Query 027985
Match_columns 216
No_of_seqs 151 out of 1950
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 04:30:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 7.9E-43 1.7E-47 242.6 21.1 179 9-188 3-182 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 1.6E-40 3.4E-45 230.3 19.3 172 13-185 3-174 (200)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 3.1E-40 6.7E-45 229.0 18.6 171 13-184 20-191 (221)
4 KOG0080 GTPase Rab18, small G 100.0 2.2E-39 4.7E-44 217.7 18.7 203 10-216 6-209 (209)
5 KOG0078 GTP-binding protein SE 100.0 1.2E-38 2.7E-43 224.9 21.9 173 10-183 7-179 (207)
6 KOG0098 GTPase Rab2, small G p 100.0 2.7E-37 5.9E-42 212.7 19.4 172 12-184 3-174 (216)
7 cd04120 Rab12 Rab12 subfamily. 100.0 1.1E-36 2.3E-41 222.8 23.5 164 16-180 1-165 (202)
8 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.1E-36 2.3E-41 224.1 23.1 173 16-189 1-179 (201)
9 KOG0079 GTP-binding protein H- 100.0 5.9E-38 1.3E-42 208.0 13.7 184 10-195 3-187 (198)
10 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.4E-36 3E-41 213.6 20.6 177 9-186 8-184 (222)
11 KOG0394 Ras-related GTPase [Ge 100.0 8.4E-37 1.8E-41 209.9 17.5 173 11-183 5-183 (210)
12 PLN03110 Rab GTPase; Provision 100.0 1.3E-35 2.8E-40 220.2 25.3 172 11-183 8-179 (216)
13 cd04121 Rab40 Rab40 subfamily. 100.0 8.6E-36 1.9E-40 216.1 23.0 166 12-179 3-168 (189)
14 cd04110 Rab35 Rab35 subfamily. 100.0 1.3E-35 2.8E-40 217.9 24.0 197 12-214 3-199 (199)
15 cd04126 Rab20 Rab20 subfamily. 100.0 1.7E-35 3.6E-40 218.8 22.4 188 16-214 1-220 (220)
16 cd04111 Rab39 Rab39 subfamily. 100.0 8E-35 1.7E-39 215.1 24.0 170 14-184 1-172 (211)
17 KOG0093 GTPase Rab3, small G p 100.0 1.3E-35 2.8E-40 196.7 16.6 178 7-185 13-190 (193)
18 KOG0088 GTPase Rab21, small G 100.0 4.8E-36 1E-40 201.2 14.6 177 9-186 7-183 (218)
19 cd04112 Rab26 Rab26 subfamily. 100.0 9.1E-35 2E-39 212.1 21.8 190 16-214 1-191 (191)
20 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.9E-34 6.3E-39 213.3 24.0 168 11-180 9-190 (232)
21 PLN03108 Rab family protein; P 100.0 5.5E-34 1.2E-38 210.7 24.7 172 12-184 3-174 (210)
22 cd04125 RabA_like RabA-like su 100.0 4.7E-34 1E-38 208.0 23.2 164 16-180 1-164 (188)
23 cd04122 Rab14 Rab14 subfamily. 100.0 2.1E-34 4.5E-39 205.8 20.8 164 15-179 2-165 (166)
24 cd04109 Rab28 Rab28 subfamily. 100.0 3.2E-34 7E-39 212.8 22.5 164 16-180 1-168 (215)
25 cd01867 Rab8_Rab10_Rab13_like 100.0 2.8E-34 6.1E-39 205.3 20.6 166 13-179 1-166 (167)
26 cd04118 Rab24 Rab24 subfamily. 100.0 8.8E-34 1.9E-38 207.4 23.6 165 16-181 1-169 (193)
27 cd04133 Rop_like Rop subfamily 100.0 4.8E-34 1E-38 204.8 20.9 160 16-177 2-172 (176)
28 cd04144 Ras2 Ras2 subfamily. 100.0 3.7E-34 8E-39 208.8 20.5 165 17-183 1-168 (190)
29 KOG0091 GTPase Rab39, small G 100.0 6.3E-35 1.4E-39 196.8 14.8 172 11-183 4-178 (213)
30 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 7.2E-34 1.6E-38 205.1 21.1 164 12-177 2-179 (182)
31 PTZ00369 Ras-like protein; Pro 100.0 6.1E-34 1.3E-38 207.4 20.9 165 14-180 4-169 (189)
32 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.7E-33 3.7E-38 208.2 22.2 165 16-182 2-180 (222)
33 cd01875 RhoG RhoG subfamily. 100.0 1.5E-33 3.3E-38 205.5 21.2 163 14-178 2-177 (191)
34 KOG0095 GTPase Rab30, small G 100.0 3.1E-34 6.7E-39 190.8 15.7 171 10-181 2-172 (213)
35 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.6E-33 3.5E-38 201.2 20.7 163 15-178 2-164 (166)
36 cd01865 Rab3 Rab3 subfamily. 100.0 2.6E-33 5.5E-38 200.0 21.7 162 16-178 2-163 (165)
37 cd04131 Rnd Rnd subfamily. Th 100.0 1.9E-33 4.1E-38 202.5 21.0 161 15-177 1-175 (178)
38 cd04117 Rab15 Rab15 subfamily. 100.0 2.2E-33 4.8E-38 199.5 20.4 160 16-176 1-160 (161)
39 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.3E-33 5E-38 201.3 20.6 163 15-179 2-165 (172)
40 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.3E-33 5E-38 202.8 20.3 163 16-179 1-167 (182)
41 cd04127 Rab27A Rab27a subfamil 100.0 3.8E-33 8.3E-38 201.8 21.0 167 13-180 2-179 (180)
42 cd01866 Rab2 Rab2 subfamily. 100.0 5.5E-33 1.2E-37 198.8 21.1 166 13-179 2-167 (168)
43 cd04132 Rho4_like Rho4-like su 100.0 5.9E-33 1.3E-37 202.1 21.6 167 16-184 1-173 (187)
44 cd04119 RJL RJL (RabJ-Like) su 100.0 3.7E-33 8E-38 199.5 20.1 162 16-178 1-167 (168)
45 cd01868 Rab11_like Rab11-like. 100.0 6.6E-33 1.4E-37 197.8 20.8 163 14-177 2-164 (165)
46 cd01864 Rab19 Rab19 subfamily. 100.0 6.7E-33 1.5E-37 197.8 20.4 163 13-176 1-164 (165)
47 PLN03118 Rab family protein; P 100.0 3E-32 6.5E-37 201.8 24.6 172 9-182 8-181 (211)
48 PF00071 Ras: Ras family; Int 100.0 6E-33 1.3E-37 197.5 19.7 161 17-178 1-161 (162)
49 PLN03071 GTP-binding nuclear p 100.0 9.5E-33 2.1E-37 205.1 21.3 165 12-180 10-174 (219)
50 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.7E-32 3.6E-37 196.5 21.0 163 17-179 2-166 (170)
51 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.6E-32 3.6E-37 197.4 21.0 161 15-177 1-174 (175)
52 smart00175 RAB Rab subfamily o 100.0 2.2E-32 4.8E-37 194.8 20.5 163 16-179 1-163 (164)
53 cd00877 Ran Ran (Ras-related n 100.0 2.8E-32 6E-37 194.7 20.8 160 16-179 1-160 (166)
54 cd04134 Rho3 Rho3 subfamily. 100.0 3.8E-32 8.2E-37 198.0 21.7 161 16-178 1-174 (189)
55 cd04113 Rab4 Rab4 subfamily. 100.0 2.2E-32 4.8E-37 194.4 19.8 160 16-176 1-160 (161)
56 cd04136 Rap_like Rap-like subf 100.0 2.3E-32 5.1E-37 194.5 19.3 160 16-177 2-162 (163)
57 KOG0086 GTPase Rab4, small G p 100.0 8.9E-33 1.9E-37 184.5 15.8 181 8-189 2-182 (214)
58 cd04116 Rab9 Rab9 subfamily. 100.0 6.4E-32 1.4E-36 193.7 20.9 163 12-176 2-169 (170)
59 cd04175 Rap1 Rap1 subgroup. T 100.0 4.5E-32 9.7E-37 193.4 19.3 161 16-178 2-163 (164)
60 cd04124 RabL2 RabL2 subfamily. 100.0 8.3E-32 1.8E-36 191.4 20.3 160 16-180 1-160 (161)
61 cd04106 Rab23_lke Rab23-like s 100.0 7.2E-32 1.6E-36 191.9 20.0 159 16-176 1-161 (162)
62 cd01861 Rab6 Rab6 subfamily. 100.0 8.7E-32 1.9E-36 191.3 20.1 160 16-176 1-160 (161)
63 cd01871 Rac1_like Rac1-like su 100.0 9.9E-32 2.1E-36 193.2 20.5 159 16-176 2-173 (174)
64 cd04176 Rap2 Rap2 subgroup. T 100.0 1.1E-31 2.4E-36 191.2 19.6 160 16-177 2-162 (163)
65 smart00173 RAS Ras subfamily o 100.0 1.2E-31 2.6E-36 191.2 19.4 161 16-178 1-162 (164)
66 cd04140 ARHI_like ARHI subfami 100.0 1.6E-31 3.4E-36 190.7 19.8 159 16-176 2-163 (165)
67 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.1E-31 4.5E-36 189.3 19.9 159 16-177 2-161 (162)
68 cd04142 RRP22 RRP22 subfamily. 100.0 1.7E-31 3.8E-36 195.3 19.9 164 16-180 1-176 (198)
69 KOG0097 GTPase Rab14, small G 100.0 1.6E-31 3.5E-36 176.5 17.5 180 1-185 1-180 (215)
70 cd01860 Rab5_related Rab5-rela 100.0 3.6E-31 7.7E-36 188.5 20.7 162 15-177 1-162 (163)
71 cd04145 M_R_Ras_like M-Ras/R-R 100.0 4.4E-31 9.6E-36 188.1 20.1 161 15-177 2-163 (164)
72 cd04115 Rab33B_Rab33A Rab33B/R 100.0 6.4E-31 1.4E-35 188.5 20.6 162 15-177 2-168 (170)
73 KOG0081 GTPase Rab27, small G 100.0 4.8E-33 1E-37 187.0 8.6 180 11-191 5-194 (219)
74 smart00176 RAN Ran (Ras-relate 100.0 4.7E-31 1E-35 192.8 19.7 156 21-180 1-156 (200)
75 cd04123 Rab21 Rab21 subfamily. 100.0 1.1E-30 2.4E-35 185.5 20.7 161 16-177 1-161 (162)
76 cd01862 Rab7 Rab7 subfamily. 100.0 1E-30 2.3E-35 187.6 20.7 164 16-180 1-169 (172)
77 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.2E-30 2.5E-35 186.0 20.2 160 16-177 1-163 (164)
78 cd01873 RhoBTB RhoBTB subfamil 100.0 1E-30 2.2E-35 190.6 20.2 159 15-176 2-194 (195)
79 smart00174 RHO Rho (Ras homolo 100.0 1E-30 2.2E-35 188.1 19.2 159 18-178 1-172 (174)
80 cd01863 Rab18 Rab18 subfamily. 100.0 2.5E-30 5.5E-35 183.7 20.4 159 16-176 1-160 (161)
81 cd04103 Centaurin_gamma Centau 100.0 1.4E-30 3E-35 184.3 18.8 154 16-176 1-157 (158)
82 cd04143 Rhes_like Rhes_like su 100.0 2.2E-30 4.7E-35 195.1 20.5 161 16-178 1-171 (247)
83 cd04135 Tc10 TC10 subfamily. 100.0 3.9E-30 8.4E-35 185.1 20.9 160 16-177 1-173 (174)
84 cd04114 Rab30 Rab30 subfamily. 100.0 6.7E-30 1.5E-34 183.0 21.8 164 13-177 5-168 (169)
85 cd01892 Miro2 Miro2 subfamily. 100.0 1.8E-30 3.9E-35 185.9 18.8 163 13-178 2-166 (169)
86 cd04130 Wrch_1 Wrch-1 subfamil 100.0 5.3E-30 1.1E-34 184.2 21.0 158 16-175 1-171 (173)
87 cd00154 Rab Rab family. Rab G 100.0 4.2E-30 9.1E-35 181.7 19.2 158 16-174 1-158 (159)
88 cd04177 RSR1 RSR1 subgroup. R 100.0 7E-30 1.5E-34 182.8 20.4 161 16-178 2-164 (168)
89 cd04148 RGK RGK subfamily. Th 100.0 6.8E-30 1.5E-34 190.1 20.3 163 16-181 1-166 (221)
90 cd04146 RERG_RasL11_like RERG/ 100.0 3E-30 6.4E-35 184.2 17.6 160 17-178 1-164 (165)
91 cd04147 Ras_dva Ras-dva subfam 100.0 1.4E-29 3.1E-34 185.7 19.4 161 17-178 1-163 (198)
92 cd04139 RalA_RalB RalA/RalB su 100.0 3E-29 6.6E-34 178.5 19.7 161 16-178 1-162 (164)
93 cd00876 Ras Ras family. The R 100.0 3E-29 6.5E-34 177.8 18.0 158 17-176 1-159 (160)
94 cd01870 RhoA_like RhoA-like su 100.0 9.5E-29 2.1E-33 178.0 20.8 160 16-177 2-174 (175)
95 cd04129 Rho2 Rho2 subfamily. 100.0 1.1E-28 2.3E-33 179.5 20.7 161 16-178 2-173 (187)
96 cd04137 RheB Rheb (Ras Homolog 100.0 1.8E-28 3.9E-33 177.4 20.2 163 16-180 2-165 (180)
97 cd04149 Arf6 Arf6 subfamily. 100.0 3.3E-29 7.1E-34 179.1 15.5 154 14-175 8-167 (168)
98 cd00157 Rho Rho (Ras homology) 100.0 2.9E-28 6.3E-33 174.7 20.4 158 16-175 1-170 (171)
99 cd04158 ARD1 ARD1 subfamily. 100.0 9.1E-29 2E-33 177.1 17.1 156 17-180 1-163 (169)
