BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027982
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum
GN=elmoA PE=1 SV=1
Length = 977
Score = 115 bits (288), Expect = 3e-25, Method: Composition-based stats.
Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 19/186 (10%)
Query: 40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 99
Q R + + +R V F+ +H L LW+ TYP +L +S+QWK+MG+QG DP T
Sbjct: 362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421
Query: 100 DFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLE 159
DFR G L+NL++FA+ ++ F++++ Q R + EYP A AG+ +TF L +
Sbjct: 422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQ-IDRKEREYPTATAGIVLTFELYNSIFKM 480
Query: 160 AT---KPRTFVRSV---------------FLQMLSDNEWAFDLLYCVAFVVMDKQWLERN 201
T P S F + + AF+ +YC F ++D W + N
Sbjct: 481 GTPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQILDSTWDDMN 540
Query: 202 ATYMEF 207
TYM F
Sbjct: 541 GTYMHF 546
>sp|Q54RS7|ELMOC_DICDI ELMO domain-containing protein C OS=Dictyostelium discoideum
GN=elmoC PE=4 SV=1
Length = 618
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 16/190 (8%)
Query: 36 LTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGK 95
+T +Q++ ++ L + ++++ PDH+E L+ LW+ YP+QE S WK+ G+Q
Sbjct: 357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415
Query: 96 DPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNIT---FML 152
DP+ DFRG G + L NL+ + + Q +L + D +YPFAVAG+NI+ F +
Sbjct: 416 DPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQ------DRDYPFAVAGINISNLIFEV 469
Query: 153 MQMLDLEATKPRTFVR------SVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYME 206
Q+ + +P ++ M N+ AF+ LY + F ++D W++ NATYM
Sbjct: 470 FQISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMM 529
Query: 207 FNVRIHLLFS 216
F + I L S
Sbjct: 530 FPLVIKKLKS 539
>sp|Q54VR8|ELMOB_DICDI ELMO domain-containing protein B OS=Dictyostelium discoideum
GN=elmoB PE=4 SV=1
Length = 284
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 45 RRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGA 104
+ ++ + K+ +D + +H+ +L LW A PD +S +W +G+QG DP+TDFRG
Sbjct: 108 KSIEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGM 167
Query: 105 GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPR 164
G + L+NL++F+ S + +L+ K YPFA+ G+NIT +++ ++D K
Sbjct: 168 GILGLDNLIYFSTQHSEDAREILKNSNSKCC---YPFAITGINITALVLNLIDKPHFKIY 224
Query: 165 TFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNA-TYMEFN 208
F L F+ LY + F+ D+ + + + MEFN
Sbjct: 225 FFKNGSTLTQ-------FNELYSLVFISFDRFYQSKKPKSIMEFN 262
>sp|Q8BGF6|ELMD2_MOUSE ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2
SV=1
Length = 293
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 12/194 (6%)
Query: 21 VCFKRKGTYERICINLTPQQAERLRRLKHRM----KVYFDASRPDHQEALRALWAATYPD 76
+C ++ +++ IC+ Q ++L H + K +D++ H++ L LW+ P
Sbjct: 83 ICSEKDTSFQ-ICMRTCLLQITGYKQLYHDVENVRKKPYDSANAQHEKMLLKLWSLLMPT 141
Query: 77 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAD 136
++L IS QW ++G+QG DP TDFRG G + L NL++F++ +++ ++L + +
Sbjct: 142 KKLTARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLG 201
Query: 137 WEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQ 196
Y +A+ G+N+T M +L EA K + F+ + E F YC DK
Sbjct: 202 --YSYAIVGINLTEMAYSLLKSEALKLHLY---NFVPGVPTME-HFHQFYCYLVYEFDKF 255
Query: 197 WLERNA-TYMEFNV 209
WLE + M FN+
