Query 027984
Match_columns 216
No_of_seqs 118 out of 137
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 04:30:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02893 GRAM: GRAM domain; I 99.4 4.8E-13 1E-17 94.2 3.3 66 87-162 2-67 (69)
2 smart00568 GRAM domain in gluc 99.2 2E-11 4.4E-16 84.1 3.9 58 94-162 2-59 (61)
3 PF14470 bPH_3: Bacterial PH d 96.0 0.057 1.2E-06 39.0 7.8 94 95-204 2-95 (96)
4 KOG4347 GTPase-activating prot 85.8 0.86 1.9E-05 46.4 3.9 97 90-201 14-112 (671)
5 PF14844 PH_BEACH: PH domain a 76.4 4 8.7E-05 30.7 3.8 85 100-186 2-90 (106)
6 PF00169 PH: PH domain; Inter 74.3 6.6 0.00014 26.9 4.1 64 124-188 19-86 (104)
7 KOG3473 RNA polymerase II tran 70.4 2.5 5.4E-05 34.5 1.4 22 165-186 10-31 (112)
8 KOG1032 Uncharacterized conser 68.3 9.9 0.00022 38.2 5.4 106 94-213 117-222 (590)
9 PF06576 DUF1133: Protein of u 66.0 2.9 6.3E-05 36.5 1.1 82 23-132 16-99 (176)
10 PF08498 Sterol_MT_C: Sterol m 65.2 2.2 4.8E-05 31.7 0.1 52 33-91 7-58 (67)
11 smart00683 DM16 Repeats in sea 63.8 11 0.00025 27.1 3.6 39 110-161 15-53 (55)
12 KOG4471 Phosphatidylinositol 3 63.2 7.3 0.00016 40.0 3.4 64 88-164 30-93 (717)
13 PF07719 TPR_2: Tetratricopept 62.8 8.6 0.00019 22.3 2.4 18 191-208 16-33 (34)
14 smart00233 PH Pleckstrin homol 61.7 32 0.00069 22.7 5.3 43 146-189 42-85 (102)
15 PF07289 DUF1448: Protein of u 58.8 8.1 0.00018 36.7 2.7 82 92-189 149-232 (339)
16 PF00515 TPR_1: Tetratricopept 55.0 13 0.00029 21.9 2.3 17 191-207 16-32 (34)
17 PF13181 TPR_8: Tetratricopept 51.0 16 0.00034 21.4 2.2 17 191-207 16-32 (34)
18 smart00028 TPR Tetratricopepti 50.6 20 0.00044 18.2 2.4 16 191-206 16-31 (34)
19 PF13174 TPR_6: Tetratricopept 50.0 18 0.00039 20.6 2.3 19 191-209 15-33 (33)
20 PF11605 Vps36_ESCRT-II: Vacuo 49.9 24 0.00052 27.1 3.6 45 115-170 36-80 (89)
21 PF08567 TFIIH_BTF_p62_N: TFII 46.1 84 0.0018 23.5 5.9 54 115-181 12-67 (79)
22 PF03931 Skp1_POZ: Skp1 family 45.8 14 0.0003 25.9 1.6 14 172-185 1-14 (62)
23 cd00900 PH-like Pleckstrin hom 44.0 87 0.0019 20.6 5.2 65 113-189 18-84 (99)
24 PF13176 TPR_7: Tetratricopept 41.5 24 0.00052 21.8 2.0 14 191-204 14-27 (36)
25 cd00821 PH Pleckstrin homology 40.8 95 0.0021 20.2 5.0 59 119-187 21-79 (96)
26 TIGR02681 phage_pRha phage reg 39.3 35 0.00075 27.0 3.1 30 177-206 69-107 (108)
27 PF10882 bPH_5: Bacterial PH d 39.1 27 0.00058 25.8 2.3 25 143-167 12-36 (100)
28 PF01845 CcdB: CcdB protein; 37.9 53 0.0012 25.9 3.9 34 148-187 31-65 (102)
29 PF12068 DUF3548: Domain of un 36.1 37 0.00081 30.1 3.1 59 143-205 107-165 (213)
30 cd00851 MTH1175 This uncharact 35.5 76 0.0016 22.9 4.2 39 149-191 2-41 (103)
31 PRK13708 plasmid maintenance p 35.1 50 0.0011 26.4 3.3 34 148-187 30-64 (101)
32 PF13374 TPR_10: Tetratricopep 34.2 27 0.00059 20.7 1.4 22 191-212 17-38 (42)
33 PF08238 Sel1: Sel1 repeat; I 33.9 41 0.0009 20.0 2.2 16 191-206 23-38 (39)
34 KOG2415 Electron transfer flav 32.9 14 0.0003 37.2 -0.1 37 56-92 345-383 (621)
35 cd01244 PH_RasGAP_CG9209 RAS_G 32.8 73 0.0016 24.6 3.9 46 131-181 30-76 (98)
36 cd00562 NifX_NifB This CD repr 27.6 90 0.0019 22.4 3.4 39 149-191 1-39 (102)
37 smart00671 SEL1 Sel1-like repe 27.4 69 0.0015 18.6 2.4 17 190-206 19-35 (36)
38 PF14559 TPR_19: Tetratricopep 26.1 66 0.0014 21.1 2.3 18 191-208 6-23 (68)
39 PF14472 DUF4429: Domain of un 25.7 88 0.0019 23.8 3.2 30 150-183 27-59 (94)
40 smart00252 SH2 Src homology 2 25.0 44 0.00095 23.6 1.4 17 185-201 3-19 (84)
41 cd00852 NifB NifB belongs to a 24.7 1.1E+02 0.0025 22.8 3.6 40 149-192 1-40 (106)
42 PF13414 TPR_11: TPR repeat; P 24.6 63 0.0014 21.4 2.0 17 191-207 18-34 (69)
43 KOG3294 WW domain binding prot 24.5 58 0.0012 30.2 2.3 86 113-210 45-142 (261)
44 PF13424 TPR_12: Tetratricopep 24.3 66 0.0014 21.9 2.1 15 191-205 20-34 (78)
45 PF04326 AAA_4: Divergent AAA 24.2 55 0.0012 24.3 1.8 31 88-122 7-40 (122)
46 PF13428 TPR_14: Tetratricopep 23.7 86 0.0019 19.8 2.4 19 191-209 16-34 (44)
47 PF08909 DUF1854: Domain of un 22.9 56 0.0012 27.3 1.8 35 170-204 17-53 (133)
48 cd01239 PH_PKD Protein kinase 22.3 1.4E+02 0.003 24.7 3.9 41 145-188 37-80 (117)
49 PF10756 bPH_6: Bacterial PH d 22.2 75 0.0016 22.6 2.1 36 149-189 19-54 (73)
50 smart00512 Skp1 Found in Skp1 21.4 70 0.0015 24.1 1.9 21 172-196 2-22 (104)
51 PF08512 Rtt106: Histone chape 21.3 3.7E+02 0.008 20.3 6.1 60 113-188 9-72 (95)
52 PF03517 Voldacs: Regulator of 20.9 74 0.0016 25.6 2.1 15 117-131 1-15 (135)
53 cd08544 Reeler Reeler, the N-t 20.3 1.3E+02 0.0028 23.5 3.3 34 146-190 19-52 (135)
No 1
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.35 E-value=4.8e-13 Score=94.18 Aligned_cols=66 Identities=29% Similarity=0.506 Sum_probs=45.7
Q ss_pred eeeecccCCccchhhhhhcceeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccC
Q 027984 87 VFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNP 162 (216)
Q Consensus 87 iFkQ~F~~~~~EkLlKa~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnp 162 (216)
-|++.|...++|+|...+.|+|..+.+|+.|.||||+.+++|+|+.+-.-. ++++|||..|..|..