100 PLN00223 ADP-ribosylation fact 100.0 1.2E-28 2.7E-33 178.1 17.5 159 13-179 15-179 (181)
101 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.9E-28 4.1E-33 177.6 18.3 164 15-182 3-174 (183)
102 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.4E-30 3E-35 170.3 6.2 165 19-184 1-166 (192)
103 smart00177 ARF ARF-like small 100.0 4.3E-29 9.2E-34 179.7 13.9 156 14-177 12-173 (175)
104 cd04154 Arl2 Arl2 subfamily. 100.0 2E-28 4.2E-33 176.1 16.3 157 11-175 10-172 (173)
105 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.8E-28 6.1E-33 172.8 16.8 152 16-175 1-158 (159)
106 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.8E-29 6.1E-34 178.8 11.3 153 17-175 1-163 (164)
107 KOG0395 Ras-related GTPase [Ge 100.0 6.6E-28 1.4E-32 174.9 18.2 163 15-179 3-166 (196)
108 PTZ00132 GTP-binding nuclear p 100.0 2.1E-27 4.5E-32 176.4 21.1 166 10-179 4-169 (215)
109 cd01893 Miro1 Miro1 subfamily. 100.0 1.2E-27 2.5E-32 170.9 18.3 160 16-178 1-164 (166)
110 KOG4252 GTP-binding protein [S 100.0 4.4E-30 9.5E-35 176.1 5.4 172 11-184 16-187 (246)
111 PTZ00133 ADP-ribosylation fact 100.0 9.3E-28 2E-32 173.7 17.9 157 15-179 17-179 (182)
112 cd04157 Arl6 Arl6 subfamily. 100.0 2.3E-28 4.9E-33 173.8 13.0 152 17-175 1-161 (162)
113 KOG0393 Ras-related small GTPa 100.0 4.1E-28 8.9E-33 172.3 13.4 165 13-179 2-180 (198)
114 PTZ00099 rab6; Provisional 100.0 1.1E-26 2.3E-31 166.8 18.7 145 38-183 3-147 (176)
115 cd04102 RabL3 RabL3 (Rab-like3 100.0 6.3E-27 1.4E-31 170.9 17.4 148 16-164 1-176 (202)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 5.2E-27 1.1E-31 168.8 16.6 154 14-175 14-173 (174)
117 cd04156 ARLTS1 ARLTS1 subfamil 100.0 2.4E-27 5.1E-32 168.3 12.7 152 17-175 1-159 (160)
118 cd04161 Arl2l1_Arl13_like Arl2 100.0 3.2E-27 6.9E-32 168.8 13.4 154 17-175 1-166 (167)
119 cd00879 Sar1 Sar1 subfamily. 100.0 1E-26 2.3E-31 169.6 16.1 155 14-176 18-189 (190)
120 PF00025 Arf: ADP-ribosylation 99.9 3.1E-26 6.7E-31 164.6 18.1 158 12-177 11-175 (175)
121 cd04151 Arl1 Arl1 subfamily. 99.9 3E-27 6.5E-32 167.5 12.4 151 17-175 1-157 (158)
122 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.2E-26 2.6E-31 165.8 15.5 152 17-175 1-166 (167)
123 KOG0073 GTP-binding ADP-ribosy 99.9 1.7E-26 3.6E-31 156.2 15.0 167 10-181 11-181 (185)
124 PLN00023 GTP-binding protein; 99.9 4.1E-25 8.9E-30 169.0 21.4 143 11-153 17-189 (334)
125 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3.5E-26 7.5E-31 162.0 14.6 151 17-175 1-157 (158)
126 smart00178 SAR Sar1p-like memb 99.9 7.2E-26 1.6E-30 164.2 16.2 156 13-176 15-183 (184)
127 PRK12299 obgE GTPase CgtA; Rev 99.9 8E-26 1.7E-30 176.5 17.5 164 15-180 158-330 (335)
128 cd01897 NOG NOG1 is a nucleola 99.9 8.2E-26 1.8E-30 161.6 15.7 155 17-177 2-167 (168)
129 cd01898 Obg Obg subfamily. Th 99.9 1.3E-25 2.8E-30 160.8 15.3 157 17-176 2-169 (170)
130 cd01878 HflX HflX subfamily. 99.9 1.2E-25 2.7E-30 165.6 13.5 158 12-177 38-204 (204)
131 cd04159 Arl10_like Arl10-like 99.9 1.1E-25 2.4E-30 159.0 12.7 152 17-175 1-158 (159)
132 TIGR00231 small_GTP small GTP- 99.9 1.2E-24 2.5E-29 153.5 17.4 158 15-174 1-160 (161)
133 cd04155 Arl3 Arl3 subfamily. 99.9 9.1E-25 2E-29 157.0 16.9 157 8-175 7-172 (173)
134 cd01890 LepA LepA subfamily. 99.9 3.7E-25 8.1E-30 159.8 14.8 154 17-177 2-176 (179)
135 cd04171 SelB SelB subfamily. 99.9 1.5E-24 3.2E-29 154.3 14.5 153 16-175 1-163 (164)
136 TIGR03156 GTP_HflX GTP-binding 99.9 2E-24 4.4E-29 170.0 15.7 159 9-176 183-350 (351)
137 TIGR02729 Obg_CgtA Obg family 99.9 2.7E-24 5.9E-29 167.9 16.2 160 15-177 157-328 (329)
138 COG1100 GTPase SAR1 and relate 99.9 2.2E-23 4.8E-28 155.3 20.1 169 15-183 5-190 (219)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.6E-24 5.6E-29 153.8 14.2 158 17-178 2-166 (168)
140 KOG0075 GTP-binding ADP-ribosy 99.9 2.7E-25 5.8E-30 147.7 7.4 161 14-178 19-182 (186)
141 PF02421 FeoB_N: Ferrous iron 99.9 1.2E-24 2.6E-29 151.0 11.0 148 16-173 1-156 (156)
142 cd01879 FeoB Ferrous iron tran 99.9 1.2E-23 2.6E-28 148.8 15.6 148 20-177 1-156 (158)
143 KOG0070 GTP-binding ADP-ribosy 99.9 4.2E-24 9E-29 148.3 11.8 160 12-179 14-179 (181)
144 cd01891 TypA_BipA TypA (tyrosi 99.9 3.3E-24 7.1E-29 156.8 11.8 150 16-169 3-173 (194)
145 TIGR02528 EutP ethanolamine ut 99.9 3.4E-24 7.4E-29 149.1 11.3 134 17-174 2-141 (142)
146 cd00882 Ras_like_GTPase Ras-li 99.9 3E-23 6.5E-28 145.1 15.9 154 20-174 1-156 (157)
147 TIGR00436 era GTP-binding prot 99.9 9.1E-24 2E-28 161.8 13.7 155 17-180 2-166 (270)
148 PRK12297 obgE GTPase CgtA; Rev 99.9 8.2E-23 1.8E-27 163.5 18.6 158 17-180 160-329 (424)
149 PRK04213 GTP-binding protein; 99.9 4.2E-24 9E-29 157.2 9.6 152 14-179 8-193 (201)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.9 9.6E-23 2.1E-27 164.8 17.9 155 12-181 200-363 (442)
151 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.1E-22 2.3E-27 143.6 15.5 146 16-177 2-156 (157)
152 cd01881 Obg_like The Obg-like 99.9 3.1E-23 6.8E-28 149.2 12.2 154 20-176 1-175 (176)
153 PRK12296 obgE GTPase CgtA; Rev 99.9 9.7E-23 2.1E-27 165.0 16.2 164 15-182 159-344 (500)
154 PRK15494 era GTPase Era; Provi 99.9 1.6E-22 3.5E-27 159.0 16.6 162 13-185 50-223 (339)
155 PRK03003 GTP-binding protein D 99.9 8.9E-23 1.9E-27 167.4 14.8 163 13-181 209-385 (472)
156 PRK05291 trmE tRNA modificatio 99.9 7.2E-23 1.6E-27 166.4 14.1 149 14-179 214-371 (449)
157 PRK11058 GTPase HflX; Provisio 99.9 1.6E-22 3.4E-27 162.8 15.5 160 13-179 195-363 (426)
158 PRK12298 obgE GTPase CgtA; Rev 99.9 3.1E-22 6.8E-27 159.3 16.5 162 17-181 161-336 (390)
159 cd01889 SelB_euk SelB subfamil 99.9 9.4E-23 2E-27 148.9 12.4 159 16-178 1-186 (192)
160 cd01894 EngA1 EngA1 subfamily. 99.9 1.8E-22 3.8E-27 142.6 13.1 146 19-176 1-156 (157)
161 cd00881 GTP_translation_factor 99.9 2.3E-22 5.1E-27 146.2 13.9 155 17-177 1-186 (189)
162 cd01895 EngA2 EngA2 subfamily. 99.9 1E-21 2.2E-26 140.8 15.8 156 15-176 2-173 (174)
163 PF08477 Miro: Miro-like prote 99.9 2.6E-22 5.6E-27 135.4 11.5 114 17-131 1-119 (119)
164 KOG4423 GTP-binding protein-li 99.9 1.2E-24 2.6E-29 150.3 -0.7 185 9-193 19-209 (229)
165 PRK03003 GTP-binding protein D 99.9 6.6E-22 1.4E-26 162.3 15.2 154 14-179 37-200 (472)
166 KOG1673 Ras GTPases [General f 99.9 5.4E-22 1.2E-26 133.3 11.3 171 12-183 17-191 (205)
167 TIGR03594 GTPase_EngA ribosome 99.9 3.5E-21 7.7E-26 156.9 18.4 162 12-180 169-346 (429)
168 TIGR00487 IF-2 translation ini 99.9 2.2E-21 4.7E-26 161.4 17.1 153 14-175 86-247 (587)
169 PRK15467 ethanolamine utilizat 99.9 1.1E-21 2.4E-26 138.6 12.9 142 17-181 3-150 (158)
170 TIGR01393 lepA GTP-binding pro 99.9 8.7E-22 1.9E-26 164.5 13.7 157 15-178 3-180 (595)
171 cd04163 Era Era subfamily. Er 99.9 4.8E-21 1E-25 136.3 14.3 156 15-176 3-167 (168)
172 PF00009 GTP_EFTU: Elongation 99.9 4.8E-22 1E-26 144.6 9.2 159 14-178 2-187 (188)
173 TIGR00475 selB selenocysteine- 99.9 3.7E-21 8E-26 160.6 15.7 155 16-179 1-167 (581)
174 PRK05306 infB translation init 99.9 3.1E-21 6.7E-26 164.2 15.2 159 12-176 287-450 (787)
175 cd01888 eIF2_gamma eIF2-gamma 99.9 2E-21 4.3E-26 142.9 12.1 160 16-177 1-198 (203)
176 TIGR03598 GTPase_YsxC ribosome 99.9 2.4E-21 5.1E-26 139.9 11.5 150 11-167 14-179 (179)
177 PRK00454 engB GTP-binding prot 99.9 6.9E-21 1.5E-25 139.5 14.1 161 11-178 20-194 (196)
178 TIGR00437 feoB ferrous iron tr 99.9 8.7E-21 1.9E-25 158.6 15.6 146 22-177 1-154 (591)
179 CHL00189 infB translation init 99.9 4.7E-21 1E-25 161.8 14.0 161 13-177 242-409 (742)
180 COG1159 Era GTPase [General fu 99.9 3.2E-21 6.9E-26 144.0 11.4 163 14-182 5-176 (298)
181 PRK00089 era GTPase Era; Revie 99.9 5.2E-21 1.1E-25 148.4 13.1 159 15-179 5-172 (292)
182 KOG0076 GTP-binding ADP-ribosy 99.9 1.2E-21 2.6E-26 134.1 7.4 162 15-180 17-189 (197)
183 PRK00093 GTP-binding protein D 99.9 2.2E-20 4.8E-25 152.5 15.6 146 16-175 2-159 (435)
184 PRK09554 feoB ferrous iron tra 99.9 5.4E-20 1.2E-24 157.3 18.4 153 15-177 3-167 (772)
185 PRK00093 GTP-binding protein D 99.9 3.1E-20 6.7E-25 151.6 16.3 160 13-180 171-346 (435)
186 cd04105 SR_beta Signal recogni 99.9 5.7E-20 1.2E-24 135.0 15.7 115 17-134 2-123 (203)
187 cd00880 Era_like Era (E. coli 99.8 2.3E-20 5E-25 131.7 12.9 152 20-176 1-162 (163)
188 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 9.6E-21 2.1E-25 131.5 10.2 163 13-179 8-170 (216)
189 PRK05433 GTP-binding protein L 99.8 1.8E-20 4E-25 156.7 13.7 159 13-178 5-184 (600)
190 KOG3883 Ras family small GTPas 99.8 1.5E-19 3.3E-24 121.3 15.2 166 15-182 9-179 (198)
191 TIGR03594 GTPase_EngA ribosome 99.8 4.6E-20 9.9E-25 150.4 15.6 151 17-179 1-161 (429)
192 PRK09518 bifunctional cytidyla 99.8 2.2E-20 4.8E-25 159.9 14.3 158 14-180 449-623 (712)
193 KOG0071 GTP-binding ADP-ribosy 99.8 2.3E-20 5E-25 123.4 11.1 157 14-178 16-178 (180)
194 COG0486 ThdF Predicted GTPase 99.8 4.5E-20 9.7E-25 145.5 14.3 161 7-180 209-378 (454)
195 cd01896 DRG The developmentall 99.8 1.1E-19 2.4E-24 136.0 15.6 151 17-177 2-225 (233)
196 COG2229 Predicted GTPase [Gene 99.8 3.7E-19 8.1E-24 123.5 15.7 158 12-176 7-176 (187)
197 PRK09518 bifunctional cytidyla 99.8 1.8E-19 4E-24 154.3 17.3 156 12-179 272-437 (712)
198 KOG1423 Ras-like GTPase ERA [C 99.8 6.4E-20 1.4E-24 136.8 12.4 184 3-190 60-283 (379)
