RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 027981
         (216 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 29.2 bits (65), Expect = 0.34
 Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 19/101 (18%)

Query: 6   VFVANHTSMIDFIILEQMTAFA--------VIMQKHPGWVGLLQSTILESVGCIWFNRS- 56
           V ++NH +  D  I+  +            + +         L          I      
Sbjct: 133 VLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKK 192

Query: 57  --------EAKDREIVARKLRD--HVQGTDNNPLLIFPEGT 87
                       R+   R L++   +    +  + I P G 
Sbjct: 193 HMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGG 233


>d1kjpa_ d.92.1.2 (A:) Thermolysin {Bacillus thermoproteolyticus
           [TaxId: 1427]}
          Length = 316

 Score = 27.6 bits (61), Expect = 1.2
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 113 IKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLE 152
           + Y++ + +AFWN  +  +     Q     +   DV   E
Sbjct: 104 VHYSQGYNNAFWNGSQMVYGDGDGQTFIPLSGGIDVVAHE 143


>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia
           pseudomallei [TaxId: 28450]}
          Length = 406

 Score = 26.5 bits (58), Expect = 3.1
 Identities = 11/97 (11%), Positives = 23/97 (23%), Gaps = 2/97 (2%)

Query: 53  FNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVA 112
           F R    D E VA     H  G  +        G         +  +G            
Sbjct: 227 FARMAMNDEETVALIAGGHTFGKTHGAGPASNVGAEP--EAAGIEAQGLGWKSAYRTGKG 284

Query: 113 IKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVW 149
                  ++  W +    ++ +  + +  +       
Sbjct: 285 ADAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTKS 321


>d2i6ha1 a.118.8.5 (A:1-179) Hypothetical protein Atu0120
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 179

 Score = 25.4 bits (55), Expect = 4.6
 Identities = 19/131 (14%), Positives = 33/131 (25%), Gaps = 12/131 (9%)

Query: 52  WFNRSEAKDREIVARKLRDHVQGTDN--NPLLIFPEGT-----CVNNHYTVMFKKGA--F 102
           WF++  A D     R    H        +  L   E +      ++      F+  A  +
Sbjct: 24  WFDKDAAFDNHFHDRFRDAHFAAARRELDGWLEGAESSLALMLLLDQFPRNCFRGTAHMY 83

Query: 103 ELGCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTLRPGETA 162
                    A +  +   D   +   + F                           G   
Sbjct: 84  ATDPLARFFADEAIRRGHDQAVSEDLRVFFYLPFSHAEDI---AAQQRACDLNQPLGGLY 140

Query: 163 IEFAERVRDII 173
           +  AE  RDI+
Sbjct: 141 LHHAEEHRDIV 151


>d1qhda2 b.19.1.1 (A:149-332) vp6, the major capsid protein of group
           A rotavirus {Bovine rotavirus [TaxId: 10927]}
          Length = 184

 Score = 24.9 bits (54), Expect = 7.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 149 WYLEPQTLRPGETAIEF 165
           WY  P  LRP    IEF
Sbjct: 99  WYFNPVILRPNNVEIEF 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 832,395
Number of extensions: 36689
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 6
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)