Query 027983
Match_columns 216
No_of_seqs 130 out of 1046
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:29:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02433 Nodulin-21_like_2 Nodu 100.0 2E-48 4.4E-53 338.5 19.2 176 37-212 11-234 (234)
2 cd02432 Nodulin-21_like_1 Nodu 100.0 6E-48 1.3E-52 332.5 19.4 171 41-211 3-218 (218)
3 cd02434 Nodulin-21_like_3 Nodu 100.0 5.6E-46 1.2E-50 321.5 18.6 168 44-211 1-224 (225)
4 cd02435 CCC1 CCC1. CCC1: This 100.0 2.5E-45 5.5E-50 320.4 18.9 170 41-211 17-241 (241)
5 PF01988 VIT1: VIT family; In 100.0 7.9E-44 1.7E-48 304.8 18.2 166 45-210 1-213 (213)
6 KOG4473 Uncharacterized membra 100.0 1.4E-40 2.9E-45 283.4 13.8 178 35-212 24-247 (247)
7 cd02431 Ferritin_CCC1_C CCC1-r 100.0 6.1E-40 1.3E-44 268.1 16.6 141 46-211 1-149 (149)
8 cd02437 CCC1_like_1 CCC1-relat 100.0 2.8E-37 6.1E-42 257.6 16.9 163 45-211 2-175 (175)
9 TIGR00267 conserved hypothetic 100.0 3.4E-37 7.3E-42 256.4 15.7 161 47-209 1-168 (169)
10 cd02436 Nodulin-21 Nodulin-21. 100.0 2.1E-36 4.5E-41 246.0 14.1 141 44-185 1-151 (152)
11 cd01059 CCC1_like CCC1-related 100.0 2.8E-32 6E-37 220.8 15.1 134 46-211 1-143 (143)
12 COG1814 Uncharacterized membra 99.9 1.2E-23 2.6E-28 182.4 17.5 177 37-213 3-227 (229)
13 COG1814 Uncharacterized membra 95.1 0.22 4.7E-06 43.4 9.9 139 43-211 81-229 (229)
14 TIGR00267 conserved hypothetic 94.5 0.71 1.5E-05 38.5 10.9 42 87-131 36-77 (169)
15 cd02437 CCC1_like_1 CCC1-relat 87.6 3.7 8.1E-05 34.1 8.1 103 101-204 62-172 (175)
16 PF09622 DUF2391: Putative int 65.2 66 0.0014 29.0 9.5 49 44-94 63-113 (267)
17 TIGR02359 thiW thiW protein. L 64.0 84 0.0018 26.1 10.0 72 135-211 46-118 (160)
18 COG2056 Predicted permease [Ge 50.8 1.4E+02 0.0031 28.6 9.4 55 160-215 264-318 (444)
19 PF13829 DUF4191: Domain of un 49.8 70 0.0015 28.2 6.9 18 185-202 51-68 (224)
20 PRK13871 conjugal transfer pro 41.4 1.4E+02 0.0031 24.3 6.9 50 164-215 54-105 (135)
21 PF07155 ECF-ribofla_trS: ECF- 39.7 2E+02 0.0042 23.0 9.7 47 135-181 50-96 (169)
22 PF08006 DUF1700: Protein of u 39.2 2.1E+02 0.0047 23.4 11.3 23 189-211 142-164 (181)
23 PF11712 Vma12: Endoplasmic re 37.4 1.6E+02 0.0035 23.5 6.8 23 159-181 80-102 (142)
24 COG0342 SecD Preprotein transl 36.3 3.7E+02 0.0081 26.3 10.3 36 163-206 450-485 (506)
25 TIGR00892 2A0113 monocarboxyla 34.7 66 0.0014 29.9 4.7 48 76-123 401-448 (455)
26 PF06305 DUF1049: Protein of u 34.6 1.2E+02 0.0026 20.5 5.0 26 92-117 38-63 (68)
27 TIGR02840 spore_YtaF putative 34.1 2.9E+02 0.0064 23.5 12.4 50 44-98 29-78 (206)
28 COG0475 KefB Kef-type K+ trans 34.0 4E+02 0.0086 24.9 10.9 79 88-183 241-325 (397)
29 COG3135 BenE Uncharacterized p 33.9 2.5E+02 0.0054 26.8 8.2 60 134-193 297-364 (402)
30 COG5336 Uncharacterized protei 32.7 2.5E+02 0.0055 22.2 7.2 37 167-204 55-91 (116)
31 PF11744 ALMT: Aluminium activ 32.1 3.2E+02 0.0069 26.1 8.8 97 81-211 67-169 (406)
32 TIGR01594 holin_lambda phage h 32.0 2.4E+02 0.0052 21.8 6.8 32 172-203 31-62 (107)
33 PRK03562 glutathione-regulated 31.7 4E+02 0.0087 26.5 9.9 14 88-101 238-251 (621)
34 PRK12869 ubiA protoheme IX far 29.3 4E+02 0.0086 23.5 13.5 26 73-98 34-59 (279)
35 PF03594 BenE: Benzoate membra 28.9 3.9E+02 0.0084 25.4 8.7 63 133-195 281-351 (378)
36 COG4709 Predicted membrane pro 28.1 4E+02 0.0086 23.1 11.8 32 145-176 89-122 (195)
37 KOG4357 Uncharacterized conser 28.1 40 0.00086 27.5 1.8 22 104-125 5-28 (164)
38 PF05628 Borrelia_P13: Borreli 27.9 78 0.0017 25.8 3.4 72 141-212 18-94 (135)
39 COG2851 CitM H+/citrate sympor 27.1 5.8E+02 0.013 24.6 10.8 31 164-194 287-317 (433)
40 PF10710 DUF2512: Protein of u 26.5 2.2E+02 0.0049 22.9 5.9 18 193-210 33-50 (136)
41 PF05106 Phage_holin_3: Phage 26.1 2.9E+02 0.0064 20.9 7.0 35 173-207 30-64 (100)
42 PF10507 DUF2453: Protein of u 26.1 1E+02 0.0023 24.2 3.8 40 56-102 24-63 (111)
43 PLN02776 prenyltransferase 26.0 5.4E+02 0.012 23.9 14.4 17 194-210 127-143 (341)
44 PRK06012 flhA flagellar biosyn 25.6 3.1E+02 0.0066 28.1 7.9 55 48-102 191-271 (697)
45 PRK03659 glutathione-regulated 25.5 6E+02 0.013 25.1 9.8 13 89-101 236-248 (601)
46 PRK10457 hypothetical protein; 24.5 2.9E+02 0.0063 20.3 6.2 18 160-177 29-46 (82)
47 PF07907 YibE_F: YibE/F-like p 24.2 4.9E+02 0.011 22.9 8.1 29 188-216 78-106 (244)
48 COG4062 MtrB Tetrahydromethano 24.2 70 0.0015 24.9 2.4 51 15-67 48-100 (108)
49 TIGR00843 benE benzoate transp 23.7 5E+02 0.011 24.7 8.5 67 25-94 284-353 (395)
50 TIGR01666 YCCS hypothetical me 23.1 6.9E+02 0.015 25.6 9.9 47 135-181 55-105 (704)
51 PF14362 DUF4407: Domain of un 23.0 5.3E+02 0.011 22.8 9.9 55 157-211 46-101 (301)
52 PRK10132 hypothetical protein; 22.8 92 0.002 24.2 2.9 13 200-212 93-105 (108)
53 PF02532 PsbI: Photosystem II 22.6 87 0.0019 19.9 2.2 23 160-182 7-29 (36)
54 TIGR01667 YCCS_YHJK integral m 22.2 7.7E+02 0.017 25.1 10.0 47 136-182 56-106 (701)
55 PF11505 DUF3216: Protein of u 22.0 51 0.0011 25.2 1.3 27 36-62 32-58 (97)
56 TIGR01398 FlhA flagellar biosy 21.8 3.7E+02 0.0081 27.5 7.6 14 87-100 239-252 (678)
57 PHA00094 VI minor coat protein 21.6 3.1E+02 0.0068 21.6 5.6 40 172-211 20-59 (112)
58 COG3086 RseC Positive regulato 21.5 4.3E+02 0.0094 21.9 6.6 21 133-153 71-91 (150)
59 PF06738 DUF1212: Protein of u 21.1 4.6E+02 0.0099 21.3 8.6 16 134-149 101-116 (193)
60 PF03176 MMPL: MMPL family; I 21.1 5.8E+02 0.013 22.5 10.7 22 133-154 247-269 (333)
61 PF09490 CbtA: Probable cobalt 20.9 5.7E+02 0.012 22.3 11.3 32 77-111 6-37 (227)
62 PRK10404 hypothetical protein; 20.8 1.1E+02 0.0023 23.5 2.9 13 200-212 87-99 (101)
63 PF07297 DPM2: Dolichol phosph 20.2 1.8E+02 0.0039 21.5 3.8 29 153-181 41-69 (78)
No 1
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=2e-48 Score=338.55 Aligned_cols=176 Identities=39% Similarity=0.431 Sum_probs=160.9
Q ss_pred CCchhhhhHHHHHHhhccchHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHh
Q 027983 37 FDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRD 116 (216)
Q Consensus 37 ~~~~~~~~~lR~~V~G~~DGlvt~~alVaG~aga~~~~~~vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~ 116 (216)
++..++.+|+||+|||+||||||+|++|+|++|++.++..|+++|+++++||+||||+|||+|+|+|+|.+++|++||+|
T Consensus 11 ~~~~~~~~~lr~~VlG~nDGlvt~falvaG~aga~~~~~~Vl~~Gla~liAga~SMa~GeYls~kse~d~~~~~~~re~~ 90 (234)
T cd02433 11 RGRHRMSGNLRAAVFGANDGLVSNLALVMGVAGAGVSNQTILLTGLAGLLAGALSMAAGEYVSVTSQRELLEASIPDERR 90 (234)
T ss_pred cchhhhhhHHHHHHHhccchHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 44556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcc----------------------------------------ccccccCCCCHHHHHHHHHHHHHHHHhhcch
Q 027983 117 QGNTGGVTE----------------------------------------EKEEEEGLPSPIQAAAASALAFSLASFIRDY 156 (216)
Q Consensus 117 e~e~~~~~e----------------------------------------~g~~~~~~~sP~~~Al~s~lsf~i~~~i~~~ 156 (216)
+++++|++| +++++++..|||++|++||+||++++++|..