199 TIGR00491 aIF-2 translation in 99.8 1.5E-19 3.3E-24 150.3 15.6 158 16-180 5-218 (590)
200 TIGR00483 EF-1_alpha translati 99.8 7.8E-20 1.7E-24 148.5 13.5 156 12-171 4-200 (426)
201 PRK12317 elongation factor 1-a 99.8 1.3E-19 2.9E-24 147.2 13.7 154 14-171 5-198 (425)
202 COG1160 Predicted GTPases [Gen 99.8 7.9E-20 1.7E-24 143.8 11.7 149 16-178 4-165 (444)
203 COG2262 HflX GTPases [General 99.8 3.5E-19 7.6E-24 138.2 14.2 169 5-181 182-359 (411)
204 TIGR01394 TypA_BipA GTP-bindin 99.8 2.9E-19 6.3E-24 149.2 13.8 156 17-178 3-191 (594)
205 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.8E-19 4E-24 133.0 11.3 148 17-169 1-185 (208)
206 COG1160 Predicted GTPases [Gen 99.8 1.2E-18 2.7E-23 137.1 16.4 162 14-181 177-354 (444)
207 PRK10218 GTP-binding protein; 99.8 9E-19 2E-23 146.1 16.1 161 14-178 4-195 (607)
208 TIGR03680 eif2g_arch translati 99.8 2.5E-19 5.5E-24 144.4 11.9 163 13-177 2-195 (406)
209 PRK10512 selenocysteinyl-tRNA- 99.8 8.6E-19 1.9E-23 147.0 15.1 153 17-177 2-165 (614)
210 PF10662 PduV-EutP: Ethanolami 99.8 5.7E-19 1.2E-23 120.0 11.0 136 16-174 2-142 (143)
211 KOG0074 GTP-binding ADP-ribosy 99.8 2.5E-19 5.4E-24 118.7 8.6 154 13-176 15-177 (185)
212 cd01884 EF_Tu EF-Tu subfamily. 99.8 2E-18 4.3E-23 125.7 14.0 147 15-167 2-172 (195)
213 KOG1489 Predicted GTP-binding 99.8 1.6E-18 3.4E-23 130.0 13.1 156 16-176 197-365 (366)
214 cd01883 EF1_alpha Eukaryotic e 99.8 3.6E-19 7.8E-24 132.4 9.6 147 17-167 1-194 (219)
215 PRK04000 translation initiatio 99.8 9.7E-19 2.1E-23 141.0 12.6 165 11-177 5-200 (411)
216 cd01876 YihA_EngB The YihA (En 99.8 2.3E-18 5E-23 122.7 12.2 151 17-176 1-169 (170)
217 cd04168 TetM_like Tet(M)-like 99.8 5.7E-18 1.2E-22 127.0 14.8 112 17-134 1-130 (237)
218 PRK04004 translation initiatio 99.8 4.2E-18 9.2E-23 142.2 15.5 158 15-179 6-219 (586)
219 KOG0072 GTP-binding ADP-ribosy 99.8 1.6E-19 3.6E-24 119.9 5.5 164 12-180 15-181 (182)
220 COG1084 Predicted GTPase [Gene 99.8 9.4E-18 2E-22 126.7 14.6 163 12-181 165-339 (346)
221 COG0218 Predicted GTPase [Gene 99.8 2.2E-17 4.8E-22 117.2 15.3 159 10-179 19-198 (200)
222 COG0370 FeoB Fe2+ transport sy 99.8 8.3E-18 1.8E-22 138.1 14.0 155 15-179 3-165 (653)
223 cd04167 Snu114p Snu114p subfam 99.8 6.3E-18 1.4E-22 125.3 11.5 147 17-167 2-192 (213)
224 PRK12736 elongation factor Tu; 99.8 1.5E-17 3.3E-22 133.6 14.3 160 12-177 9-200 (394)
225 cd04165 GTPBP1_like GTPBP1-lik 99.8 4.3E-17 9.3E-22 121.2 15.4 153 17-175 1-220 (224)
226 COG1163 DRG Predicted GTPase [ 99.8 7.1E-17 1.5E-21 121.7 15.9 156 13-178 61-289 (365)
227 PRK12735 elongation factor Tu; 99.8 2.9E-17 6.4E-22 132.1 14.1 160 11-176 8-201 (396)
228 COG0536 Obg Predicted GTPase [ 99.7 5.5E-17 1.2E-21 123.1 13.6 164 17-182 161-337 (369)
229 COG0532 InfB Translation initi 99.7 9.9E-17 2.1E-21 128.4 15.4 167 15-185 5-177 (509)
230 TIGR00485 EF-Tu translation el 99.7 5.2E-17 1.1E-21 130.7 13.6 147 12-164 9-179 (394)
231 CHL00071 tufA elongation facto 99.7 6.2E-17 1.4E-21 130.7 14.0 149 12-166 9-181 (409)
232 KOG1707 Predicted Ras related/ 99.7 9.1E-18 2E-22 134.8 8.7 164 13-178 7-175 (625)
233 PLN00043 elongation factor 1-a 99.7 3.6E-17 7.7E-22 132.9 12.1 150 13-168 5-203 (447)
234 cd04104 p47_IIGP_like p47 (47- 99.7 1.8E-16 3.9E-21 116.0 14.5 162 15-184 1-190 (197)
235 KOG0462 Elongation factor-type 99.7 8.2E-17 1.8E-21 128.6 13.3 162 13-178 58-235 (650)
236 PRK05124 cysN sulfate adenylyl 99.7 3.9E-17 8.6E-22 133.7 11.7 154 12-170 24-217 (474)
237 PLN03126 Elongation factor Tu; 99.7 1.3E-16 2.8E-21 130.2 13.8 149 12-166 78-250 (478)
238 TIGR02034 CysN sulfate adenyly 99.7 5.7E-17 1.2E-21 130.7 11.5 149 16-169 1-188 (406)
239 cd01886 EF-G Elongation factor 99.7 8.9E-17 1.9E-21 122.6 11.4 112 17-134 1-130 (270)
240 PTZ00141 elongation factor 1- 99.7 1.2E-16 2.6E-21 129.9 12.8 151 13-168 5-203 (446)
241 PRK00049 elongation factor Tu; 99.7 3.8E-16 8.3E-21 125.6 15.2 148 12-165 9-180 (396)
242 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.1E-16 2.5E-21 118.4 10.7 164 17-183 1-181 (232)
243 cd01885 EF2 EF2 (for archaea a 99.7 1.6E-16 3.4E-21 117.7 11.4 114 17-134 2-139 (222)
244 cd01850 CDC_Septin CDC/Septin. 99.7 2.2E-16 4.7E-21 120.9 12.5 143 14-161 3-185 (276)
245 COG0481 LepA Membrane GTPase L 99.7 2.7E-16 5.8E-21 123.9 12.5 159 13-178 7-186 (603)
246 cd04169 RF3 RF3 subfamily. Pe 99.7 5.4E-16 1.2E-20 118.2 13.9 113 16-134 3-137 (267)
247 PF01926 MMR_HSR1: 50S ribosom 99.7 3.6E-16 7.8E-21 104.9 11.4 106 17-129 1-116 (116)
248 cd01899 Ygr210 Ygr210 subfamil 99.7 1.2E-15 2.6E-20 118.6 14.9 81 18-98 1-110 (318)
249 PLN03127 Elongation factor Tu; 99.7 1.5E-15 3.3E-20 123.3 15.1 160 12-177 58-251 (447)
250 PTZ00327 eukaryotic translatio 99.7 2.7E-16 5.8E-21 127.6 10.5 166 11-178 30-233 (460)
251 PRK05506 bifunctional sulfate 99.7 5.9E-16 1.3E-20 131.4 12.5 152 12-168 21-211 (632)
252 PRK00741 prfC peptide chain re 99.7 2.7E-15 5.8E-20 124.0 15.7 115 13-133 8-144 (526)
253 KOG0077 Vesicle coat complex C 99.7 1.8E-16 4E-21 108.0 7.2 153 16-176 21-191 (193)
254 PRK13351 elongation factor G; 99.7 5.7E-16 1.2E-20 132.9 11.6 116 13-134 6-139 (687)
255 KOG1191 Mitochondrial GTPase [ 99.7 8E-16 1.7E-20 121.7 10.9 166 12-180 265-452 (531)
256 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 7.1E-15 1.5E-19 107.6 14.7 160 16-179 1-185 (196)
257 KOG1145 Mitochondrial translat 99.7 4.7E-15 1E-19 118.7 14.5 175 14-197 152-335 (683)
258 cd04170 EF-G_bact Elongation f 99.6 5.8E-15 1.3E-19 113.2 14.2 141 17-166 1-161 (268)
259 COG5256 TEF1 Translation elong 99.6 3.6E-15 7.8E-20 116.1 12.0 153 13-168 5-201 (428)
260 COG3596 Predicted GTPase [Gene 99.6 8.1E-16 1.8E-20 113.8 7.9 165 12-180 36-224 (296)
261 TIGR00503 prfC peptide chain r 99.6 4.8E-15 1E-19 122.6 13.2 116 12-133 8-145 (527)
262 KOG1490 GTP-binding protein CR 99.6 1.6E-15 3.5E-20 120.2 9.1 172 9-185 162-348 (620)
263 PF09439 SRPRB: Signal recogni 99.6 1.2E-15 2.7E-20 108.3 7.4 115 16-134 4-126 (181)
264 PRK12739 elongation factor G; 99.6 7.2E-15 1.6E-19 125.9 12.9 117 12-134 5-139 (691)
265 TIGR00484 EF-G translation elo 99.6 8.8E-15 1.9E-19 125.4 12.8 117 12-134 7-141 (689)
266 PRK09602 translation-associate 99.6 4.6E-14 9.9E-19 112.9 15.4 83 16-98 2-113 (396)
267 PRK00007 elongation factor G; 99.6 3.4E-14 7.4E-19 121.7 13.6 116 12-133 7-140 (693)
268 PRK09866 hypothetical protein; 99.6 1.6E-13 3.4E-18 113.1 16.8 108 65-175 231-350 (741)
269 KOG0090 Signal recognition par 99.6 6.9E-14 1.5E-18 99.6 11.5 155 16-176 39-237 (238)
270 PRK12740 elongation factor G; 99.6 2.4E-14 5.3E-19 122.6 11.1 108 21-134 1-126 (668)
271 COG2895 CysN GTPases - Sulfate 99.6 4.6E-14 9.9E-19 107.7 11.1 149 14-167 5-192 (431)
272 COG1217 TypA Predicted membran 99.5 1.3E-13 2.9E-18 108.6 12.4 159 15-179 5-196 (603)
273 KOG1532 GTPase XAB1, interacts 99.5 1.6E-13 3.5E-18 101.5 11.7 174 10-183 14-269 (366)
274 PTZ00258 GTP-binding protein; 99.5 1.9E-13 4.1E-18 108.4 12.8 87 12-98 18-126 (390)
275 COG4917 EutP Ethanolamine util 99.5 4.5E-14 9.7E-19 92.0 7.5 138 16-176 2-144 (148)
276 KOG3905 Dynein light intermedi 99.5 3.8E-13 8.2E-18 101.7 12.7 167 11-180 48-292 (473)
277 cd01853 Toc34_like Toc34-like 99.5 8.4E-13 1.8E-17 99.5 14.0 121 10-133 26-162 (249)
278 PRK14845 translation initiatio 99.5 5.8E-13 1.2E-17 116.7 14.7 146 27-179 473-674 (1049)
279 cd00066 G-alpha G protein alph 99.5 1.4E-12 3E-17 102.1 15.2 125 56-182 155-315 (317)
280 TIGR00490 aEF-2 translation el 99.5 1.8E-13 3.8E-18 117.7 10.8 120 11-134 15-152 (720)
281 PF05783 DLIC: Dynein light in 99.5 1.7E-12 3.8E-17 105.4 14.2 166 14-182 24-268 (472)
282 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.9E-12 4.2E-17 99.1 13.5 124 9-134 32-167 (313)
283 smart00275 G_alpha G protein a 99.5 2.4E-12 5.2E-17 101.5 14.3 130 52-183 174-339 (342)
284 KOG1486 GTP-binding protein DR 99.5 6.9E-12 1.5E-16 91.9 15.3 154 15-178 62-288 (364)
285 PRK07560 elongation factor EF- 99.5 6.3E-13 1.4E-17 114.6 11.5 120 11-134 16-153 (731)
286 TIGR00101 ureG urease accessor 99.4 2.6E-12 5.7E-17 93.9 12.5 100 64-177 92-195 (199)
287 PRK09601 GTP-binding protein Y 99.4 2.4E-12 5.2E-17 101.1 13.0 83 16-98 3-107 (364)
288 PF04548 AIG1: AIG1 family; I 99.4 2.7E-12 5.8E-17 95.0 11.6 162 16-181 1-189 (212)
289 PRK13768 GTPase; Provisional 99.4 9.2E-13 2E-17 99.9 8.3 114 65-178 98-247 (253)
290 TIGR00073 hypB hydrogenase acc 99.4 1.9E-12 4.1E-17 95.6 9.8 158 7-176 14-205 (207)
291 PLN00116 translation elongatio 99.4 1.9E-12 4.1E-17 113.1 11.2 120 10-133 14-163 (843)
292 TIGR00157 ribosome small subun 99.4 1.8E-12 3.8E-17 97.8 9.6 95 75-174 24-119 (245)
293 KOG1707 Predicted Ras related/ 99.4 2.2E-11 4.9E-16 98.6 15.4 162 11-178 421-583 (625)
294 PF05049 IIGP: Interferon-indu 99.4 8.2E-13 1.8E-17 103.7 6.5 165 13-184 33-224 (376)
295 PRK09435 membrane ATPase/prote 99.4 1.8E-11 3.9E-16 95.5 13.9 104 64-178 149-260 (332)
296 KOG0458 Elongation factor 1 al 99.4 1.2E-11 2.6E-16 100.1 12.9 153 11-167 173-371 (603)
297 PF03029 ATP_bind_1: Conserved 99.4 1.4E-12 3.1E-17 97.7 7.1 113 65-177 92-236 (238)
298 PTZ00416 elongation factor 2; 99.4 4.7E-12 1E-16 110.4 11.3 118 12-133 16-157 (836)
299 smart00010 small_GTPase Small 99.4 9.9E-12 2.1E-16 84.0 10.5 114 16-167 1-115 (124)
