Query 027982
Match_columns 216
No_of_seqs 140 out of 376
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:37:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 41.1 23 0.00077 25.8 3.2 31 35-69 42-72 (102)
2 3d0w_A YFLH protein; GRAM-posi 35.0 14 0.00048 26.9 1.3 27 49-76 62-88 (104)
3 2fmm_E Protein EMSY; ENT domai 32.1 36 0.0012 25.8 3.2 53 35-91 34-90 (133)
4 3o39_A Periplasmic protein rel 31.1 60 0.002 23.5 4.2 36 34-69 16-51 (108)
5 1g2y_A Hepatocyte nuclear fact 28.3 20 0.00069 20.4 0.9 16 33-48 2-17 (32)
6 2k19_A Putative piscicolin 126 22.1 65 0.0022 23.1 2.9 23 33-55 74-96 (98)
7 2zrr_A Mundticin KS immunity p 18.3 63 0.0021 24.0 2.1 23 33-55 94-116 (118)
8 3itf_A Periplasmic adaptor pro 17.6 1.3E+02 0.0044 22.9 3.9 38 33-70 43-80 (145)
9 2lhu_A Mybpc3 protein; cardiac 14.8 34 0.0012 25.5 -0.0 29 68-104 83-111 (124)
10 3oeo_A Spheroplast protein Y; 13.8 1.4E+02 0.0048 22.2 3.2 38 33-70 31-68 (138)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=41.14 E-value=23 Score=25.75 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 027982 35 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 69 (216)
Q Consensus 35 ~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~L 69 (216)
+|+..|+..|..|+...+ .+|.+|...|.++
T Consensus 42 ~Lsweke~LLt~LR~~L~----IS~eeH~~elrr~ 72 (102)
T 1uz3_A 42 DLTKEKKDLLGELSKVLS----ISTERHRAEVRRA 72 (102)
T ss_dssp SCCHHHHHHHHHHHHHTT----CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHh
Confidence 389999999999976655 5688998887665
No 2
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=34.97 E-value=14 Score=26.93 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=21.0
Q ss_pred HhhccccCCCCHHHHHHHHHHHHHhCCC
Q 027982 49 HRMKVYFDASRPDHQEALRALWAATYPD 76 (216)
Q Consensus 49 ~~~~~~~d~~~~~H~~~L~~Lw~~~~~~ 76 (216)
..+--.+||.|+ .+++|++||+.+..+
T Consensus 62 dyLA~~vdP~N~-EerlLkELW~Va~ee 88 (104)
T 3d0w_A 62 DYLAKHEEPQNG-EEMLLQELWSVADED 88 (104)
T ss_dssp HHHHTCCCCCSH-HHHHHHHHHHHCCHH
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCHH
Confidence 344577899997 578999999987643
No 3
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=32.12 E-value=36 Score=25.80 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCC---cc-cCCCCchhhhhhc
Q 027982 35 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPD---QE-LHGLISDQWKEMG 91 (216)
Q Consensus 35 ~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~---~~-~~~~~~~~W~~lG 91 (216)
.|+..|+..|..|++.++ .+|.+|...|.++-+.-.-. +. ..+..+.+|..-|
T Consensus 34 ~LSweke~LLt~LR~~L~----IS~eeH~~elrr~~sDe~l~~I~~~~~g~~s~~~W~~eg 90 (133)
T 2fmm_E 34 DLTKEKKDLLGELSKVLS----ISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEG 90 (133)
T ss_dssp SCCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHCHHHHHHHHHHHCSCCSHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHhhhHHHHHHHHHhhcCCcchHHHHHcc
Confidence 389999999999976665 56888988877654321000 00 1234678998888
No 4
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=31.10 E-value=60 Score=23.52 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=27.2
Q ss_pred ccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 027982 34 INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 69 (216)
Q Consensus 34 ~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~L 69 (216)
..||..|+..++.|.+..+...+.....-.+.|..|
T Consensus 16 L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~L 51 (108)
T 3o39_A 16 LNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDI 51 (108)