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k 67 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEK 67 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEE
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEE
Confidence 589999999999999999999999999999999999999999998665422 799999999998853
No 2
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.18 E-value=2e-11 Score=84.07 Aligned_cols=58 Identities=41% Similarity=0.690 Sum_probs=50.5
Q ss_pred CCccchhhhhhcceeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccC
Q 027984 94 KLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNP 162 (216)
Q Consensus 94 ~~~~EkLlKa~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnp 162 (216)
..++|+|...|.|+|+ +.+|+.|.||||+.+++|+|+.+-... .+++|||+.|.+|+.
T Consensus 2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~----------~~~~ipl~~I~~i~k 59 (61)
T smart00568 2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT----------PKVVIPLADITRIEK 59 (61)
T ss_pred cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee----------EEEEEEHHHeeEEEE
Confidence 4689999999999999 679999999999999999997665422 199999999999864
No 3
>PF14470 bPH_3: Bacterial PH domain
Probab=95.96 E-value=0.057 Score=39.02 Aligned_cols=94 Identities=16% Similarity=0.136 Sum_probs=66.7
Q ss_pred CccchhhhhhcceeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCCCceE
Q 027984 95 LAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI 174 (216)
Q Consensus 95 ~~~EkLlKa~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~eKYI 174 (216)
.+||+.+-...|.+-...+.-.|+|+++++||-||+-.++. + .....||+++|.+|+-.... -...|
T Consensus 2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~-----~-----~~~~~i~y~~I~~v~~~~g~---~~~~i 68 (96)
T PF14470_consen 2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG-----G-----KKFESIPYDDITSVSFKKGI---LGGKI 68 (96)
T ss_pred cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC-----C-----ceEEEEEhhheEEEEEEccc---cccEE
Confidence 57899999999988877788999999999999999874332 1 23489999999999776443 34679
Q ss_pred EEEEecCceeeeeecccHHHHHHHHHHHHh
Q 027984 175 HVVTRDGYEFWFMGFISYDKALKTLTEALR 204 (216)
Q Consensus 175 qIvTvD~~eFWFMGFvnY~KA~k~Lq~Al~ 204 (216)
.|.| ++..+= ++.+. .+-++-+-+.|+
T Consensus 69 ~i~~-~~~~~~-i~~i~-k~~~~~~~~~i~ 95 (96)
T PF14470_consen 69 TIET-NGEKIK-IDNIQ-KGDVKEFYEYIK 95 (96)
T ss_pred EEEE-CCEEEE-EEEcC-HHHHHHHHHHHh
Confidence 9888 544443 35443 333344444443
No 4
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=85.81 E-value=0.86 Score=46.43 Aligned_cols=97 Identities=24% Similarity=0.224 Sum_probs=75.6
Q ss_pred ecccCCccchhhhhhcceeecCCCc--ceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCC
Q 027984 90 QEFHKLAGEKLLKAYACYISTSNGP--VIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRW 167 (216)
Q Consensus 90 Q~F~~~~~EkLlKa~~CYLSTsaGP--VaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~ 167 (216)
-.|... |+|.-.-.|=|-|..-| ..|-||+||..++|.||-+=. -.+++||.-|+.|.-.. ..
T Consensus 14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~------------c~~~~Pl~~vr~ve~~~-~s 78 (671)
T KOG4347|consen 14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWL------------CSFITPLLAVRSVERLD-DS 78 (671)
T ss_pred ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCccc------------ceEeeehhhhhhhhccC-cc
Confidence 456655 99999999999997774 899999999999999997654 25899999999996554 22
Q ss_pred CCCCceEEEEEecCceeeeeecccHHHHHHHHHH
Q 027984 168 NPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTE 201 (216)
Q Consensus 168 ~P~eKYIqIvTvD~~eFWFMGFvnY~KA~k~Lq~ 201 (216)
+--+.=|-+.|..+-.|-|-|...=++.+.-++.
T Consensus 79 s~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~~ 112 (671)
T KOG4347|consen 79 SLFTQLISLFTSNMVGMRFGGLTERLKLLSKLHL 112 (671)
T ss_pred ccchhhhHHhhcCcceEEecchhhHHHHHHHHhc
Confidence 2222336678889999999999887777765553
No 5
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=76.44 E-value=4 Score=30.70 Aligned_cols=85 Identities=19% Similarity=0.233 Sum_probs=52.6
Q ss_pred hhhhhcceeecCCCcceeeEEeecceeEEeeCCCceeeC-CCC---CeeeEEEEEeeeccccccccCCCCCCCCCCceEE
Q 027984 100 LLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYS-SSG---QQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIH 175 (216)
Q Consensus 100 LlKa~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~s-p~g---~~~~~yYKVvIPL~kik~vnps~n~~~P~eKYIq 175 (216)
.+-++.|-+=|..+-+.|+|.|++..+.|..|..-.... ... ......--..+|+.+|+.|-..--.-+ +-=||
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr--~~AlE 79 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLR--DTALE 79 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTE--EEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCc--ceEEE
Confidence 445688999999999999999999999999981111000 000 011112235689999999955433332 33489
Q ss_pred EEEecCceeee
Q 027984 176 VVTRDGYEFWF 186 (216)
Q Consensus 176 IvTvD~~eFWF 186 (216)
|.+.||..+-|
T Consensus 80 iF~~dg~s~f~ 90 (106)
T PF14844_consen 80 IFFSDGRSYFF 90 (106)
T ss_dssp EEETTS-EEEE
T ss_pred EEEcCCcEEEE
Confidence 99999988743
No 6
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=74.33 E-value=6.6 Score=26.94 Aligned_cols=64 Identities=23% Similarity=0.258 Sum_probs=44.9
Q ss_pred ceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCC----CCCCCceEEEEEecCceeeeee
Q 027984 124 QRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANR----WNPSEKYIHVVTRDGYEFWFMG 188 (216)
Q Consensus 124 ~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~----~~P~eKYIqIvTvD~~eFWFMG 188 (216)
+|.++-.+.-|.++..+.+.....++-+|||..+ .|.+..+. ..+.+..++|.+.++-.|+|..
