Query 027982
Match_columns 216
No_of_seqs 140 out of 376
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:28:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2998 Uncharacterized conser 100.0 5.9E-58 1.3E-62 396.1 14.2 207 2-215 64-276 (302)
2 PF04727 ELMO_CED12: ELMO/CED- 100.0 8.7E-52 1.9E-56 338.0 14.5 168 43-212 2-170 (170)
3 KOG2999 Regulator of Rac1, req 100.0 1.3E-35 2.8E-40 273.7 11.6 182 32-215 274-469 (713)
4 PF04844 Ovate: Transcriptiona 47.3 31 0.00068 23.4 3.4 39 94-160 1-39 (59)
5 KOG4404 Tandem pore domain K+ 43.2 83 0.0018 28.7 6.4 86 37-128 35-142 (350)
6 PF03735 ENT: ENT domain; Int 38.8 54 0.0012 23.2 3.7 31 36-70 26-56 (73)
7 PF11588 DUF3243: Protein of u 38.1 12 0.00027 27.1 0.3 27 49-76 40-66 (81)
8 PF08262 Lem_TRP: Leucophaea m 37.0 14 0.0003 16.2 0.3 6 89-94 3-8 (10)
9 KOG0673 Thymidylate synthase [ 36.0 45 0.00097 29.2 3.4 82 79-161 111-226 (293)
10 PHA02819 hypothetical protein; 23.9 75 0.0016 22.4 2.3 27 183-215 2-28 (71)
11 PF05083 LST1: LST-1 protein; 21.4 38 0.00082 23.9 0.4 9 94-102 58-66 (74)
12 PF15579 Imm32: Immunity prote 20.7 91 0.002 23.6 2.4 24 51-74 74-97 (102)
13 PF06073 DUF934: Bacterial pro 20.3 69 0.0015 24.5 1.7 25 89-118 45-69 (110)
No 1
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.9e-58 Score=396.12 Aligned_cols=207 Identities=50% Similarity=0.842 Sum_probs=193.2
Q ss_pred CCCccccccchhhhc-----cccccccccCCCcccccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCC
Q 027982 2 CADDATCGTPTWIGK-----GLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPD 76 (216)
Q Consensus 2 ~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~ 76 (216)
++++...|+.+|+|+ .+.|.|.+.+..+..++..+.+.|.+.++.+++++++|||.+|++|+++|++||+.++|+
T Consensus 64 ass~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~~~e~~~~~~yDs~n~~H~e~L~~lwk~~~p~ 143 (302)
T KOG2998|consen 64 ASSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQRLEELRQEPYDSDNPDHEELLLDLWKLLYPD 143 (302)
T ss_pred cccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhCCC
Confidence 468899999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCchhhhhhccCCCCCCCCcccchhhhHhhHHHHHhhchHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHh
Q 027982 77 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQML 156 (216)
Q Consensus 77 ~~~~~~~~~~W~~lGFQ~~dP~tDfRg~G~LgL~~LlyF~~~~~~~~~~il~~~~~~~~~~~yPfA~~~IniT~~L~~~L 156 (216)
++++++++++|++|||||+||+|||||+|+|||+||+||+++||+.+++++.+|. ++.|+|||||||||||.|++++|
T Consensus 144 ~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~s~--~~r~eYpfAVvgINIT~m~~qmL 221 (302)
T KOG2998|consen 144 KELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLKSR--HPRWEYPFAVVGINITFMAIQML 221 (302)
T ss_pred CccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHhcC--CCccCCceEEEeecHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999975 45699999999999999999999
Q ss_pred hhhcCC-CCccchhhhhhhcccchhhHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHhhc
Q 027982 157 DLEATK-PRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNVRIHLLF 215 (216)
Q Consensus 157 ~~~~~~-~~~~~~~~f~~ll~~~~~~F~ely~~~f~~f~~~W~~~~at~mdF~~Vl~~v~ 215 (216)
+.++.+ +.+..... ++++.+|+.|||++|..||++|+++++||||||.|++.++
T Consensus 222 ~~eal~~~~~~~~~~-----~~~~~~F~~lYc~af~~~d~~Wl~~~~simefn~Vlk~~~ 276 (302)
T KOG2998|consen 222 DLEALKKHFNNIVKV-----FETEPAFDLLYCYAFLEFDKQWLEQRATIMEFNTVLKSFR 276 (302)
T ss_pred Hhhhccccccccccc-----cccHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 999874 33333333 3788999999999999999999999999999999999764
No 2
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=100.00 E-value=8.7e-52 Score=338.04 Aligned_cols=168 Identities=39% Similarity=0.742 Sum_probs=152.0
Q ss_pred HHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCcccCCCCchhhhhhccCCCCCCCCcccchhhhHhhHHHHHhhchHH
Q 027982 43 RLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS 122 (216)
Q Consensus 43 ~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDfRg~G~LgL~~LlyF~~~~~~~ 122 (216)
.|+.|++++++|||++|++|+++|++||++++++.+.+++.+++|++|||||+||+|||||+|+|||+||+||+++||+.