T ss_dssp SCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 789999999999999988877765555444444444
No 5
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=28.33 E-value=20 Score=20.41 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=12.8
Q ss_pred cccCCHHHHHHHHHHH
Q 027982 33 CINLTPQQAERLRRLK 48 (216)
Q Consensus 33 ~~~L~~~Q~~~L~~l~ 48 (216)
..+||++|++.|..|-
T Consensus 2 vskLs~LQ~eLL~aLL 17 (32)
T 1g2y_A 2 VSKLSQLQTEMLAALL 17 (32)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 3678999999998764
No 6
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=22.10 E-value=65 Score=23.14 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=19.3
Q ss_pred cccCCHHHHHHHHHHHHhhcccc
Q 027982 33 CINLTPQQAERLRRLKHRMKVYF 55 (216)
Q Consensus 33 ~~~L~~~Q~~~L~~l~~~~~~~~ 55 (216)
...||+.|+..|..|++..++-|
T Consensus 74 ~i~Ls~~qs~~lK~Lr~Ls~IRY 96 (98)
T 2k19_A 74 GVTLSDYQSKKLKELTSISNIRY 96 (98)
T ss_dssp TCCCCHHHHHHHHHHHHHCSCCT
T ss_pred CcccCHHHHHHHHHHHHHHhhhc
Confidence 36789999999999999888765
No 7
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=18.30 E-value=63 Score=23.98 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=16.9
Q ss_pred cccCCHHHHHHHHHHHHhhcccc
Q 027982 33 CINLTPQQAERLRRLKHRMKVYF 55 (216)
Q Consensus 33 ~~~L~~~Q~~~L~~l~~~~~~~~ 55 (216)
...||+.|.+.|..|++..++-|
T Consensus 94 ~I~LS~~qs~~LK~Lr~LSnIRY 116 (118)
T 2zrr_A 94 GVSLNENQSKKLKELMSISNIRY 116 (118)
T ss_dssp TCCCCHHHHHHHHHHHTTC----
T ss_pred CcccCHHHHHHHHHHHHHHhhhc
Confidence 36799999999999998887755
No 8
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=17.56 E-value=1.3e+02 Score=22.87 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=26.5
Q ss_pred cccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHH
Q 027982 33 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALW 70 (216)
Q Consensus 33 ~~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw 70 (216)
...||..|+..++.|.+..+.....-+.+..+.|..|.
T Consensus 43 ~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li 80 (145)
T 3itf_A 43 GISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLV 80 (145)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence 37899999999999987766555444544555555443
No 9
>2lhu_A Mybpc3 protein; cardiac, structural protein; NMR {Mus musculus}
Probab=14.85 E-value=34 Score=25.54 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=22.9
Q ss_pred HHHHHhCCCcccCCCCchhhhhhccCCCCCCCCcccc
Q 027982 68 ALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGA 104 (216)
Q Consensus 68 ~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDfRg~ 104 (216)
++|+.+... ..++++.|-||- =.|||||+
T Consensus 83 dvWElL~~A------~pkdYEkIAf~Y--GITDlRGM 111 (124)
T 2lhu_A 83 DVWEILRQA------PPSEYERIAFQH--GVTDLRGM 111 (124)
T ss_dssp CHHHHHTTS------CGGGHHHHHHHT--TCCCHHHH
T ss_pred HHHHHHccC------CcchHHHHHHHh--CcHHHHHH
Confidence 789888653 347889999987 68999985
No 10
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=13.78 E-value=1.4e+02 Score=22.24 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=27.3
Q ss_pred cccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHH
Q 027982 33 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALW 70 (216)
Q Consensus 33 ~~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw 70 (216)
.++||+.|+..|+.|.+..+........+-.+.|..|.
T Consensus 31 ~L~LT~eQ~~qir~i~~~~r~~~~~~~~~~r~~l~~Li 68 (138)
T 3oeo_A 31 DLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDII 68 (138)
T ss_dssp CSCCCTTHHHHHHHHHHHHSSSSCCCCTTHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999998887766544444445555553
Done!