T Consensus 19 ~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 86 (104)
T PF00169_consen 19 KRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSA 86 (104)
T ss_dssp EEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEE
T ss_pred EEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEc
Confidence 4445555555655555554445567789999999 77776666 3678888999998887888764
No 7
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=70.45 E-value=2.5 Score=34.52 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.0
Q ss_pred CCCCCCCceEEEEEecCceeee
Q 027984 165 NRWNPSEKYIHVVTRDGYEFWF 186 (216)
Q Consensus 165 n~~~P~eKYIqIvTvD~~eFWF 186 (216)
--+-|+++|+.+|+-|||||-.
T Consensus 10 g~egp~~~yVkLvS~Ddhefii 31 (112)
T KOG3473|consen 10 GCEGPDSMYVKLVSSDDHEFII 31 (112)
T ss_pred CccCcchhheEeecCCCcEEEE
Confidence 3467999999999999999964
No 8
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=68.26 E-value=9.9 Score=38.17 Aligned_cols=106 Identities=25% Similarity=0.415 Sum_probs=74.3
Q ss_pred CCccchhhhhhcceeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCCCce
Q 027984 94 KLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKY 173 (216)
Q Consensus 94 ~~~~EkLlKa~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~eKY 173 (216)
+.+.|+|+..+.|+|.-.-. .=|=+|||...|+|-|.-= -| --|||||++.|..+.......- ..-=
T Consensus 117 ~~~~~~l~~~~~cal~reil-lQGrmyis~~~icF~s~i~----------gw-~~~~vIpf~eI~~ikk~~tag~-fpn~ 183 (590)
T KOG1032|consen 117 VPDPEILLTDYSCALQREIL-LQGRMYISEEHICFNSNIF----------GW-ETKVVIPFDEITLIKKTKTAGI-FPNA 183 (590)
T ss_pred CCCcceeeeecchhhccccc-cccccccccceeeeccccc----------Cc-cceeEEeeeeeeeeehhhhccC-CCcc
Confidence 67889999999999987765 4688999999999877521 11 1379999988877754442221 1122
Q ss_pred EEEEEecCceeeeeecccHHHHHHHHHHHHhcCCCCCCCc
Q 027984 174 IHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGL 213 (216)
Q Consensus 174 IqIvTvD~~eFWFMGFvnY~KA~k~Lq~Al~~~~~~s~~~ 213 (216)
|+|-|+.. -+=|.+|+.=|-+++....-+....+++|.+
T Consensus 184 i~i~t~~~-ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~ 222 (590)
T KOG1032|consen 184 IEITTGTT-KYIFVSLLSRDATYKLIKLLLHKFLDSSGSP 222 (590)
T ss_pred eEEecCCC-cceeeecccCccHHHHHHHhhhhcccccCCc
Confidence 55554444 4457899999999997766666677777653
No 9
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=66.04 E-value=2.9 Score=36.54 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=54.6
Q ss_pred CCchhHH--HHHHhhccccccchhhhhhhhhhhhhhhhccCcChhHHHHHHhhhceeeeecCCcceeeeecccCCccchh
Q 027984 23 NRSWGEI--CEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKL 100 (216)
Q Consensus 23 ~~~~~~v--~~~~n~~gk~~~~atrkae~~a~~i~~hlk~gp~~sdta~gklslGakil~~GG~ekiFkQ~F~~~~~EkL 100 (216)
-++.|+| ...|+.||+-- --.-.-++|++..|-.+++++.||. .+--+=|.+-|.+ ++.|
T Consensus 16 L~tle~vWiqgkLrmWGRws----yiggG~~g~mfnqLl~s~kitKtaI---~~aLr~mkKsGi~-----------k~EL 77 (176)
T PF06576_consen 16 LRTLESVWIQGKLRMWGRWS----YIGGGKGGNMFNQLLASKKITKTAI---NEALRRMKKSGIS-----------KPEL 77 (176)
T ss_pred ehHHHHHHHHHHHHhhheee----cccCCchhhHHHHHHhcccccHHHH---HHHHHHHHHhcCC-----------cHHH
Confidence 3567775 88999999331 1123456899999999999998764 3333334444544 5778
Q ss_pred hhhhcceeecCCCcceeeEEeecceeEEeeCC
Q 027984 101 LKAYACYISTSNGPVIGTLYISTQRMAFCSDY 132 (216)
Q Consensus 101 lKa~~CYLSTsaGPVaG~LfiSt~kvAFcSdr 132 (216)
..-+.|+|.--+= |+ +|||+|-
T Consensus 78 ~~~~~eil~gK~k--------S~--La~ctD~ 99 (176)
T PF06576_consen 78 EAFLREILNGKQK--------SW--LAFCTDD 99 (176)
T ss_pred HHHHHHHhCcccc--------cc--cceecch
Confidence 8888898875321 22 8999983
No 10
>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process
Probab=65.15 E-value=2.2 Score=31.75 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=43.1
Q ss_pred HhhccccccchhhhhhhhhhhhhhhhccCcChhHHHHHHhhhceeeeecCCcceeeeec
Q 027984 33 LNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQE 91 (216)
Q Consensus 33 ~n~~gk~~~~atrkae~~a~~i~~hlk~gp~~sdta~gklslGakil~~GG~ekiFkQ~ 91 (216)
+++|| |..-...=.+-|-+++.|+=+-.+.--|..+|.-|.+||-++||--.
T Consensus 7 ~t~~G-------r~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPM 58 (67)
T PF08498_consen 7 MTWLG-------RFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPM 58 (67)
T ss_pred ccHHH-------HHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCch
Confidence 55667 55555666777899999999999999999999999999999999643
No 11
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=63.84 E-value=11 Score=27.12 Aligned_cols=39 Identities=26% Similarity=0.494 Sum_probs=30.6
Q ss_pred cCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeecccccccc
Q 027984 110 TSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVN 161 (216)
Q Consensus 110 TsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vn 161 (216)
...| --|+|++++-|+-..|+.--. +.|.||.-+|..++
T Consensus 15 gn~G-~~G~l~VTNlRiiW~s~~~~~------------~NlSIgy~~i~~i~ 53 (55)
T smart00683 15 GNNG-DLGVFFVTNLRLVWHSDTNPR------------FNISVGYLQITNVR 53 (55)
T ss_pred CCCC-CeeEEEEEeeEEEEEeCCCCc------------eEEEEcceeEEEEE
Confidence 3455 459999999999999987544 57899988887764
No 12
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.25 E-value=7.3 Score=40.03 Aligned_cols=64 Identities=31% Similarity=0.358 Sum_probs=48.1
Q ss_pred eeecccCCccchhhhhhcceeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCC
Q 027984 88 FQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 164 (216)
Q Consensus 88 FkQ~F~~~~~EkLlKa~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~ 164 (216)
..--|...|||.+..-- |..-=.||+.|+|.||+-|+=|-|.-. +.+|-+-|||.-|.+|+--.
