Query 027982
Match_columns 216
No_of_seqs 140 out of 376
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 06:37:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027982.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027982hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uz3a1 a.283.1.1 (A:13-102) E 36.2 15 0.0011 24.4 3.2 31 35-69 30-60 (90)
2 d1w36b1 c.37.1.19 (B:1-485) Ex 19.6 14 0.001 29.8 0.8 40 57-98 388-428 (485)
3 d1wpba_ a.233.1.1 (A:) Hypothe 13.4 1E+02 0.0072 22.3 4.2 43 31-74 2-44 (168)
4 d1olma1 a.5.3.1 (A:1-75) Super 11.0 1.1E+02 0.0083 18.3 3.4 20 34-53 6-25 (75)
5 d2c1wa1 d.294.1.1 (A:6-289) En 10.9 2.5E+02 0.018 21.7 6.2 56 57-117 125-180 (284)
6 d1dxea_ c.1.12.5 (A:) 2-dehydr 9.0 73 0.0053 24.3 2.2 54 47-100 177-236 (253)
7 d2ifta1 c.66.1.46 (A:11-193) P 8.4 53 0.0039 23.4 1.0 28 101-129 51-84 (183)
8 d1gvna_ a.8.2.1 (A:) Plasmid m 7.8 2.5E+02 0.018 17.7 4.1 41 34-74 35-75 (88)
9 d1x6va2 c.26.1.5 (A:390-624) A 6.3 38 0.0027 25.9 -0.9 14 85-98 21-35 (235)
10 d1dp7p_ a.4.5.20 (P:) Class II 6.2 2.1E+02 0.015 17.5 3.1 15 201-215 37-51 (76)
No 1
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.22 E-value=15 Score=24.44 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 027982 35 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 69 (216)
Q Consensus 35 ~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~L 69 (216)
+|+..|+..|..|++.. ..+|.+|...|.++
T Consensus 30 ~lsweke~lLt~LR~~L----~IS~eeHr~elrr~ 60 (90)
T d1uz3a1 30 DLTKEKKDLLGELSKVL----SISTERHRAEVRRA 60 (90)
T ss_dssp SCCHHHHHHHHHHHHHT----TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHh
Confidence 48999999999996655 45688898877655
No 2
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.64 E-value=14 Score=29.80 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccCCCCchhhhhh-ccCCCCCC
Q 027982 57 ASRPDHQEALRALWAATYPDQELHGLISDQWKEM-GWQGKDPS 98 (216)
Q Consensus 57 ~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~W~~l-GFQ~~dP~ 98 (216)
..|+.+.++|+.||....+ ..+ -.+|+.|..| ||+|+||.
T Consensus 388 Dts~~Q~~ll~~L~~~~~~-~~l-~~VGD~kQSIY~FRgad~~ 428 (485)
T d1w36b1 388 DTDPQQYRIFRRIWHHQPE-TAL-LLIGDPKQAIYAFRGADIF 428 (485)
T ss_dssp GCCHHHHHHHHHHHTTCTT-CEE-EEEECGGGCCCGGGTCCHH
T ss_pred cCCHHHHHHHHHHHhCCCC-CeE-EEEecCcchhccccCCCHH
Confidence 5688899999999864211 111 1368899977 99999983
No 3
>d1wpba_ a.233.1.1 (A:) Hypothetical protein YfbU {Escherichia coli [TaxId: 562]}
Probab=13.42 E-value=1e+02 Score=22.31 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=33.0
Q ss_pred cccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhC
Q 027982 31 RICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATY 74 (216)
Q Consensus 31 ~~~~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~ 74 (216)
++...||..|+..|.+..+.+. ..||+|.++-+.++++-+..+
T Consensus 2 e~~M~lt~~eRLiL~nq~~il~-~L~pena~~y~r~~~ive~Gy 44 (168)
T d1wpba_ 2 ESTMEMTNAQRLILSNQYKMMT-MLDPANAERYRRLQTIIERGY 44 (168)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHTC
T ss_pred CcccccCHHHHHHHHHHHHHHH-hhCccccccHHHHHHHHHcCc
Confidence 4567899999999988766655 568999888877777766543
No 4
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.03 E-value=1.1e+02 Score=18.27 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=16.9
Q ss_pred ccCCHHHHHHHHHHHHhhcc
Q 027982 34 INLTPQQAERLRRLKHRMKV 53 (216)
Q Consensus 34 ~~L~~~Q~~~L~~l~~~~~~ 53 (216)
-+|++.|+..|..+++....