Sbjct: 256 WLEEEPESIMYFNL 269
>sp|Q8IZ81|ELMD2_HUMAN ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1
SV=1
Length = 293
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 55 FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLF 114
+D+ H+E L LW P ++L+ IS QW E+G+QG DP TDFRG G + L NL++
Sbjct: 120 YDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVY 179
Query: 115 FAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM 174
F++ +++ ++L + + Y +A+ G+N+T M +L EA K + +
Sbjct: 180 FSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALKFHLYNLVPGIPT 237
Query: 175 LSDNEWAFDLLYCVAFVVMDKQWLERNA-TYMEFNV 209
+ F YC DK W E + M FN+
Sbjct: 238 MEH----FHQFYCYLVYEFDKFWFEEEPESIMYFNL 269
>sp|Q08DZ3|ELMD2_BOVIN ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=1 SV=1
Length = 293
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 7/156 (4%)
Query: 55 FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLF 114
+D+ H++ L LW P ++L IS QW ++G+QG DP TDFRG G + L NL++
Sbjct: 120 YDSDNLQHEKLLIKLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVY 179
Query: 115 FAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM 174
F++ +++ ++L + + Y +A+ G+N+T M +L EA K F F+
Sbjct: 180 FSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALK---FHLYNFVPG 234
Query: 175 LSDNEWAFDLLYCVAFVVMDKQWL-ERNATYMEFNV 209
+ E F YC DK W E+ + M FNV
Sbjct: 235 IPTME-HFHQFYCYLVYEFDKFWFEEKPESIMYFNV 269
>sp|Q5NVD7|ELMD1_PONAB ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2
SV=1
Length = 326
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 87/184 (47%), Gaps = 26/184 (14%)
Query: 41 AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 100
E+LRR +D+ P H+E L LW P+ L IS QW E+G+QG DP TD
Sbjct: 119 VEKLRREP------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172
Query: 101 FRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRADWE---------YPFAVAG 145
FRG G + L NL +FA+ +T+ Q++L + +A+WE Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVG 232
Query: 146 VNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNAT-Y 204
+NIT + +L A K + + LS F +C K W+E +
Sbjct: 233 INITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDI 288
Query: 205 MEFN 208
MEFN
Sbjct: 289 MEFN 292
>sp|Q54UP9|ELMOD_DICDI Ankyrin repeat and ELMO domain-containing protein D
OS=Dictyostelium discoideum GN=elmoD PE=4 SV=1
Length = 1267
Score = 87.8 bits (216), Expect = 5e-17, Method: Composition-based stats.
Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 6/170 (3%)
Query: 40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 99
Q +++ L K ++ P HQ L LW+ +P+Q + W+ +G+Q KDPS+
Sbjct: 286 QCHKIQGLIMDSKTPYNKDEPSHQRLLETLWSTLFPNQVFQ-RSHENWQIIGFQNKDPSS 344
Query: 100 DFRGAGFISLENLLFFAKTFSTSFQR-LLRKQGGKRADWEYPFAVAGVNITFMLMQMLD- 157
DFRG G L++L++ A+ F L+ +Q A++ YP+A +G+ +T L++ +
Sbjct: 345 DFRGMGLAGLKHLIYLAQNHKDMFMNPLINRQ--PEANY-YPYATSGIQVTSFLVECVKP 401
Query: 158 LEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEF 207
+ + + V +L ++E A + +YCV + W + NATYM F
Sbjct: 402 INISANHSDVIGQIYPILFESENALNEIYCVLMEIFGIVWKDWNATYMIF 451
>sp|Q0IIE6|ELMD1_BOVIN ELMO domain-containing protein 1 OS=Bos taurus GN=ELMOD1 PE=2 SV=1
Length = 326
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 26/184 (14%)
Query: 41 AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 100
E+LRR +D+ P H+E L LW P+ L IS QW E+G+QG DP TD