300 TIGR02836 spore_IV_A stage IV 99.4 4.5E-11 9.8E-16 94.2 15.3 153 13-171 15-230 (492)
301 COG5257 GCD11 Translation init 99.4 1.2E-12 2.6E-17 98.9 6.1 169 13-183 8-207 (415)
302 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.8E-11 4E-16 91.3 12.5 142 12-165 36-183 (225)
303 KOG1144 Translation initiation 99.4 8.4E-12 1.8E-16 103.4 11.2 164 15-185 475-694 (1064)
304 COG0012 Predicted GTPase, prob 99.4 2.2E-11 4.8E-16 94.5 12.8 85 15-99 2-109 (372)
305 KOG0461 Selenocysteine-specifi 99.3 2.5E-11 5.5E-16 92.7 12.5 163 13-179 5-194 (522)
306 cd01900 YchF YchF subfamily. 99.3 6.3E-12 1.4E-16 95.7 9.4 81 18-98 1-103 (274)
307 COG0378 HypB Ni2+-binding GTPa 99.3 9.2E-12 2E-16 88.2 9.5 148 15-177 13-200 (202)
308 KOG3886 GTP-binding protein [S 99.3 3.7E-12 7.9E-17 92.0 7.3 146 15-162 4-163 (295)
309 PF00735 Septin: Septin; Inte 99.3 1.4E-11 3E-16 94.5 10.5 141 14-159 3-182 (281)
310 PF00350 Dynamin_N: Dynamin fa 99.3 2.2E-11 4.8E-16 86.9 9.7 63 65-130 102-168 (168)
311 COG3276 SelB Selenocysteine-sp 99.3 5.1E-11 1.1E-15 93.9 11.5 152 17-178 2-162 (447)
312 KOG0082 G-protein alpha subuni 99.3 2.6E-10 5.7E-15 88.7 15.1 133 50-184 183-350 (354)
313 KOG0410 Predicted GTP binding 99.3 6.2E-12 1.3E-16 95.2 5.1 157 9-178 172-341 (410)
314 COG0480 FusA Translation elong 99.2 9.3E-11 2E-15 99.4 11.2 130 12-146 7-154 (697)
315 TIGR00993 3a0901s04IAP86 chlor 99.2 2.4E-10 5.1E-15 95.0 12.4 122 11-134 114-250 (763)
316 TIGR00750 lao LAO/AO transport 99.2 1.6E-10 3.5E-15 89.9 10.3 104 64-178 127-238 (300)
317 COG5019 CDC3 Septin family pro 99.2 3E-10 6.5E-15 87.8 10.9 118 11-133 19-175 (373)
318 smart00053 DYNc Dynamin, GTPas 99.1 5.4E-10 1.2E-14 83.5 10.4 68 64-134 125-206 (240)
319 PRK10463 hydrogenase nickel in 99.1 2.6E-10 5.5E-15 87.0 8.5 55 121-176 231-287 (290)
320 KOG2655 Septin family protein 99.1 1E-09 2.2E-14 85.5 11.3 147 10-161 16-200 (366)
321 KOG1547 Septin CDC10 and relat 99.1 8.2E-10 1.8E-14 80.6 9.0 147 12-163 43-228 (336)
322 KOG0468 U5 snRNP-specific prot 99.1 8.6E-10 1.9E-14 90.9 9.8 119 10-132 123-261 (971)
323 KOG1954 Endocytosis/signaling 99.1 1E-09 2.2E-14 84.9 8.9 127 3-134 46-225 (532)
324 COG1703 ArgK Putative periplas 99.1 5.8E-10 1.3E-14 84.1 7.1 106 64-181 144-257 (323)
325 KOG1487 GTP-binding protein DR 99.0 1.6E-09 3.5E-14 79.9 8.8 154 16-179 60-282 (358)
326 PF03308 ArgK: ArgK protein; 99.0 3.1E-10 6.8E-15 84.3 4.7 154 14-180 28-232 (266)
327 cd01855 YqeH YqeH. YqeH is an 99.0 2.7E-09 5.8E-14 77.7 8.7 94 77-178 24-125 (190)
328 PRK12289 GTPase RsgA; Reviewed 99.0 5.8E-09 1.2E-13 82.5 11.1 91 79-175 81-172 (352)
329 COG4108 PrfC Peptide chain rel 99.0 7.2E-09 1.6E-13 81.8 11.3 128 17-153 14-163 (528)
330 COG0050 TufB GTPases - transla 99.0 5.2E-09 1.1E-13 78.7 10.0 139 14-161 11-176 (394)
331 PRK12288 GTPase RsgA; Reviewed 99.0 3.3E-09 7.1E-14 83.8 9.5 88 85-175 118-205 (347)
332 cd01854 YjeQ_engC YjeQ/EngC. 99.0 3.6E-09 7.7E-14 81.9 8.9 88 82-175 73-161 (287)
333 cd01859 MJ1464 MJ1464. This f 99.0 2.3E-09 5E-14 75.5 7.0 94 78-178 3-96 (156)
334 KOG0705 GTPase-activating prot 99.0 2.9E-09 6.4E-14 86.0 8.0 159 15-180 30-191 (749)
335 COG5258 GTPBP1 GTPase [General 99.0 7.6E-09 1.7E-13 80.5 9.9 163 9-175 111-336 (527)
336 PF00503 G-alpha: G-protein al 98.9 2.4E-08 5.1E-13 80.7 12.6 126 50-177 223-389 (389)
337 PRK00098 GTPase RsgA; Reviewed 98.9 6E-09 1.3E-13 81.0 8.6 86 84-174 77-163 (298)
338 KOG3887 Predicted small GTPase 98.9 9.3E-09 2E-13 75.2 8.2 164 16-182 28-206 (347)
339 cd04178 Nucleostemin_like Nucl 98.9 6.5E-09 1.4E-13 74.2 6.9 56 13-73 115-171 (172)
340 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.1E-08 2.3E-13 70.9 6.1 53 17-74 85-138 (141)
341 TIGR00092 GTP-binding protein 98.8 1.2E-08 2.5E-13 80.6 6.9 83 16-98 3-108 (368)
342 KOG1491 Predicted GTP-binding 98.8 8.2E-09 1.8E-13 79.0 5.5 87 13-99 18-126 (391)
343 TIGR03348 VI_IcmF type VI secr 98.8 3.1E-08 6.8E-13 89.8 10.0 112 18-134 114-257 (1169)
344 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.2E-08 4.8E-13 70.6 6.9 54 15-73 102-156 (157)
345 KOG0099 G protein subunit Galp 98.8 5.3E-08 1.1E-12 72.2 8.3 122 64-185 202-376 (379)
346 TIGR03597 GTPase_YqeH ribosome 98.7 4.5E-08 9.8E-13 78.1 8.3 95 74-176 50-151 (360)
347 KOG2486 Predicted GTPase [Gene 98.7 7.2E-09 1.6E-13 77.3 3.2 158 12-176 133-314 (320)
348 cd01849 YlqF_related_GTPase Yl 98.7 1.5E-07 3.2E-12 66.2 8.7 86 89-179 1-86 (155)
349 KOG1143 Predicted translation 98.7 1.6E-07 3.5E-12 73.0 9.4 155 14-172 166-382 (591)
350 KOG0460 Mitochondrial translat 98.7 3.2E-07 6.9E-12 70.6 10.7 145 14-161 53-218 (449)
351 cd01855 YqeH YqeH. YqeH is an 98.7 4.2E-08 9E-13 71.5 5.8 54 15-73 127-189 (190)
352 PRK09563 rbgA GTPase YlqF; Rev 98.7 9.1E-08 2E-12 74.1 8.0 58 13-75 119-177 (287)
353 KOG0448 Mitofusin 1 GTPase, in 98.7 4.6E-07 1E-11 75.4 12.3 144 13-161 107-309 (749)
354 cd01858 NGP_1 NGP-1. Autoanti 98.7 9.2E-08 2E-12 67.5 7.3 89 84-178 5-95 (157)
355 TIGR03596 GTPase_YlqF ribosome 98.7 8.5E-08 1.8E-12 73.9 7.3 57 13-74 116-173 (276)
356 cd01856 YlqF YlqF. Proteins o 98.6 1.2E-07 2.7E-12 67.8 7.2 57 13-74 113-170 (171)
357 cd01859 MJ1464 MJ1464. This f 98.6 1.5E-07 3.2E-12 66.3 6.9 56 14-73 100-155 (156)
358 KOG0085 G protein subunit Galp 98.6 2.9E-08 6.2E-13 72.3 3.3 122 64-185 199-356 (359)
359 PF03193 DUF258: Protein of un 98.6 4.8E-08 1E-12 68.3 3.6 60 16-78 36-101 (161)
360 cd01849 YlqF_related_GTPase Yl 98.6 1.9E-07 4.1E-12 65.7 6.5 56 13-73 98-154 (155)
361 cd01856 YlqF YlqF. Proteins o 98.6 3E-07 6.6E-12 65.8 7.5 91 80-179 12-102 (171)
362 COG1161 Predicted GTPases [Gen 98.5 1.8E-07 3.9E-12 73.4 6.2 57 14-75 131-188 (322)
363 KOG0467 Translation elongation 98.5 4E-07 8.6E-12 76.5 7.8 116 10-132 4-136 (887)
364 KOG0463 GTP-binding protein GP 98.5 3.6E-07 7.8E-12 71.3 6.9 153 14-173 132-353 (641)
365 COG1618 Predicted nucleotide k 98.5 1.3E-05 2.8E-10 55.5 13.3 147 14-178 4-176 (179)
366 KOG0466 Translation initiation 98.5 5.9E-08 1.3E-12 73.5 2.1 167 11-183 34-246 (466)
367 COG3523 IcmF Type VI protein s 98.5 5.8E-07 1.3E-11 80.1 8.2 113 18-134 128-270 (1188)
368 cd01851 GBP Guanylate-binding 98.5 3.9E-06 8.6E-11 62.6 11.5 88 12-99 4-103 (224)
369 TIGR03596 GTPase_YlqF ribosome 98.5 6.5E-07 1.4E-11 69.0 7.1 101 71-180 4-105 (276)
370 PRK12288 GTPase RsgA; Reviewed 98.4 6.4E-07 1.4E-11 70.9 6.3 58 18-78 208-271 (347)
371 cd03112 CobW_like The function 98.4 1.6E-06 3.5E-11 61.2 7.6 21 18-38 3-23 (158)
372 PRK01889 GTPase RsgA; Reviewed 98.4 1.3E-06 2.9E-11 69.6 7.8 84 84-174 109-193 (356)
373 PRK10416 signal recognition pa 98.4 3E-06 6.5E-11 66.4 9.5 95 64-171 197-303 (318)
374 KOG0459 Polypeptide release fa 98.4 8.1E-07 1.8E-11 69.8 5.9 157 12-171 76-279 (501)
375 PRK13796 GTPase YqeH; Provisio 98.4 3.5E-06 7.6E-11 67.5 9.7 84 85-176 66-157 (365)
376 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.2E-06 2.7E-11 67.8 6.9 103 70-181 6-109 (287)
377 PF09547 Spore_IV_A: Stage IV 98.4 3.3E-05 7.2E-10 61.7 14.6 144 13-162 15-219 (492)
378 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.6E-06 3.4E-11 60.1 6.6 76 83-165 7-84 (141)
379 TIGR03597 GTPase_YqeH ribosome 98.4 1E-06 2.2E-11 70.4 6.4 56 16-76 155-216 (360)
380 TIGR01425 SRP54_euk signal rec 98.3 8E-06 1.7E-10 66.1 11.0 85 64-159 183-273 (429)
381 COG5192 BMS1 GTP-binding prote 98.3 5.9E-06 1.3E-10 67.9 9.9 113 10-134 64-177 (1077)
382 KOG0464 Elongation factor G [T 98.3 1E-07 2.2E-12 75.2 -0.1 113 16-134 38-168 (753)
383 TIGR00157 ribosome small subun 98.3 1.1E-06 2.5E-11 66.4 5.5 56 17-76 122-183 (245)
384 PRK13796 GTPase YqeH; Provisio 98.3 1E-06 2.2E-11 70.5 5.5 55 16-75 161-221 (365)
385 TIGR00064 ftsY signal recognit 98.3 1.5E-05 3.2E-10 61.2 11.5 95 64-171 155-261 (272)
386 PRK14974 cell division protein 98.3 1.3E-06 2.9E-11 68.6 5.8 96 64-172 223-324 (336)
387 KOG4273 Uncharacterized conser 98.2 2.5E-05 5.4E-10 57.9 10.8 157 15-177 4-221 (418)
388 COG1162 Predicted GTPases [Gen 98.2 2.1E-06 4.5E-11 65.7 5.2 59 17-78 166-230 (301)
389 PRK12289 GTPase RsgA; Reviewed 98.2 2.4E-06 5.1E-11 67.8 5.6 56 18-76 175-236 (352)
390 PRK12727 flagellar biosynthesi 98.2 7.4E-05 1.6E-09 61.9 13.6 107 64-183 429-545 (559)
391 KOG3859 Septins (P-loop GTPase 98.2 8.7E-06 1.9E-10 61.2 7.1 62 12-73 39-104 (406)
392 PRK14722 flhF flagellar biosyn 98.2 2.8E-05 6.2E-10 62.0 10.3 145 16-167 138-321 (374)
393 KOG0447 Dynamin-like GTP bindi 98.1 8.3E-05 1.8E-09 61.1 12.8 82 64-149 412-507 (980)
394 COG1162 Predicted GTPases [Gen 98.1 2.1E-05 4.6E-10 60.3 9.0 89 83-175 75-164 (301)
395 PF03266 NTPase_1: NTPase; In 98.1 6.5E-06 1.4E-10 58.6 5.7 135 17-166 1-163 (168)
396 PRK13695 putative NTPase; Prov 98.1 8.7E-05 1.9E-09 53.2 11.6 22 16-37 1-22 (174)
397 KOG0465 Mitochondrial elongati 98.1 3.5E-06 7.6E-11 69.5 4.7 114 14-133 38-169 (721)
398 cd01854 YjeQ_engC YjeQ/EngC. 98.1 6.8E-06 1.5E-10 63.7 5.8 59 16-77 162-226 (287)
399 PRK00098 GTPase RsgA; Reviewed 98.1 7.2E-06 1.6E-10 63.9 5.9 58 16-76 165-228 (298)
400 PRK11537 putative GTP-binding 98.1 3.5E-05 7.6E-10 60.5 9.4 86 64-159 91-186 (318)
401 KOG0469 Elongation factor 2 [T 98.0 4.5E-05 9.8E-10 62.0 9.5 131 11-145 15-175 (842)