T Consensus 30 ~~~~~~~L~GE~i~~~~--y~c~f~G~~~g~l~lsNyRl~fks~~t-----------~~~~~~~VPLg~Ie~vek~~ 93 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEK--YICPFLGAVDGTLALSNYRLYFKSKET-----------DPPFVLDVPLGVIERVEKRG 93 (717)
T ss_pred ccCcccccCCcccccce--ecccccccccceEEeeeeEEEEEeccC-----------CCceeEeechhhhhhhhhcC
Confidence 35567888999884322 555667899999999999999987532 22677889999998886544
No 13
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=62.79 E-value=8.6 Score=22.26 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHHHhcCCC
Q 027984 191 SYDKALKTLTEALRRFPD 208 (216)
Q Consensus 191 nY~KA~k~Lq~Al~~~~~ 208 (216)
+|++|.+++++|++...+
T Consensus 16 ~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 16 NYEEAIEYFEKALELDPN 33 (34)
T ss_dssp -HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 689999999999986543
No 14
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=61.67 E-value=32 Score=22.72 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=29.1
Q ss_pred EEEEEeeeccccccccCCCCCC-CCCCceEEEEEecCceeeeeec
Q 027984 146 VYFKVVVDLDQLRTVNPSANRW-NPSEKYIHVVTRDGYEFWFMGF 189 (216)
Q Consensus 146 ~yYKVvIPL~kik~vnps~n~~-~P~eKYIqIvTvD~~eFWFMGF 189 (216)
....-.|||..+ .+....+.. .+..-.+.|.+-++..+.|..-
T Consensus 42 ~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~ 85 (102)
T smart00233 42 YKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSYLLQAE 85 (102)
T ss_pred CCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceEEEEcC
Confidence 456678999998 554444432 3556778888877778888753
No 15
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=58.81 E-value=8.1 Score=36.71 Aligned_cols=82 Identities=20% Similarity=0.429 Sum_probs=60.0
Q ss_pred ccCCccchhhhhh--cceeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCC
Q 027984 92 FHKLAGEKLLKAY--ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNP 169 (216)
Q Consensus 92 F~~~~~EkLlKa~--~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P 169 (216)
+-..|+|++.... .+=||+.-|=+ |++||++-|+..|+|---. |.|.||.=+|+++.-...+--+
T Consensus 149 L~lLp~E~v~~~~~gVwnls~dqGnL-GtfivTNvRiVW~A~~ne~------------fNVSiPylqi~~i~ir~SKfG~ 215 (339)
T PF07289_consen 149 LKLLPQEQVYSRVNGVWNLSSDQGNL-GTFIVTNVRIVWFADMNES------------FNVSIPYLQIKSIRIRDSKFGP 215 (339)
T ss_pred EeeCCccEEeeccCCEEEcccCCCce-eEEEEeeeEEEEEccCCcc------------ccccchHhhheeeeeeccccce
Confidence 4466777766655 36788888877 9999999999999997665 5799999999999776665543
Q ss_pred CCceEEEEEecCceeeeeec
Q 027984 170 SEKYIHVVTRDGYEFWFMGF 189 (216)
Q Consensus 170 ~eKYIqIvTvD~~eFWFMGF 189 (216)
+ +-|-|....-=.-.||
T Consensus 216 a---LVieT~~~sGgYVLGF 232 (339)
T PF07289_consen 216 A---LVIETSESSGGYVLGF 232 (339)
T ss_pred E---EEEEEeccCCcEEEEE
Confidence 3 4444544444445666
No 16
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=55.02 E-value=13 Score=21.86 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHHHhcCC
Q 027984 191 SYDKALKTLTEALRRFP 207 (216)
Q Consensus 191 nY~KA~k~Lq~Al~~~~ 207 (216)
+|++|++++++||+...
T Consensus 16 ~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 16 DYEEALEYYQRALELDP 32 (34)
T ss_dssp -HHHHHHHHHHHHHHST
T ss_pred CchHHHHHHHHHHHHCc
Confidence 68999999999997543
No 17
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=50.98 E-value=16 Score=21.38 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.3
Q ss_pred cHHHHHHHHHHHHhcCC
Q 027984 191 SYDKALKTLTEALRRFP 207 (216)
Q Consensus 191 nY~KA~k~Lq~Al~~~~ 207 (216)
+|++|+++|++|++...
T Consensus 16 ~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 16 DYEEALEYFEKALELNP 32 (34)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 68999999999997543
No 18
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=50.58 E-value=20 Score=18.20 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHHhcC
Q 027984 191 SYDKALKTLTEALRRF 206 (216)
Q Consensus 191 nY~KA~k~Lq~Al~~~ 206 (216)
+|++|..++++++...
T Consensus 16 ~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 16 DYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHccC
Confidence 5899999999998754
No 19
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=49.98 E-value=18 Score=20.63 Aligned_cols=19 Identities=32% Similarity=0.859 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHHhcCCCC
Q 027984 191 SYDKALKTLTEALRRFPDT 209 (216)
Q Consensus 191 nY~KA~k~Lq~Al~~~~~~ 209 (216)
+|++|.+.|++.+.++.+|
T Consensus 15 ~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 15 DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 6899999999999887654
No 20
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=49.94 E-value=24 Score=27.10 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=30.5
Q ss_pred ceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCC
Q 027984 115 VIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPS 170 (216)
Q Consensus 115 VaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~ 170 (216)
-.|.||++|.|+-+--|....- .-+.|||+.|..+.-....-+.+
T Consensus 36 q~G~l~LTsHRliw~d~~~~~~-----------~s~~l~L~~i~~~e~~~gf~~sS 80 (89)
T PF11605_consen 36 QNGRLYLTSHRLIWVDDSDPSK-----------HSIALPLSLISHIEYSAGFLKSS 80 (89)
T ss_dssp SCEEEEEESSEEEEEESSGHCH-----------H-EEEEGGGEEEEEEE-STTSSS
T ss_pred cCCEEEEEeeEEEEEcCCCCce-----------eEEEEEchHeEEEEEEccccCCC
Confidence 4799999999999986544321 23889999998885444433333
No 21
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=46.09 E-value=84 Score=23.52 Aligned_cols=54 Identities=20% Similarity=0.392 Sum_probs=34.8
Q ss_pred ceeeEEeecce--eEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCCCceEEEEEecC
Q 027984 115 VIGTLYISTQR--MAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDG 181 (216)
Q Consensus 115 VaG~LfiSt~k--vAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~eKYIqIvTvD~ 181 (216)
+.|+|+|+..+ +.+.-+. .++. . .|.||+..|+.-..+ .+..+.==++|+-.|+
T Consensus 12 ~~G~L~l~~d~~~~~W~~~~------~~~~-~----~v~i~~~~I~~lq~S--p~~s~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 12 KDGTLTLTEDRKPLEWTPKA------SDGP-S----TVSIPLNDIKNLQQS--PEGSPKVMLKIVLKDD 67 (79)
T ss_dssp EEEEEEEETTCSSEEEEECC------SSSS-S----EEEEETTTEEEEEE----TTSSTEEEEEEETTS
T ss_pred CCcEEEEecCCceEEEeecC------CCCC-c----eEEEEHHHhhhhccC--CCCCcceEEEEEEecC
Confidence 35999999988 7765431 1111 1 599999999986544 3334455678887766
No 22
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=45.75 E-value=14 Score=25.86 Aligned_cols=14 Identities=43% Similarity=0.774 Sum_probs=11.9
Q ss_pred ceEEEEEecCceee
Q 027984 172 KYIHVVTRDGYEFW 185 (216)
Q Consensus 172 KYIqIvTvD~~eFW 185 (216)
+||.++|-||++|=
T Consensus 1 ~~v~L~SsDg~~f~ 14 (62)
T PF03931_consen 1 MYVKLVSSDGQEFE 14 (62)
T ss_dssp -EEEEEETTSEEEE
T ss_pred CEEEEEcCCCCEEE
Confidence 68999999999984
No 23
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=44.00 E-value=87 Score=20.63 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=39.6
Q ss_pred CcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCCCceEEEEEec--Cceeeeeec
Q 027984 113 GPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRD--GYEFWFMGF 189 (216)
Q Consensus 113 GPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~eKYIqIvTvD--~~eFWFMGF 189 (216)
..-...++|+...+-++++.+-..... -++||..+. +....... -...-++|++.+ +..++|.--
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~~~~~~----------~~~~l~~~~-v~~~~~~~-~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDKKEIKP----------GSIPLSEIS-VEEDPDGS-DDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCCCcCCC----------CEEEccceE-EEECCCCC-CCCceEEEECCCCCcEEEEEEcC
Confidence 344455666677777776665432111 568888888 66554432 234678888886 777777543
No 24
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=41.54 E-value=24 Score=21.78 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=11.6
Q ss_pred cHHHHHHHHHHHHh
Q 027984 191 SYDKALKTLTEALR 204 (216)
Q Consensus 191 nY~KA~k~Lq~Al~ 204 (216)
+|++|..++++|+.