T Consensus 91 ~i~~~p~~e~~el~~iy~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~e~g~~~~~~~~P~~aAl~sflsF~ig~liPLL 170 (234)
T cd02433 91 ELRKHPLEEAAELALIYRAKGLDEEEAKRVASQLMNDPEQALDTLAREELGLDPELLGNPWSAAVSSFLLFALGALIPVL 170 (234)
T ss_pred HhhhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCcchhHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 988776532 2344556689999999999999999999976
Q ss_pred hH--------HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027983 157 KI--------RLGVVVAAVTLALAVFGWLGAVLGKAPVVRSAVRVLVGGWLAMAITFGLTKLIG 212 (216)
Q Consensus 157 ~~--------a~~~s~~~t~~~L~ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~ty~iG~ll~ 212 (216)
|+ ++.+++++++++|+++|++++++++++|||+++||+++|+++++++|++|++++
T Consensus 171 Pf~~~~~~~~~~~~s~~~~~~~L~~lG~~~a~~s~~~~~~~~l~~~~~G~~aa~vsy~iG~l~~ 234 (234)
T cd02433 171 PFLFGMSGLAALVLSVLLVGLALLATGAVTGLLSGRSPGISALRQLAIGGGAAAVTYLLGLLFG 234 (234)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 65 456689999999999999999999999999999999999999999999999985
No 2
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=6e-48 Score=332.50 Aligned_cols=171 Identities=43% Similarity=0.612 Sum_probs=157.8
Q ss_pred hhhhHHHHHHhhccchHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCC
Q 027983 41 KRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNT 120 (216)
Q Consensus 41 ~~~~~lR~~V~G~~DGlvt~~alVaG~aga~~~~~~vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~ 120 (216)
++.+|+||+|||+||||+|+||+|+|++++..|+..|+++|+++++||++|||+|+|+|+|+|+|.++++++||+|++++
T Consensus 3 ~~~~~lr~~V~G~~DGlvs~~alvaG~aga~~~~~~Ill~Gla~l~Aga~SMa~G~yls~~sq~d~~~~~~~~e~~~i~~ 82 (218)
T cd02432 3 ERLNWLRAAVLGANDGIVSVAGLVVGVAAATASSFTILIAGLAGLVAGALSMAAGEYVSVSSQRDTEKADIAKERRELAE 82 (218)
T ss_pred hhHhHHHHHHHhccchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCcc--------------------------------------ccccccCCCCHHHHHHHHHHHHHHHHhhcchhH----
Q 027983 121 GGVTE--------------------------------------EKEEEEGLPSPIQAAAASALAFSLASFIRDYKI---- 158 (216)
Q Consensus 121 ~~~~e--------------------------------------~g~~~~~~~sP~~~Al~s~lsf~i~~~i~~~~~---- 158 (216)
+|++| +++++++..|||++|++||+||++++++|..||
T Consensus 83 ~p~~e~~el~~~~~~~G~~~~~a~~~a~~l~~~~~~~~~~~~e~g~~~~~~~~p~~aal~s~~sf~lg~liPllpy~~~~ 162 (218)
T cd02432 83 DPEAELEELADIYEERGLSPELARQVADELMAKDALEAHARDELGITEGEYANPWQAALASAISFSVGALLPLLAILLAP 162 (218)
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76542 234455667999999999999999999997665
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 027983 159 ---RLGVVVAAVTLALAVFGWLGAVLGKAPVVRSAVRVLVGGWLAMAITFGLTKLI 211 (216)
Q Consensus 159 ---a~~~s~~~t~~~L~ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~ty~iG~ll 211 (216)
.+..++++++++|+++|++|++++++||||+++||+++|++|++++|++|+++
T Consensus 163 ~~~~~~~s~~~~~~aL~~~G~~~a~~~~~~~~~~~l~~~~iG~~aa~vty~iG~l~ 218 (218)
T cd02432 163 AAWKVPVTIIATLLALALTGYVSARLGGASVLRAILRNVIWGALAMALTYLIGRLF 218 (218)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45778999999999999999999999999999999999999999999999875
No 3
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=5.6e-46 Score=321.45 Aligned_cols=168 Identities=25% Similarity=0.343 Sum_probs=153.7
Q ss_pred hHHHHHHhhccchHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCCCCC
Q 027983 44 QWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNTGGV 123 (216)
Q Consensus 44 ~~lR~~V~G~~DGlvt~~alVaG~aga~~~~~~vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~~~~ 123 (216)
+|+|++|||+|||++|++|+|+|++|++.|+.+|+++|+++++||++|||+|||+|+|+|+|.+++|++||+|+++++||
T Consensus 1 ~~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~ili~Gla~liAga~SMa~GeYls~kse~d~~~~e~~re~~~i~~~pe 80 (225)
T cd02434 1 EYLKSIVFGGLDGIVTIFAIVAGVVGAGLSPFVILIIGFANLLADGISMAAGEYVSTKAERDFLHSEKKREEWEIENYPE 80 (225)
T ss_pred CcHHHHhhcchhhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999888775
Q ss_pred cc----------------------------------------ccccccC-CCCHHHHHHHHHHHHHHHHhhcchhHH---
Q 027983 124 TE----------------------------------------EKEEEEG-LPSPIQAAAASALAFSLASFIRDYKIR--- 159 (216)
Q Consensus 124 ~e----------------------------------------~g~~~~~-~~sP~~~Al~s~lsf~i~~~i~~~~~a--- 159 (216)
.| +++++++ ..|||++|++||+||++++++|..|+.
T Consensus 81 ~E~~el~~iy~~kG~~~~~a~~v~~~l~~~~~~~~~~m~~~elg~~~~~~~~~P~~aAl~sflsf~~ggliPLlp~~~~~ 160 (225)
T cd02434 81 GEKSEMVEIYSLKGLSEEVADQVVELLSKYRKLFVDIMMTEELGLIPDDELPSPLKTALVTFLSFLVFGIIPLLPYLLGL 160 (225)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCchhhHHHHHHhhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 42 2333444 479999999999999999999976653
Q ss_pred -----------HHHHHHH-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 027983 160 -----------LGVVVAA-VTLALAVFGWLGAVLGKAPVVRSAVRVLVGGWLAMAITFGLTKLI 211 (216)
Q Consensus 160 -----------~~~s~~~-t~~~L~ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~ty~iG~ll 211 (216)
+..++++ ++++|+++|++|+++++++|+|+++||+++|++|++++|++|+++
T Consensus 161 ~~~~~~~~~~~~~~s~~~~~~~~L~~~G~~~~~~~~~~~~~~~l~~~~~G~~aa~~ty~iG~l~ 224 (225)
T cd02434 161 YYYSQKEIDSVFALSILIFVAFTLFLLGSFKSKLYNGKWIISGIIMLINGAASGGVSFFLGVLF 224 (225)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4557887 999999999999999999999999999999999999999999987
No 4
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=100.00 E-value=2.5e-45 Score=320.38 Aligned_cols=170 Identities=28% Similarity=0.369 Sum_probs=153.2
Q ss_pred hhhhHHHHHHhhccchHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCC
Q 027983 41 KRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNT 120 (216)
Q Consensus 41 ~~~~~lR~~V~G~~DGlvt~~alVaG~aga~~~~~~vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~ 120 (216)
.+.+|+||+|||+||||||+||+|+|+++++ ++.+|+++|+++++|||||||+|||+|+|+|+|.++++++||+|++++
T Consensus 17 ~~~~~lr~~VlG~nDGlvs~~alvaGvag~~-~~~~vll~Gla~liAgA~SMa~GeYlS~~sq~d~~~~~~~~e~~~i~~ 95 (241)
T cd02435 17 TSPRIVRDIIIGLSDGLTVPFALTAGLSSLG-DTKLVITGGLAELAAGAISMGLGGYLAAKSERDHYQREHKRKQEAVEA 95 (241)
T ss_pred cccchHHHHHhhcchhhHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999999999877 489999999999999999999999999999999999999999999876
Q ss_pred CCCcc------------------------------------------ccccccCCCCHHHHHHHHHHHHHHHHhhcchhH
Q 027983 121 GGVTE------------------------------------------EKEEEEGLPSPIQAAAASALAFSLASFIRDYKI 158 (216)
Q Consensus 121 ~~~~e------------------------------------------~g~~~~~~~sP~~~Al~s~lsf~i~~~i~~~~~ 158 (216)
+|++| +++++++..|||++|++||+||++++++|..||
T Consensus 96 ~~~~E~~e~l~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~elg~~~~~~~~p~~aAl~s~lsf~lG~liPLlPy 175 (241)
T cd02435 96 SPSTEQEEIILYDLVQYGLVPLETAASTVTDLRKNPQALVDFLMRFGLGLEEPDTSRALISALTIGLSYFIGGLIPLLPY 175 (241)
T ss_pred CcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhChhHHHHHHHHHhhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66422 223344557999999999999999999997665
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHcCCchh-----HHHHHHHHHHHHHHHHHHHHHHhh
Q 027983 159 --------RLGVVVAAVTLALAVFGWLGAVLGKAPVV-----RSAVRVLVGGWLAMAITFGLTKLI 211 (216)
Q Consensus 159 --------a~~~s~~~t~~~L~ilG~~~a~~s~~~~~-----~s~l~~l~iG~~aa~~ty~iG~ll 211 (216)
++.+++++++++|+++|++++++++++|+ |+++||+++|++|++++|++++++
T Consensus 176 ~~~~~~~~a~~~si~l~~~aL~ilG~~~s~~s~~~~~~~~~~~s~lrml~~G~~aa~vty~l~~~~ 241 (241)
T cd02435 176 FFVSTVGEALLLSVIVTLVALFVFGYVKTWFTGGWGGAGGGVWGAVQMLVVGGLAAGAAWGLVKLL 241 (241)
T ss_pred HHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45679999999999999999999999988 999999999999999999999975
No 5
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=100.00 E-value=7.9e-44 Score=304.77 Aligned_cols=166 Identities=36% Similarity=0.495 Sum_probs=153.0
Q ss_pred HHHHHHhhccchHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCCCCCc
Q 027983 45 WLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNTGGVT 124 (216)
Q Consensus 45 ~lR~~V~G~~DGlvt~~alVaG~aga~~~~~~vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~~~~~ 124 (216)
|+|++|||+|||++|++++|+|+++++.|+.+|+++|+++++||++|||+|+|+|+|+|+|++++|++||+||++++||+
T Consensus 1 ~~r~~V~G~~DGlv~~~~lv~G~a~a~~~~~~vl~~gla~~iAga~SMa~G~yls~~se~~~~~~e~~re~~e~~~~pe~ 80 (213)