T Consensus 2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~ 81 (170)
T PF04727_consen 2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE 81 (170)
T ss_pred hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence 57899999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcCCCCccchhhhhhh-cccchhhHHHHHHHHHHHHHHHHHhCC
Q 027982 123 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM-LSDNEWAFDLLYCVAFVVMDKQWLERN 201 (216)
Q Consensus 123 ~~~il~~~~~~~~~~~yPfA~~~IniT~~L~~~L~~~~~~~~~~~~~~f~~l-l~~~~~~F~ely~~~f~~f~~~W~~~~ 201 (216)
+++|+.+|.++.+..+||||+||||||.+|+++|+.+...+ .....+.+. +++.+.+|++|||++|.+|+++|++++
T Consensus 82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~f~elf~~~f~~f~~~W~~~~ 159 (170)
T PF04727_consen 82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDS--EFYKRINFLSFFSSLEAFEELFCACFQLFDRTWKEMN 159 (170)
T ss_pred HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCH--HHhhcccccccCccHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999877666899999999999999999999965432 222222222 567889999999999999999999999
Q ss_pred CCcccHHHHHH
Q 027982 202 ATYMEFNVRIH 212 (216)
Q Consensus 202 at~mdF~~Vl~ 212 (216)
||+|||++|+|
T Consensus 160 at~~dF~~V~~ 170 (170)
T PF04727_consen 160 ATIMDFNKVLK 170 (170)
T ss_pred CCHHHHHhhcC
Confidence 99999999986
No 3
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-35 Score=273.73 Aligned_cols=182 Identities=22% Similarity=0.450 Sum_probs=169.7
Q ss_pred ccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCccc-----------CCCCchhhhhhccCC-CCCCC
Q 027982 32 ICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQEL-----------HGLISDQWKEMGWQG-KDPST 99 (216)
Q Consensus 32 ~~~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~-----------~~~~~~~W~~lGFQ~-~dP~t 99 (216)
..++||++|...+..+..|+.++.|+.+++.+++++++.+.+|.++.. .....+..|++||.+ .||+.
T Consensus 274 ~~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~ 353 (713)
T KOG2999|consen 274 RPIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQ 353 (713)
T ss_pred chHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHH
Confidence 346999999999999999999999999999999999999999976432 235578999999999 89999
Q ss_pred Ccc--cchhhhHhhHHHHHhhchHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcCCCCccchhhhhhhccc
Q 027982 100 DFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSD 177 (216)
Q Consensus 100 DfR--g~G~LgL~~LlyF~~~~~~~~~~il~~~~~~~~~~~yPfA~~~IniT~~L~~~L~~~~~~~~~~~~~~f~~ll~~ 177 (216)
||- ++|+|+|+||+||+++||+.|.+|+.++++|.++++|||+.++|.+|.+||++|+.+. ++++...+|.||+|.