Sbjct: 119 VEKLRRES------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172
Query: 101 FRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRADWE---------YPFAVAG 145
FRG G + L NL +FA+ + + Q++L + +A+WE Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVG 232
Query: 146 VNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNAT-Y 204
+NIT + +L A K + + LS F +C K W+E +
Sbjct: 233 INITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDI 288
Query: 205 MEFN 208
MEFN
Sbjct: 289 MEFN 292
>sp|Q8N336|ELMD1_HUMAN ELMO domain-containing protein 1 OS=Homo sapiens GN=ELMOD1 PE=2
SV=3
Length = 334
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 90/192 (46%), Gaps = 34/192 (17%)
Query: 41 AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 100
E+LRR +D+ P H+E L LW P+ L IS QW E+G+QG DP TD
Sbjct: 119 VEKLRR------EAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172
Query: 101 FRGAGFISLENLLFFAKTFSTSFQRLL------------RKQGGK--RADWE-------- 138
FRG G + L NL +FA+ +T+ Q++L +++ K +A+WE
Sbjct: 173 FRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAI 232
Query: 139 -YPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQW 197
Y FA+ G+NIT + +L A K + + LS F +C K W
Sbjct: 233 GYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFW 288
Query: 198 LERNAT-YMEFN 208
+E + MEFN
Sbjct: 289 IEEDPMDIMEFN 300
>sp|Q3V1U8|ELMD1_MOUSE ELMO domain-containing protein 1 OS=Mus musculus GN=Elmod1 PE=2
SV=2
Length = 326
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 26/184 (14%)
Query: 41 AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 100
E+LRR +D+ P H+E L LW P+ L +S QW E+G+QG DP TD
Sbjct: 119 VEKLRREP------YDSDNPQHEEMLLKLWELLKPNTPLESRVSKQWCEIGFQGDDPKTD 172
Query: 101 FRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRA------DWE---------YPFAVAG 145
FRG G + L NL +FA+ +T Q++L + +WE Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDATVAQQVLSDSVHPKCSKFSKIEWEKKKMDKAIGYSFAIVG 232
Query: 146 VNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNAT-Y 204
+NIT + +L A K + + LS F +C K W+E +
Sbjct: 233 INITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDI 288
Query: 205 MEFN 208
MEFN
Sbjct: 289 MEFN 292
>sp|Q499U2|ELMO3_RAT Engulfment and cell motility protein 3 OS=Rattus norvegicus
GN=Elmo3 PE=2 SV=1
Length = 720
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATY-PDQEL--HGLISD--------QWK 88
QA L L+ RM+ D + +E L+AL A + PD E GL +D +++
Sbjct: 286 QALTLGLLEPRMRTPLDPYSQEQREQLQALRQAAFEPDGESLGTGLSADRRRSLCVREFR 345
Query: 89 EMGWQGKDPSTDFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGV 146
++G+ P+ D G ++L+N+L+F++ +++ R + + + E PFA + +
Sbjct: 346 KLGFSNSSPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSI 405
Query: 147 NITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYME 206
+T +L ++L + +P + F M + +F L+CVA +++K W E AT +
Sbjct: 406 QLTVLLCELLHV--GEPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMRATQED 463
Query: 207 FN 208
F+
Sbjct: 464 FD 465
>sp|A6QR40|ELMO3_BOVIN Engulfment and cell motility protein 3 OS=Bos taurus GN=ELMO3 PE=2
SV=1
Length = 652
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 91/182 (50%), Gaps = 15/182 (8%)
Query: 40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATY-PDQELHG----------LISDQWK 88
QA L L+ RM+ D + +E L+AL A + P+ E G L + +++
Sbjct: 286 QALMLGLLEPRMRTPLDPYSQEQREQLQALRQAAFEPEGESVGAGLSADRRRSLCAREFR 345
Query: 89 EMGWQGKDPSTDFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGV 146
++G+ +P+ D G ++L+N+L+F++ +++ R + + + E PFA + +
Sbjct: 346 KLGFSNSNPAQDLERVPPGLLALDNMLYFSRQAPSAYSRFVLENSSREDKHECPFARSSI 405
Query: 147 NITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYME 206
+T +L +L + +P + F M + +F L+CV+ +++K W E AT +
Sbjct: 406 QLTVLLCDLLHV--GEPCSETAQDFSPMFFGQDQSFHELFCVSIQLLNKTWKEMRATQED 463
Query: 207 FN 208
F+
Sbjct: 464 FD 465
>sp|Q8BYZ7|ELMO3_MOUSE Engulfment and cell motility protein 3 OS=Mus musculus GN=Elmo3
PE=1 SV=2
Length = 720
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATY-PDQEL--HGLISD--------QWK 88
QA L L+ RM+ D + ++ L+AL A + P+ E GL +D +++
Sbjct: 286 QALTLGLLEPRMRTPLDPYSQEQRDQLQALRQAAFEPEGESLGTGLSADRRRSLCVREFR 345
Query: 89 EMGWQGKDPSTDFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGV 146
++G+ +P+ D G ++L+N+L+F++ +++ R + + + E PFA + +
Sbjct: 346 KLGFSNSNPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSI 405
Query: 147 NITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYME 206
+T +L ++ L +P + F M + +F L+CVA +++K W E AT +
Sbjct: 406 QLTALLCEL--LRVGEPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMRATQED 463
Query: 207 FN 208
F+
Sbjct: 464 FD 465
>sp|Q96BJ8|ELMO3_HUMAN Engulfment and cell motility protein 3 OS=Homo sapiens GN=ELMO3
PE=2 SV=3
Length = 720
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 87/182 (47%), Gaps = 15/182 (8%)
Query: 40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYP---DQELHGLISD--------QWK 88
QA L L+ RM+ D + +E L+ L A + + GL +D +++
Sbjct: 286 QALMLGLLEPRMRTPLDPYSQEQREQLQVLRQAAFEVEGESSGAGLSADRRRSLCAREFR 345
Query: 89 EMGWQGKDPSTDFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGV 146
++G+ +P+ D G ++L+N+L+F++ +++ R + + + E PFA +
Sbjct: 346 KLGFSNSNPAQDLERVPPGLLALDNMLYFSRNAPSAYSRFVLENSSREDKHECPFARGSI 405
Query: 147 NITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYME 206
+T +L ++ L +P + F M + +F L+CV +++K W E AT +
Sbjct: 406 QLTVLLCEL--LRVGEPCSETAQDFSPMFFGQDQSFHELFCVGIQLLNKTWKEMRATQED 463
Query: 207 FN 208
F+
Sbjct: 464 FD 465
>sp|Q8BPU7|ELMO1_MOUSE Engulfment and cell motility protein 1 OS=Mus musculus GN=Elmo1
PE=1 SV=2
Length = 727
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 90/184 (48%), Gaps = 17/184 (9%)
Query: 30 ERICINLTPQ-QAERLRRLKHRMKVYFDA-SRPDHQEALRALWAATYPDQELHGLISDQW 87
+R+ + PQ QA+R + R ++ FDA S P++ + Y + +
Sbjct: 307 DRMMTKMDPQDQAQRDIIFELR-RIAFDAESEPNNSSGSMEKRKSMY---------TRDY 356
Query: 88 KEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVA 144
K++G+ +P+ DF G ++L+N+L+FAK ++ R++ + + E PF +
Sbjct: 357 KKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRS 416
Query: 145 GVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATY 204
+ +T ML ++L + T + F M ++ +F+ +C+ +++K W E AT
Sbjct: 417 SIELTKMLCEILKVGELPSETC--NDFHPMFFTHDRSFEEFFCICIQLLNKTWKEMRATS 474
Query: 205 MEFN 208
+FN
Sbjct: 475 EDFN 478
>sp|Q92556|ELMO1_HUMAN Engulfment and cell motility protein 1 OS=Homo sapiens GN=ELMO1
PE=1 SV=2
Length = 727
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 90/184 (48%), Gaps = 17/184 (9%)
Query: 30 ERICINLTPQ-QAERLRRLKHRMKVYFDA-SRPDHQEALRALWAATYPDQELHGLISDQW 87
+R+ + PQ QA+R + R ++ FDA S P++ + Y + +
Sbjct: 307 DRMMTKMDPQDQAQRDIIFELR-RIAFDAESEPNNSSGSMEKRKSMY---------TRDY 356
Query: 88 KEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVA 144