T PF01988_consen 1 WLRDAVFGANDGLVTTFGLVAGVAGAGVSSSVVLLAGLAGLIAGAISMAVGEYLSVKSERDLYEAEREREEWELENNPEE 80 (213)
T ss_pred ChHHHHhhccchHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHhChHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred cc---------------------------------------cccccCCCCHHHHHHHHHHHHHHHHhhcchhH-------
Q 027983 125 EE---------------------------------------KEEEEGLPSPIQAAAASALAFSLASFIRDYKI------- 158 (216)
Q Consensus 125 e~---------------------------------------g~~~~~~~sP~~~Al~s~lsf~i~~~i~~~~~------- 158 (216)
|. ++++++..+||++|+++|++|++++++|..||
T Consensus 81 e~~el~~iy~~~Gl~~~~a~~i~~~l~~~~~~~~~m~~ee~g~~~~~~~~p~~~al~~~~sf~lg~liPllp~~~~~~~~ 160 (213)
T PF01988_consen 81 EKEELVEIYRAKGLSEEDAEEIAEELSKDKDALDFMMREELGLSPEEEESPWKAALATFLSFILGGLIPLLPYFFLPSVS 160 (213)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCchHHHHHHhhhccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 31 22334567999999999999999998886554
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 027983 159 -RLGVVVAAVTLALAVFGWLGAVLGKAPVVRSAVRVLVGGWLAMAITFGLTKL 210 (216)
Q Consensus 159 -a~~~s~~~t~~~L~ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~ty~iG~l 210 (216)
++.++++++.++|+++|++|++++++||||+++||+++|+++++++|++|+|
T Consensus 161 ~a~~~s~~~~~~~L~~~G~~~a~~~~~~~~~~~l~~~~~G~~aa~~~~~iG~L 213 (213)
T PF01988_consen 161 EAFIASIAVTILALFILGYFKARISGQSWWRSGLEMLLIGLIAAAVTYLIGYL 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4667899999999999999999999999999999999999999999999986
No 6
>KOG4473 consensus Uncharacterized membrane protein [Function unknown]
Probab=100.00 E-value=1.4e-40 Score=283.40 Aligned_cols=178 Identities=66% Similarity=0.930 Sum_probs=158.9
Q ss_pred ccCCchhhhhHHHHHHhhccchHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHH
Q 027983 35 KDFDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRN 114 (216)
Q Consensus 35 ~~~~~~~~~~~lR~~V~G~~DGlvt~~alVaG~aga~~~~~~vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE 114 (216)
++.|+.++.+|+|+.|+|.||||++++++.+|+.++..|.+.+++.|+|+++|||+|||+|+|+|++||+|++.+|.++|
T Consensus 24 ~~~~~~~~~~wlra~vlGanDGL~s~~sL~~Gv~a~~advki~l~~GfAglvaGA~SMaiGeyvsv~Sq~D~e~ae~q~e 103 (247)
T KOG4473|consen 24 KTFDYFKRAQWLRAAVLGANDGLVSPASLMMGVGAAKADVKIMLLTGFAGLVAGACSMAIGEYVSVKSQYDIEVAEVQME 103 (247)
T ss_pred hhhhhHHHHHHHHHHHhccccCcccHHHHHHhhhhccCCeeEeeehhHHHHHhhhHHHhhccceeecchhhHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HhccCCCCC----------------c----------------------cccccccCCCCHHHHHHHHHHHHHHHHhhcch
Q 027983 115 RDQGNTGGV----------------T----------------------EEKEEEEGLPSPIQAAAASALAFSLASFIRDY 156 (216)
Q Consensus 115 ~~e~e~~~~----------------~----------------------e~g~~~~~~~sP~~~Al~s~lsf~i~~~i~~~ 156 (216)
++|....++ | |+|++.....+|.++|+.++++|.+|+++|+.
T Consensus 104 rre~~a~~~~e~~E~~~Il~g~~~~E~lpvi~alq~~p~~~ldf~~R~elGl~~p~~~~p~qaA~asa~afslGg~vPLl 183 (247)
T KOG4473|consen 104 RREFYANSNLENDEIADILLGEEEKEELPVIKALQRTPELMLDFIIRYELGLDEPAENRPLQAAAASALAFSLGGIVPLL 183 (247)
T ss_pred HHHhhccchhhhHHHHHHhcCCCchhccchhHHhhhChHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHhccHHhhh
Confidence 866432211 1 23445555669999999999999999998887
Q ss_pred hH--------HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027983 157 KI--------RLGVVVAAVTLALAVFGWLGAVLGKAPVVRSAVRVLVGGWLAMAITFGLTKLIG 212 (216)
Q Consensus 157 ~~--------a~~~s~~~t~~~L~ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~ty~iG~ll~ 212 (216)
|+ ..+++++++.++|+.|||.++++++.+..|+++|++++|++|++++|+++++++
T Consensus 184 ~~~fi~~~~~~~v~~vv~~~~aL~~fG~~ga~lg~ak~vrs~~r~vv~G~lAmaatf~l~Klig 247 (247)
T KOG4473|consen 184 PAAFVKDYKVRIVVSVVATTFALFMFGYVGAHLGKAKVVRSSVRVVVGGWLAMAATFGLTKLIG 247 (247)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 75 456789999999999999999999999999999999999999999999999975
No 7
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=100.00 E-value=6.1e-40 Score=268.11 Aligned_cols=141 Identities=24% Similarity=0.314 Sum_probs=133.4
Q ss_pred HHHHHhhccchHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCCCCCcc
Q 027983 46 LRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNTGGVTE 125 (216)
Q Consensus 46 lR~~V~G~~DGlvt~~alVaG~aga~~~~~~vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~~~~~e 125 (216)
+||+|||+|||++|++++++|++++..|+..|+++|+++++||++||++|||+|+|+|+|.+++
T Consensus 1 ~r~~V~G~~DGlvt~~~~v~G~aga~~~~~~i~~~Gl~~~iA~a~SMa~G~YlS~kse~d~~~~---------------- 64 (149)
T cd02431 1 VGDFVLGLNDALVEITGALAGLTGAINNTILVGLSGLIVGIAAALSMAIGAYLSTKSESGVKES---------------- 64 (149)
T ss_pred CchhhccccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHhc----------------
Confidence 5999999999999999999999999999999999999999999999999999999999998643
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHHhhcchhH--------HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 027983 126 EKEEEEGLPSPIQAAAASALAFSLASFIRDYKI--------RLGVVVAAVTLALAVFGWLGAVLGKAPVVRSAVRVLVGG 197 (216)
Q Consensus 126 ~g~~~~~~~sP~~~Al~s~lsf~i~~~i~~~~~--------a~~~s~~~t~~~L~ilG~~~a~~s~~~~~~s~l~~l~iG 197 (216)
||||+|++||++|++++++|..|+ ++..+++++.++|+++|++++++++++|||+++||+++|
T Consensus 65 ---------~p~~~al~s~~sf~~g~~iPllp~~~~~~~~~a~~~s~~~~~~~L~~~G~~~~~~s~~~~~~~~l~~~~~G 135 (149)
T cd02431 65 ---------NPVKSALYTGIAYIIGVVIPILPYLLLSSVYLALALSVTLAVLAILIFNFYISVASGISFRKKFIEMAGLA 135 (149)
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 899999999999999999997664 567799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027983 198 WLAMAITFGLTKLI 211 (216)
Q Consensus 198 ~~aa~~ty~iG~ll 211 (216)
.++++++|++|+++
T Consensus 136 ~~aa~~t~~iG~l~ 149 (149)
T cd02431 136 LGAAFISFLLGYLL 149 (149)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999875
No 8
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=100.00 E-value=2.8e-37 Score=257.60 Aligned_cols=163 Identities=20% Similarity=0.228 Sum_probs=140.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHhhcccC-ChHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCCCCC
Q 027983 45 WLRAAVLGANDGLVSTASLMMGVGAVKQ-DIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNTGGV 123 (216)
Q Consensus 45 ~lR~~V~G~~DGlvt~~alVaG~aga~~-~~~~vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~~~~ 123 (216)
++|++|||+|||++|++++++|++++.. ++.+|+++|+++++|+++||++|||+|+|+| +.|+++|+++.+..++
T Consensus 2 ~~r~~V~G~~DGivs~~~~v~G~~~a~~~~~~~i~~~Gla~~iA~a~Sma~g~yvs~~~~----~~~~~~~~~~~~~~~~ 77 (175)
T cd02437 2 TIRYGIYGLIDGSLSTLGVVFGASLAFDLDPKIIIAAGLGGAFALGISNGLGAAVAEEGS----LRGMLEEKEKILLRLE 77 (175)
T ss_pred chHHHhhccccchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhChhhhHH
Confidence 6899999999999999999999999888 8999999999999999999999999998865 2233333333333333
Q ss_pred ---ccccccccCCCCHHHHHHHHHHHHHHHHhhcchhH-------HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 027983 124 ---TEEKEEEEGLPSPIQAAAASALAFSLASFIRDYKI-------RLGVVVAAVTLALAVFGWLGAVLGKAPVVRSAVRV 193 (216)
Q Consensus 124 ---~e~g~~~~~~~sP~~~Al~s~lsf~i~~~i~~~~~-------a~~~s~~~t~~~L~ilG~~~a~~s~~~~~~s~l~~ 193 (216)
.+..++++...+|++++++++++|++++++|..|+ ++.++++++.++|+++|++|+|+++++|+|+++|+
T Consensus 78 ~~~~~~~~e~~~~~~~~~~al~sgls~~~G~llPLlp~~~~~~~~a~~~si~~~~~~L~~~G~~~~~~~~~~~~~~~~r~ 157 (175)
T cd02437 78 QMLTSTREELAIRKADLPSGLIQGISTTLGGLLPLLPFLPFDLWLAAGIAVAIVLAILFILGLVIGKISKINVAISFVWA 157 (175)
T ss_pred HHHHHHHHHhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 22335556678999999999999999999997665 56678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 027983 194 LVGGWLAMAITFGLTKLI 211 (216)
Q Consensus 194 l~iG~~aa~~ty~iG~ll 211 (216)
+.+|+++++++|.+|+++
T Consensus 158 ~~~g~la~~~t~~vg~l~ 175 (175)
T cd02437 158 VGMVITGISLVFSVGKLF 175 (175)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999999999999999975
No 9
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=100.00 E-value=3.4e-37 Score=256.35 Aligned_cols=161 Identities=20% Similarity=0.263 Sum_probs=133.6
Q ss_pred HHHHhhccchHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCCCCCccc
Q 027983 47 RAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNTGGVTEE 126 (216)
Q Consensus 47 R~~V~G~~DGlvt~~alVaG~aga~~~~~~vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~~~~~e~ 126 (216)
|++|+|+|||++|++++|+|+++. .++.+|+++|+++++|+++||+.|||+++|+|+|.|+.|.++...+ ++...++.