402 cd03110 Fer4_NifH_child This p 98.0 0.0002 4.3E-09 51.5 11.7 84 63-156 92-175 (179)
403 KOG1424 Predicted GTP-binding 98.0 1.2E-05 2.5E-10 65.3 5.5 55 15-74 314-369 (562)
404 PRK00771 signal recognition pa 98.0 1.4E-05 3E-10 65.2 5.6 85 64-159 176-266 (437)
405 PRK14721 flhF flagellar biosyn 98.0 8.5E-05 1.8E-09 60.2 9.8 95 64-171 270-371 (420)
406 PRK11889 flhF flagellar biosyn 98.0 8.6E-05 1.9E-09 59.4 9.4 91 64-167 321-417 (436)
407 PRK05703 flhF flagellar biosyn 98.0 0.00021 4.5E-09 58.5 11.9 95 64-171 300-402 (424)
408 COG0523 Putative GTPases (G3E 97.9 0.00034 7.4E-09 54.9 12.4 99 64-171 85-194 (323)
409 PF00448 SRP54: SRP54-type pro 97.9 2.3E-05 5E-10 57.2 5.1 92 64-168 84-181 (196)
410 cd03114 ArgK-like The function 97.9 0.00011 2.3E-09 51.3 8.2 57 64-131 92-148 (148)
411 cd03115 SRP The signal recogni 97.9 0.00018 3.9E-09 51.5 9.5 83 64-157 83-171 (173)
412 KOG2485 Conserved ATP/GTP bind 97.9 2.8E-05 6.1E-10 59.4 5.4 61 12-74 140-206 (335)
413 PRK12726 flagellar biosynthesi 97.8 7.5E-05 1.6E-09 59.4 7.2 92 64-168 286-383 (407)
414 PRK06995 flhF flagellar biosyn 97.8 0.00047 1E-08 57.0 12.0 94 65-171 336-436 (484)
415 PF06858 NOG1: Nucleolar GTP-b 97.8 0.00012 2.6E-09 41.6 5.7 43 88-131 14-58 (58)
416 TIGR00959 ffh signal recogniti 97.8 0.00036 7.8E-09 56.9 10.6 85 64-159 183-273 (428)
417 COG1419 FlhF Flagellar GTP-bin 97.8 0.00055 1.2E-08 54.7 10.9 155 15-182 203-398 (407)
418 KOG2484 GTPase [General functi 97.7 2.5E-05 5.3E-10 61.6 3.3 57 13-74 250-307 (435)
419 PRK14723 flhF flagellar biosyn 97.7 0.00022 4.7E-09 61.8 9.1 98 64-171 264-368 (767)
420 PRK10867 signal recognition pa 97.7 0.0004 8.7E-09 56.7 9.9 85 64-159 184-274 (433)
421 cd02042 ParA ParA and ParB of 97.7 0.00023 5E-09 46.3 6.8 82 18-111 2-84 (104)
422 PRK12723 flagellar biosynthesi 97.6 0.002 4.4E-08 52.0 12.6 95 64-171 255-357 (388)
423 PRK06731 flhF flagellar biosyn 97.6 0.00046 1E-08 52.9 8.6 91 64-167 155-251 (270)
424 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00053 1.2E-08 43.6 7.7 76 18-108 2-78 (99)
425 PRK12724 flagellar biosynthesi 97.6 0.00056 1.2E-08 55.3 9.2 139 15-166 223-398 (432)
426 KOG1534 Putative transcription 97.6 0.0001 2.2E-09 53.4 4.2 113 65-180 99-253 (273)
427 cd00009 AAA The AAA+ (ATPases 97.5 0.00051 1.1E-08 47.1 7.3 26 15-40 19-44 (151)
428 KOG1533 Predicted GTPase [Gene 97.5 5.5E-05 1.2E-09 55.6 1.9 68 64-133 97-176 (290)
429 PF13207 AAA_17: AAA domain; P 97.5 9.9E-05 2.1E-09 49.4 3.0 22 17-38 1-22 (121)
430 COG0563 Adk Adenylate kinase a 97.5 0.00011 2.3E-09 52.9 3.0 23 16-38 1-23 (178)
431 PRK08118 topology modulation p 97.4 0.00011 2.5E-09 52.2 3.1 24 16-39 2-25 (167)
432 PRK07261 topology modulation p 97.4 0.00012 2.5E-09 52.4 3.0 23 16-38 1-23 (171)
433 cd02038 FleN-like FleN is a me 97.4 0.0021 4.5E-08 44.3 9.1 106 19-132 4-109 (139)
434 cd03222 ABC_RNaseL_inhibitor T 97.4 0.0016 3.4E-08 46.8 8.7 23 17-39 27-49 (177)
435 PF03215 Rad17: Rad17 cell cyc 97.4 0.0016 3.5E-08 54.6 9.8 22 17-38 47-68 (519)
436 cd03111 CpaE_like This protein 97.4 0.0008 1.7E-08 44.0 6.5 100 21-129 6-106 (106)
437 PF13671 AAA_33: AAA domain; P 97.4 0.00013 2.9E-09 50.3 2.8 22 18-39 2-23 (143)
438 PF13555 AAA_29: P-loop contai 97.4 0.00022 4.7E-09 41.5 3.0 21 17-37 25-45 (62)
439 PF13521 AAA_28: AAA domain; P 97.3 0.00015 3.4E-09 51.3 2.5 22 17-38 1-22 (163)
440 COG3640 CooC CO dehydrogenase 97.3 0.0016 3.5E-08 48.2 7.6 47 83-132 151-197 (255)
441 cd02019 NK Nucleoside/nucleoti 97.3 0.00027 5.8E-09 42.4 2.9 22 18-39 2-23 (69)
442 COG1126 GlnQ ABC-type polar am 97.2 0.00027 5.8E-09 51.6 2.9 23 17-39 30-52 (240)
443 PF11111 CENP-M: Centromere pr 97.2 0.04 8.7E-07 39.0 14.6 146 8-178 8-153 (176)
444 KOG2423 Nucleolar GTPase [Gene 97.2 0.00012 2.6E-09 57.9 0.8 53 16-73 308-361 (572)
445 PRK06217 hypothetical protein; 97.2 0.00035 7.5E-09 50.5 3.2 23 16-38 2-24 (183)
446 TIGR00150 HI0065_YjeE ATPase, 97.2 0.0012 2.5E-08 45.0 5.5 23 17-39 24-46 (133)
447 PF00005 ABC_tran: ABC transpo 97.2 0.00036 7.8E-09 47.8 3.0 24 17-40 13-36 (137)
448 COG1136 SalX ABC-type antimicr 97.1 0.00037 8E-09 51.6 2.9 23 17-39 33-55 (226)
449 PRK03839 putative kinase; Prov 97.1 0.00041 8.8E-09 50.0 3.0 22 17-38 2-23 (180)
450 PRK01889 GTPase RsgA; Reviewed 97.1 0.00058 1.3E-08 54.6 4.1 25 16-40 196-220 (356)
451 PF13238 AAA_18: AAA domain; P 97.1 0.0004 8.7E-09 46.8 2.7 21 18-38 1-21 (129)
452 COG0541 Ffh Signal recognition 97.1 0.0016 3.4E-08 52.5 6.1 85 64-159 183-273 (451)
453 PRK14738 gmk guanylate kinase; 97.1 0.00079 1.7E-08 49.7 4.1 28 11-38 9-36 (206)
454 cd02036 MinD Bacterial cell di 97.0 0.014 3.1E-07 41.6 10.5 84 65-156 64-147 (179)
455 PF00004 AAA: ATPase family as 97.0 0.00055 1.2E-08 46.3 2.9 22 18-39 1-22 (132)
456 COG1116 TauB ABC-type nitrate/ 97.0 0.00054 1.2E-08 51.1 3.0 22 18-39 32-53 (248)
457 TIGR00235 udk uridine kinase. 97.0 0.00079 1.7E-08 49.7 3.9 26 13-38 4-29 (207)
458 smart00382 AAA ATPases associa 97.0 0.00065 1.4E-08 46.1 3.2 27 16-42 3-29 (148)
459 PRK14530 adenylate kinase; Pro 97.0 0.00059 1.3E-08 50.7 3.2 21 16-36 4-24 (215)
460 PF04665 Pox_A32: Poxvirus A32 97.0 0.0006 1.3E-08 51.1 3.1 26 13-38 11-36 (241)
461 TIGR02322 phosphon_PhnN phosph 97.0 0.00058 1.3E-08 49.1 2.9 22 17-38 3-24 (179)
462 PRK10078 ribose 1,5-bisphospho 97.0 0.00061 1.3E-08 49.4 3.0 23 17-39 4-26 (186)
463 cd00071 GMPK Guanosine monopho 97.0 0.00067 1.4E-08 46.6 3.0 21 18-38 2-22 (137)
464 KOG2743 Cobalamin synthesis pr 97.0 0.0053 1.1E-07 47.2 7.8 67 63-134 145-225 (391)
465 COG0194 Gmk Guanylate kinase [ 97.0 0.00055 1.2E-08 48.8 2.4 24 16-39 5-28 (191)
466 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00071 1.5E-08 44.1 2.8 21 16-36 16-36 (107)
467 PF03205 MobB: Molybdopterin g 97.0 0.00073 1.6E-08 46.6 2.9 24 17-40 2-25 (140)
468 cd04178 Nucleostemin_like Nucl 97.0 0.002 4.4E-08 46.1 5.3 44 89-134 1-44 (172)
469 PRK08233 hypothetical protein; 97.0 0.00082 1.8E-08 48.3 3.3 24 15-38 3-26 (182)
470 PRK10646 ADP-binding protein; 96.9 0.0043 9.4E-08 43.2 6.5 22 17-38 30-51 (153)
471 PRK14532 adenylate kinase; Pro 96.9 0.00076 1.6E-08 48.9 3.0 22 16-37 1-22 (188)
472 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00078 1.7E-08 48.7 2.9 21 16-36 4-24 (188)
473 PRK13949 shikimate kinase; Pro 96.9 0.00087 1.9E-08 47.8 3.1 21 17-37 3-23 (169)
474 PRK14737 gmk guanylate kinase; 96.9 0.001 2.2E-08 48.2 3.4 24 16-39 5-28 (186)
475 PRK00625 shikimate kinase; Pro 96.9 0.00086 1.9E-08 48.0 3.0 21 17-37 2-22 (173)
476 TIGR03263 guanyl_kin guanylate 96.9 0.00085 1.8E-08 48.2 3.0 23 17-39 3-25 (180)
477 PTZ00088 adenylate kinase 1; P 96.9 0.001 2.2E-08 49.8 3.5 23 15-37 6-28 (229)
478 cd01130 VirB11-like_ATPase Typ 96.9 0.00096 2.1E-08 48.4 3.2 24 16-39 26-49 (186)
479 KOG0780 Signal recognition par 96.9 0.0021 4.4E-08 51.0 5.0 45 63-107 183-233 (483)
480 KOG3347 Predicted nucleotide k 96.9 0.00077 1.7E-08 46.3 2.4 24 13-36 5-28 (176)
481 PF02367 UPF0079: Uncharacteri 96.9 0.0019 4.1E-08 43.3 4.2 22 16-37 16-37 (123)
482 PRK02496 adk adenylate kinase; 96.9 0.0011 2.3E-08 48.0 3.2 22 16-37 2-23 (184)
483 PRK14531 adenylate kinase; Pro 96.9 0.001 2.2E-08 48.1 3.1 22 16-37 3-24 (183)
484 cd02023 UMPK Uridine monophosp 96.9 0.00093 2E-08 48.9 2.9 22 18-39 2-23 (198)
485 PRK10751 molybdopterin-guanine 96.8 0.0014 3.1E-08 46.7 3.7 25 15-39 6-30 (173)
486 PF07728 AAA_5: AAA domain (dy 96.8 0.001 2.2E-08 45.7 2.8 23 17-39 1-23 (139)
487 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.0011 2.4E-08 47.8 3.0 20 18-37 2-21 (183)
488 cd03238 ABC_UvrA The excision 96.8 0.0012 2.6E-08 47.4 3.1 21 16-36 22-42 (176)
489 COG0802 Predicted ATPase or ki 96.8 0.0039 8.5E-08 42.9 5.4 24 16-39 26-49 (149)
490 cd01428 ADK Adenylate kinase ( 96.8 0.0011 2.3E-08 48.3 2.8 22 17-38 1-22 (194)
491 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0013 2.8E-08 48.9 3.2 23 17-39 32-54 (218)
492 PRK05480 uridine/cytidine kina 96.8 0.0014 3.1E-08 48.4 3.4 25 14-38 5-29 (209)
493 PRK06547 hypothetical protein; 96.8 0.0016 3.4E-08 46.6 3.4 27 12-38 12-38 (172)
494 PRK04195 replication factor C 96.8 0.019 4.1E-07 48.1 10.3 25 15-39 39-63 (482)
495 COG1120 FepC ABC-type cobalami 96.8 0.0012 2.7E-08 49.9 3.0 21 18-38 31-51 (258)
496 COG3839 MalK ABC-type sugar tr 96.8 0.0012 2.6E-08 52.0 3.0 22 18-39 32-53 (338)
497 cd01131 PilT Pilus retraction 96.8 0.0058 1.3E-07 44.8 6.5 23 18-40 4-26 (198)
498 cd03225 ABC_cobalt_CbiO_domain 96.8 0.0014 3E-08 48.4 3.2 23 17-39 29-51 (211)
499 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0013 2.9E-08 45.5 2.9 23 17-39 28-50 (144)
500 TIGR00960 3a0501s02 Type II (G 96.7 0.0014 3.1E-08 48.6 3.2 23 17-39 31-53 (216)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-43 Score=242.64 Aligned_cols=179 Identities=63% Similarity=1.055 Sum_probs=169.6
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
..+.+|.+||+|+|..|+|||.|+.+|.+..+.+.+..|.+.++....+.++++.++++||||+|+++++.+...++|++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCc-EEEEecCCCCCHH
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK-FFETSAKTNFNVE 167 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 167 (216)
+++|+|||+++.++|..+..|+.++..+...++|.++|+||+|+.+ ...++.++++.|+..++++ ++++||+++.|+.