T Consensus 14 ~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 14 DYEKAIEYYEQALA 27 (36)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 69999999999764
No 25
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=40.80 E-value=95 Score=20.22 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=34.3
Q ss_pred EEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCCCceEEEEEecCceeeee
Q 027984 119 LYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM 187 (216)
Q Consensus 119 LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~eKYIqIvTvD~~eFWFM 187 (216)
+++....+.+|++.+-.. ....+-+|||.. ..+....+.. ..+..++|++.++..+.|.
T Consensus 21 ~~L~~~~l~~~~~~~~~~--------~~~~~~~i~l~~-~~v~~~~~~~-~~~~~f~i~~~~~~~~~~~ 79 (96)
T cd00821 21 FVLFNDLLLYYKKKSSKK--------SYKPKGSIPLSG-AEVEESPDDS-GRKNCFEIRTPDGRSYLLQ 79 (96)
T ss_pred EEEECCEEEEEECCCCCc--------CCCCcceEEcCC-CEEEECCCcC-CCCcEEEEecCCCcEEEEE
Confidence 444455666665544321 223456778877 3333332222 4568899988888888876
No 26
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=39.28 E-value=35 Score=27.02 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=26.0
Q ss_pred EEecCceeeeeec---------ccHHHHHHHHHHHHhcC
Q 027984 177 VTRDGYEFWFMGF---------ISYDKALKTLTEALRRF 206 (216)
Q Consensus 177 vTvD~~eFWFMGF---------vnY~KA~k~Lq~Al~~~ 206 (216)
+|-||+.+--||| ..|-++|+-+++.|++.
T Consensus 69 ltkdgf~lLvmg~tg~ka~~fK~~yI~~Fn~ME~~l~~~ 107 (108)
T TIGR02681 69 LTEDGFTIVAMGYTTPKAMKMKEKFIKEFNEMKEHLQKV 107 (108)
T ss_pred EcCCceEEEEecCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4999999999999 46888999999998753
No 27
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=39.13 E-value=27 Score=25.80 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=20.8
Q ss_pred eeeEEEEEeeeccccccccCCCCCC
Q 027984 143 QEWVYFKVVVDLDQLRTVNPSANRW 167 (216)
Q Consensus 143 ~~~~yYKVvIPL~kik~vnps~n~~ 167 (216)
..|..+++.||+++|..|....+..
T Consensus 12 I~~~~~~~~Ip~~~I~~v~~~~~~~ 36 (100)
T PF10882_consen 12 IRWPFGKITIPLAEIESVELVDDLP 36 (100)
T ss_pred EEEccccEEEEHHHcEEEEeccccC
Confidence 3567889999999999998777665
No 28
>PF01845 CcdB: CcdB protein; InterPro: IPR002712 CcdB protein is a topoisomerase poison from Escherichia coli []. It is responsible for killing plasmid-free segregants, and interferes with the activity of DNA gyrase. It acts to inhibit partitioning of the chromosomal DNA.; GO: 0008657 DNA topoisomerase (ATP-hydrolyzing) inhibitor activity, 0006276 plasmid maintenance; PDB: 2VUB_G 1VUB_D 3VUB_A 1X75_C 3HPW_B 4VUB_A 4ELZ_D 2KMT_B 4ELY_C 3JRZ_A ....
Probab=37.90 E-value=53 Score=25.92 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=23.7
Q ss_pred EEEeeecccccccc-CCCCCCCCCCceEEEEEecCceeeee
Q 027984 148 FKVVVDLDQLRTVN-PSANRWNPSEKYIHVVTRDGYEFWFM 187 (216)
Q Consensus 148 YKVvIPL~kik~vn-ps~n~~~P~eKYIqIvTvD~~eFWFM 187 (216)
..|||||-...... +...+-| =++++||.+|-.|
T Consensus 31 tRvVvPL~~~~~~~~~~~~~L~------P~~~i~g~~~vl~ 65 (102)
T PF01845_consen 31 TRVVVPLLPLSNLPGKPPRRLN------PVFEIEGEDYVLM 65 (102)
T ss_dssp EEEEEEEEEGGGTSSTS-TTTS-------EEEETTEEEEE-
T ss_pred cEEEEecCchhhcCcccCCcee------eEEEECCEEEEEE
Confidence 57999999988875 3344444 4789999998654
No 29
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=36.11 E-value=37 Score=30.07 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=39.9
Q ss_pred eeeEEEEEeeeccccccccCCCCCCCCCCceEEEEEecCceeeeeecccHHHHHHHHHHHHhc
Q 027984 143 QEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRR 205 (216)
Q Consensus 143 ~~~~yYKVvIPL~kik~vnps~n~~~P~eKYIqIvTvD~~eFWFMGFvnY~KA~k~Lq~Al~~ 205 (216)
..+..|.+.|||..|+++.-+.... .-.||.++|-||.-| --+--++.-.+.|-++|++
T Consensus 107 ~~~~~~aFsv~lsdl~Si~~~~p~~--G~~~lv~~~kdG~~~--p~L~Fh~gg~~~fl~~L~~ 165 (213)
T PF12068_consen 107 SSRSSYAFSVPLSDLKSIRVSKPSL--GWWYLVFILKDGTSL--PPLHFHDGGSKEFLKSLQR 165 (213)
T ss_pred CCCcceEEEEEhhheeeEEecCCCC--CceEEEEEecCCCcc--CceEEecCCHHHHHHHHHh
Confidence 3567889999999999995443322 568999999999654 3333345555555555543
No 30
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=35.48 E-value=76 Score=22.92 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=24.9
Q ss_pred EEeeeccccc-cccCCCCCCCCCCceEEEEEecCceeeeeeccc
Q 027984 149 KVVVDLDQLR-TVNPSANRWNPSEKYIHVVTRDGYEFWFMGFIS 191 (216)
Q Consensus 149 KVvIPL~kik-~vnps~n~~~P~eKYIqIvTvD~~eFWFMGFvn 191 (216)
||.||.+.-+ .++++-.. -+|+.|+.+|+....+...+.