T Consensus 1 R~~VlG~~DGils~~giv~G~~~~-~~~~~i~~~Gla~~vA~a~Sma~GeYv~e~ae~~~e~~ele~~~~~-~~g~~~~~ 78 (169)
T TIGR00267 1 RYVVRGTIDGTLSALGVVGGASGS-VDNYVIILAGLGGGVANGMSNAFGAFTAERAEEEREMRELEKSMLM-DEGKLDDT 78 (169)
T ss_pred CceeeccchHHHHHHHHHHHhhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCchh
Confidence 799999999999999999997655 5777999999999999999999999998887777555444332211 11112222
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHHhhcchhH-------HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 027983 127 KEEEEGLPSPIQAAAASALAFSLASFIRDYKI-------RLGVVVAAVTLALAVFGWLGAVLGKAPVVRSAVRVLVGGWL 199 (216)
Q Consensus 127 g~~~~~~~sP~~~Al~s~lsf~i~~~i~~~~~-------a~~~s~~~t~~~L~ilG~~~a~~s~~~~~~s~l~~l~iG~~ 199 (216)
-++.....+||++|++++++|++++++|..|+ ++.++++++.++|+++|+++++++++||+|+++||+++|.+
T Consensus 79 ~~~~~~~~~p~~aAl~sgls~~~g~liPllp~~~~~~~~a~~~s~~~~~~~L~ilG~~~a~~s~~~~~~s~lr~~~~G~~ 158 (169)
T TIGR00267 79 IIYKQARRRVYMSGFIDGFSTFMGSFVPVLPFLVFDRMTATIVTVLLTLIALLVLGVYLGRISRENILISSLKMVVIGLL 158 (169)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 23344456999999999999999999986665 67789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027983 200 AMAITFGLTK 209 (216)
Q Consensus 200 aa~~ty~iG~ 209 (216)
+++++|++|.
T Consensus 159 aa~it~~iG~ 168 (169)
T TIGR00267 159 VAVVSLLIEG 168 (169)
T ss_pred HHHHHHHHcC
Confidence 9999999874
No 10
>cd02436 Nodulin-21 Nodulin-21. Nodulin-21: This is a family of proteins that may be unique to certain plants. The family member in soybean is found to be nodule-specific and is abundant during nodule development. The proteins of this family thus may play a role in symbiotic nitrogen fixation.
Probab=100.00 E-value=2.1e-36 Score=246.02 Aligned_cols=141 Identities=47% Similarity=0.601 Sum_probs=129.3
Q ss_pred hHHHHHHhhccchHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCCC--
Q 027983 44 QWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNTG-- 121 (216)
Q Consensus 44 ~~lR~~V~G~~DGlvt~~alVaG~aga~~~~~~vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~~-- 121 (216)
+|+|++|||+||||+|++++++|+++++.++.+|+++|+++++||++||+.|||+|+++|+|.|+++++||++|+++.
T Consensus 1 ~~lra~VlGanDGivs~~alv~Gvaga~~~~~~illaGla~lvAga~SMa~GeYvSv~sq~d~e~a~i~~e~~el~rGl~ 80 (152)
T cd02436 1 QWLRAAVLGANDGLVSVASLMLGVGAVCADEHAMLLSGLAGLVAGACPMAIGEFVRVYRQYRRPRAARCLRGRNRARGPA 80 (152)
T ss_pred CcHHHHHhhcchhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHhhcchhhcccccchHHHHHHHHHHHhhcCCC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCccccccccCCCCHHHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 027983 122 GVTEEKEEEEGLPSPIQAAAASALAFSLASFIRDYK--------IRLGVVVAAVTLALAVFGWLGAVLGKAP 185 (216)
Q Consensus 122 ~~~e~g~~~~~~~sP~~~Al~s~lsf~i~~~i~~~~--------~a~~~s~~~t~~~L~ilG~~~a~~s~~~ 185 (216)
|+.|+++++++..|||++|+.|+++|.+++++|... +. ...++.+.++|+++|++.+++++.+
T Consensus 81 ~~lelgi~~~~~~~P~qAA~aSa~sF~~Ga~lPll~~~fl~p~~~~-~~~~~~~~~aL~~~G~~~A~~g~a~ 151 (152)
T cd02436 81 PDSEPEGLRRQAPSPSSAATASALSFAAGALFPLLAAWFVASYASR-RVLPPQSSAPAAPPGRSPATVTASS 151 (152)
T ss_pred hhhhcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-hHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 445788999999999999999999999998777543 34 5678889999999999999999876
No 11
>cd01059 CCC1_like CCC1-related family of proteins. CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.
Probab=100.00 E-value=2.8e-32 Score=220.84 Aligned_cols=134 Identities=54% Similarity=0.686 Sum_probs=126.2
Q ss_pred HHHHHhhccchHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCCCCCcc
Q 027983 46 LRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNTGGVTE 125 (216)
Q Consensus 46 lR~~V~G~~DGlvt~~alVaG~aga~~~~~~vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~~~~~e 125 (216)
+|++|||+|||++|++++++|++++..|++.|+++|+++++|+++||+.|||+|+|+|+|
T Consensus 1 ~r~~v~G~~DGivs~~~~v~G~~~a~~~~~~il~~Gl~~~ia~a~Sma~g~yls~~~e~~-------------------- 60 (143)
T cd01059 1 LRAAVLGANDGLVSTFALVAGVAAAGDSTKAILLAGLAGLVAGAISMAAGEYVSVKSQRD-------------------- 60 (143)
T ss_pred CccceecccchhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------------------
Confidence 589999999999999999999999999999999999999999999999999999999877
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHHhhcchhH--------HHHHHHHH-HHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 027983 126 EKEEEEGLPSPIQAAAASALAFSLASFIRDYKI--------RLGVVVAA-VTLALAVFGWLGAVLGKAPVVRSAVRVLVG 196 (216)
Q Consensus 126 ~g~~~~~~~sP~~~Al~s~lsf~i~~~i~~~~~--------a~~~s~~~-t~~~L~ilG~~~a~~s~~~~~~s~l~~l~i 196 (216)
++|+++++||++++++|..|+ ++..++++ +.+.|+++|++|+|+++++|+|+++||+.+
T Consensus 61 ------------~~al~~~~s~~~g~lipllp~~~~~~~~~a~~~si~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 128 (143)
T cd01059 61 ------------KAALASGLSFILGGLLPLLPYLLLPAGSLALAVSVALVVALALFLLGAFVAKLGGAKKIRAALRMVVL 128 (143)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 799999999999999887665 45667888 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 027983 197 GWLAMAITFGLTKLI 211 (216)
Q Consensus 197 G~~aa~~ty~iG~ll 211 (216)
|.+++.++|.+|+++
T Consensus 129 g~~~a~i~~~~g~l~ 143 (143)
T cd01059 129 GLLAAALTYLLGRLF 143 (143)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999875
No 12
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=182.37 Aligned_cols=177 Identities=35% Similarity=0.476 Sum_probs=149.0
Q ss_pred CCchhhhhHHHHHHhhccchHHHHHHHHHHhhccc-CChHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHH
Q 027983 37 FDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVK-QDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNR 115 (216)
Q Consensus 37 ~~~~~~~~~lR~~V~G~~DGlvt~~alVaG~aga~-~~~~~vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~ 115 (216)
+|..+|.++.|..++|.|||++++..++.++.... .+...++..++++.+.+++||..|+|+|+++|.|.+.++.++|+
T Consensus 3 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~al~mi~ge~~s~~~~~~~~~~~~~~~~ 82 (229)
T COG1814 3 KHYINRINIFRASVLGANDGLVSTAKLLEGVEAASIAAYLKLLIAGFAGLISGALSMIIGEYLSVSSQLDAELAEIQKER 82 (229)
T ss_pred ccHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHHhhhhhhhHHHH
Confidence 56678999999999999999999999999998666 56666677779999999999999999999999999999888655
Q ss_pred hccCCCCCc--------------------------------------cccccccCCCCHHHHH-HHHHHHHHHHHhhcch
Q 027983 116 DQGNTGGVT--------------------------------------EEKEEEEGLPSPIQAA-AASALAFSLASFIRDY 156 (216)
Q Consensus 116 ~e~e~~~~~--------------------------------------e~g~~~~~~~sP~~~A-l~s~lsf~i~~~i~~~ 156 (216)
.+....+.. +..+......+|++++ ++++++|++++++|..
T Consensus 83 ~~~~~~~g~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~sg~s~~~G~l~Pll 162 (229)
T COG1814 83 RLLALSLGVADALVEILGALRGESEEEAREVAEQLLQGLIVGVHGRLSMGIGAYLSSRPLLAATLSSGISFIIGALLPLL 162 (229)
T ss_pred HHHhcCcchhHHHHHHHHHHcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 443322110 0011222235899999 7999999999998876
Q ss_pred hH--------HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027983 157 KI--------RLGVVVAAVTLALAVFGWLGAVLGKAPVVRSAVRVLVGGWLAMAITFGLTKLIGS 213 (216)
Q Consensus 157 ~~--------a~~~s~~~t~~~L~ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~ty~iG~ll~~ 213 (216)
|+ ++++++++++++|+++|++++++++.+++++++||+..|++++.++|++|++++.
T Consensus 163 p~~~~~~~~~al~~si~~~~l~L~ilG~~~a~~s~~~~~~~~lr~v~~gl~aa~lt~~vg~l~~~ 227 (229)
T COG1814 163 PFFFLPDVLSALIASIILALLALAILGAVLARLSGASIAKSILRMVLLGLLAALLTYLVGRLFGI 227 (229)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 63 5578999999999999999999999999999999999999999999999999975
No 13
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=95.13 E-value=0.22 Score=43.38 Aligned_cols=139 Identities=19% Similarity=0.207 Sum_probs=91.0
Q ss_pred hhHHHHHHhhccchHHHHHHHHHHhhcccCChHHHH-HHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCCC
Q 027983 43 SQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMI-LTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNTG 121 (216)
Q Consensus 43 ~~~lR~~V~G~~DGlvt~~alVaG~aga~~~~~~vl-iaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~~ 121 (216)
.++..+..+|.+|+++..++...|......+..... ..+..-...+..+|++++|++.+ +.
