Query 027984
Match_columns 216
No_of_seqs 118 out of 137
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 06:40:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 92.4 0.39 1.3E-05 45.9 8.2 102 92-205 7-112 (528)
2 1lw3_A Myotubularin-related pr 90.0 0.69 2.4E-05 45.5 7.6 120 72-204 60-183 (657)
3 2hth_B Vacuolar protein sortin 84.2 1.2 4.1E-05 35.3 4.5 51 112-174 35-85 (140)
4 2yf0_A Myotubularin-related pr 74.6 18 0.00061 34.5 9.9 70 108-194 18-87 (512)
5 2cay_A VPS36 PH domain, vacuol 70.4 3.4 0.00012 33.0 3.4 48 112-170 48-95 (145)
6 1vcb_B Protein (elongin C); tu 47.0 7.1 0.00024 29.6 1.4 20 167-186 12-31 (112)
7 1hv2_A Elongin C, ELC1; protei 42.5 12 0.0004 27.5 1.9 17 170-186 2-18 (99)
8 2d9z_A Protein kinase C, NU ty 38.5 18 0.0006 29.1 2.5 43 143-188 43-89 (129)
9 2fnj_C Transcription elongatio 38.5 12 0.0004 27.3 1.4 15 172-186 1-15 (96)
10 4ajy_C Transcription elongatio 33.2 16 0.00054 26.3 1.3 14 173-186 3-16 (97)
11 1zyi_A Methylosome subunit pic 32.1 46 0.0016 27.4 4.1 28 104-132 32-59 (171)
12 2coa_A Protein kinase C, D2 ty 31.7 27 0.00091 27.8 2.5 41 143-185 43-87 (125)
13 1eaz_A Tandem PH domain contai 30.6 58 0.002 22.7 4.0 58 150-208 55-115 (125)
14 4ag4_A Epithelial discoidin do 27.3 29 0.001 31.3 2.3 60 97-156 249-315 (351)
15 2aze_B Transcription factor E2 23.5 24 0.00081 26.9 0.8 15 102-116 85-99 (106)
16 3r5t_A Ferric vibriobactin ABC 22.9 54 0.0019 27.0 3.0 35 175-210 259-293 (305)
17 1zu2_A Mitochondrial import re 22.8 25 0.00087 28.1 0.9 22 186-207 101-122 (158)
18 3vub_A CCDB; topoisomerase poi 21.6 1.1E+02 0.0036 23.1 4.1 36 147-187 29-64 (101)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=92.37 E-value=0.39 Score=45.90 Aligned_cols=102 Identities=20% Similarity=0.185 Sum_probs=61.6
Q ss_pred ccCCccchhhhhhcc--eeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCC
Q 027984 92 FHKLAGEKLLKAYAC--YISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNP 169 (216)
Q Consensus 92 F~~~~~EkLlKa~~C--YLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P 169 (216)
|...|||.++..-.- |+..-.|++.|+|||++-|+.|.++.. + . .+.+-|||..|..|.........
T Consensus 7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~------~-~----~~~~~iPL~~I~~vek~~~~s~~ 75 (528)
T 1zsq_A 7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------D-P----PFVLDASLGVINRVEKIGGASSR 75 (528)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------S-S----CEEEEEEGGGEEEEEEECCTTCC
T ss_pred CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC------C-c----cEEEEeeccceEEEEEcCCCCcC
Confidence 567899998855211 555557899999999999999999521 1 1 23568999887777543211111
Q ss_pred --CCceEEEEEecCceeeeeecccHHHHHHHHHHHHhc
Q 027984 170 --SEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRR 205 (216)
Q Consensus 170 --~eKYIqIvTvD~~eFWFMGFvnY~KA~k~Lq~Al~~ 205 (216)
.--.|+|..-|- ..+=.+|-.=+...+.+-++|++
T Consensus 76 ~~~~~~l~I~CKDf-r~~~f~f~~~~~~~~~v~~~L~~ 112 (528)
T 1zsq_A 76 GENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLMK 112 (528)
T ss_dssp STTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHHH
T ss_pred CCCCceEEEEccCC-eEEEEEecCchHHHHHHHHHHHH
Confidence 112477777664 44444565433323444455554
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=90.03 E-value=0.69 Score=45.48 Aligned_cols=120 Identities=20% Similarity=0.192 Sum_probs=60.8
Q ss_pred hhhceeeeecCCcceeeeecccCCccchhhhhhc-c-eeecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEE
Q 027984 72 IAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYA-C-YISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFK 149 (216)
Q Consensus 72 lslGakil~~GG~ekiFkQ~F~~~~~EkLlKa~~-C-YLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYK 149 (216)
+.+.-++|+.|-.. -=.--|...|||.+...-. . |+..-.|++.|+|||++.|+.|.+... +. .+.