T Consensus 2 ~IAv~~~~~~~~v~~hFg~----a~~f~i~d~~~~~~~~~~~~~ 41 (103)
T cd00851 2 KIAIPVSGNGGKVSPHFGR----APYFLIYDVETGKIKNVEVIE 41 (103)
T ss_pred EEEEEecCCCccccCcccc----CCEEEEEEccCCcEeEEEEec
Confidence 5677776666 56555443 367778887777666665553
No 31
>PRK13708 plasmid maintenance protein CcdB; Provisional
Probab=35.11 E-value=50 Score=26.39 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=25.2
Q ss_pred EEEeeeccccccccCCC-CCCCCCCceEEEEEecCceeeee
Q 027984 148 FKVVVDLDQLRTVNPSA-NRWNPSEKYIHVVTRDGYEFWFM 187 (216)
Q Consensus 148 YKVvIPL~kik~vnps~-n~~~P~eKYIqIvTvD~~eFWFM 187 (216)
-+|||||.......+.. .+-|| ++++||.+|-.|
T Consensus 30 tRvViPL~~~~~~~~~~~~rL~P------~~~I~g~~~vl~ 64 (101)
T PRK13708 30 RRMVIPLASARLLSDKVSRELYP------VVHIGDESYRLM 64 (101)
T ss_pred ceEEEeCccHHHCCCCcCCCcCc------eEEECCeEEEEE
Confidence 36999999888876544 33444 788999998754
No 32
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=34.21 E-value=27 Score=20.67 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHHHhcCCCCCCC
Q 027984 191 SYDKALKTLTEALRRFPDTSGG 212 (216)
Q Consensus 191 nY~KA~k~Lq~Al~~~~~~s~~ 212 (216)
.|++|.+++++|+.-.+..-|.
T Consensus 17 ~~~~A~~~~~~al~~~~~~~G~ 38 (42)
T PF13374_consen 17 RYEEALELLEEALEIRERLLGP 38 (42)
T ss_dssp -HHHHHHHHHHHHHHH------
T ss_pred hcchhhHHHHHHHHHHHHHhcc
Confidence 6899999999999866655443
No 33
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=33.93 E-value=41 Score=20.05 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHHhcC
Q 027984 191 SYDKALKTLTEALRRF 206 (216)
Q Consensus 191 nY~KA~k~Lq~Al~~~ 206 (216)
++++|+++|++|..+.
T Consensus 23 d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHcc
Confidence 6899999999998753
No 34
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=32.89 E-value=14 Score=37.24 Aligned_cols=37 Identities=24% Similarity=0.569 Sum_probs=30.4
Q ss_pred hhhccCcChhHHHHH--HhhhceeeeecCCcceeeeecc
Q 027984 56 HHLRISPRLSDAAMA--KIAQGTKVFTEGGYEKVFQQEF 92 (216)
Q Consensus 56 ~hlk~gp~~sdta~g--klslGakil~~GG~ekiFkQ~F 92 (216)
|.+|.-|++++...| +|.-|||.|-|||+..|=|-.|
T Consensus 345 Qk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~F 383 (621)
T KOG2415|consen 345 QKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVF 383 (621)
T ss_pred HHhhcCcchhhhhcCcceeeehhhhhccCCcccCccccc
Confidence 334445999999887 7899999999999998887666
No 35
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=32.85 E-value=73 Score=24.62 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=29.7
Q ss_pred CCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCCCce-EEEEEecC
Q 027984 131 DYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKY-IHVVTRDG 181 (216)
Q Consensus 131 drpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~eKY-IqIvTvD~ 181 (216)
++-|+|+...+. .-+=.|||..+++|....+.... .+| +||||-|.
T Consensus 30 ~~~L~Y~k~~~~----~~~g~I~L~~i~~ve~v~~~~~~-~~~~fqivt~~r 76 (98)
T cd01244 30 TTHLSWAKDVQC----KKSALIKLAAIKGTEPLSDKSFV-NVDIITIVCEDD 76 (98)
T ss_pred CCEEEEECCCCC----ceeeeEEccceEEEEEcCCcccC-CCceEEEEeCCC
Confidence 445666543332 34568999999999766654322 245 89999775
No 36
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=27.56 E-value=90 Score=22.41 Aligned_cols=39 Identities=10% Similarity=0.015 Sum_probs=25.3
Q ss_pred EEeeeccccccccCCCCCCCCCCceEEEEEecCceeeeeeccc
Q 027984 149 KVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFIS 191 (216)
Q Consensus 149 KVvIPL~kik~vnps~n~~~P~eKYIqIvTvD~~eFWFMGFvn 191 (216)
||.||...-+.|+++--+ -+|+.|+.+|+.++++...+.
T Consensus 1 kIAi~~~~~~~v~~hFg~----A~~f~I~d~~~~~~~~~e~~~ 39 (102)
T cd00562 1 KIAVASSDGGRVDQHFGR----APEFLIYEVEPGGIKLVEVRE 39 (102)
T ss_pred CEEEEcCCCCEehhhcCC----CCeEEEEEEcCCcEEEEEEEe
Confidence 466777666656555444 367788888887777666554
No 37
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=27.40 E-value=69 Score=18.60 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=14.3
Q ss_pred ccHHHHHHHHHHHHhcC
Q 027984 190 ISYDKALKTLTEALRRF 206 (216)
Q Consensus 190 vnY~KA~k~Lq~Al~~~ 206 (216)
.++++|++++++|..+.