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~-~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE-KRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh-heecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 9999999999999999999999999999999999999999999965 7789999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccC
Q 027985 168 QVFFSIAREIKQRLVESDSKA 188 (216)
Q Consensus 168 ~l~~~l~~~~~~~~~~~~~~~ 188 (216)
++|..|...+.++........
T Consensus 162 ~~F~~la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 162 DAFLTLAKELKQRKGLHVKWS 182 (205)
T ss_pred HHHHHHHHHHHHhcccCCCCC
Confidence 999999999987776655443
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-40 Score=230.33 Aligned_cols=172 Identities=44% Similarity=0.749 Sum_probs=161.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...+||+++|..++|||||+-++..+.|.+...+|.+--+....+..++..++|.||||+|+++|.++.+.++|+++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35699999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
+|||+++.++|..++.|+..+.....+++-+.+|+||+|+.+ .+++..++++.+++..+..+|++||+++.|++++|..
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~-~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE-RREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh-cccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence 999999999999999999999998887788888999999976 7789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 027985 173 IAREIKQRLVESD 185 (216)
Q Consensus 173 l~~~~~~~~~~~~ 185 (216)
|.+.+.....+..
T Consensus 162 Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 162 IAEKLPCSDPQER 174 (200)
T ss_pred HHHhccCcccccc
Confidence 9999987665554
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-40 Score=228.99 Aligned_cols=171 Identities=40% Similarity=0.685 Sum_probs=159.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
-...||+++|..++||||||.+|+.+.|...|.+|.+.++...++.+.+..+.+++|||+|+++++.+.+.++|++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHAAD-NVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
+|||+++..+|++...|++.+...+.. ++.+++|+||.||.+ .+++..++.+..++++++.|.++||+.|+||+++|.
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d-krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD-KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc-hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence 999999999999999999999888765 477888999999976 688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 027985 172 SIAREIKQRLVES 184 (216)
Q Consensus 172 ~l~~~~~~~~~~~ 184 (216)
.|...+......+
T Consensus 179 rIaa~l~~~~~~~ 191 (221)
T KOG0094|consen 179 RIAAALPGMEVLE 191 (221)
T ss_pred HHHHhccCccccc
Confidence 9888888765543
No 4
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.2e-39 Score=217.73 Aligned_cols=203 Identities=43% Similarity=0.737 Sum_probs=172.2
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
.+..+.+||+++|.+|+|||+|+.+|....|.+....+.+.++....+.+++..+++.||||+|+++++.+.+.+++.+.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
++|+|||++..++|..+..|+.++..+. .+++..++|+||+|. +..+.++.++...|++++++.++++||++.+|++.
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk-es~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK-ESERVVDREEGLKFARKHRCLFIECSAKTRENVQC 164 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc-hhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence 9999999999999999999999998776 445667899999996 34688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 027985 169 VFFSIAREIKQRLVESDSKAEPQTIRISKPDPANGSAAAPEKSACCGS 216 (216)
Q Consensus 169 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 216 (216)
.|+.++..+.+-..--+......+.++.+. +.....-.+++||.|
T Consensus 165 ~FeelveKIi~tp~l~~~~n~~~~~~i~~~---p~~~~~~~~g~~Cs~ 209 (209)
T KOG0080|consen 165 CFEELVEKIIETPSLWEEGNSSAGLDIASD---PDGEASAHQGGCCSC 209 (209)
T ss_pred HHHHHHHHHhcCcchhhccCCccccccccC---CCcccccccCCccCC
Confidence 999999988754332222222233333321 223333445678876
No 5
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-38 Score=224.86 Aligned_cols=173 Identities=78% Similarity=1.261 Sum_probs=165.4
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
...++.+||+++|.+++|||+|+.+|....+...+..+.++++...++..++..+.+++|||+|++++..+...+++.++
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
++++|||+++..+++++..|+..+..+....+|.++|+||+|+.+ .+.+..+..+.++..+|+.++++||++|.||++.
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~-~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE-KRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc-cccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 999999999999999999999999999988999999999999965 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027985 170 FFSIAREIKQRLVE 183 (216)
Q Consensus 170 ~~~l~~~~~~~~~~ 183 (216)
|..|...+.++...
T Consensus 166 F~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 166 FLSLARDILQKLED 179 (207)
T ss_pred HHHHHHHHHhhcch
Confidence 99999999874443
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-37 Score=212.72 Aligned_cols=172 Identities=51% Similarity=0.924 Sum_probs=162.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
+.+.+|++++|+.|+|||.|+.+|+...|.+.++.|.+.++....++++++.++++||||+|++.+.+....+++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
|+|||++..++|..+..|+..+.++..++..+++++||+|+.. .+.++.++.+.|+++++..++++||++++|+.|.|.
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~-rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA-RREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc-cccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 9999999999999999999999999877889999999999954 679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 027985 172 SIAREIKQRLVES 184 (216)
Q Consensus 172 ~l~~~~~~~~~~~ 184 (216)
.....+++....-
T Consensus 162 nta~~Iy~~~q~g 174 (216)
T KOG0098|consen 162 NTAKEIYRKIQDG 174 (216)
T ss_pred HHHHHHHHHHHhc
Confidence 9888888765553
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.1e-36 Score=222.82 Aligned_cols=164 Identities=46% Similarity=0.931 Sum_probs=149.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+.|+++|..|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46899999999999999999999998888899888888888999998899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEecCCCCCHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
|++++++++.+..|+..+......+.|+++|+||+|+.+ .+++..++++.+++.. ++.++++||++|.||+++|++|.
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988777666799999999999954 5677888888888875 68999999999999999999999
Q ss_pred HHHHHH
Q 027985 175 REIKQR 180 (216)
Q Consensus 175 ~~~~~~ 180 (216)
+.+...
T Consensus 160 ~~~~~~ 165 (202)
T cd04120 160 DDILKK 165 (202)
T ss_pred HHHHHh
Confidence 988764
No 8
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.1e-36 Score=224.05 Aligned_cols=173 Identities=35% Similarity=0.679 Sum_probs=151.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.++ +..+.+.|||++|++.+..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988888998888887788887 7778999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQV 169 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l 169 (216)
||++++++++.+..|+..+.... ...+|+++|+||+|+.+ ...+..++++.+++..+ ..++++||++|+|++++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK-RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 99999999999999988876542 24689999999999954 45677888999999988 68999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCC
Q 027985 170 FFSIAREIKQRLVESDSKAE 189 (216)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~~ 189 (216)
|++|.+.+.+.........+
T Consensus 160 f~~l~~~l~~~~~~~~~~~~ 179 (201)
T cd04107 160 MRFLVKNILANDKNLQQAET 179 (201)
T ss_pred HHHHHHHHHHhchhhHhhcC
Confidence 99999998766554443333
No 9
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.9e-38 Score=208.03 Aligned_cols=184 Identities=55% Similarity=0.929 Sum_probs=166.6
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
++.++-++.+|+|.+|+|||+|+.+|....|..+|..+.+.++...++.++|..++++|||++|++.++.+...+++..+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
++++|||+++.++|.++++|++.+...+. .+|-++|+||.|.++ .+.+..++++.|+...++.+|++|+++.+|+...
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~-RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~m 160 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPE-RRVVDTEDARAFALQMGIELFETSAKENENVEAM 160 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCcc-ceeeehHHHHHHHHhcCchheehhhhhcccchHH
Confidence 99999999999999999999999988765 789999999999865 7788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hhhcccCCCccccc
Q 027985 170 FFSIAREIKQRL-VESDSKAEPQTIRI 195 (216)
Q Consensus 170 ~~~l~~~~~~~~-~~~~~~~~~~~~~~ 195 (216)
|.-|.+.+.+.. +++...-+....++
T Consensus 161 F~cit~qvl~~k~r~~~~~~r~~~~~l 187 (198)
T KOG0079|consen 161 FHCITKQVLQAKLRESVEQQRADAVSL 187 (198)
T ss_pred HHHHHHHHHHHHHhhcHHHHhhcceEe
Confidence 999999888776 44444444444444
No 10
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-36 Score=213.63 Aligned_cols=177 Identities=49% Similarity=0.852 Sum_probs=167.7
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
..+.++.|||+++|.+++|||-|+.+|....|.....+|.+.++....+.++++.++.+||||+|+++|+.+...+++.+
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
.++++|||++...+|+++.+|+.+++.+...++++++|+||+||.+ .+.+..++++.+++..+..++++||.++.|+.+
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~-lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH-LRAVPTEDGKAFAEKEGLFFLETSALDATNVEK 166 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh-ccccchhhhHhHHHhcCceEEEecccccccHHH
Confidence 9999999999999999999999999999988999999999999966 788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 027985 169 VFFSIAREIKQRLVESDS 186 (216)
Q Consensus 169 l~~~l~~~~~~~~~~~~~ 186 (216)
.|+.++..+.....++.-
T Consensus 167 aF~~~l~~I~~~vs~k~~ 184 (222)
T KOG0087|consen 167 AFERVLTEIYKIVSKKQL 184 (222)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999988888877666543
No 11
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=8.4e-37 Score=209.88 Aligned_cols=173 Identities=39% Similarity=0.697 Sum_probs=160.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....+||+++|.+|+|||+|++++.+..|...+..+.+-++..+.+.+++..+.++||||+|++++.++-..++|.+|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCC-CCCCCHHHHHHHHHHhC-CcEEEEecCCCC
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDES-KRAVPTAKGQELADEYG-IKFFETSAKTNF 164 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (216)
+++|||++++++++.+..|..++..+.. ...|+||++||+|+.+. .++++...++.+++..+ ++||++||++..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999987654 46899999999999663 48899999999999887 799999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 027985 165 NVEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 165 ~i~~l~~~l~~~~~~~~~~ 183 (216)
|+++.|+.+...+......
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999998876654
No 12
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.3e-35 Score=220.18 Aligned_cols=172 Identities=49% Similarity=0.879 Sum_probs=155.0
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
+.++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 45688999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
+|+|||.+++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.++...++.++++||++|.|++++|
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf 166 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH-LRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF 166 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887666799999999999854 45667788888888889999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027985 171 FSIAREIKQRLVE 183 (216)
Q Consensus 171 ~~l~~~~~~~~~~ 183 (216)
++|...+.+...+
T Consensus 167 ~~l~~~i~~~~~~ 179 (216)
T PLN03110 167 QTILLEIYHIISK 179 (216)
T ss_pred HHHHHHHHHHhhc
Confidence 9999998876443
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=8.6e-36 Score=216.13 Aligned_cols=166 Identities=49% Similarity=0.830 Sum_probs=151.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.++.+||+|+|..|+|||||+.+|....+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45779999999999999999999999888877778888888778888899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
|+|||++++.+++.+..|+..+.... .+.|++||+||.|+.+ ...+..++++.+++..++.+++|||++|.||+++|+
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~-~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAF-KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchh-ccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999999999997765 4799999999999954 456788899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027985 172 SIAREIKQ 179 (216)
Q Consensus 172 ~l~~~~~~ 179 (216)
+|.+.+..
T Consensus 161 ~l~~~i~~ 168 (189)
T cd04121 161 ELARIVLM 168 (189)
T ss_pred HHHHHHHH
Confidence 99987753
No 14
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.3e-35 Score=217.86 Aligned_cols=197 Identities=52% Similarity=0.890 Sum_probs=162.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 45689999999999999999999999998888888888888888888888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
++|||++++++++.+..|+..+.... ...|++||+||+|+.+ ...+..+++..+++..++.++++||++|.||+++|+
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPE-RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN 160 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence 99999999999999999999887654 4689999999999864 345667788888888889999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCcccccCCCCCCCCCCCCCCCCCCC
Q 027985 172 SIAREIKQRLVESDSKAEPQTIRISKPDPANGSAAAPEKSACC 214 (216)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 214 (216)
+|.+.+.....+...+... .+.......+...++++.||
T Consensus 161 ~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 161 CITELVLRAKKDNLAKQQQ----QQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHHHhhhccCccccc----CCccccCccchhccccccCC
Confidence 9999997665444322222 22223333444445556676
No 15
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.7e-35 Score=218.80 Aligned_cols=188 Identities=30% Similarity=0.547 Sum_probs=152.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+++|||||+++|....+.. ..++.+.++....+ ..+.+.|||++|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 46666555443332 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------------CCCCCCHHHHHHHHHHhC-----
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE------------------SKRAVPTAKGQELADEYG----- 152 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------------~~~~~~~~~~~~~~~~~~----- 152 (216)
|++++++++.+..|+..+......+.|+++|+||+|+.+ ..+.+..++++.+++..+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999998888766556789999999999964 246788899999998876
Q ss_pred ---------CcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhcccCCCcccccCCCCCCCCCCCCCCCCCCC
Q 027985 153 ---------IKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEPQTIRISKPDPANGSAAAPEKSACC 214 (216)
Q Consensus 153 ---------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 214 (216)
+.|+++||++|+||+++|..+++.+.....+........ .......+++.+|++||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT------QGTVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh------hccccCCCcccCCCCCC
Confidence 679999999999999999999998887666654322211 22223344677888888
No 16
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8e-35 Score=215.14 Aligned_cols=170 Identities=45% Similarity=0.805 Sum_probs=149.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+ ++..+.+.|||++|++.+..++..+++.+|++|
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 3589999999999999999999999988888888888887777776 456689999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
+|||++++++++.+..|+..+..... ...|+++|+||.|+.+ ...+..++...+++..++.++++||++|+|++++|+
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~ 159 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES-QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFE 159 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999998876543 3577899999999865 456778888999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 027985 172 SIAREIKQRLVES 184 (216)
Q Consensus 172 ~l~~~~~~~~~~~ 184 (216)
+|.+.+.++....