T Consensus 60 ~~~~~~~~~~~~~~-~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~--------~~---~~~ 127 (657)
T 1lw3_A 60 FSPDLRVLRESNKL-AEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFV 127 (657)
T ss_dssp ------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEE
T ss_pred hhhhhhhhhccccc-ccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC--------Cc---ceE
Confidence 44444455554322 1122477899999985421 1 444456899999999999999998521 11 234
Q ss_pred EeeeccccccccCCCCCCCCCC--ceEEEEEecCceeeeeecccHHHHHHHHHHHHh
Q 027984 150 VVVDLDQLRTVNPSANRWNPSE--KYIHVVTRDGYEFWFMGFISYDKALKTLTEALR 204 (216)
Q Consensus 150 VvIPL~kik~vnps~n~~~P~e--KYIqIvTvD~~eFWFMGFvnY~KA~k~Lq~Al~ 204 (216)
+-|||..|..|..........+ -.|+|..-|- ..+=.+|-.=+...+.+-++|.
T Consensus 128 ~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDf-R~~~f~f~~~~~~~~~v~~~L~ 183 (657)
T 1lw3_A 128 LDASLGVINRVEKIGGASSRGENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLM 183 (657)
T ss_dssp EEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHH
T ss_pred EEecccceEEEEecCCCcccCCCCceEEEEecCC-cEEEEEeCCccchHHHHHHHHH
Confidence 6799988877765322111111 2477766664 4444456533222333334443
No 3
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=84.21 E-value=1.2 Score=35.33 Aligned_cols=51 Identities=22% Similarity=0.182 Sum_probs=35.5
Q ss_pred CCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCCCceE
Q 027984 112 NGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI 174 (216)
Q Consensus 112 aGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~eKYI 174 (216)
+.--.|+||++|.||-|-.+.. . ..-+.|||..|+.+...+..-..+-|++
T Consensus 35 ~~~k~G~l~LTshRli~~d~~~-~-----------~~s~~lpl~~v~~~e~~~~~f~~s~Ki~ 85 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIWRDQKN-H-----------ECCMAILLSQIVFIEEQAAGIGKSAKIV 85 (140)
T ss_dssp SCCCCEEEEEESSEEEEEETTC-C-----------SCCEEEEGGGEEEEEEECCTTSSCCEEE
T ss_pred CCCcCCEEEEecCEEEEecCCC-C-----------ceEEEEEhHHeeeeeeeccccccCceEE
Confidence 3458899999999999965532 1 0237888888888877666555555554
No 4
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=74.61 E-value=18 Score=34.47 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=40.3
Q ss_pred eecCCCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCCCceEEEEEecCceeeee
Q 027984 108 ISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM 187 (216)
Q Consensus 108 LSTsaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~eKYIqIvTvD~~eFWFM 187 (216)
++.+-+|+.|+|||++.|+.|.+|.. +. +.||+..|.+|.-.... ....-|+|..-|-.-+=|
T Consensus 18 ~~~~~~~~~GtL~lTn~~LiF~~~~~--------~e------~wi~~~~I~~VeK~~~~--~~~~~l~I~CKDfr~~~f- 80 (512)
T 2yf0_A 18 FSTSNKSLTGTLYLTATHLLFIDSHQ--------KE------TWILHHHIASVEKLALT--TSGCPLVIQCKNFRTVHF- 80 (512)
T ss_dssp ------CCEEEEEECSSEEEEEESSS--------CE------EEEEGGGEEEEEECCCB--TTBEEEEEEETTSCEEEE-
T ss_pred cCCCCCceeEEEEEECCEEEEeCCCC--------Cc------eEecccceeEEEEecCC--CCCceEEEEecCCcEEEE-
Confidence 34567899999999999999999532 22 45677777776432110 122457777777655444
Q ss_pred ecccHHH
Q 027984 188 GFISYDK 194 (216)
Q Consensus 188 GFvnY~K 194 (216)
.|-.=+.