T Consensus 19 ~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 19 KDLEKALEYYKKAAELG 35 (36)
T ss_pred cCHHHHHHHHHHHHHcc
Confidence 48899999999998753
No 38
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=26.08 E-value=66 Score=21.11 Aligned_cols=18 Identities=50% Similarity=0.855 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHHHhcCCC
Q 027984 191 SYDKALKTLTEALRRFPD 208 (216)
Q Consensus 191 nY~KA~k~Lq~Al~~~~~ 208 (216)
+|+.|++.|+++++...+
T Consensus 6 ~~~~A~~~~~~~l~~~p~ 23 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPD 23 (68)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHCCC
Confidence 588999999999887654
No 39
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=25.68 E-value=88 Score=23.79 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=22.1
Q ss_pred EeeeccccccccCCCCCCCCCCc---eEEEEEecCce
Q 027984 150 VVVDLDQLRTVNPSANRWNPSEK---YIHVVTRDGYE 183 (216)
Q Consensus 150 VvIPL~kik~vnps~n~~~P~eK---YIqIvTvD~~e 183 (216)
..|||..|..| .-+.|.-+ ||+++..++-+
T Consensus 27 ~~ipl~~i~gV----~~~~pg~~~~G~Lrf~~~~g~~ 59 (94)
T PF14472_consen 27 KTIPLSAISGV----EWKPPGGLTNGYLRFVLRGGAD 59 (94)
T ss_pred EEEEHHHcceE----EEEcCCceeEEEEEEEECCcCc
Confidence 67999999999 44445534 89999887443
No 40
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=25.04 E-value=44 Score=23.56 Aligned_cols=17 Identities=47% Similarity=0.909 Sum_probs=16.1
Q ss_pred eeeecccHHHHHHHHHH
Q 027984 185 WFMGFISYDKALKTLTE 201 (216)
Q Consensus 185 WFMGFvnY~KA~k~Lq~ 201 (216)
||.|+++=+.|-+.|++
T Consensus 3 w~~g~i~r~~Ae~lL~~ 19 (84)
T smart00252 3 WYHGFISREEAEKLLKN 19 (84)
T ss_pred eecccCCHHHHHHHHhc
Confidence 99999999999999986
No 41
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=24.69 E-value=1.1e+02 Score=22.80 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=24.9
Q ss_pred EEeeeccccccccCCCCCCCCCCceEEEEEecCceeeeeecccH
Q 027984 149 KVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISY 192 (216)
Q Consensus 149 KVvIPL~kik~vnps~n~~~P~eKYIqIvTvD~~eFWFMGFvnY 192 (216)
||.||...-..|+++--+- +|..|+.+|+.+++|......
T Consensus 1 kIAv~s~~~~~V~~HFG~a----~~F~Iydv~~~~~~~ve~~~~ 40 (106)
T cd00852 1 LVAVASKGGGRVNQHFGHA----TEFQIYEVSGSGVKFVEHRKV 40 (106)
T ss_pred CEEEECCCCCEehhhccCC----CEEEEEEEcCCcEEEEEEeec
Confidence 3455554444555555443 677788888888888776644
No 42
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=24.64 E-value=63 Score=21.36 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHhcCC
Q 027984 191 SYDKALKTLTEALRRFP 207 (216)
Q Consensus 191 nY~KA~k~Lq~Al~~~~ 207 (216)
+|++|++++++||+...
T Consensus 18 ~~~~A~~~~~~ai~~~p 34 (69)
T PF13414_consen 18 DYEEAIEYFEKAIELDP 34 (69)
T ss_dssp HHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 58888888888887543
No 43
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=24.49 E-value=58 Score=30.24 Aligned_cols=86 Identities=22% Similarity=0.339 Sum_probs=46.8
Q ss_pred CcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCCCceE--EEEEecCc-----eee
Q 027984 113 GPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI--HVVTRDGY-----EFW 185 (216)
Q Consensus 113 GPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~eKYI--qIvTvD~~-----eFW 185 (216)
|=--|+|||++.||-|-|+.+-.- .--.++|+.-|+.++--+-.- .--|| +|-.|-+- -=|
T Consensus 45 g~kkGtlyLTs~RiIFis~~~~D~----------fksF~MPf~~mkd~klnQPvF--~aNyikGtV~pvpgGg~~g~as~ 112 (261)
T KOG3294|consen 45 GTKKGTLYLTSHRIIFISSKPKDA----------FKSFMMPFNLMKDVKLNQPVF--GANYIKGTVQPVPGGGWEGEASF 112 (261)
T ss_pred cceeeeEEeecceEEEecCCCCcc----------hhhhcchhhhhhhceecCccc--ccceeeeeEeecCCCCccceeEE
Confidence 334699999999999999875320 012567777777663222111 11233 22222221 112
Q ss_pred e-----eecccHHHHHHHHHHHHhcCCCCC
Q 027984 186 F-----MGFISYDKALKTLTEALRRFPDTS 210 (216)
Q Consensus 186 F-----MGFvnY~KA~k~Lq~Al~~~~~~s 210 (216)
= -|=++|-.++-.+-+..++.+.-|
T Consensus 113 Kl~F~~GG~ieFgq~~l~~~s~a~r~r~~s 142 (261)
T KOG3294|consen 113 KLTFNEGGCIEFGQLLLQAASRASRGRPLS 142 (261)
T ss_pred EEEecCCCchhHHHHHHHHHHHHHhccccc
Confidence 2 366777777766666655555444
No 44
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=24.33 E-value=66 Score=21.86 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHHhc
Q 027984 191 SYDKALKTLTEALRR 205 (216)
Q Consensus 191 nY~KA~k~Lq~Al~~ 205 (216)
.|++|+.++++|+..
T Consensus 20 ~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 20 RYDEALDYYEKALDI 34 (78)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 689999999999975
No 45
>PF04326 AAA_4: Divergent AAA domain; InterPro: IPR007421 AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate. This entry is related to IPR003959 from INTERPRO, and presumably has the same function (ATP-binding). A number of the archaeal members of this group are annotated as ATP-dependent DNA helicases 3.6.1 from EC.; GO: 0005524 ATP binding; PDB: 2KYY_A 3LMM_D.
Probab=24.20 E-value=55 Score=24.32 Aligned_cols=31 Identities=23% Similarity=0.505 Sum_probs=22.3
Q ss_pred eeecccCCccch---hhhhhcceeecCCCcceeeEEee
Q 027984 88 FQQEFHKLAGEK---LLKAYACYISTSNGPVIGTLYIS 122 (216)
Q Consensus 88 FkQ~F~~~~~Ek---LlKa~~CYLSTsaGPVaG~LfiS 122 (216)
||+.+...+..+ |.|+..|++-| .| |+|+|-
T Consensus 7 fK~~~~~~~~~~~~~i~k~i~AfaN~-~G---G~iiiG 40 (122)
T PF04326_consen 7 FKESLNKSSKKGKKEIAKTICAFANT-EG---GYIIIG 40 (122)
T ss_dssp EE-GCCTCCCTEE--HHHHHHHHHCS-TT---EEEEET
T ss_pred EEecCCCCccchHHHHHHHHHHHhCC-CC---CEEEEE
Confidence 666666655544 99999999988 45 888874
No 46
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=23.73 E-value=86 Score=19.83 Aligned_cols=19 Identities=37% Similarity=0.345 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHHhcCCCC
Q 027984 191 SYDKALKTLTEALRRFPDT 209 (216)
Q Consensus 191 nY~KA~k~Lq~Al~~~~~~ 209 (216)
++++|.+.|+++|+...+.