K++G+ +P+ DF G ++L+N+L+FAK ++ R++ + + E PF +
Sbjct: 357 KKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRS 416
Query: 145 GVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATY 204
+ +T ML ++L + T + F M ++ +F+ +C+ +++K W E AT
Sbjct: 417 SIELTKMLCEILKVGELPSETC--NDFHPMFFTHDRSFEEFFCICIQLLNKTWKEMRATS 474
Query: 205 MEFN 208
+FN
Sbjct: 475 EDFN 478
>sp|Q91YP6|ELMD3_MOUSE ELMO domain-containing protein 3 OS=Mus musculus GN=Elmod3 PE=2
SV=1
Length = 381
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 19/158 (12%)
Query: 55 FDASRPDHQEALRALW---AATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGF---IS 108
D+ P H L+ ++ + D LHG D W+++G+QG +P+TD RGAGF +
Sbjct: 164 LDSQNPTHGRVLQTIYKKLTGSKFDCALHG---DHWEDLGFQGANPATDLRGAGFLALLH 220
Query: 109 LENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVR 168
L L+ +KTF + Q + R ++PF + VNIT + +Q L E R
Sbjct: 221 LLYLVMDSKTFLMA-QEIFRL--SHHHIQQFPFCLMSVNITRIAIQALREECLSRECNRR 277
Query: 169 SVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYME 206
+ +++ Y F+ + + W + T ++
Sbjct: 278 QKVIPVVNS-------FYAATFLHLARVWRTQQKTILD 308
>sp|Q5RCC1|ELMO2_PONAB Engulfment and cell motility protein 2 OS=Pongo abelii GN=ELMO2
PE=2 SV=1
Length = 720
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 81 GLISDQWKEMGWQGK-DPSTDFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADW 137
+ + +K +G+ +P+ DF G ++L+N+L+ AK ++ R++ + +
Sbjct: 343 AMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH 402
Query: 138 EYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQW 197
E PF + + +T ML ++L + R+ + M ++ AF+ L+ + +++K W
Sbjct: 403 ECPFGRSAIELTKMLCEILQVGELPNEG--RNDYHPMFFTHDRAFEELFGICIQLLNKTW 460
Query: 198 LERNATYMEFN 208
E AT +FN
Sbjct: 461 KEMRATAEDFN 471
>sp|Q96JJ3|ELMO2_HUMAN Engulfment and cell motility protein 2 OS=Homo sapiens GN=ELMO2
PE=1 SV=2
Length = 720
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 81 GLISDQWKEMGWQGK-DPSTDFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADW 137
+ + +K +G+ +P+ DF G ++L+N+L+ AK ++ R++ + +
Sbjct: 343 AMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH 402
Query: 138 EYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQW 197
E PF + + +T ML ++L + R+ + M ++ AF+ L+ + +++K W
Sbjct: 403 ECPFGRSAIELTKMLCEILQVGELPNEG--RNDYHPMFFTHDRAFEELFGICIQLLNKTW 460
Query: 198 LERNATYMEFN 208
E AT +FN
Sbjct: 461 KEMRATAEDFN 471
>sp|A4FUD6|ELMO2_BOVIN Engulfment and cell motility protein 2 OS=Bos taurus GN=ELMO2 PE=2
SV=1
Length = 720
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 81 GLISDQWKEMGWQGK-DPSTDFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADW 137
+ + +K +G+ +P+ DF G ++L+N+L+ AK ++ R++ + +
Sbjct: 343 AMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH 402
Query: 138 EYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQW 197
E PF + + +T ML ++L + R+ + M ++ AF+ L+ + +++K W
Sbjct: 403 ECPFGRSAIELTKMLCEILQVGELPNEG--RNDYHPMFFTHDRAFEELFGICIQLLNKTW 460
Query: 198 LERNATYMEFN 208
E AT +FN
Sbjct: 461 KEMRATAEDFN 471
>sp|Q8BHL5|ELMO2_MOUSE Engulfment and cell motility protein 2 OS=Mus musculus GN=Elmo2
PE=1 SV=1
Length = 732
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 81 GLISDQWKEMGWQGK-DPSTDFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADW 137
+ + +K +G+ +P+ DF G ++L+N+L+ AK ++ R++ + +