T Consensus 354 df~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge--~p~E~~~df~pmfFt 431 (713)
T KOG2999|consen 354 DFGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGE--PPDELDRDFIPMFFT 431 (713)
T ss_pred hcccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCC--CchhhcCccceeeec
Confidence 996 9999999999999999999999999999999999999999999999999999999964 466677789999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHhhc
Q 027982 178 NEWAFDLLYCVAFVVMDKQWLERNATYMEFNVRIHLLF 215 (216)
Q Consensus 178 ~~~~F~ely~~~f~~f~~~W~~~~at~mdF~~Vl~~v~ 215 (216)
++..|+|+||+|.++|+++|+||+||..||++|++||+
T Consensus 432 hd~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVr 469 (713)
T KOG2999|consen 432 HDTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVR 469 (713)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999996
No 4
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=47.32 E-value=31 Score=23.42 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=23.8
Q ss_pred CCCCCCCcccchhhhHhhHHHHHhhchHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhc
Q 027982 94 GKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEA 160 (216)
Q Consensus 94 ~~dP~tDfRg~G~LgL~~LlyF~~~~~~~~~~il~~~~~~~~~~~yPfA~~~IniT~~L~~~L~~~~ 160 (216)
+.||..|||. ++.+|+.+..-+ ..-.+-.+|...|.+++
T Consensus 1 S~DP~~DFr~------------------SM~EMI~~~~i~----------~~~~LeeLL~cYL~LN~ 39 (59)
T PF04844_consen 1 SSDPYEDFRE------------------SMVEMIEENGIR----------DWDDLEELLACYLSLNS 39 (59)
T ss_pred CCCHHHHHHH------------------HHHHHHHHcCCC----------CHHHHHHHHHHHHHhCC
Confidence 4689999885 356677764321 22355666666777654
No 5
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=43.24 E-value=83 Score=28.73 Aligned_cols=86 Identities=26% Similarity=0.397 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCcccCCCCchhhh-------------hhccCCCCCCCCcc-
Q 027982 37 TPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWK-------------EMGWQGKDPSTDFR- 102 (216)
Q Consensus 37 ~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~W~-------------~lGFQ~~dP~tDfR- 102 (216)
...+++.+++.+.+.+.+|+-++++-+.+..-+ ....| ...+.+|+ .|||-.+.|+||--
T Consensus 35 E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i-~~s~p-----h~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK 108 (350)
T KOG4404|consen 35 EARERERLERRLANLKRKYNLSEEDYRELERVI-LKSEP-----HKAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGK 108 (350)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHH-HhcCc-----cccccccccCcceEEEEEEEeeeccCCCCCCCcCce
Confidence 456778888888899999998877666555444 33333 24578886 68999999999964
Q ss_pred ----cchhhhHh-hHHH---HHhhchHHHHHHHH
Q 027982 103 ----GAGFISLE-NLLF---FAKTFSTSFQRLLR 128 (216)
Q Consensus 103 ----g~G~LgL~-~Lly---F~~~~~~~~~~il~ 128 (216)
.-|++|.. .|+. |-|+-......|++
T Consensus 109 ~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~ 142 (350)
T KOG4404|consen 109 AFCMFYALVGIPLTLVMFQSIGERLNTFVAYILR 142 (350)
T ss_pred ehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543 2333 34554444444443
No 6
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=38.78 E-value=54 Score=23.19 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHH
Q 027982 36 LTPQQAERLRRLKHRMKVYFDASRPDHQEALRALW 70 (216)
Q Consensus 36 L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw 70 (216)
|+..|+..|..|++..++ +|.+|...|.++-
T Consensus 26 lsweke~lLt~Lr~~L~I----S~e~H~~~l~~~~ 56 (73)
T PF03735_consen 26 LSWEKEKLLTELRKELNI----SDEEHREELRRAV 56 (73)
T ss_dssp --HHHHHHHHHHHHHTT------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHh
Confidence 899999999999777665 5888988887763
No 7
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=38.15 E-value=12 Score=27.06 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=15.0
Q ss_pred HhhccccCCCCHHHHHHHHHHHHHhCCC
Q 027982 49 HRMKVYFDASRPDHQEALRALWAATYPD 76 (216)