T Consensus 16 ~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 16 QPDEAERLLRRALALDPDD 34 (44)
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 6899999999999876543
No 47
>PF08909 DUF1854: Domain of unknown function (DUF1854); InterPro: IPR015005 These protein is functionally uncharacterised. It is found at the C terminus of a number of ATP transporter proteins suggesting it may be involved in ligand binding.
Probab=22.94 E-value=56 Score=27.30 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=24.0
Q ss_pred CCceEEEEEecCce-eeeeecccHHH-HHHHHHHHHh
Q 027984 170 SEKYIHVVTRDGYE-FWFMGFISYDK-ALKTLTEALR 204 (216)
Q Consensus 170 ~eKYIqIvTvD~~e-FWFMGFvnY~K-A~k~Lq~Al~ 204 (216)
.+.||-|++.||+| +|.=-.=--+. +.+.++++|.
T Consensus 17 P~~~isl~~~~G~El~~I~~l~~L~~~~r~lle~eLa 53 (133)
T PF08909_consen 17 PDEGISLVDEDGHELAWIDDLDDLPEESRALLEEELA 53 (133)
T ss_pred CCccEEEEcCCCcEEEEEcChhHCCHHHHHHHHHHHH
Confidence 35799999999999 88765443333 3455566654
No 48
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.25 E-value=1.4e+02 Score=24.73 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=28.2
Q ss_pred eEEEEEeeeccccccccCCCCCC---CCCCceEEEEEecCceeeeee
Q 027984 145 WVYFKVVVDLDQLRTVNPSANRW---NPSEKYIHVVTRDGYEFWFMG 188 (216)
Q Consensus 145 ~~yYKVvIPL~kik~vnps~n~~---~P~eKYIqIvTvD~~eFWFMG 188 (216)
.-||| .|||..|-.|.++.+.- ....-..+|+| .+--| |+|
T Consensus 37 skyyK-eIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T-~~~vY-~VG 80 (117)
T cd01239 37 SRYYK-EIPLAEILSVSSNNGDSVLAKHPPHCFEIRT-TTNVY-FVG 80 (117)
T ss_pred CeeeE-EeehHHheEEeccCCCcCCCCCCCcEEEEEe-cCEEE-Eec
Confidence 44787 58999999997654431 24667899999 55554 444
No 49
>PF10756 bPH_6: Bacterial PH domain; InterPro: IPR019692 Proteins in this entry are conserved in the Actinomycetales. Although several members are annotated as RbiX homologues, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed. This entry also includes low molecular weight protein antigen 6.
Probab=22.18 E-value=75 Score=22.58 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=30.3
Q ss_pred EEeeeccccccccCCCCCCCCCCceEEEEEecCceeeeeec
Q 027984 149 KVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGF 189 (216)
Q Consensus 149 KVvIPL~kik~vnps~n~~~P~eKYIqIvTvD~~eFWFMGF 189 (216)
...||.++|..|. .....+++.+.+.|+..++||+.
T Consensus 19 t~~vpW~~I~~v~-----~~~~~~~v~~~~~dg~~~~l~~~ 54 (73)
T PF10756_consen 19 TRRVPWSEIAGVR-----FRRGRRWVRLDLRDGRLVPLPAV 54 (73)
T ss_pred eEEEChHHeEEEE-----ccCCceEEEEECCCCCEEEEeeE
Confidence 4679999999985 44666779999999999999985
No 50
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=21.39 E-value=70 Score=24.09 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=16.2
Q ss_pred ceEEEEEecCceeeeeecccHHHHH
Q 027984 172 KYIHVVTRDGYEFWFMGFISYDKAL 196 (216)
Q Consensus 172 KYIqIvTvD~~eFWFMGFvnY~KA~ 196 (216)
+||.++|-||++| .|...-|.
T Consensus 2 ~~v~L~S~Dg~~f----~v~~~~a~ 22 (104)
T smart00512 2 KYIKLISSDGEVF----EVEREVAR 22 (104)
T ss_pred CeEEEEeCCCCEE----EecHHHHH
Confidence 6999999999998 35555443
No 51
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=21.33 E-value=3.7e+02 Score=20.34 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=40.5
Q ss_pred CcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCCCceEE--EEEec--Cceeeeee
Q 027984 113 GPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIH--VVTRD--GYEFWFMG 188 (216)
Q Consensus 113 GPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~eKYIq--IvTvD--~~eFWFMG 188 (216)
|.-.|.||....-+.|-.++|. ++||++.|..|+=+-- ...+.|.-. |++-| +-+..|.+
T Consensus 9 ka~~g~L~pl~~~l~f~~~kP~---------------~~i~~~dI~~v~feRv-~~~~~ktFDl~v~~k~~~~~~~~fs~ 72 (95)
T PF08512_consen 9 KANEGFLYPLEKCLLFGLEKPP---------------FVIPLDDIESVEFERV-SSFSSKTFDLVVILKDYEGPPHEFSS 72 (95)
T ss_dssp TTEEEEEEEESSEEEEECSSS----------------EEEEGGGEEEEEEE---ESSSSSEEEEEEEETT-TS-EEEEEE
T ss_pred cccCEEEEEccceEEEecCCCe---------------EEEEhhHeeEEEEEec-ccCcceEEEEEEEEecCCCCcEEEee
Confidence 4446799999998888778886 5789999998865332 456677754 45555 56666655
No 52
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=20.89 E-value=74 Score=25.61 Aligned_cols=15 Identities=40% Similarity=0.877 Sum_probs=13.6
Q ss_pred eeEEeecceeEEeeC
Q 027984 117 GTLYISTQRMAFCSD 131 (216)
Q Consensus 117 G~LfiSt~kvAFcSd 131 (216)
|.|||.+.+|.|-|+
T Consensus 1 g~L~Vt~~~l~w~~~ 15 (135)
T PF03517_consen 1 GTLYVTESRLIWFSN 15 (135)
T ss_dssp EEEEEETTEEEEEET
T ss_pred CEEEEecCEEEEECC
Confidence 899999999999883
No 53
>cd08544 Reeler Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins. This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.
Probab=20.33 E-value=1.3e+02 Score=23.48 Aligned_cols=34 Identities=18% Similarity=0.376 Sum_probs=24.6
Q ss_pred EEEEEeeeccccccccCCCCCCCCCCceEEEEEecCceeeeeecc
Q 027984 146 VYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFI 190 (216)
Q Consensus 146 ~yYKVvIPL~kik~vnps~n~~~P~eKYIqIvTvD~~eFWFMGFv 190 (216)
.+|.|.++-. ...|.|+|---++..+- -.|.||+
T Consensus 19 ~py~i~~~~~----------~y~pG~~~~Vtl~~~~~-~~F~GF~ 52 (135)
T cd08544 19 SPYSITISGN----------SYVPGETYTVTLSGSSP-SPFRGFL 52 (135)
T ss_pred CCEEEEeCCC----------EECCCCEEEEEEECCCC-CceeEEE
Confidence 7898888655 55688888655555444 6899997
Done!