Sbjct: 355 AMYTKDYKMLGFTNHINPALDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH 414
Query: 138 EYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQW 197
E PF + + +T ML ++L + R+ + M ++ AF+ L+ + +++K W
Sbjct: 415 ECPFGRSAIELTKMLCEILQVGELPNEG--RNDYHPMFFTHDRAFEELFGICIQLLNKTW 472
Query: 198 LERNATYMEFN 208
E AT +FN
Sbjct: 473 KEMRATAEDFN 483
>sp|Q54WH5|ELMOE_DICDI ELMO domain-containing protein E OS=Dictyostelium discoideum
GN=elmoE PE=4 SV=1
Length = 1677
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 62 HQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFST 121
HQ L LW + G+ S+ W +G++ +P DF+ G ++L NL +F+K
Sbjct: 493 HQILLSDLWGSALSSYPFGGINSEHWLLLGFRSSNPMEDFKNTGVLALRNLSYFSKQHLQ 552
Query: 122 SFQRLLRKQ 130
FQ LL Q
Sbjct: 553 PFQSLLLTQ 561
>sp|Q5XIQ2|ELMD3_RAT ELMO domain-containing protein 3 OS=Rattus norvegicus GN=Elmod3
PE=2 SV=1
Length = 356
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 55 FDASRPDHQEALRALW---AATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLEN 111
D+ P H L+ ++ + D LHG D W+++G+QG +P+TD RG GF++L +
Sbjct: 164 LDSQNPTHGRVLQTIYKKLTGSKFDCALHG---DHWEDLGFQGANPATDLRGTGFLALLH 220
Query: 112 LLFFAKTFSTSF--QRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRS 169
LL+ T Q +LR ++PF + VNIT + +Q L E R
Sbjct: 221 LLYLVMDSKTLLMAQEILRL--SHHHIQQFPFCLMSVNITRIAIQALREECLSRECNRRR 278
Query: 170 VFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYME 206
+ +++ Y F+ + + W ++ T ++
Sbjct: 279 KVIPVVNS-------FYAATFLHLARMWRTQHNTILD 308
>sp|Q58DT5|ELMD3_BOVIN ELMO domain-containing protein 3 OS=Bos taurus GN=ELMOD3 PE=2 SV=1
Length = 381
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 10/110 (9%)
Query: 55 FDASRPDHQEALRALW---AATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLEN 111
D+ P H L+ ++ + D LHG D W+++G+QG +P+TD RGAGF++L +
Sbjct: 164 LDSQDPMHGRVLQTIYKKLTGSKFDCALHG---DHWEDLGFQGTNPATDLRGAGFLALLH 220
Query: 112 LLFFAKTFSTSF--QRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLE 159
LL+ T + +LR + ++PF + VNIT + +Q L E
Sbjct: 221 LLYLVMDSKTLLMAREILRL--SRHHIQQFPFCLMSVNITRIAIQALREE 268
>sp|Q96FG2|ELMD3_HUMAN ELMO domain-containing protein 3 OS=Homo sapiens GN=ELMOD3 PE=2
SV=2
Length = 381
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 55 FDASRPDHQEALRALW---AATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGF---IS 108
D+ P H L+ ++ + D LHG + W+++G+QG +P+TD RGAGF +
Sbjct: 164 LDSQDPVHGRVLQTIYKKLTGSKFDCALHG---NHWEDLGFQGANPATDLRGAGFLALLH 220
Query: 109 LENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLE 159
L L+ +KT + Q + R + ++PF + VNIT + +Q L E
Sbjct: 221 LLYLVMDSKTLPMA-QEIFRL--SRHHIQQFPFCLMSVNITHIAIQALREE 268
>sp|Q09292|ELMD3_CAEEL ELMO domain-containing protein C56G7.3 OS=Caenorhabditis elegans
GN=C56G7.3 PE=4 SV=2
Length = 322
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFA 142
+ W +G+Q P TDFRG G + L + F + + R + + ++P A
Sbjct: 172 VGAHWVTVGFQSATPHTDFRGCGVLGLLQMHTFTQRVPANLLRAIVLLATTEPN-DFPLA 230
Query: 143 VAGVNITFMLMQML 156
V +NIT +L+ L
Sbjct: 231 VVSINITSILLTQL 244
>sp|Q48CJ2|MSRA_PSE14 Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas syringae
pv. phaseolicola (strain 1448A / Race 6) GN=msrA PE=3
SV=1
Length = 215
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 20/109 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C LT L V ++ + ++ L+ W A P Q +
Sbjct: 83 FTPNPTYEEVCSGLTAHTEVVL--------VVYEPEKISYKSLLKVFWEAHNPTQGMR-- 132
