Query 027983
Match_columns 216
No_of_seqs 130 out of 1046
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 06:38:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027983.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027983hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axti1 f.23.37.1 (I:1-35) Pho 24.2 27 0.0019 19.6 2.4 20 160-179 7-26 (35)
2 d1otsa_ f.20.1.1 (A:) Clc chlo 15.1 1.5E+02 0.011 24.2 6.6 23 85-107 410-432 (444)
3 d3b60a2 f.37.1.1 (A:10-328) Mu 14.1 1.6E+02 0.012 21.1 5.9 33 91-123 286-318 (319)
4 d2onkc1 f.58.1.1 (C:1-252) Mol 8.0 2.2E+02 0.016 20.6 4.8 9 187-195 83-91 (252)
5 d3d31c1 f.58.1.1 (C:13-260) Su 6.9 4E+02 0.029 18.9 8.8 23 186-208 45-67 (248)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 6.4 4.3E+02 0.031 18.7 8.6 16 139-154 146-161 (199)
7 d3c2wa3 d.110.3.9 (A:5-117) Ba 5.1 91 0.0066 20.8 0.7 14 26-39 1-14 (113)
8 d1uspa_ d.227.1.1 (A:) Organic 5.1 2.5E+02 0.018 18.4 3.2 24 70-93 40-63 (137)
9 d1pv7a_ f.38.1.2 (A:) Lactose 4.2 6.1E+02 0.044 17.8 7.4 19 197-215 359-377 (417)
10 d1b3qa2 b.40.7.1 (A:540-671) H 4.1 91 0.0066 20.8 0.0 22 5-26 12-33 (132)
No 1
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=24.15 E-value=27 Score=19.56 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027983 160 LGVVVAAVTLALAVFGWLGA 179 (216)
Q Consensus 160 ~~~s~~~t~~~L~ilG~~~a 179 (216)
++.++++-.+.||++|++..
T Consensus 7 ~Vy~vV~fFv~lFiFGFLSn 26 (35)
T d2axti1 7 TVYIVVTFFVLLFVFGFLSG 26 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred ehhhHHHHHHHHHHHhhccC
Confidence 34567777788999997754
No 2
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=15.07 E-value=1.5e+02 Score=24.21 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=17.1
Q ss_pred HHHHHHHhhhhhhHhhhhhhhHH
Q 027983 85 LVAGACSMAIGEFVSVYSQLDIQ 107 (216)
Q Consensus 85 liAgaiSMa~GeYlS~kse~d~~ 107 (216)
++|..+|+.+++++..++=+|..
T Consensus 410 ~ia~~~a~~v~~~~~~~siY~~~ 432 (444)
T d1otsa_ 410 IITGLGATLLAQFTGGKPLYSAI 432 (444)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHH
Confidence 35778888888888877766654
No 3
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=14.14 E-value=1.6e+02 Score=21.10 Aligned_cols=33 Identities=9% Similarity=-0.017 Sum_probs=13.1
Q ss_pred HhhhhhhHhhhhhhhHHHHHHHHHHhccCCCCC
Q 027983 91 SMAIGEFVSVYSQLDIQVAQLKRNRDQGNTGGV 123 (216)
Q Consensus 91 SMa~GeYlS~kse~d~~~ae~~rE~~e~e~~~~ 123 (216)
...+....+.-.+....+.-.+|-.+-+|.+||
T Consensus 286 ~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 286 MRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 333333333333333333333443333454444
No 4
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.02 E-value=2.2e+02 Score=20.59 Aligned_cols=9 Identities=33% Similarity=0.313 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q 027983 187 VRSAVRVLV 195 (216)
Q Consensus 187 ~~s~l~~l~ 195 (216)
.|+.++.+.
T Consensus 83 ~~~~~~~~~ 91 (252)
T d2onkc1 83 GKSVVEGIV 91 (252)
T ss_dssp SHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 344444443
No 5
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=6.93 E-value=4e+02 Score=18.87 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 027983 186 VVRSAVRVLVGGWLAMAITFGLT 208 (216)
Q Consensus 186 ~~~s~l~~l~iG~~aa~~ty~iG 208 (216)
.+++..+++.+..+++.++..+|
T Consensus 45 ~~~~l~~Sl~~a~~s~~i~~~lg 67 (248)
T d3d31c1 45 VISSIFLSLYAGFLATLLALLLG 67 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333333
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.42 E-value=4.3e+02 Score=18.70 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhhc
Q 027983 139 AAAASALAFSLASFIR 154 (216)
Q Consensus 139 ~Al~s~lsf~i~~~i~ 154 (216)
+++.+.++|....+.+
T Consensus 146 s~lTt~~~f~~l~~~~ 161 (199)
T d1iwga7 146 IAMVLSAVFVPMAFFG 161 (199)
T ss_dssp HHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 3445555554444443
No 7
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.12 E-value=91 Score=20.83 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=11.0
Q ss_pred cccccccccccCCc
Q 027983 26 TTLELDETSKDFDY 39 (216)
Q Consensus 26 ~~~~~~~~~~~~~~ 39 (216)
||++++.|.+|+-+
T Consensus 1 tpvdLtnCdrEPIH 14 (113)
T d3c2wa3 1 TPVTLANCEDEPIH 14 (113)
T ss_dssp CCCCTTTGGGCCTT
T ss_pred CCcccccccccccc
Confidence 88999999777543
No 8
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=5.10 E-value=2.5e+02 Score=18.38 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=17.9
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhh
Q 027983 70 VKQDIKAMILTGFAGLVAGACSMA 93 (216)
Q Consensus 70 a~~~~~~vliaGlA~liAgaiSMa 93 (216)
.+.+|...+++++|+.++..+.|.
T Consensus 40 ~g~~P~elllaAlasC~~~t~~~~ 63 (137)
T d1uspa_ 40 PGTNPEQLFAAGYAACFQGALGVV 63 (137)
T ss_dssp SCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999775555543
No 9
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.20 E-value=6.1e+02 Score=17.77 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhhccC
Q 027983 197 GWLAMAITFGLTKLIGSSG 215 (216)
Q Consensus 197 G~~aa~~ty~iG~ll~~~~ 215 (216)
++..+...+..|.+....|
T Consensus 359 ~~g~~i~~~~~G~l~~~~g 377 (417)
T d1pv7a_ 359 QLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 3444555566666655443
No 10
>d1b3qa2 b.40.7.1 (A:540-671) Histidine kinase CheA, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=4.12 E-value=91 Score=20.80 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=15.8
Q ss_pred CCCcccccccCcccchhhcccc
Q 027983 5 FNNAKFTVPVNDVEHQTTIATT 26 (216)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (216)
.++..|++|...+++-....+.
T Consensus 12 ~g~~~faip~~~V~ei~~~~~~ 33 (132)
T d1b3qa2 12 VNNLVYAIPIANIDTILSISKE 33 (132)
T ss_dssp ETTEEEEEEGGGEEEEECCBST
T ss_pred ECCEEEEEEhHHeeEEeccCcc
Confidence 4678999999888876644333
Done!