Q Consensus 49 ~~~~~~~d~~~~~H~~~L~~Lw~~~~~~ 76 (216)
..+.-.+||.|+ .+++|++||+.+..+
T Consensus 40 dyLA~~vdP~N~-EerlLkELW~va~e~ 66 (81)
T PF11588_consen 40 DYLAKNVDPKNP-EERLLKELWDVADEE 66 (81)
T ss_dssp HHHHT-----SH-HHHHHHHHHHC--HH
T ss_pred HHHHhcCCCCCH-HHHHHHHHHHhCCHH
Confidence 344568899997 578999999987543
No 8
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=36.99 E-value=14 Score=16.25 Aligned_cols=6 Identities=50% Similarity=1.248 Sum_probs=4.6
Q ss_pred hhccCC
Q 027982 89 EMGWQG 94 (216)
Q Consensus 89 ~lGFQ~ 94 (216)
.+||||
T Consensus 3 smgf~g 8 (10)
T PF08262_consen 3 SMGFHG 8 (10)
T ss_pred cccccc
Confidence 378887
No 9
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=35.95 E-value=45 Score=29.15 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=62.3
Q ss_pred cCCCCchhhhhhccCCCCCCCCcccchhhhHhhHHHHHhhchHHHHHHHHHhC---------------------------
Q 027982 79 LHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG--------------------------- 131 (216)
Q Consensus 79 ~~~~~~~~W~~lGFQ~~dP~tDfRg~G~LgL~~LlyF~~~~~~~~~~il~~~~--------------------------- 131 (216)
+.+..+=+|+..|=+-.|=.+|+-|-|+=-|...+-=.++.|+. ++|+...-
T Consensus 111 lgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~NP~d-rRIimsAwNP~dl~~malpPCH~~~QFyV~~GelS 189 (293)
T KOG0673|consen 111 LGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKNNPDD-RRIIMSAWNPLDLGKMALPPCHTFCQFYVANGELS 189 (293)
T ss_pred cccccceeeeecCccccccccccccccHHHHHHHHHHHhcCCcc-ceeeeeccCccccccccCCccceeeEEEecCCeee
Confidence 35567889999999999999999999999998988888999987 55543321
Q ss_pred ------CCCCCCCCchHHHHHH-HHHHHHHHhhhhcC
Q 027982 132 ------GKRADWEYPFAVAGVN-ITFMLMQMLDLEAT 161 (216)
Q Consensus 132 ------~~~~~~~yPfA~~~In-iT~~L~~~L~~~~~ 161 (216)
|.+-.-+-||-+||-. +|.|+..+.++..+
T Consensus 190 cq~YQrS~dmglGVPFnIASYsLLT~miAhv~gl~pg 226 (293)
T KOG0673|consen 190 CQMYQRSGDMGLGVPFNIASYSLLTCMIAHVCGLKPG 226 (293)
T ss_pred ehhhhhccccccCccchhHHHHHHHHHHHHHhCCCCC
Confidence 1122457899999865 57888888777654
No 10
>PHA02819 hypothetical protein; Provisional
Probab=23.87 E-value=75 Score=22.38 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHhhc
Q 027982 183 DLLYCVAFVVMDKQWLERNATYMEFNVRIHLLF 215 (216)
Q Consensus 183 ~ely~~~f~~f~~~W~~~~at~mdF~~Vl~~v~ 215 (216)
+.||++.|=.| |..+-.||+..+.+|+
T Consensus 2 DKLYaaiFGvF------msS~DdDFnnFI~VVk 28 (71)
T PHA02819 2 DKLYSAIFGVF------MSSSDDDFNNFINVVK 28 (71)
T ss_pred hhHHHHHHHhh------hCCchhHHHHHHHHHH
Confidence 35566665555 3445556666666654
No 11
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=21.36 E-value=38 Score=23.90 Aligned_cols=9 Identities=56% Similarity=0.973 Sum_probs=7.4
Q ss_pred CCCCCCCcc
Q 027982 94 GKDPSTDFR 102 (216)
Q Consensus 94 ~~dP~tDfR 102 (216)
.+||+||+-
T Consensus 58 kED~stDYA 66 (74)
T PF05083_consen 58 KEDPSTDYA 66 (74)
T ss_pred ccCCCcCee
Confidence 789999974
No 12
>PF15579 Imm32: Immunity protein 32
Probab=20.69 E-value=91 Score=23.55 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=19.5
Q ss_pred hccccCCCCHHHHHHHHHHHHHhC
Q 027982 51 MKVYFDASRPDHQEALRALWAATY 74 (216)
Q Consensus 51 ~~~~~d~~~~~H~~~L~~Lw~~~~ 74 (216)
...+||.+|++|.+.=.++-..+.
T Consensus 74 t~e~F~~~NpeHv~~An~IeirL~ 97 (102)
T PF15579_consen 74 TDEPFDVENPEHVALANRIEIRLA 97 (102)
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHh
Confidence 478999999999998887765543
No 13
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.31 E-value=69 Score=24.47 Aligned_cols=25 Identities=20% Similarity=0.600 Sum_probs=22.2
Q ss_pred hhccCCCCCCCCcccchhhhHhhHHHHHhh
Q 027982 89 EMGWQGKDPSTDFRGAGFISLENLLFFAKT 118 (216)
Q Consensus 89 ~lGFQ~~dP~tDfRg~G~LgL~~LlyF~~~ 118 (216)
..||+|+ +|..|=+..+|+.|+.+.
T Consensus 45 r~gy~Ge-----lRA~Gdvl~DQl~~l~R~ 69 (110)
T PF06073_consen 45 RYGYTGE-----LRAVGDVLRDQLFYLRRC 69 (110)
T ss_pred HcCCCCc-----EEEeccchHHHHHHHHHc
Confidence 7999995 999999999999998754
Done!