKNIKAVTYSLSRLSELLAPIKTVRLTRDRVKDGQA 385
Query: 64 VARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNKIF 119
+ + L QG L++ PEGT Y + F E+ + PVAI + F
Sbjct: 386 MEKLLS---QGD----LVVCPEGTTCREPYLLRFSPLFSEVCDVIVPVAIDSHVTF 434
>gnl|CDD|240389 PTZ00374, PTZ00374, dihydroxyacetone phosphate acyltransferase;
Provisional.
Length = 1108
Score = 27.9 bits (62), Expect = 4.4
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 6 VFVANHTSMIDFIILEQMTAFAVIMQKHPGWV---------GLLQSTILESVGCIWFNRS 56
V + H S IDFII MT +M V G + +T++ G + RS
Sbjct: 632 VLLPLHRSYIDFII---MTYLLAVMGLPLPHVCAGDDFLRMGPI-ATLMRGSGAFFMRRS 687
Query: 57 EAKDREIVARKLRDHVQG--TDNNPLLIFPEGT 87
+D + A +++V+ PL F EGT
Sbjct: 688 -FRDDPLYAALFKEYVRHLVLRRRPLEFFIEGT 719
>gnl|CDD|183061 PRK11260, PRK11260, cystine transporter subunit; Provisional.
Length = 266
Score = 27.8 bits (62), Expect = 4.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 163 IEFAERVRDIISVRAGLKKVPWDGYL 188
+EFAE + + V+A LK WDG L
Sbjct: 68 VEFAEALAKHLGVKASLKPTKWDGML 93
>gnl|CDD|219207 pfam06864, PAP_PilO, Pilin accessory protein (PilO). This family
consists of several enterobacterial PilO proteins. The
function of PilO is unknown although it has been
suggested that it is a cytoplasmic protein in the
absence of other Pil proteins, but PilO protein is
translocated to the outer membrane in the presence of
other Pil proteins. Alternatively, PilO protein may form
a complex with other Pil protein(s). PilO has been
predicted to function as a component of the pilin
transport apparatus and thin-pilus basal body. This
family does not seem to be related to pfam04350.
Length = 414
Score = 27.8 bits (62), Expect = 4.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 155 TLRPGETAIEFAERVRDIISVRA 177
PG T +F++RVR+I
Sbjct: 267 ERTPGGTVADFSQRVREIFDQTP 289
>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and
modification].
Length = 552
Score = 27.6 bits (61), Expect = 6.8
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 23/114 (20%)
Query: 22 QMTAFAVIMQKHPGWVGLLQSTI------LESVGCI------------WFNRSEAKDREI 63
++TA + + W GL++S I LE+V I +N + E
Sbjct: 363 EITAMSSCEEDFLKWEGLVESKIRILVSKLEAVDDILYAHPFPKAFRKVYNCVAEESIEK 422
Query: 64 VARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNK 117
+ + V + + M + ++ CT + +
Sbjct: 423 IGSGVTLEVAYESTDHEKL---ANDTVPEEESM--EDGMKVYCTTFYIGLDVIP 471
>gnl|CDD|178115 PLN02499, PLN02499, glycerol-3-phosphate acyltransferase.
Length = 498
Score = 27.5 bits (61), Expect = 7.1
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 6 VFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ--STILESVGCIWFNRSEAKDREI 63
+FV H +++D ++L V+ + P + S IL + + R R++
Sbjct: 291 LFVCTHRTLMDPVVLS-----TVLGRSIPAVTYSISRLSEILSPIPTVRLTR----IRDV 341
Query: 64 VARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKY 115
A K++ + D L++ PEGT + + F EL + PVA+ Y
Sbjct: 342 DAEKIKRELARGD---LVVCPEGTTCREPFLLRFSALFAELTDRIVPVAMNY 390
>gnl|CDD|218071 pfam04409, DUF530, Protein of unknown function (DUF530). Family of
hypothetical archaeal proteins.
Length = 512
Score = 27.2 bits (60), Expect = 7.3
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 156 LRPGETAIEFAERVRDIISVRAGLKKVPWDGYLKYSRPSPKHRER 200
LR + +E ++ IS+ K + D + Y S RER
Sbjct: 337 LRELKEDLEKESEIKKHISIDVPFKLLLLDLFRYYLLTSEDERER 381
>gnl|CDD|215295 PLN02538, PLN02538, 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase.
Length = 558
Score = 27.3 bits (61), Expect = 7.8
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 101 AFELGCTVCPVAIKYNKIFVDAFWNSRKQSF---TMHLLQLMTSWAV 144
F G + +A+ KIF + K++F T+HL+ L++ V
Sbjct: 94 IFAQGAKLVDLALASGKIFEGEGFKYIKEAFATGTLHLIGLLSDGGV 140
>gnl|CDD|240337 PTZ00261, PTZ00261, acyltransferase; Provisional.
Length = 355
Score = 26.8 bits (59), Expect = 9.7
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 27/116 (23%)
Query: 7 FVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQST---------ILESVG--CIWFNR 55
+V NHTS D +T F ++ L++S+ + + VG + F
Sbjct: 133 YVGNHTSFWDVYAFIGLTPFRHLLNTRT----LMKSSLRKIPIFGGVFDRVGHFPVHFKS 188
Query: 56 SEA------KDRE-IVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVM--FKKGAF 102
K+++ V + + H++ + L FPEG +N H V+ F+ G F
Sbjct: 189 DSDGNFEVDKEKQAQVQQAIDAHLRLGGS--LAFFPEGA-INKHPQVLQTFRYGTF 241
>gnl|CDD|204376 pfam10017, DUF2260, Uncharacterized conserved protein (DUF2260).
This domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 125
Score = 26.0 bits (58), Expect = 9.8
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 20/74 (27%)
Query: 103 ELGCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTLRPGETA 162
ELG P A ++ A +N + MHL S QT+R G
Sbjct: 36 ELGGDFDPDAFEH-----RARYNEEEGRIEMHL----VS---------RRDQTVRLGGET 77
Query: 163 IEFA--ERVRDIIS 174
I FA E + S
Sbjct: 78 IHFAAGETIHTENS 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.431
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,067,999
Number of extensions: 1017775
Number of successful extensions: 1089
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1072
Number of HSP's successfully gapped: 34
Length of query: 216
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 123
Effective length of database: 6,812,680
Effective search space: 837959640
Effective search space used: 837959640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.8 bits)