T Consensus 160 ~l~~~~~~~~~~~ 172 (211)
T cd04111 160 LLTQEIYERIKRG 172 (211)
T ss_pred HHHHHHHHHhhcC
Confidence 9999887775433
No 17
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-35 Score=196.70 Aligned_cols=178 Identities=54% Similarity=0.954 Sum_probs=166.7
Q ss_pred ccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027985 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (216)
...+..++.+|++|+|...+|||+|+.++.+..+...+..+.++++..+++.-..+.++++||||.|++.++.+...++|
T Consensus 13 s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR 92 (193)
T KOG0093|consen 13 SIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR 92 (193)
T ss_pred cccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhh
Confidence 34457889999999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNV 166 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (216)
+++++|++||.++.+++..++.|...+..+...+.|+|+|+||+|+ ++++.++.+..+.+++++|..+|++||+.+.|+
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDm-d~eRvis~e~g~~l~~~LGfefFEtSaK~NinV 171 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDM-DSERVISHERGRQLADQLGFEFFETSAKENINV 171 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCC-ccceeeeHHHHHHHHHHhChHHhhhcccccccH
Confidence 9999999999999999999999999999999899999999999999 447789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 027985 167 EQVFFSIAREIKQRLVESD 185 (216)
Q Consensus 167 ~~l~~~l~~~~~~~~~~~~ 185 (216)
+++|+.+...+.....++.
T Consensus 172 k~~Fe~lv~~Ic~kmsesl 190 (193)
T KOG0093|consen 172 KQVFERLVDIICDKMSESL 190 (193)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 9999999999987766654
No 18
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.8e-36 Score=201.25 Aligned_cols=177 Identities=32% Similarity=0.672 Sum_probs=160.3
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
...+.+.|||+++|..-+|||+|+-+++...|.-....+..-.+....+.+.+...++.||||+|++.|..+-+-+++..
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 34677889999999999999999999999999877666665566677778888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
+++++|||++|..+|+.+++|..++.......+.++||+||+|+. .++.+..+++..+++..|..++++||+++.||.+
T Consensus 87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE-eeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE-EERQVTRQEAEAYAESVGALYMETSAKDNVGISE 165 (218)
T ss_pred CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH-HhhhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence 999999999999999999999999999988888999999999994 4788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 027985 169 VFFSIAREIKQRLVESDS 186 (216)
Q Consensus 169 l~~~l~~~~~~~~~~~~~ 186 (216)
+|+.|...+.++..+...
T Consensus 166 lFe~Lt~~MiE~~s~~qr 183 (218)
T KOG0088|consen 166 LFESLTAKMIEHSSQRQR 183 (218)
T ss_pred HHHHHHHHHHHHhhhccc
Confidence 999999998887755443
No 19
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=9.1e-35 Score=212.13 Aligned_cols=190 Identities=49% Similarity=0.897 Sum_probs=156.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
+||+|+|.+|+|||||+++|.+..+.. .+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988754 5677777677666778888889999999999999888888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
||++++++++.+..|+..+......+.|+++|+||+|+.. ...+..++++.+++..+++++++||++|+|++++|.+|.
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG-ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999887666789999999999964 345667788888888889999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCcccccCCCCCCCCCCCCCCCCCCC
Q 027985 175 REIKQRLVESDSKAEPQTIRISKPDPANGSAAAPEKSACC 214 (216)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 214 (216)
+.+.....+.....+ - .-+......+++++||
T Consensus 160 ~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 160 KELKHRKYEQPDEGK---F-----KISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHHhccccCCCCc---E-----EeccccCcccccCCCC
Confidence 998766433221111 1 1234445556667787
No 20
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.9e-34 Score=213.31 Aligned_cols=168 Identities=22% Similarity=0.478 Sum_probs=148.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....+||+++|.+|+|||+|+++|....+...+.|+.+..+. ..+.+++..+.+.||||+|++.+..++..+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 3346789999999999999999999999999888888875554 457888889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEE
Q 027985 91 ILLVYDVTDESSFNN-IRNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFE 157 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~ 157 (216)
+|+|||++++++++. +..|+..+..... ..|+++|+||+|+.+. ...+..++++.+++.+++ .|++
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 4789999887653 6899999999998542 356888999999999998 6999
Q ss_pred EecCCCC-CHHHHHHHHHHHHHHH
Q 027985 158 TSAKTNF-NVEQVFFSIAREIKQR 180 (216)
Q Consensus 158 ~Sa~~~~-~i~~l~~~l~~~~~~~ 180 (216)
|||++|+ ||+++|..++..+.+.
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHh
Confidence 9999998 8999999999988764
No 21
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=5.5e-34 Score=210.69 Aligned_cols=172 Identities=51% Similarity=0.899 Sum_probs=153.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.++.+||+|+|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45779999999999999999999999988888888888888778888888888999999999999888888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
|+|||++++++++.+..|+..+........|+++|+||+|+.+ ...+..++++.+++.+++.++++||+++.|++++|.
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999888776656799999999999854 456778889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 027985 172 SIAREIKQRLVES 184 (216)
Q Consensus 172 ~l~~~~~~~~~~~ 184 (216)
++.+.+.++..+.
T Consensus 162 ~l~~~~~~~~~~~ 174 (210)
T PLN03108 162 KTAAKIYKKIQDG 174 (210)
T ss_pred HHHHHHHHHhhhc
Confidence 9999988765433
No 22
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.7e-34 Score=207.98 Aligned_cols=164 Identities=50% Similarity=0.866 Sum_probs=147.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998778888888887788888888899999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
|.++++++..+..|+..+........|+++|+||.|+.+ ...+..++++.+++..++.++++||++|.|++++|.+|.+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN-NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc-cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999877666789999999999864 3456777888888888899999999999999999999999
Q ss_pred HHHHH
Q 027985 176 EIKQR 180 (216)
Q Consensus 176 ~~~~~ 180 (216)
.+..+
T Consensus 160 ~~~~~ 164 (188)
T cd04125 160 LIIKR 164 (188)
T ss_pred HHHHH
Confidence 98754
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.1e-34 Score=205.85 Aligned_cols=164 Identities=48% Similarity=0.860 Sum_probs=147.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+++|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999999888888877777777788888889999999999999999899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|+|++++|.++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA-QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999988776656789999999999965 445677888899998899999999999999999999998
Q ss_pred HHHHH
Q 027985 175 REIKQ 179 (216)
Q Consensus 175 ~~~~~ 179 (216)
..+.+
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 87753
No 24
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=3.2e-34 Score=212.80 Aligned_cols=164 Identities=34% Similarity=0.582 Sum_probs=146.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECC-eEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
+||+++|.+|+|||||+++|.+..+...+.++.+.+++...+.+++ ..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999889999999888888888864 468999999999999899999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
||++++++++.+..|+..+..... .+.|+++|+||.|+.+ .+.+..+..+.+++..++.++++||++|+|++++|+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH-NRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 999999999999999999877643 3468899999999964 456777888899998899999999999999999999
Q ss_pred HHHHHHHHH
Q 027985 172 SIAREIKQR 180 (216)
Q Consensus 172 ~l~~~~~~~ 180 (216)
+|...+...
T Consensus 160 ~l~~~l~~~ 168 (215)
T cd04109 160 QLAAELLGV 168 (215)
T ss_pred HHHHHHHhc
Confidence 999988764
No 25
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.8e-34 Score=205.33 Aligned_cols=166 Identities=78% Similarity=1.274 Sum_probs=150.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999999998888898888887778888888889999999999998888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
+|||+++++++..+.+|+..+......+.|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE-KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999877666789999999999965 4456777888888888899999999999999999999
Q ss_pred HHHHHHH
Q 027985 173 IAREIKQ 179 (216)
Q Consensus 173 l~~~~~~ 179 (216)
|.+.+..
T Consensus 160 i~~~~~~ 166 (167)
T cd01867 160 LAKDIKK 166 (167)
T ss_pred HHHHHHh
Confidence 9988753
No 26
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=8.8e-34 Score=207.38 Aligned_cols=165 Identities=34% Similarity=0.642 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
+||+|+|.+|+|||||+++|+++.+.. .+.++.+..+....+.+++..+.+.|||++|++.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 5777777777777788898889999999999999888888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---CCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES---KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. ...+..++++.++...++.++++||++++|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887653 36899999999998542 234556677888888889999999999999999999
Q ss_pred HHHHHHHHHH
Q 027985 172 SIAREIKQRL 181 (216)
Q Consensus 172 ~l~~~~~~~~ 181 (216)
+|.+.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999887544
No 27
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=4.8e-34 Score=204.82 Aligned_cols=160 Identities=34% Similarity=0.684 Sum_probs=143.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+++|||+|+.++..+.+...+.++.+..+ ...+.+++..+++.||||+|++++..++..+++.++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888888887554 455778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC---------CCCCHHHHHHHHHHhCC-cEEEEecCCCC
Q 027985 96 DVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDESK---------RAVPTAKGQELADEYGI-KFFETSAKTNF 164 (216)
Q Consensus 96 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (216)
|++++++++.+ ..|+..+..... +.|+++|+||+|+.+.. ..+..++++.+++..++ .+++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 689998876654 79999999999995432 34788899999999998 69999999999
Q ss_pred CHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREI 177 (216)
Q Consensus 165 ~i~~l~~~l~~~~ 177 (216)
||+++|+.+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999876
No 28
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=3.7e-34 Score=208.75 Aligned_cols=165 Identities=34% Similarity=0.616 Sum_probs=141.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+|+|.+|+|||||+++|+...+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888777777765443 3455677877899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985 97 VTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (216)
+++.++++.+..|+..+..... .+.|+++|+||+|+.+ ...+...+...+++..++.++++||++|.|++++|+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY-EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999988866532 4689999999999964 45566777788888889999999999999999999999
Q ss_pred HHHHHHHHhh
Q 027985 174 AREIKQRLVE 183 (216)
Q Consensus 174 ~~~~~~~~~~ 183 (216)
.+.+.++...
T Consensus 159 ~~~l~~~~~~ 168 (190)
T cd04144 159 VRALRQQRQG 168 (190)
T ss_pred HHHHHHhhcc
Confidence 9887654444
No 29
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6.3e-35 Score=196.79 Aligned_cols=172 Identities=47% Similarity=0.779 Sum_probs=157.2
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccccccccccccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
...|.++++|+|++-+|||+|++.|+.+.+.+-.+|+++.+++...+++ +|..+++++|||+|++.+.++...++++.-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 3568899999999999999999999999999999999999998888777 466799999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC-C-CCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAA-D-NVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
++++|||.++.++|+.+..|+.+...+.. + ++-+.+|++|+|+. ..+++..++++.+++.+++.++++|+++|.|++
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~-SqRqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ-SQRQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh-hhccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 99999999999999999999988876654 3 34446789999995 588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027985 168 QVFFSIAREIKQRLVE 183 (216)
Q Consensus 168 ~l~~~l~~~~~~~~~~ 183 (216)
+.|..|.+.+.....+
T Consensus 163 EAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 163 EAFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988777
No 30
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=7.2e-34 Score=205.10 Aligned_cols=164 Identities=26% Similarity=0.557 Sum_probs=145.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....+||+++|.+|+|||||+++|..+.+...+.|+.+..+ ...+.+++..+.+.||||+|++.+..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 34678999999999999999999999999888888887554 45677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEE
Q 027985 92 LLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFET 158 (216)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~ 158 (216)
|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. ...+..++++.+++.+++ .|++|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 789999887654 6899999999998542 345889999999999996 89999
Q ss_pred ecCCCCC-HHHHHHHHHHHH
Q 027985 159 SAKTNFN-VEQVFFSIAREI 177 (216)
Q Consensus 159 Sa~~~~~-i~~l~~~l~~~~ 177 (216)
||++|+| |+++|..++..+
T Consensus 160 SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 160 SALQSENSVRDIFHVATLAC 179 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHH
Confidence 9999998 999999988754
No 31
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=6.1e-34 Score=207.43 Aligned_cols=165 Identities=40% Similarity=0.657 Sum_probs=143.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..+||+|+|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999988777777765444 4567788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..+++..+++..+++++++||++|.|++++|++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS-ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 999999999999999998887654 34789999999999854 4456677788888888899999999999999999999
Q ss_pred HHHHHHHH
Q 027985 173 IAREIKQR 180 (216)
Q Consensus 173 l~~~~~~~ 180 (216)
|.+.+.+.
T Consensus 162 l~~~l~~~ 169 (189)
T PTZ00369 162 LVREIRKY 169 (189)
T ss_pred HHHHHHHH
Confidence 99888654
No 32
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.7e-33 Score=208.19 Aligned_cols=165 Identities=25% Similarity=0.519 Sum_probs=141.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||+|+++|....+...+.|+....+. ..+.+++..+.+.|||++|++.+..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999998888898875543 56778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985 96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETSAKT 162 (216)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
|++++++++.+. .|...+... ..+.|+++|+||+|+.+. ...+..++++.+++..++ .|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999995 465555443 457999999999999542 123778899999999995 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHHHh
Q 027985 163 NFN-VEQVFFSIAREIKQRLV 182 (216)
Q Consensus 163 ~~~-i~~l~~~l~~~~~~~~~ 182 (216)
+++ |+++|..+......+..