T Consensus 81 ~f~~~~~ 87 (512)
T 2yf0_A 81 IVPRERD 87 (512)
T ss_dssp EESCHHH
T ss_pred EeCChHH
Confidence 4554433
No 5
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=70.42 E-value=3.4 Score=33.04 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=33.3
Q ss_pred CCcceeeEEeecceeEEeeCCCceeeCCCCCeeeEEEEEeeeccccccccCCCCCCCCC
Q 027984 112 NGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPS 170 (216)
Q Consensus 112 aGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~yYKVvIPL~kik~vnps~n~~~P~ 170 (216)
.+--.|.|||+|.||-|-.+.+=.+ .-+.|||..|+.+...+..-.++
T Consensus 48 ~~~k~G~lyLTshRIIyv~~~~~~~-----------~SfslPL~~v~~~e~~~~~fg~s 95 (145)
T 2cay_A 48 LQRQRGRIFLTSQRIIYIDDAKPTQ-----------NSLGLELDDLAYVNYSSGFLTRS 95 (145)
T ss_dssp TTCSSEEEEEESSEEEEEESSCHHH-----------HCEEEEGGGEEEEEEECSSSSSS
T ss_pred cCCCccEEEEEcCeEEEecCCCCcc-----------eEEEeEhHheeeeeEEcCccccC
Confidence 4668999999999999975532110 22678888888777666554444
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=46.96 E-value=7.1 Score=29.56 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=13.9
Q ss_pred CCCCCceEEEEEecCceeee
Q 027984 167 WNPSEKYIHVVTRDGYEFWF 186 (216)
Q Consensus 167 ~~P~eKYIqIvTvD~~eFWF 186 (216)
+-|..+||.++|-||++|--
T Consensus 12 ~~~~~~~v~L~SsDG~~F~V 31 (112)
T 1vcb_B 12 EGPDAMYVKLISSDGHEFIV 31 (112)
T ss_dssp -----CEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEcCCCCEEEE
Confidence 34667999999999999964
No 7
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=42.48 E-value=12 Score=27.47 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=14.8
Q ss_pred CCceEEEEEecCceeee
Q 027984 170 SEKYIHVVTRDGYEFWF 186 (216)
Q Consensus 170 ~eKYIqIvTvD~~eFWF 186 (216)
+.+||.++|-||++|--
T Consensus 2 ~~~~v~L~SsDg~~f~V 18 (99)
T 1hv2_A 2 SQDFVTLVSKDDKEYEI 18 (99)
T ss_dssp CCSEEEEEETTTEEEEE
T ss_pred CCcEEEEEecCCCEEEE
Confidence 36899999999999964
No 8
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.46 E-value=18 Score=29.09 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=31.1
Q ss_pred eeeEEEEEeeeccccccccCCCCCCC--CCC--ceEEEEEecCceeeeee
Q 027984 143 QEWVYFKVVVDLDQLRTVNPSANRWN--PSE--KYIHVVTRDGYEFWFMG 188 (216)
Q Consensus 143 ~~~~yYKVvIPL~kik~vnps~n~~~--P~e--KYIqIvTvD~~eFWFMG 188 (216)
...-|||. |||.+|-.|.|..+-.. +.. -+.+|+| ++-.|. +|
T Consensus 43 ~~~k~yke-IpLseIL~v~~~~~~~~~~~~~~phcFEi~T-~~~~y~-Vg 89 (129)
T 2d9z_A 43 SGSKYYKE-IPLSEILRISSPRDFTNISQGSNPHCFEIIT-DTMVYF-VG 89 (129)
T ss_dssp SCCSCCCE-ECTTTCCEECCTTCCCCSSSCSCCCSEEEEC-SSCEEE-EC
T ss_pred CCCceece-eeHHHhcccccccCccccCCCCCCceEEEEE-CCEEEE-Ec
Confidence 34558888 99999999999876653 222 6799998 676664 44
No 9
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=38.45 E-value=12 Score=27.27 Aligned_cols=15 Identities=33% Similarity=0.762 Sum_probs=13.5
Q ss_pred ceEEEEEecCceeee
Q 027984 172 KYIHVVTRDGYEFWF 186 (216)
Q Consensus 172 KYIqIvTvD~~eFWF 186 (216)
+||.++|-||++|--
T Consensus 1 ~~v~L~SsDg~~f~V 15 (96)
T 2fnj_C 1 MYVKLISSDGHEFIV 15 (96)
T ss_dssp CEEEEECTTSCEEEE
T ss_pred CeEEEEecCCCEEEe
Confidence 699999999999964
No 10
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=33.21 E-value=16 Score=26.28 Aligned_cols=14 Identities=36% Similarity=0.850 Sum_probs=12.4
Q ss_pred eEEEEEecCceeee
Q 027984 173 YIHVVTRDGYEFWF 186 (216)
Q Consensus 173 YIqIvTvD~~eFWF 186 (216)
||.++|.||++|--
T Consensus 3 ~v~L~SsDg~~F~v 16 (97)
T 4ajy_C 3 YVKLISSDGHEFIV 16 (97)
T ss_dssp EEEEECTTCCEEEE
T ss_pred EEEEEecCCcEEEe
Confidence 89999999999853
No 11
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=32.12 E-value=46 Score=27.44 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=21.3
Q ss_pred hcceeecCCCcceeeEEeecceeEEeeCC
Q 027984 104 YACYISTSNGPVIGTLYISTQRMAFCSDY 132 (216)
Q Consensus 104 ~~CYLSTsaGPVaG~LfiSt~kvAFcSdr 132 (216)
-++||-.. ..-.|+|||++.||.+-|+.