T Consensus 81 ~~~~~~~~~g~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~--------------- 142 (229)
T COG1814 81 ERRLLALSLGVADALVEILGALRGESEEEAREVAEQLLQGLIVGVHGRLSMGIGAYLSSR---PL--------------- 142 (229)
T ss_pred HHHHHhcCcchhHHHHHHHHHHcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh---hH---------------
Confidence 456778888888888888888888876665554443 66666667888888888887611 00
Q ss_pred CCccccccccCCCCH-HHHHHHHHHHHHHH----Hhhc---c-hhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Q 027983 122 GVTEEKEEEEGLPSP-IQAAAASALAFSLA----SFIR---D-YKIRLGVVVAAVTLALAVFGWLGAVLGKAPVVRSAVR 192 (216)
Q Consensus 122 ~~~e~g~~~~~~~sP-~~~Al~s~lsf~i~----~~i~---~-~~~a~~~s~~~t~~~L~ilG~~~a~~s~~~~~~s~l~ 192 (216)
.+- +.++++.+++-+++ .++| . ....+.++++...+.-++.|.+...--.....|....
T Consensus 143 ------------~~~~l~sg~s~~~G~l~Pllp~~~~~~~~~al~~si~~~~l~L~ilG~~~a~~s~~~~~~~~lr~v~~ 210 (229)
T COG1814 143 ------------LAATLSSGISFIIGALLPLLPFFFLPDVLSALIASIILALLALAILGAVLARLSGASIAKSILRMVLL 210 (229)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 011 56777777666553 2333 1 3556655555555555555544444335567788888
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027983 193 VLVGGWLAMAITFGLTKLI 211 (216)
Q Consensus 193 ~l~iG~~aa~~ty~iG~ll 211 (216)
-+....++..++.++|..+
T Consensus 211 gl~aa~lt~~vg~l~~~~~ 229 (229)
T COG1814 211 GLLAALLTYLVGRLFGIFL 229 (229)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 8889999999999888653
No 14
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=94.45 E-value=0.71 Score=38.45 Aligned_cols=42 Identities=10% Similarity=0.218 Sum_probs=29.9
Q ss_pred HHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCCCCCcccccccc
Q 027983 87 AGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNTGGVTEEKEEEE 131 (216)
Q Consensus 87 AgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~~~~~e~g~~~~ 131 (216)
++.++.++ ...-.|+-.|++|++||++|+|+++.++.+..++
T Consensus 36 a~~vA~a~---Sma~GeYv~e~ae~~~e~~ele~~~~~~~g~~~~ 77 (169)
T TIGR00267 36 GGGVANGM---SNAFGAFTAERAEEEREMRELEKSMLMDEGKLDD 77 (169)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 44444443 3344588899999999999998888777665554
No 15
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=87.58 E-value=3.7 Score=34.10 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=51.5
Q ss_pred hhhhhHHHHHHHHHHhccCCCCCccccccccCCCCHHHHHHHHHHHHHHH---Hh-hc---chhHHHHHHHHHHHHHHHH
Q 027983 101 YSQLDIQVAQLKRNRDQGNTGGVTEEKEEEEGLPSPIQAAAASALAFSLA---SF-IR---DYKIRLGVVVAAVTLALAV 173 (216)
Q Consensus 101 kse~d~~~ae~~rE~~e~e~~~~~e~g~~~~~~~sP~~~Al~s~lsf~i~---~~-i~---~~~~a~~~s~~~t~~~L~i 173 (216)
+.|+..++.+++.|.+|++....+|++...+...+|+++++..++.-+++ ++ .| ...+.+.+ ..+++..+-.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~al~sgls~~~G~llPLlp~~~~~~~~a~~~si~~-~~~~L~~~G~ 140 (175)
T cd02437 62 LRGMLEEKEKILLRLEQMLTSTREELAIRKADLPSGLIQGISTTLGGLLPLLPFLPFDLWLAAGIAVAI-VLAILFILGL 140 (175)
T ss_pred HHHHHHHHhChhhhHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHH
Confidence 44433344455555555555555666665666778898888777664442 22 22 23444433 3333333333
Q ss_pred HHHHHHHH-cCCchhHHHHHHHHHHHHHHHHH
Q 027983 174 FGWLGAVL-GKAPVVRSAVRVLVGGWLAMAIT 204 (216)
Q Consensus 174 lG~~~a~~-s~~~~~~s~l~~l~iG~~aa~~t 204 (216)
+-...++- -.++.+|...--++.+.++-.++
T Consensus 141 ~~~~~~~~~~~~~~~r~~~~g~la~~~t~~vg 172 (175)
T cd02437 141 VIGKISKINVAISFVWAVGMVITGISLVFSVG 172 (175)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222322 22445555555555555555444
No 16
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=65.16 E-value=66 Score=29.02 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=26.4
Q ss_pred hHHHHHHhhccchHHHHHHHHH--HhhcccCChHHHHHHHHHHHHHHHHHhhh
Q 027983 44 QWLRAAVLGANDGLVSTASLMM--GVGAVKQDIKAMILTGFAGLVAGACSMAI 94 (216)
Q Consensus 44 ~~lR~~V~G~~DGlvt~~alVa--G~aga~~~~~~vliaGlA~liAgaiSMa~ 94 (216)
+.+++.+--.-=|.+....+.. |......++..+ .|--...+--.|||.
T Consensus 63 ~~~~d~v~A~~ig~v~a~~~L~~l~~l~~~~~~~e~--lgkiiv~~vP~siGa 113 (267)
T PF09622_consen 63 DAVRDAVEALAIGAVVAAAVLTLLGKLTLDTPPREA--LGKIIVQSVPASIGA 113 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHH--hHhheeeEecHHHHH
Confidence 3456666655566666665444 333444454443 355555555556665
No 17
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=63.97 E-value=84 Score=26.09 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 027983 135 SPIQAAAASALAFSLASFIRDYK-IRLGVVVAAVTLALAVFGWLGAVLGKAPVVRSAVRVLVGGWLAMAITFGLTKLI 211 (216)
Q Consensus 135 sP~~~Al~s~lsf~i~~~i~~~~-~a~~~s~~~t~~~L~ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~ty~iG~ll 211 (216)
-||..++..+++-++..+++..+ +++..+.. .-++.|+ ..|-++..++....+.+..|++.+.++|-+-.++
T Consensus 46 GP~~g~~~a~i~~ll~~l~~~g~~~afpg~~~----~a~laGl-iyrk~~~~~~a~~ge~igt~iig~~~s~pi~~~~ 118 (160)
T TIGR02359 46 GPWYALAVAFIIGLLRNTLGLGTVLAFPGGMP----GALLAGL-LYRFGRKHYWASLGEILGTGIIGSLLAYPVAAWL 118 (160)
T ss_pred chHHHHHHHHHHHHHHHHhCCCchHHHHHHHH----HHHHHHH-HHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999988877765322 34442222 1223443 3355666778888999999999999888776544
No 18
>COG2056 Predicted permease [General function prediction only]
Probab=50.83 E-value=1.4e+02 Score=28.58 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 027983 160 LGVVVAAVTLALAVFGWLGAVLGKAPVVRSAVRVLVGGWLAMAITFGLTKLIGSSG 215 (216)
Q Consensus 160 ~~~s~~~t~~~L~ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~ty~iG~ll~~~~ 215 (216)
.++.-....+.+++.|.+|=+=++. ....+++|...=...+.++-+.+..++.+|
T Consensus 264 milgal~gliv~~~~gv~~~ke~d~-~~~~G~kmMa~IgFVMl~AaGfa~Vi~~TG 318 (444)
T COG2056 264 MILGALAGLIVFFLSGVIKWKETDD-VFTEGVKMMAFIGFVMLVAAGFAEVINATG 318 (444)
T ss_pred chHHHHHHHHHHHHhcceehhhhHH-HHHhhHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 4444555566666777666554433 445566665555555666666666665544
No 19
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=49.77 E-value=70 Score=28.15 Aligned_cols=18 Identities=17% Similarity=-0.046 Sum_probs=8.0
Q ss_pred chhHHHHHHHHHHHHHHH
Q 027983 185 PVVRSAVRVLVGGWLAMA 202 (216)
Q Consensus 185 ~~~~s~l~~l~iG~~aa~ 202 (216)
+||.-.+--+++|++++.
T Consensus 51 ~~~~~~i~gi~~g~l~am 68 (224)
T PF13829_consen 51 SWWYWLIIGILLGLLAAM 68 (224)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 20
>PRK13871 conjugal transfer protein TrbC; Provisional
Probab=41.39 E-value=1.4e+02 Score=24.28 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHcC-C-chhHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 027983 164 VAAVTLALAVFGWLGAVLGK-A-PVVRSAVRVLVGGWLAMAITFGLTKLIGSSG 215 (216)
Q Consensus 164 ~~~t~~~L~ilG~~~a~~s~-~-~~~~s~l~~l~iG~~aa~~ty~iG~ll~~~~ 215 (216)
..++++++.+.|..... ++ - .+.|..+..++.+.+..++++.+ .+|+.+|
T Consensus 54 ~~IavIaIivaG~~liF-Gg~~~gf~Rrl~~vVlg~~il~gAt~i~-~lFg~~G 105 (135)
T PRK13871 54 GFIALAAVAIAGAMLIF-GGELNDFARRLCYVALVGGVLLGATQIV-ALFGATG 105 (135)
T ss_pred HHHHHHHHHHHHHHHHh-CcchhHHHHHHHHHHHHHHHHHhhHHHH-HHHcccc
Confidence 44455555566633332 32 2 34488888888888888888887 5665554
No 21
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=39.68 E-value=2e+02 Score=23.04 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027983 135 SPIQAAAASALAFSLASFIRDYKIRLGVVVAAVTLALAVFGWLGAVL 181 (216)
Q Consensus 135 sP~~~Al~s~lsf~i~~~i~~~~~a~~~s~~~t~~~L~ilG~~~a~~ 181 (216)
.|+.-+++.+++-.++.++.+++.-...+.+...+.=++.|++.-+.
