Query 027983
Match_columns 216
No_of_seqs 130 out of 1046
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 06:38:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 76.3 6.1 0.00021 28.0 5.6 41 77-121 21-61 (79)
2 3arc_I Photosystem II reaction 21.6 85 0.0029 19.2 2.9 23 160-182 7-29 (38)
3 3d31_C Sulfate/molybdate ABC t 20.0 3.6E+02 0.012 22.0 8.3 37 175-211 69-105 (295)
4 4dve_A Biotin transporter BIOY 17.9 4E+02 0.014 21.6 8.5 15 38-52 9-23 (198)
5 2hjm_A Hypothetical protein PF 16.2 43 0.0015 24.7 0.8 19 43-61 45-63 (103)
6 1ytz_T Troponin T; muscle, THI 11.1 1.3E+02 0.0046 22.2 2.3 23 91-114 2-24 (107)
7 3aa0_C 21MER peptide from leuc 8.4 91 0.0031 17.2 0.3 13 16-28 1-13 (26)
8 2jpj_A Bacteriocin lactococcin 7.8 3.4E+02 0.012 16.3 2.7 18 196-213 6-23 (39)
9 2onk_C Molybdate/tungstate ABC 6.8 5.7E+02 0.02 20.6 4.8 11 186-196 105-115 (284)
10 3bz1_X Photosystem II PSBX pro 5.4 6E+02 0.021 16.3 3.1 27 159-185 18-44 (50)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=76.25 E-value=6.1 Score=28.04 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhccCCC
Q 027983 77 MILTGFAGLVAGACSMAIGEFVSVYSQLDIQVAQLKRNRDQGNTG 121 (216)
Q Consensus 77 vliaGlA~liAgaiSMa~GeYlS~kse~d~~~ae~~rE~~e~e~~ 121 (216)
|+++|+.-++.-=+. -++.-+-|..-.+.|+++++|+..++
T Consensus 21 illiGllllliwk~~----~~i~DrrE~~kFEkE~~~~~w~~~~N 61 (79)
T 2knc_B 21 ILLIGLAALLIWKLL----ITIHDRKEFAKFEEERARAKWDTANN 61 (79)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccccCCC
Confidence 556666665533322 24455666666666777777765433
No 2
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=21.58 E-value=85 Score=19.22 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q 027983 160 LGVVVAAVTLALAVFGWLGAVLG 182 (216)
Q Consensus 160 ~~~s~~~t~~~L~ilG~~~a~~s 182 (216)
++.++++..+.||++|++..-=+
T Consensus 7 ~Vy~vV~ffvsLFiFGfLsnDP~ 29 (38)
T 3arc_I 7 TVYIVVTFFVLLFVFGFLSGDPA 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGG
T ss_pred eehhHHHHHHHHHHccccCCCCC
Confidence 44577788888999998765443
No 3
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=19.97 E-value=3.6e+02 Score=22.04 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=23.4
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 027983 175 GWLGAVLGKAPVVRSAVRVLVGGWLAMAITFGLTKLI 211 (216)
Q Consensus 175 G~~~a~~s~~~~~~s~l~~l~iG~~aa~~ty~iG~ll 211 (216)
..+...+++..++++...++.+.+++..++..+|..+
T Consensus 69 ~ny~~~~~~~~~~~~l~nTl~~~~~~~~l~~~lg~~~ 105 (295)
T 3d31_C 69 SGLVKAAGNRSVISSIFLSLYAGFLATLLALLLGAPT 105 (295)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666677777777777777666666655544
No 4
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=17.85 E-value=4e+02 Score=21.57 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=9.2
Q ss_pred CchhhhhHHHHHHhh
Q 027983 38 DYSKRSQWLRAAVLG 52 (216)
Q Consensus 38 ~~~~~~~~lR~~V~G 52 (216)
|--++.+.+|+.++-
T Consensus 9 ~am~~~~k~r~l~~~ 23 (198)
T 4dve_A 9 HAMTNNQKVKTLTYS 23 (198)