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R + + L AK + FQ LRK G
Sbjct: 133 ----------QGNDIGTQYRSVIYCTTPKQLDAAKASAAEFQAELRKAG 171
>sp|Q4ZM24|MSRA_PSEU2 Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas syringae
pv. syringae (strain B728a) GN=msrA PE=3 SV=1
Length = 215
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 20/109 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C LT L V ++ ++ ++E L+ W P Q +
Sbjct: 83 FTPNPTYEEVCSGLTGHTEVVL--------VVYEPAKISYEELLKVFWEVHNPTQGMR-- 132
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R + + L AK + +FQ L K G
Sbjct: 133 ----------QGNDIGTQYRSVIYCTTPEQLDAAKASAETFQAQLNKAG 171
>sp|Q8TYZ5|TMCA_METKA Putative tRNA(Met) cytidine acetyltransferase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0146 PE=3 SV=1
Length = 855
Score = 35.4 bits (80), Expect = 0.31, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 12 TWIGKGLTCVCFKRKGTYERICINLTPQQAERLRR--------LKHRMKVYFDASRPDHQ 63
T GK +T + R+GT R I ++RR + M + DA
Sbjct: 530 TETGKIVTALQVAREGTIPRDVIT-------KMRRGYRPPGNVIPDLMVQHHDALDFPRM 582
Query: 64 EALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFF 115
+ LR + AT+PD HGL S KE+ K D+ G GF + E L F
Sbjct: 583 KGLRIVRIATHPDIMRHGLGSRALKELAKIAKKKDYDWIGTGFGANEELTRF 634
>sp|A8L177|MSRA_FRASN Peptide methionine sulfoxide reductase MsrA OS=Frankia sp. (strain
EAN1pec) GN=msrA PE=3 SV=1
Length = 221
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 20/104 (19%)
Query: 28 TYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQW 87
TYE C LT L V FD ++ E LR W A P Q +
Sbjct: 85 TYEEACSGLTGHTEAVL--------VVFDPAKVSFAELLRVFWEAHDPTQGMR------- 129
Query: 88 KEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R A + + E+ A +FQR+L G
Sbjct: 130 -----QGNDVGTQYRSAVYTTGEDQAAAALASRDAFQRVLTAAG 168
>sp|Q1I3L0|MSRA_PSEE4 Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas
entomophila (strain L48) GN=msrA PE=3 SV=1
Length = 222
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 20/109 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C LT L V FD ++ + + L W P Q +
Sbjct: 85 FTPNPTYEEVCSGLTGHTEVVL--------VVFDKNKVSYHDLLTMFWELHNPTQGMR-- 134
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R A + + L AKT +FQ L K G
Sbjct: 135 ----------QGNDVGTQYRSAIYCTSPQQLEEAKTSRDAFQAELSKAG 173
>sp|B1JE82|MSRA_PSEPW Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas putida
(strain W619) GN=msrA PE=3 SV=1
Length = 222
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C LT L V FD + ++E L W P Q +
Sbjct: 85 FTPNPTYEEVCSGLTGHTEVVL--------VVFDKDKVSYRELLAMFWELHNPTQGMR-- 134
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R A + + L AK +FQ L K G
Sbjct: 135 ----------QGNDVGTQYRSAIYCTSPQQLEEAKASRDAFQAELNKAG 173
>sp|C3LRL2|MSRA_VIBCM Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=msrA PE=3 SV=1
Length = 212
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C T ++V FD R E LRA W P Q +
Sbjct: 76 FTPNPTYEEVCSGKTGH--------TEVVRVIFDPERLPLTELLRAFWERHDPTQGMR-- 125
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQ 130
QG D T +R A + E+ A+ ++Q LL Q
Sbjct: 126 ----------QGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQ 163
>sp|Q9KP30|MSRA_VIBCH Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=msrA PE=3 SV=1
Length = 212
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C T ++V FD R E LRA W P Q +