T Consensus 32 v~~vl~~~-~~g~GtLyVt~~~l~W~~~~ 59 (171)
T 1zyi_A 32 TEAVLNGK-GLGTGTLYIAESRLSWLDGS 59 (171)
T ss_dssp EEEEBTTB-CCCEEEEEEETTEEEEEETT
T ss_pred EEEEECCC-ccCceEEEEEcCEEEEEcCC
Confidence 45777553 33469999999999999874
No 12
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=31.67 E-value=27 Score=27.83 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=29.9
Q ss_pred eeeEEEEEeeeccccccccCCCCCCC--CC--CceEEEEEecCceee
Q 027984 143 QEWVYFKVVVDLDQLRTVNPSANRWN--PS--EKYIHVVTRDGYEFW 185 (216)
Q Consensus 143 ~~~~yYKVvIPL~kik~vnps~n~~~--P~--eKYIqIvTvD~~eFW 185 (216)
+..-|||. |||.+|-.|.+..+... +. .-..+|+| .+-.|.
T Consensus 43 ~~~~~yke-IpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T-~~~~yy 87 (125)
T 2coa_A 43 TTNRYYKE-IPLSEILTVESAQNFSLVPPGTNPHCFEIVT-ANATYF 87 (125)
T ss_dssp SCSSCSEE-EETTTCCEEEESCCCSSSCTTSCCEEEEEEC-SSCCCC
T ss_pred CCCceeee-eehhHeecccccccccccCCCCCCceEEEEe-CCeEEE
Confidence 33558887 99999999999876653 22 26799999 566664
No 13
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=30.60 E-value=58 Score=22.68 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=32.0
Q ss_pred EeeeccccccccCCCCCCCCC-CceEEEEEecCceeeeeec--ccHHHHHHHHHHHHhcCCC
Q 027984 150 VVVDLDQLRTVNPSANRWNPS-EKYIHVVTRDGYEFWFMGF--ISYDKALKTLTEALRRFPD 208 (216)
Q Consensus 150 VvIPL~kik~vnps~n~~~P~-eKYIqIvTvD~~eFWFMGF--vnY~KA~k~Lq~Al~~~~~ 208 (216)
=+|+|..+..|........+. .--++|+| ++..|.|..= -..+.=+..|++|+...+.