T Consensus 50 Gp~~G~ivg~ig~~l~dll~g~~~~~~~~~i~~~~~g~i~g~~~~~~ 96 (169)
T PF07155_consen 50 GPKYGAIVGAIGDLLSDLLSGYGPWAPFTMISKGLMGFIAGLIFRKK 96 (169)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHh
Confidence 57777777777777766654443222333444444445556555555
No 22
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=39.21 E-value=2.1e+02 Score=23.36 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 027983 189 SAVRVLVGGWLAMAITFGLTKLI 211 (216)
Q Consensus 189 s~l~~l~iG~~aa~~ty~iG~ll 211 (216)
.++-.+.+|++...+++.+.+++
T Consensus 142 ~~i~~~glGlll~~~~~~l~k~~ 164 (181)
T PF08006_consen 142 FGIGLFGLGLLLIVITFYLTKLF 164 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777766655
No 23
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=37.40 E-value=1.6e+02 Score=23.46 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027983 159 RLGVVVAAVTLALAVFGWLGAVL 181 (216)
Q Consensus 159 a~~~s~~~t~~~L~ilG~~~a~~ 181 (216)
.+++-+++++++.|++||+-+..
T Consensus 80 s~v~Nilvsv~~~~~~~~~~~~~ 102 (142)
T PF11712_consen 80 STVFNILVSVFAVFFAGWYWAGY 102 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888888866653
No 24
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=36.26 E-value=3.7e+02 Score=26.35 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHH
Q 027983 163 VVAAVTLALAVFGWLGAVLGKAPVVRSAVRVLVGGWLAMAITFG 206 (216)
Q Consensus 163 s~~~t~~~L~ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~ty~ 206 (216)
+.+++...|+.+| ..++|+..-++++|.++..++-.
T Consensus 450 TTlia~~~L~~~G--------tG~vKGFA~Tl~lGi~~smfta~ 485 (506)
T COG0342 450 TTLIAAAILFALG--------TGPVKGFAVTLILGILTSMFTAI 485 (506)
T ss_pred HHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHhhhhH
Confidence 4555666666665 55677777777777777665544
No 25
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=34.75 E-value=66 Score=29.86 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCCCCC
Q 027983 76 AMILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNTGGV 123 (216)
Q Consensus 76 ~vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~~~~ 123 (216)
.++....+-.+.+++.+-++.|+-.+-++..+|+..+||..+++++.|
T Consensus 401 ~~f~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (455)
T TIGR00892 401 YIFYASGSIVVSAGLFLAIGNYINYRLLAKEQKAALEREGARDKKDAE 448 (455)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 333333333456677899999998887777777777777666554443
No 26
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.63 E-value=1.2e+02 Score=20.53 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=11.2
Q ss_pred hhhhhhHhhhhhhhHHHHHHHHHHhc
Q 027983 92 MAIGEFVSVYSQLDIQVAQLKRNRDQ 117 (216)
Q Consensus 92 Ma~GeYlS~kse~d~~~ae~~rE~~e 117 (216)
+....+...+-+....+.+.++.++|
T Consensus 38 ~~~~~~~~~r~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 38 LSLPSRLRLRRRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555554444444444433333
No 27
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=34.14 E-value=2.9e+02 Score=23.46 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=28.5
Q ss_pred hHHHHHHhhccchHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHhhhhhhH
Q 027983 44 QWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFV 98 (216)
Q Consensus 44 ~~lR~~V~G~~DGlvt~~alVaG~aga~~~~~~vliaGlA~liAgaiSMa~GeYl 98 (216)
.+....++|..=++.+..|...|-.-.. .+-..++..+++.+-+.+|-|.
T Consensus 29 ~~~~~l~ig~~~~~~~~lg~~~G~~~~~-----~i~~~~~~~ig~~iLi~iG~~m 78 (206)
T TIGR02840 29 PFLSNLIIAVISGLFIFISMLLGKFLAK-----FLPPKVTEILGAFILIAIGIWI 78 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhchhhHHHHHHHHHHHHHHHH
Confidence 3455667777667777777766664321 1212255666666666666553
No 28
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=33.97 E-value=4e+02 Score=24.92 Aligned_cols=79 Identities=20% Similarity=0.144 Sum_probs=43.0
Q ss_pred HHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCCCCCccccccccCCCCHHHHHHHHHHHHHHHHhhcch------hHHHH
Q 027983 88 GACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNTGGVTEEKEEEEGLPSPIQAAAASALAFSLASFIRDY------KIRLG 161 (216)
Q Consensus 88 gaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~~~~~e~g~~~~~~~sP~~~Al~s~lsf~i~~~i~~~------~~a~~ 161 (216)
-++||.+|+|+.--.-.+.+.++ .+.+++-+|.+.++...+.|+-.+.--+. +....
T Consensus 241 ~gls~ilGAFlaGl~ls~~~~~~-----------------~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l 303 (397)
T COG0475 241 LGLSMILGAFLAGLLLSESEYRK-----------------HELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLIL 303 (397)
T ss_pred hChhHHHHHHHHHHHhcccccch-----------------HHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHH
Confidence 47899999999865433322211 01112347888887777777765432221 11112
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC
Q 027983 162 VVVAAVTLALAVFGWLGAVLGK 183 (216)
Q Consensus 162 ~s~~~t~~~L~ilG~~~a~~s~ 183 (216)
..+.+..+.=++..++.+|..|
T Consensus 304 ~~~~~~i~~K~~~~~~~~~~~g 325 (397)
T COG0475 304 LLVALAILGKILGAYLAARLLG 325 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 2333344444455677778777
No 29
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.85 E-value=2.5e+02 Score=26.80 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHHHHHHHHHHHHH----HcCCchhHHHHHH
Q 027983 134 PSPIQAAAASALAFSLASFIRDYK----IRLGVVVAAVTLALAVFGWLGAV----LGKAPVVRSAVRV 193 (216)
Q Consensus 134 ~sP~~~Al~s~lsf~i~~~i~~~~----~a~~~s~~~t~~~L~ilG~~~a~----~s~~~~~~s~l~~ 193 (216)
..-|+++++.++.|++++++.... .++..+++..+..|.++|.+++- +++.++.-.++-+
T Consensus 297 ~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~lAGLALlg~~~~~l~~A~~~~~~R~aAlvt 364 (402)
T COG3135 297 ARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAALAGLALLGTLGNSLQAALKDEREREAALVT 364 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhhh
Confidence 356999999999999987655322 23445566666667777765553 5666665444443
No 30
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.71 E-value=2.5e+02 Score=22.24 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q 027983 167 VTLALAVFGWLGAVLGKAPVVRSAVRVLVGGWLAMAIT 204 (216)
Q Consensus 167 t~~~L~ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~t 204 (216)
.++.=..+||+.=++-+.+||- .+-.+++|.+|....
T Consensus 55 GilVGa~iG~llD~~agTsPwg-lIv~lllGf~AG~ln 91 (116)
T COG5336 55 GILVGAGIGWLLDKFAGTSPWG-LIVFLLLGFGAGVLN 91 (116)
T ss_pred HHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHH
Confidence 3333457888888888888874 555667777765543
No 31
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=32.12 E-value=3.2e+02 Score=26.06 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCCCCCccccccccCCCCHHHHHHHHHHHHHHHH------hhc
Q 027983 81 GFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNTGGVTEEKEEEEGLPSPIQAAAASALAFSLAS------FIR 154 (216)
Q Consensus 81 GlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~~~~~e~g~~~~~~~sP~~~Al~s~lsf~i~~------~i~ 154 (216)
+++.++||++..+. .|++.. ..+|++.-+....-|++++ ++|
T Consensus 67 ~lGTl~aG~La~~~-~~la~~-------------------------------~g~~~~~~~i~~~vFi~~~~atf~r~~P 114 (406)
T PF11744_consen 67 GLGTLLAGILAFGV-SWLASL-------------------------------SGDPGEPIVIGISVFIIGFIATFVRFIP 114 (406)
T ss_pred HHHHHHHHHHHHHH-HHHHHh-------------------------------cCccchhHHHHHHHHHHHHHHHHHHhch
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 027983 155 DYKIRLGVVVAAVTLALAVFGWLGAVLGKAPVVRSAVRVLVGGWLAMAITFGLTKLI 211 (216)
Q Consensus 155 ~~~~a~~~s~~~t~~~L~ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~ty~iG~ll 211 (216)
...-.+-....+..++..++. +.++-+++.+..+..|++.+ ++..+++.++-.++
T Consensus 115 ~~k~rydYg~~Vf~LTf~lV~-vs~yr~~~~~~~A~~R~~~I-~iGv~i~l~vsi~I 169 (406)
T PF11744_consen 115 KIKARYDYGGLVFILTFCLVA-VSGYRTDEFLMLAVWRLLTI-VIGVAICLLVSIFI 169 (406)
T ss_pred hhhhhhhHHHHHHHHHHHhhe-eecCCcchHHHHHHHHHHHH-HHHHHHHHHHHHhe
No 32
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=31.97 E-value=2.4e+02 Score=21.80 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q 027983 172 AVFGWLGAVLGKAPVVRSAVRVLVGGWLAMAI 203 (216)
Q Consensus 172 ~ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~ 203 (216)
++.-++..++.|.+|.|..++-++.|.++-.+
T Consensus 31 ~~mA~LR~~Y~g~~~~~~llea~mCg~la~~~ 62 (107)
T TIGR01594 31 LAIAYLRIRYMGGKFKRKLIDALMCAAIALVA 62 (107)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 34555778889999999999999999887544
No 33
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=31.69 E-value=4e+02 Score=26.50 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=11.3
Q ss_pred HHHHhhhhhhHhhh
Q 027983 88 GACSMAIGEFVSVY 101 (216)
Q Consensus 88 gaiSMa~GeYlS~k 101 (216)
-++||.+|.|+.--
T Consensus 238 ~Gls~~lGAFlAGl 251 (621)
T PRK03562 238 VGLSMALGAFLAGV 251 (621)
T ss_pred hCccHHHHHHHHHH
Confidence 37899999998764
No 34
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=29.32 E-value=4e+02 Score=23.49 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=13.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhhH
Q 027983 73 DIKAMILTGFAGLVAGACSMAIGEFV 98 (216)
Q Consensus 73 ~~~~vliaGlA~liAgaiSMa~GeYl 98 (216)
+....+..-++..++.+-+|.+=+|.