Sbjct: 76 FTPNPTYEEVCSGKTGH--------TEVVRVIFDPERLPLTELLRAFWERHDPTQGMR-- 125
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQ 130
QG D T +R A + E+ A+ ++Q LL Q
Sbjct: 126 ----------QGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQ 163
>sp|A5F587|MSRA_VIBC3 Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=msrA PE=3 SV=1
Length = 212
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C T ++V FD R E LRA W P Q +
Sbjct: 76 FTPNPTYEEVCSGKTGH--------TEVVRVIFDPERLPLTELLRAFWERHDPTQGMR-- 125
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQ 130
QG D T +R A + E+ A+ ++Q LL Q
Sbjct: 126 ----------QGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQ 163
>sp|Q88QZ8|MSRA_PSEPK Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas putida
(strain KT2440) GN=msrA PE=3 SV=1
Length = 222
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C LT L V FD + ++E L W P Q +
Sbjct: 85 FTPHPTYEEVCSGLTGHTEVVL--------VVFDKDKVSYRELLAMFWELHNPTQGMR-- 134
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R A + + L AK +FQ L K G
Sbjct: 135 ----------QGNDIGTQYRSAIYCTSPEQLEQAKASRDAFQAELSKAG 173
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 72 ATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKT-----FSTSFQRL 126
++Y D +++++W G +G PST + FI NL T F+ +
Sbjct: 279 SSYNDLYEFNILNNEWILRGCKGNVPSTRYGHISFIHGNNLFILGGTNAEISFNDMYSCD 338
Query: 127 LRKQGGKRADWEYPFAVAGVNITFMLMQMLD 157
L+ D+ Y F ++ V +L++ +D
Sbjct: 339 LKNNEWSEVDFSYSFNISKVFCRSVLVESID 369
>sp|B0KJ25|MSRA_PSEPG Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas putida
(strain GB-1) GN=msrA PE=3 SV=1
Length = 222
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 23 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 82
F TYE +C LT L V FD + ++E L W P Q +
Sbjct: 85 FTPHPTYEEVCSGLTGHTEVVL--------VVFDKDKVSYRELLAMFWELHNPTQGMR-- 134
Query: 83 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R A + + L A+ +FQ L K G
Sbjct: 135 ----------QGNDVGTQYRSAIYCTSPEQLEQAEASRDAFQAELSKAG 173
>sp|Q7VRF5|SYK_BLOFL Lysine--tRNA ligase OS=Blochmannia floridanus GN=lysS PE=3 SV=1
Length = 485
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 105 GFISLENLLFFAKT-FSTSFQRLLRKQ----GGKRADWEYPFAVAGVNITFMLMQMLDLE 159
++ N++ F + F T +R+LRK G D+E PF ++I +M L
Sbjct: 259 AYVDYNNMIIFVQELFRTLTERILRKSVIEYGDYSLDFEKPFI--KMSIKEAIMYYLPDI 316
Query: 160 ATKPRTFVRSVF-----LQMLSDNEWAFDLLYCVAF 190
TK + VF ++ SDN+W + L+ V F
Sbjct: 317 RTKNIDDILVVFDILKFFKVPSDNQWTLEKLHMVLF 352
>sp|B7K079|MSRA_CYAP8 Peptide methionine sulfoxide reductase MsrA OS=Cyanothece sp.
(strain PCC 8801) GN=msrA PE=3 SV=1
Length = 217
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 20/104 (19%)
Query: 28 TYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQW 87
TY+ +C LT L V FD ++E L+ W + P Q +
Sbjct: 86 TYQEVCTGLTGHNEVVL--------VVFDPKIISYEELLKVFWESHNPTQGMR------- 130
Query: 88 KEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
QG D T +R ++ A+T +Q+ L + G
Sbjct: 131 -----QGNDVGTQYRSGIYVYSPQHKKAAETSKEVYQKALNQAG 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.138 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,514,440
Number of Sequences: 539616
Number of extensions: 3147784
Number of successful extensions: 7694
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 7634
Number of HSP's gapped (non-prelim): 49
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)