T Consensus 6 gelt~~q~~~l~elr~~l~~ 25 (75)
T d1olma1 6 GDLSPRQKEALAKFRENVQD 25 (75)
T ss_dssp TBCCHHHHHHHHHHHHHHGG
T ss_pred ccCCHHHHHHHHHHHHHHHh
Confidence 45899999999999988764
No 5
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=10.85 E-value=2.5e+02 Score=21.71 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccCCCCchhhhhhccCCCCCCCCcccchhhhHhhHHHHHh
Q 027982 57 ASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAK 117 (216)
Q Consensus 57 ~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDfRg~G~LgL~~LlyF~~ 117 (216)
.+..+..+.|.+||=..+....-....+.-++.+ |-|+. -||.++.|+.+-++|..
T Consensus 125 ~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHV-FvGE~----k~g~~V~G~HNWi~fy~ 180 (284)
T d2c1wa1 125 PTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGES----KRGQEMMGLHNWVQFYL 180 (284)
T ss_dssp SSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSCS----SSSCSCCCCCCHHHHHH
T ss_pred CCHHHHHHHHHHhcccCcccCCCCCCCCCCcceE-eeccc----cCCCcccceehHHHHHH
Confidence 4557789999999998876432222344555554 55541 25778999999999874
No 6
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=9.03 E-value=73 Score=24.26 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=36.9
Q ss_pred HHHhhccccCCCCHHHHHHHHHHHHHhCCCccc------CCCCchhhhhhccCCCCCCCC
Q 027982 47 LKHRMKVYFDASRPDHQEALRALWAATYPDQEL------HGLISDQWKEMGWQGKDPSTD 100 (216)
Q Consensus 47 l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~------~~~~~~~W~~lGFQ~~dP~tD 100 (216)
|...++.|-+.++|++++.+.++-+.+...... .....++|.+.||+--.-.+|
T Consensus 177 Ls~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~~~~~~~~~~~~G~~~i~~g~D 236 (253)
T d1dxea_ 177 LAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSD 236 (253)
T ss_dssp HHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHHHTTCCEEEEEEH
T ss_pred HHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecCCHHHHHHHHHcCCCEEEehHH
Confidence 334567777899999999999999888643221 112246899999986444444
No 7
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=8.39 E-value=53 Score=23.40 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=21.7
Q ss_pred cccchhhhHhhH------HHHHhhchHHHHHHHHH
Q 027982 101 FRGAGFISLENL------LFFAKTFSTSFQRLLRK 129 (216)
Q Consensus 101 fRg~G~LgL~~L------lyF~~~~~~~~~~il~~ 129 (216)
|-|+|.+|+++| ++|++..+..+. ++.+
T Consensus 51 FaGsG~~glEalSRGA~~v~fVE~~~~a~~-~ik~ 84 (183)
T d2ifta1 51 FAGSGSLGFEALSRQAKKVTFLELDKTVAN-QLKK 84 (183)
T ss_dssp TCTTCHHHHHHHHTTCSEEEEECSCHHHHH-HHHH
T ss_pred ccCccceeeeeeeecceeeEEeecccchhh-hHhh
Confidence 679999999999 568888887653 4444
No 8
>d1gvna_ a.8.2.1 (A:) Plasmid maintenance system epsilon/zeta, antidote epsilon subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=7.80 E-value=2.5e+02 Score=17.66 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=34.4
Q ss_pred ccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhC
Q 027982 34 INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATY 74 (216)
Q Consensus 34 ~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~ 74 (216)
++=+.+|...|+.|...-.+-.+...-+-.+...+.|+.+.
T Consensus 35 ~d~~~l~vnLlnQL~~ak~v~lf~~sleELeaiheYwrsmn 75 (88)
T d1gvna_ 35 NDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRSMN 75 (88)
T ss_dssp TCTTSHHHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 44467888899999988889999888888899999998863
No 9
>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.26 E-value=38 Score=25.89 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=11.3
Q ss_pred hhhhhh-ccCCCCCC
Q 027982 85 DQWKEM-GWQGKDPS 98 (216)
Q Consensus 85 ~~W~~l-GFQ~~dP~ 98 (216)
..|+.+ |||+.||-
T Consensus 21 ~gw~~VvaFqTRNp~ 35 (235)
T d1x6va2 21 MNADAVSAFQLRNPV 35 (235)
T ss_dssp TTCSEEEEEEESSCC
T ss_pred CCCCeEEEeecCCCC
Confidence 468865 99999994
No 10
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.23 E-value=2.1e+02 Score=17.52 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=12.9
Q ss_pred CCCcccHHHHHHhhc
Q 027982 201 NATYMEFNVRIHLLF 215 (216)
Q Consensus 201 ~at~mdF~~Vl~~v~ 215 (216)
--+..+|+++++.||
T Consensus 37 ~l~~a~FgKliR~vF 51 (76)
T d1dp7p_ 37 PVNAASFGKLIRSVF 51 (76)
T ss_dssp CCCHHHHHHHHHHHS
T ss_pred ccCHHHHHHHHHHHC
Confidence 457789999999998
Done!