T Consensus 34 ~~~~~~l~~~~~~l~~~a~~~~Nd~~ 59 (279)
T PRK12869 34 SWLPLIPLLIGGTLASGGSAAFNHGI 59 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 34445555555555555555554443
No 35
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=28.95 E-value=3.9e+02 Score=25.41 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcchhHHH----HHHHHHHHHHHHHHH----HHHHHHcCCchhHHHHHHHH
Q 027983 133 LPSPIQAAAASALAFSLASFIRDYKIRL----GVVVAAVTLALAVFG----WLGAVLGKAPVVRSAVRVLV 195 (216)
Q Consensus 133 ~~sP~~~Al~s~lsf~i~~~i~~~~~a~----~~s~~~t~~~L~ilG----~~~a~~s~~~~~~s~l~~l~ 195 (216)
.+..|++|++.++.|++.++....-..+ .-.++..+..|.++| .+.+-+++...+.+++-+++
T Consensus 281 p~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~~sl~~A~~~~~~r~aAlvtFl 351 (378)
T PF03594_consen 281 PSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLGGSLQTAFSDEKYREAALVTFL 351 (378)
T ss_pred cccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 3467999999999999977554322111 112333333344444 45556777776666666553
No 36
>COG4709 Predicted membrane protein [Function unknown]
Probab=28.11 E-value=4e+02 Score=23.06 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=13.2
Q ss_pred HHHHHHHhhcchh--HHHHHHHHHHHHHHHHHHH
Q 027983 145 LAFSLASFIRDYK--IRLGVVVAAVTLALAVFGW 176 (216)
Q Consensus 145 lsf~i~~~i~~~~--~a~~~s~~~t~~~L~ilG~ 176 (216)
.++-+...+|++. ..+++.+.+..+++++-|+
T Consensus 89 ~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~~ 122 (195)
T COG4709 89 GLLAVIIGLPLLIGVILFVIAILVAALTLIFSGW 122 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343344445432 1233344444444444443
No 37
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=28.08 E-value=40 Score=27.48 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=11.6
Q ss_pred hhHHHHHHHH--HHhccCCCCCcc
Q 027983 104 LDIQVAQLKR--NRDQGNTGGVTE 125 (216)
Q Consensus 104 ~d~~~ae~~r--E~~e~e~~~~~e 125 (216)
+|+..|+.+| |+||.+...+.|
T Consensus 5 ~~y~dadl~kl~eeweenddddie 28 (164)
T KOG4357|consen 5 RDYNDADLAKLLEEWEENDDDDIE 28 (164)
T ss_pred hhcchHHHHHHHHHHHhccccccc
Confidence 4455555555 677754444333
No 38
>PF05628 Borrelia_P13: Borrelia membrane protein P13; InterPro: IPR008420 Lyme borreliosis (or Lyme's disease) is one of the most common tick-borne diseases. It is caused by bacteria from the genus Borrelia. This family consists of P13 proteins from Borrelia species. P13 is a 13 kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism [].
Probab=27.93 E-value=78 Score=25.80 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHHHHHHHHHHHc---CCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027983 141 AASALAFSLASFIRDYK--IRLGVVVAAVTLALAVFGWLGAVLG---KAPVVRSAVRVLVGGWLAMAITFGLTKLIG 212 (216)
Q Consensus 141 l~s~lsf~i~~~i~~~~--~a~~~s~~~t~~~L~ilG~~~a~~s---~~~~~~s~l~~l~iG~~aa~~ty~iG~ll~ 212 (216)
+--|+.|-++.|+--.. -......-+....|...|++...-. ..+.+..+...+.+|.++++++|.....+.
T Consensus 18 LNlFlgfGIGSFvqGD~igGg~~lg~~~lg~~L~~tG~~~~~~~~~~~~~~~~~g~~l~~iG~~tm~~srI~slIiP 94 (135)
T PF05628_consen 18 LNLFLGFGIGSFVQGDYIGGGAVLGFDVLGGILILTGYIININANSKDDKMSITGSILMGIGGLTMAASRITSLIIP 94 (135)
T ss_pred HHHHHhcCcchhhccceeCchhhhhHHHHhHHHHHhhheeecccccccccccchhHHHHHHhHHHHHHHHHHHheec
Confidence 44567777777664321 1122223344455677888764422 234467788888999999999999877654
No 39
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=27.07 E-value=5.8e+02 Score=24.63 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Q 027983 164 VAAVTLALAVFGWLGAVLGKAPVVRSAVRVL 194 (216)
Q Consensus 164 ~~~t~~~L~ilG~~~a~~s~~~~~~s~l~~l 194 (216)
........|.-|.+.+.++|..+..+..+-+
T Consensus 287 al~vvs~i~AAGif~Gil~gtgMvdama~si 317 (433)
T COG2851 287 ALMVVSLIFAAGIFLGILSGTGMVDAMAKSI 317 (433)
T ss_pred hhHHHHHHHHHHHHhhhhCCCchHHHHHHHH
Confidence 3444555677899999999999887655543
No 40
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=26.49 E-value=2.2e+02 Score=22.91 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027983 193 VLVGGWLAMAITFGLTKL 210 (216)
Q Consensus 193 ~l~iG~~aa~~ty~iG~l 210 (216)
.+.++++.+.++|.+|++
T Consensus 33 ~l~~sl~ltvvaY~iGDl 50 (136)
T PF10710_consen 33 ILLISLVLTVVAYLIGDL 50 (136)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444455555544
No 41
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=26.10 E-value=2.9e+02 Score=20.90 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH
Q 027983 173 VFGWLGAVLGKAPVVRSAVRVLVGGWLAMAITFGL 207 (216)
Q Consensus 173 ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~ty~i 207 (216)
+..++...+.+.+|.|.-++-++.|+++-.+.-.+
T Consensus 30 ~mA~LR~~Y~g~~~~r~llea~lCg~lal~~~~~L 64 (100)
T PF05106_consen 30 VMALLRGAYGGGSWRRRLLEALLCGLLALFARSLL 64 (100)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667799999999999998888887665544
No 42
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=26.10 E-value=1e+02 Score=24.22 Aligned_cols=40 Identities=18% Similarity=0.393 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHhhhhhhHhhhh
Q 027983 56 GLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYS 102 (216)
Q Consensus 56 Glvt~~alVaG~aga~~~~~~vliaGlA~liAgaiSMa~GeYlS~ks 102 (216)
-|=.++++..|+ ++.--++++|+++|-.-++++.|+..-+
T Consensus 24 ~Id~~lg~~~gi-------StmAAAalGN~vSDv~Gi~~~~~vE~~~ 63 (111)
T PF10507_consen 24 YIDNTLGVTFGI-------STMAAAALGNLVSDVAGIGLGGYVERLA 63 (111)
T ss_pred HHHHHHHHHHhH-------HHHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence 334455555554 4566789999999999999999975443
No 43
>PLN02776 prenyltransferase
Probab=25.96 E-value=5.4e+02 Score=23.93 Aligned_cols=17 Identities=18% Similarity=-0.203 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027983 194 LVGGWLAMAITFGLTKL 210 (216)
Q Consensus 194 l~iG~~aa~~ty~iG~l 210 (216)
..+|.+..++.-++|..
T Consensus 127 ~~lG~~~Ga~ppL~Gw~ 143 (341)
T PLN02776 127 TWVGAVVGAIPPLMGWA 143 (341)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46666666666666654
No 44
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=25.64 E-value=3.1e+02 Score=28.13 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=30.7
Q ss_pred HHHhhccch-------------HHHHHHHHHHhh-cccC---------ChHHHHHHH--HHHHH-HHHHHhhhhhhHhhh
Q 027983 48 AAVLGANDG-------------LVSTASLMMGVG-AVKQ---------DIKAMILTG--FAGLV-AGACSMAIGEFVSVY 101 (216)
Q Consensus 48 ~~V~G~~DG-------------lvt~~alVaG~a-ga~~---------~~~~vliaG--lA~li-AgaiSMa~GeYlS~k 101 (216)
+=-||++|| +++..=++.|+. |..+ +..+++..| +-.-| |--+|++.|=.+.-.
T Consensus 191 s~fyGaMDGAsKFVkGDAIAgiiI~~iNiiGGl~iGv~q~gm~~~eA~~~ytlLTIGDGLVsQIPaLliS~aagiiVTR~ 270 (697)
T PRK06012 191 ADFYGAMDGASKFVKGDAIAGILITVINIIGGLIIGVVQHGMSFGEAAETYTLLTIGDGLVSQIPALLISTAAGIIVTRV 270 (697)
T ss_pred HhhccccCCccccccccHHHHHHHHHHHHHhhhheeehccCCCHHHHHhhhheeeechhHHHHHHHHHHHHHHheEEEec
Confidence 346999998 456666666664 3221 223333332 22222 666788888777643
Q ss_pred h
Q 027983 102 S 102 (216)
Q Consensus 102 s 102 (216)
+
T Consensus 271 ~ 271 (697)
T PRK06012 271 S 271 (697)
T ss_pred C
Confidence 3
No 45
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=25.47 E-value=6e+02 Score=25.11 Aligned_cols=13 Identities=38% Similarity=0.616 Sum_probs=10.5
Q ss_pred HHHhhhhhhHhhh
Q 027983 89 ACSMAIGEFVSVY 101 (216)
Q Consensus 89 aiSMa~GeYlS~k 101 (216)
++||.+|.|+.--
T Consensus 236 Gls~~LGAFlaGl 248 (601)
T PRK03659 236 GLSMALGTFIAGV 248 (601)
T ss_pred CccHHHHHHHHHH
Confidence 5899999998763
No 46
>PRK10457 hypothetical protein; Provisional
Probab=24.47 E-value=2.9e+02 Score=20.31 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027983 160 LGVVVAAVTLALAVFGWL 177 (216)
Q Consensus 160 ~~~s~~~t~~~L~ilG~~ 177 (216)
+..++++..+.-++=|++
T Consensus 29 ~~~tiilGiiGA~iGg~l 46 (82)
T PRK10457 29 FFMTIILGIVGAVVGGWI 46 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 47
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=24.23 E-value=4.9e+02 Score=22.89 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027983 188 RSAVRVLVGGWLAMAITFGLTKLIGSSGL 216 (216)
Q Consensus 188 ~s~l~~l~iG~~aa~~ty~iG~ll~~~~~ 216 (216)
.+.+-+++.=.++..+++.++++.+..|+
T Consensus 78 ~A~~~tl~~~~~~~~l~~~~~~~~~~~G~ 106 (244)
T PF07907_consen 78 AAFIGTLIGVLLAGILALLVMKLAHLQGF 106 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44555555556677788888888887764
No 48
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=24.17 E-value=70 Score=24.93 Aligned_cols=51 Identities=24% Similarity=0.227 Sum_probs=34.7
Q ss_pred CcccchhhccccccccccccccCCchhhhhHHHHHHhhccchHHH--HHHHHHHh
Q 027983 15 NDVEHQTTIATTTLELDETSKDFDYSKRSQWLRAAVLGANDGLVS--TASLMMGV 67 (216)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~V~G~~DGlvt--~~alVaG~ 67 (216)
+|++|..|-.+||+.--. ++.+...-..|++.++||.-=|+.- -+|++.|+
T Consensus 48 ddl~~sldPstp~lnS~P--gRegv~~~aG~~tna~yGfviGl~i~aLlAlil~~ 100 (108)
T COG4062 48 DDLENSLDPSTPPLNSFP--GREGVYATAGYLTNAFYGFVIGLGIMALLALILGV 100 (108)
T ss_pred HHHHhccCCCCCCcccCC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888876544 3444445678999999987766544 45555544
No 49
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=23.66 E-value=5e+02 Score=24.71 Aligned_cols=67 Identities=24% Similarity=0.274 Sum_probs=43.8
Q ss_pred ccccccccccccCCchhhhhHHHHHHhhccchHHHHH-HHHHHhhcccCChHHHHHHHHHHH--HHHHHHhhh
Q 027983 25 TTTLELDETSKDFDYSKRSQWLRAAVLGANDGLVSTA-SLMMGVGAVKQDIKAMILTGFAGL--VAGACSMAI 94 (216)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~lR~~V~G~~DGlvt~~-alVaG~aga~~~~~~vliaGlA~l--iAgaiSMa~ 94 (216)
+|.+-..| +-|++.+.+|.-.++.|..=.++-.| +.+..+..+-....+-.++|+|=+ +.+++..++
T Consensus 284 taAic~G~---~ah~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~~l~~a~ 353 (395)
T TIGR00843 284 TAAICMGK---DAHEDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAGNIKIAL 353 (395)
T ss_pred hHHHhcCc---ccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444 67777788899999999988888888 666666666544444455565533 455555555
No 50
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=23.13 E-value=6.9e+02 Score=25.58 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHHH----hhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027983 135 SPIQAAAASALAFSLAS----FIRDYKIRLGVVVAAVTLALAVFGWLGAVL 181 (216)
Q Consensus 135 sP~~~Al~s~lsf~i~~----~i~~~~~a~~~s~~~t~~~L~ilG~~~a~~ 181 (216)
.-+|+=+++.++|.+.. +..++|+.|...++++.+.+..+|.+.-|.