T ss_dssp -CCCHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHH
Confidence 333456678888764
No 5
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural genomics, secsg, PSI, P structure initiative; 2.90A {Pyrococcus furiosus}
Probab=16.23 E-value=43 Score=24.75 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=15.3
Q ss_pred hhHHHHHHhhccchHHHHH
Q 027983 43 SQWLRAAVLGANDGLVSTA 61 (216)
Q Consensus 43 ~~~lR~~V~G~~DGlvt~~ 61 (216)
-.+++..|||...|++|++
T Consensus 45 e~Fv~vsIlGFlEGiLttL 63 (103)
T 2hjm_A 45 EAFAKASIYGFLEGILTTL 63 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888875
No 6
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=11.09 E-value=1.3e+02 Score=22.25 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=12.6
Q ss_pred HhhhhhhHhhhhhhhHHHHHHHHH
Q 027983 91 SMAIGEFVSVYSQLDIQVAQLKRN 114 (216)
Q Consensus 91 SMa~GeYlS~kse~d~~~ae~~rE 114 (216)
+|.+|.|+ .+.|..--+.+.+||
T Consensus 2 ~~~~g~~~-~k~e~~~~k~q~e~E 24 (107)
T 1ytz_T 2 GASYSSYL-AKADQKRGKKQTARE 24 (107)
T ss_dssp --CCTTHH-HHHHHHHHHHHHHHH
T ss_pred CcchhhHH-HHHHhcccHHHHHHH
Confidence 57889999 455555444444443
No 7
>3aa0_C 21MER peptide from leucine-rich repeat-containing 16A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Mus musculus}
Probab=8.36 E-value=91 Score=17.21 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=8.1
Q ss_pred cccchhhcccccc
Q 027983 16 DVEHQTTIATTTL 28 (216)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (216)
+|||++...|-++
T Consensus 1 ~lehftklrpkr~ 13 (26)
T 3aa0_C 1 RLEHFTKLRPKRN 13 (26)
T ss_pred CcchhhhcCcchh
Confidence 5788885555443
No 8
>2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A
Probab=7.83 E-value=3.4e+02 Score=16.33 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 027983 196 GGWLAMAITFGLTKLIGS 213 (216)
Q Consensus 196 iG~~aa~~ty~iG~ll~~ 213 (216)
+|-...-++|++|+.+|+
T Consensus 6 ig~~vg~aaywv~k~lgn 23 (39)
T 2jpj_A 6 IGQGIGRVAYWVGKALGN 23 (39)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred hhccchHHHHHHHHHhcc
Confidence 444555688999999886
No 9
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=6.76 E-value=5.7e+02 Score=20.64 Aligned_cols=11 Identities=27% Similarity=0.205 Sum_probs=5.5
Q ss_pred hhHHHHHHHHH
Q 027983 186 VVRSAVRVLVG 196 (216)
Q Consensus 186 ~~~s~l~~l~i 196 (216)
+.+..++.++.
T Consensus 105 ~~~~~~~~~~~ 115 (284)
T 2onk_C 105 PGKSVVEGIVD 115 (284)
T ss_dssp SSHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 44555555443
No 10
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=5.44 E-value=6e+02 Score=16.29 Aligned_cols=27 Identities=4% Similarity=-0.100 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 027983 159 RLGVVVAAVTLALAVFGWLGAVLGKAP 185 (216)
Q Consensus 159 a~~~s~~~t~~~L~ilG~~~a~~s~~~ 185 (216)
.|+.|++...+.+.+.+...-.+|...
T Consensus 18 NFl~SlvaG~vVvv~i~~aLi~VSq~D 44 (50)
T 3bz1_X 18 GFFIGLLSGAVVLGLTFAVLIAISQID 44 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccC
Confidence 345555555554444333333344443
Done!