T Consensus 55 g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~-~~r~~~l~a~s~~e~~~W~~al~~~i~~~~~ 115 (125)
T 1eaz_A 55 RVIPLKEVHKVQECKQSDIMMRDNLFEIVT-TSRTFYVQADSPEEMHSWIKAVSGAIVAQRG 115 (125)
T ss_dssp EEEEGGGCCEEEECTTHHHHTCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHHHTC-
T ss_pred eEEEcccceEEeeccccccCCcCCEEEEEe-CCcEEEEEcCCHHHHHHHHHHHHHHHHhccC
Confidence 367888877765543332223 23456664 5667776432 2234445677788766553
No 14
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=27.31 E-value=29 Score=31.27 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=44.8
Q ss_pred cchhhhhhcceeecCCCcceeeEEeecceeEEeeC-------CCceeeCCCCCeeeEEEEEeeeccc
Q 027984 97 GEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSD-------YPLSHYSSSGQQEWVYFKVVVDLDQ 156 (216)
Q Consensus 97 ~EkLlKa~~CYLSTsaGPVaG~LfiSt~kvAFcSd-------rpl~~~sp~g~~~~~yYKVvIPL~k 156 (216)
=+++++=.+|.|-+..=.--|+-.-|..++=|+.| .|+.|..+....-++..-|.|||++
T Consensus 249 Fd~~RnFt~~~ih~~n~~~~~v~~f~~~~~~Fs~~~~~~~~~~p~~~~~~~d~~~~~ar~v~i~l~~ 315 (351)
T 4ag4_A 249 FDRLRAFQAMQVHCNNMHTLGARLPGGVECRFRRGPAMAWEGEPMRHNLGGNLGDPRARAVSVPLGG 315 (351)
T ss_dssp EEEEEEEEEEEEEECCCGGGTBCCCSEEEEEEECSSSSSCSSSCEEEECSSCCSCCSCEEEEEEEEE
T ss_pred eCcEEEEEEEEEEecccccccceeeeEEEEEEECCCCccccCCceEeecCCCcCCCccceEEEeCCC
Confidence 45677778888888888878888888888888888 3898876543333444569999984
No 15
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=23.47 E-value=24 Score=26.90 Aligned_cols=15 Identities=13% Similarity=0.479 Sum_probs=13.5
Q ss_pred hhhcceeecCCCcce
Q 027984 102 KAYACYISTSNGPVI 116 (216)
Q Consensus 102 Ka~~CYLSTsaGPVa 116 (216)
+.|++||..+.|||-
T Consensus 85 ~~yqi~LkS~~GPId 99 (106)
T 2aze_B 85 ENFQISLKSKQGPID 99 (106)
T ss_dssp SCEEEEEECSSSCCE
T ss_pred cceEEEEECCCCCEE
Confidence 489999999999984
No 16
>3r5t_A Ferric vibriobactin ABC transporter, periplasmic vibriobactin-binding protein; iron-vibriobactin transport protein; HET: VBN; 1.45A {Vibrio cholerae} PDB: 3r5s_A*
Probab=22.85 E-value=54 Score=26.98 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=28.3
Q ss_pred EEEEecCceeeeeecccHHHHHHHHHHHHhcCCCCC
Q 027984 175 HVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTS 210 (216)
Q Consensus 175 qIvTvD~~eFWFMGFvnY~KA~k~Lq~Al~~~~~~s 210 (216)
+|+.+|...||+ |.+.-+..++.|.+++..-+.+|
T Consensus 259 rV~~~~~~~~~~-g~~s~~~~l~~l~~~l~~~~~~~ 293 (305)
T 3r5t_A 259 QVYGLGENSFRI-DLFSAREIINSLLRRFAGEQAQS 293 (305)
T ss_dssp CEEEEETTCSSC-CHHHHHHHHHHHHHHHCCTTSTT
T ss_pred cEEEeCcccccC-CHHHHHHHHHHHHHHhccchhhh
Confidence 477788777776 99999999999999997766544
No 17
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=22.85 E-value=25 Score=28.08 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=17.9
Q ss_pred eeecccHHHHHHHHHHHHhcCC
Q 027984 186 FMGFISYDKALKTLTEALRRFP 207 (216)
Q Consensus 186 FMGFvnY~KA~k~Lq~Al~~~~ 207 (216)
-.+|=+|++|++++++||..-.
T Consensus 101 ~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 101 TEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhhhccHHHHHHHHHHHHHhCC
Confidence 4556799999999999997543
No 18
>3vub_A CCDB; topoisomerase poison; 1.40A {Escherichia coli} SCOP: b.34.6.1 PDB: 1x75_C* 1vub_A 2vub_A 3g7z_A 3hpw_A 4vub_A
Probab=21.59 E-value=1.1e+02 Score=23.14 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=24.1
Q ss_pred EEEEeeeccccccccCCCCCCCCCCceEEEEEecCceeeee
Q 027984 147 YFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM 187 (216)
Q Consensus 147 yYKVvIPL~kik~vnps~n~~~P~eKYIqIvTvD~~eFWFM 187 (216)
...|||||-......+ ++..+.-=++++||.+|-.|
T Consensus 29 ~tRvVvPL~~~~~~~~-----~~~~~L~P~~~i~G~~~vl~ 64 (101)
T 3vub_A 29 GRRMVIPLASARLLSD-----KVSRELYPVVHIGDESWRMM 64 (101)
T ss_dssp TEEEEEEEEESSSSCS-----SSCTTTSCEEEETTEEEEEC
T ss_pred CceEEEECCChhHcCc-----ccCcccceEEEECCEEEEEe
Confidence 3579999987775533 22244444788999988654
Done!