T Consensus 55 ~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~~mlga~G~Ry 105 (704)
T TIGR01666 55 GRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGFIMLGAVGQRY 105 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34566677777777643 445667777666666666666666655433
No 51
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=23.04 E-value=5.3e+02 Score=22.78 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCch-hHHHHHHHHHHHHHHHHHHHHHHhh
Q 027983 157 KIRLGVVVAAVTLALAVFGWLGAVLGKAPV-VRSAVRVLVGGWLAMAITFGLTKLI 211 (216)
Q Consensus 157 ~~a~~~s~~~t~~~L~ilG~~~a~~s~~~~-~~s~l~~l~iG~~aa~~ty~iG~ll 211 (216)
+.+++++++..++.+.+==++.+-..+..+ ++.....+.=.++|.+++++|+..+
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvliaivIs~pl 101 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVLIAIVISEPL 101 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555455444444455555555444 3333333333556666666665544
No 52
>PRK10132 hypothetical protein; Provisional
Probab=22.78 E-value=92 Score=24.22 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhh
Q 027983 200 AMAITFGLTKLIG 212 (216)
Q Consensus 200 aa~~ty~iG~ll~ 212 (216)
++++++++|.|++
T Consensus 93 aagvG~llG~Ll~ 105 (108)
T PRK10132 93 AAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHHh
Confidence 4556666666654
No 53
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=22.59 E-value=87 Score=19.86 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q 027983 160 LGVVVAAVTLALAVFGWLGAVLG 182 (216)
Q Consensus 160 ~~~s~~~t~~~L~ilG~~~a~~s 182 (216)
++.++++..+.||++|+...--+
T Consensus 7 ~Vy~vV~ffv~LFifGflsnDp~ 29 (36)
T PF02532_consen 7 FVYTVVIFFVSLFIFGFLSNDPG 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTT
T ss_pred eehhhHHHHHHHHhccccCCCCC
Confidence 34567778888999998765443
No 54
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=22.18 E-value=7.7e+02 Score=25.15 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHH----hhcchhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027983 136 PIQAAAASALAFSLAS----FIRDYKIRLGVVVAAVTLALAVFGWLGAVLG 182 (216)
Q Consensus 136 P~~~Al~s~lsf~i~~----~i~~~~~a~~~s~~~t~~~L~ilG~~~a~~s 182 (216)
-+|+=+++.+.|.++. +..+.|+.+...+++..+.+..+|.+.-+.+
T Consensus 56 R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~mlga~G~r~~ 106 (701)
T TIGR01667 56 RLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFILLGALGQRYA 106 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3677788888887754 4456677776666667777777776666654
No 55
>PF11505 DUF3216: Protein of unknown function (DUF3216); InterPro: IPR023108 This domain is found in a family of proteins with unknown function and appears to be restricted to the Thermococcaceae. ; PDB: 2HJM_A.
Probab=22.01 E-value=51 Score=25.23 Aligned_cols=27 Identities=15% Similarity=0.521 Sum_probs=19.1
Q ss_pred cCCchhhhhHHHHHHhhccchHHHHHH
Q 027983 36 DFDYSKRSQWLRAAVLGANDGLVSTAS 62 (216)
Q Consensus 36 ~~~~~~~~~~lR~~V~G~~DGlvt~~a 62 (216)
......-.++++..|||...|++|++-
T Consensus 32 glEskrGe~Fi~vsIlGFlEGiLttLk 58 (97)
T PF11505_consen 32 GLESKRGEEFIKVSILGFLEGILTTLK 58 (97)
T ss_dssp THHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 333333446899999999999998863
No 56
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=21.84 E-value=3.7e+02 Score=27.52 Aligned_cols=14 Identities=36% Similarity=0.173 Sum_probs=9.6
Q ss_pred HHHHHhhhhhhHhh
Q 027983 87 AGACSMAIGEFVSV 100 (216)
Q Consensus 87 AgaiSMa~GeYlS~ 100 (216)
|--+|++.|=.+.-
T Consensus 239 ALliS~AaGiiVTR 252 (678)
T TIGR01398 239 ALIISTATGLIVTR 252 (678)
T ss_pred HHHHHHHHheEEEe
Confidence 56677877776654
No 57
>PHA00094 VI minor coat protein
Probab=21.58 E-value=3.1e+02 Score=21.64 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 027983 172 AVFGWLGAVLGKAPVVRSAVRVLVGGWLAMAITFGLTKLI 211 (216)
Q Consensus 172 ~ilG~~~a~~s~~~~~~s~l~~l~iG~~aa~~ty~iG~ll 211 (216)
.++||+...+++.--+-.-+-.+++|++-+..+...+++.
T Consensus 20 ~~~gyfa~f~tk~iarn~liisl~igLil~~~~~l~~~l~ 59 (112)
T PHA00094 20 NLIGYFAKFFTRGIARNALAISLFIGLILGLNSALVALLS 59 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665555543333333334445555444444444443
No 58
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=21.47 E-value=4.3e+02 Score=21.90 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhh
Q 027983 133 LPSPIQAAAASALAFSLASFI 153 (216)
Q Consensus 133 ~~sP~~~Al~s~lsf~i~~~i 153 (216)
..+++++|+..-+...++.++
T Consensus 71 EkslL~sA~LvYi~PL~~l~v 91 (150)
T COG3086 71 EKSLLKSALLVYIFPLVGLFL 91 (150)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 459999998777666665443
No 59
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=21.15 E-value=4.6e+02 Score=21.35 Aligned_cols=16 Identities=25% Similarity=0.150 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHHHH
Q 027983 134 PSPIQAAAASALAFSL 149 (216)
Q Consensus 134 ~sP~~~Al~s~lsf~i 149 (216)
-+||...+..+++-..
T Consensus 101 y~~~~~~l~~~l~~~~ 116 (193)
T PF06738_consen 101 YPPWLVILAAGLASAA 116 (193)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3667666555544433
No 60
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=21.09 E-value=5.8e+02 Score=22.51 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=14.0
Q ss_pred CCCH-HHHHHHHHHHHHHHHhhc
Q 027983 133 LPSP-IQAAAASALAFSLASFIR 154 (216)
Q Consensus 133 ~~sP-~~~Al~s~lsf~i~~~i~ 154 (216)
...| ..+++.+.++|....+.+
T Consensus 247 ~g~~i~~s~ltt~~gf~~L~~s~ 269 (333)
T PF03176_consen 247 TGRAILLSALTTAIGFGSLLFSP 269 (333)
T ss_pred cCchhHHHHHHHHHHHHHHHHhh
Confidence 3445 567788888887755443
No 61
>PF09490 CbtA: Probable cobalt transporter subunit (CbtA)
Probab=20.91 E-value=5.7e+02 Score=22.34 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHH
Q 027983 77 MILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQL 111 (216)
Q Consensus 77 vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~ 111 (216)
++..-+++++||-+.-++..+ ..|=.+.++|.
T Consensus 6 l~rgllAGllAGlla~~~a~~---~~eP~I~~Ai~ 37 (227)
T PF09490_consen 6 LLRGLLAGLLAGLLAFAFARV---FGEPLIDAAIA 37 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hcCcHHHHHHH
Confidence 344445666666665555333 33333444443
No 62
>PRK10404 hypothetical protein; Provisional
Probab=20.79 E-value=1.1e+02 Score=23.51 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhh
Q 027983 200 AMAITFGLTKLIG 212 (216)
Q Consensus 200 aa~~ty~iG~ll~ 212 (216)
++++++++|.|+.
T Consensus 87 aagvGlllG~Ll~ 99 (101)
T PRK10404 87 GAAVGLVLGLLLA 99 (101)
T ss_pred HHHHHHHHHHHHh
Confidence 4445555555543
No 63
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=20.20 E-value=1.8e+02 Score=21.50 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=22.7
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027983 153 IRDYKIRLGVVVAAVTLALAVFGWLGAVL 181 (216)
Q Consensus 153 i~~~~~a~~~s~~~t~~~L~ilG~~~a~~ 181 (216)
.||..|++.+...+.++.+..+|.+.+.+
T Consensus 41 F~Pr~yAi~lP~~lll~~~~~vg~f~g~v 69 (78)
T PF07297_consen 41 FPPREYAIILPIFLLLLGLSGVGTFLGYV 69 (78)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566888888888888888888888864
Done!