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccC
Confidence 885 99999998887765443
No 33
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.5e-33 Score=205.51 Aligned_cols=163 Identities=30% Similarity=0.608 Sum_probs=141.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..+||+++|..++|||||+.+|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.+..++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 358999999999999999999999999888888887544 3456778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhC-CcEEEEec
Q 027985 94 VYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYG-IKFFETSA 160 (216)
Q Consensus 94 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~Sa 160 (216)
|||++++.+++.+. .|+..+.... .+.|+++|+||.|+.+.. ..+..++++.+++..+ +.++++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999997 5877776654 479999999999996432 2356778899999888 58999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 027985 161 KTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~ 178 (216)
++|+||+++|++|.+.+.
T Consensus 160 k~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998774
No 34
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-34 Score=190.81 Aligned_cols=171 Identities=47% Similarity=0.874 Sum_probs=159.1
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
++..+-+||+++|..|+|||.|+++|+.+.|++..-.+.+.++..+++++++.+++++||||+|+++++++...+++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
++|+|||++...+|+-+.+|+.++..+...++-.|+|+||+|+.+ .+++.....++|.+...+-+.++||++-+|++.|
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d-rrevp~qigeefs~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD-RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh-hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence 999999999999999999999999999887888899999999954 6678889999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027985 170 FFSIAREIKQRL 181 (216)
Q Consensus 170 ~~~l~~~~~~~~ 181 (216)
|..+.-.+...-
T Consensus 161 f~~~a~rli~~a 172 (213)
T KOG0095|consen 161 FLDLACRLISEA 172 (213)
T ss_pred HHHHHHHHHHHH
Confidence 998877665443
No 35
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.6e-33 Score=201.24 Aligned_cols=163 Identities=71% Similarity=1.147 Sum_probs=147.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999998888888888788888888888888999999999999988889999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
||+++++++..+..|+..+......+.|+++|+||.|+.+ ...+..+++..+++..+++++++||++|+|++++|.+|.
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD-KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 9999999999999999998877656789999999999854 445677888889998899999999999999999999998
Q ss_pred HHHH
Q 027985 175 REIK 178 (216)
Q Consensus 175 ~~~~ 178 (216)
+.+.
T Consensus 161 ~~~~ 164 (166)
T cd01869 161 REIK 164 (166)
T ss_pred HHHH
Confidence 8775
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.6e-33 Score=200.00 Aligned_cols=162 Identities=56% Similarity=0.980 Sum_probs=145.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888887777777777777789999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
|.+++++++.+..|+..+........|+++|+||+|+.+ ......+....+++..++.++++||++|.|++++|++|.+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED-ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998777656789999999999965 3445667788888888899999999999999999999988
Q ss_pred HHH
Q 027985 176 EIK 178 (216)
Q Consensus 176 ~~~ 178 (216)
.+.
T Consensus 161 ~~~ 163 (165)
T cd01865 161 IIC 163 (165)
T ss_pred HHH
Confidence 764
No 37
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.9e-33 Score=202.53 Aligned_cols=161 Identities=25% Similarity=0.551 Sum_probs=142.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
++||+++|.+|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.||||+|++.+..+...+++.+|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999888888876554 45678888889999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEEecC
Q 027985 95 YDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETSAK 161 (216)
Q Consensus 95 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (216)
||++++++++.+ ..|+..+..... ..|+++|+||+|+.+. ...+..++++.+++.+++ .++++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 789998887654 7899999999999541 245888999999999997 89999999
Q ss_pred CCCC-HHHHHHHHHHHH
Q 027985 162 TNFN-VEQVFFSIAREI 177 (216)
Q Consensus 162 ~~~~-i~~l~~~l~~~~ 177 (216)
+|+| |+++|..++...
T Consensus 159 ~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 159 TSEKSVRDIFHVATMAC 175 (178)
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 9995 999999988854
No 38
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.2e-33 Score=199.51 Aligned_cols=160 Identities=55% Similarity=0.988 Sum_probs=145.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
++|+++|++|+|||||++++.++.+.+.+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888888888888888889999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
|++++++++.+..|+..+......+.|+++|+||.|+.+ ...+..++...+++..++.++++||++|.|++++|.+|.+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ-KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 999999999999999988876655789999999999854 4556778899999988999999999999999999999976
Q ss_pred H
Q 027985 176 E 176 (216)
Q Consensus 176 ~ 176 (216)
.
T Consensus 160 ~ 160 (161)
T cd04117 160 L 160 (161)
T ss_pred h
Confidence 4
No 39
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.3e-33 Score=201.33 Aligned_cols=163 Identities=33% Similarity=0.592 Sum_probs=143.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 37999999999999999999999999877777776444 44567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (216)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++.+.+++..++.++++||++|.||+++|++|
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES-QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh-cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 99999999999999888776643 35799999999999854 45678888999999999999999999999999999999
Q ss_pred HHHHHH
Q 027985 174 AREIKQ 179 (216)
Q Consensus 174 ~~~~~~ 179 (216)
...+.+
T Consensus 160 ~~~~~~ 165 (172)
T cd04141 160 VREIRR 165 (172)
T ss_pred HHHHHH
Confidence 988765
No 40
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=2.3e-33 Score=202.83 Aligned_cols=163 Identities=27% Similarity=0.547 Sum_probs=142.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|..|+|||||+++|+...+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999888887788889988899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----CCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES----KRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
|++++++++.+..|+..+........| ++|+||+|+... ......++.+.+++..++.++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988776554566 688999998531 111234567778888889999999999999999999
Q ss_pred HHHHHHHH
Q 027985 172 SIAREIKQ 179 (216)
Q Consensus 172 ~l~~~~~~ 179 (216)
++.+.+.+
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99988864
No 41
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3.8e-33 Score=201.82 Aligned_cols=167 Identities=51% Similarity=0.937 Sum_probs=146.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC----------CeEEEEEEEeCCCccccccccc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD----------GKRIKLQIWDTAGQERFRTITT 82 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~ 82 (216)
++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+. +..+.+.|||+||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999988888888877766666554 3558999999999999999999
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK 161 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (216)
.+++++|++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++..+++++++||+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED-QRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh-cCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 99999999999999999999999999999887653 34689999999999965 45567788899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027985 162 TNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~ 180 (216)
+|.|++++|++|.+.+.++
T Consensus 161 ~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 161 TGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999877643
No 42
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=5.5e-33 Score=198.85 Aligned_cols=166 Identities=52% Similarity=0.924 Sum_probs=149.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
++.+||+|+|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999988888888888887788888888889999999999998888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
+|||+++++++..+..|+..+......+.|+++|+||.|+.+ ...+..++++.++...++.++++||++++|++++|.+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES-RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999877666799999999999864 4456778888888888999999999999999999999
Q ss_pred HHHHHHH
Q 027985 173 IAREIKQ 179 (216)
Q Consensus 173 l~~~~~~ 179 (216)
+.+.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9988754
No 43
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=5.9e-33 Score=202.06 Aligned_cols=167 Identities=31% Similarity=0.584 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
+||+|+|.+|+|||||+++|.++.+...+.++.+.++. ..+... +..+.+.||||||++.+..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999999998887777765543 345554 6678999999999999988888899999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC---CCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHH
Q 027985 95 YDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES---KRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQV 169 (216)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l 169 (216)
||++++++++.+. .|+..+.... .+.|+++|+||.|+... ...+..++++.++...++ .++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 4777766543 47899999999998542 234667888899999887 8999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 027985 170 FFSIAREIKQRLVES 184 (216)
Q Consensus 170 ~~~l~~~~~~~~~~~ 184 (216)
|+.+.+.+.......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999987555444
No 44
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=3.7e-33 Score=199.47 Aligned_cols=162 Identities=33% Similarity=0.730 Sum_probs=146.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888999888888888888888899999999999988888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAA-----DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
|.+++++++.+..|+..+..... .+.|+++|+||+|+.+ ......++.+.++...++.++++||++|+|++++|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK-HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999877653 4689999999999864 34567777888888888999999999999999999
Q ss_pred HHHHHHHH
Q 027985 171 FSIAREIK 178 (216)
Q Consensus 171 ~~l~~~~~ 178 (216)
++|.+.+.
T Consensus 160 ~~l~~~l~ 167 (168)
T cd04119 160 QTLFSSIV 167 (168)
T ss_pred HHHHHHHh
Confidence 99988764
No 45
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=6.6e-33 Score=197.84 Aligned_cols=163 Identities=52% Similarity=0.913 Sum_probs=146.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
+.++|+|+|.+++|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 56899999999999999999999999888888888888888888888888899999999999988888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (216)
|||++++.++..+.+|+..+......+.|+++|+||.|+.+ ...+..++.+.++...++.++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999998877665689999999999865 34566778888888888999999999999999999999
Q ss_pred HHHH
Q 027985 174 AREI 177 (216)
Q Consensus 174 ~~~~ 177 (216)
.+.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8765
No 46
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.7e-33 Score=197.84 Aligned_cols=163 Identities=48% Similarity=0.879 Sum_probs=144.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
++.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 35699999999999999999999998888888888877777788888888789999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~ 171 (216)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ......+.+..+++..+. .++++||++|.|++++|+
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE-QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 999999999999999999999876666799999999999965 345667778888888775 789999999999999999
Q ss_pred HHHHH
Q 027985 172 SIARE 176 (216)
Q Consensus 172 ~l~~~ 176 (216)
+|.+.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 99865
No 47
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=3e-32 Score=201.81 Aligned_cols=172 Identities=49% Similarity=0.807 Sum_probs=144.1
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
..+....+||+|+|.+|+|||||+++|++..+. .+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 344556799999999999999999999988774 4567777777777788888888999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHH-HHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985 89 MGILLVYDVTDESSFNNIRN-WMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNV 166 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (216)
|++|+|||++++++++.+.. |...+.... ..+.|+++|+||+|+.. ...+..++...++...++.+|++||+++.|+
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES-ERDVSREEGMALAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999976 444444332 23578999999999864 3446677788888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027985 167 EQVFFSIAREIKQRLV 182 (216)
Q Consensus 167 ~~l~~~l~~~~~~~~~ 182 (216)
+++|++|.+.+.....
T Consensus 166 ~~l~~~l~~~~~~~~~ 181 (211)
T PLN03118 166 EQCFEELALKIMEVPS 181 (211)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999976543
No 48
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=6e-33 Score=197.48 Aligned_cols=161 Identities=42% Similarity=0.820 Sum_probs=151.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+|+|++++|||||+++|.+..+...+.++.+.+.....+..++..+.+.|||++|++.+..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998888999999999999999999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHH
Q 027985 97 VTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (216)
.+++++++.+..|+..+........|+++|+||.|+.+ .+.+..++++.+++.++..++++||+++.||.++|..+++.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccc-cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999988876789999999999865 56888899999999999999999999999999999999988
Q ss_pred HH
Q 027985 177 IK 178 (216)
Q Consensus 177 ~~ 178 (216)
+.
T Consensus 160 i~ 161 (162)
T PF00071_consen 160 IL 161 (162)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=9.5e-33 Score=205.10 Aligned_cols=165 Identities=28% Similarity=0.566 Sum_probs=145.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.+..+||+++|.+|+|||||+++++.+.+...+.++.+.++....+..++..+.+.|||++|++.+..++..+++.++++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 37889999999999999999999999999888889988888777777777779999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+ ..+..+.+ .+.+..++.+|++||++|.|++++|.
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh--ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHH
Confidence 99999999999999999999987764 4799999999999853 33344444 66777788999999999999999999
Q ss_pred HHHHHHHHH
Q 027985 172 SIAREIKQR 180 (216)
Q Consensus 172 ~l~~~~~~~ 180 (216)
+|.+.+.+.
T Consensus 166 ~l~~~~~~~ 174 (219)
T PLN03071 166 YLARKLAGD 174 (219)
T ss_pred HHHHHHHcC
Confidence 999888643
No 50
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.7e-32 Score=196.52 Aligned_cols=163 Identities=37% Similarity=0.707 Sum_probs=143.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+++|.+|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998899998888887888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 97 VTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKR-AVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
+++++++..+..|+..+.... ....|+++|+||.|+.+... ....++++.+++..++.++++||++|.|++++|+.|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999998886543 44578899999999854322 3345667788888889999999999999999999999
Q ss_pred HHHHH
Q 027985 175 REIKQ 179 (216)
Q Consensus 175 ~~~~~ 179 (216)
..+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88754
No 51
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.6e-32 Score=197.38 Aligned_cols=161 Identities=28% Similarity=0.569 Sum_probs=139.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+|+|.+|+|||||+++|..+.+...+.|+.+..+. ..+..++..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999998888888765543 4567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhC-CcEEEEecC
Q 027985 95 YDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYG-IKFFETSAK 161 (216)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 161 (216)
||++++++++.+. .|+..+.... .+.|+++|+||+|+.+. .+.+..++++.+++..+ +.++++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999997 4887776654 46899999999998543 24567788888998887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027985 162 TNFNVEQVFFSIAREI 177 (216)
Q Consensus 162 ~~~~i~~l~~~l~~~~ 177 (216)
+|+|++++|+.++..+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988754
No 52
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=2.2e-32 Score=194.81 Aligned_cols=163 Identities=58% Similarity=0.995 Sum_probs=147.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999998888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
|+.++.+++.+..|+..+..+...+.|+++|+||+|+.. ...+..+.++.+.+..++.++++|++++.|++++|++|.+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED-QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999998877656899999999999854 3456777888888888999999999999999999999998
Q ss_pred HHHH
Q 027985 176 EIKQ 179 (216)
Q Consensus 176 ~~~~ 179 (216)
.+.+
T Consensus 160 ~~~~ 163 (164)
T smart00175 160 EILK 163 (164)
T ss_pred HHhh
Confidence 8754
No 53
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.8e-32 Score=194.73 Aligned_cols=160 Identities=32% Similarity=0.676 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|++|+|||||+++++...+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888888877777777777778899999999999998888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
|+++++++..+..|+..+..... +.|+++|+||+|+.+ .... .....+.+..++.++++||++|+|++++|++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD--RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc--ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence 99999999999999999987765 799999999999863 2233 3344566667789999999999999999999998
Q ss_pred HHHH
Q 027985 176 EIKQ 179 (216)
Q Consensus 176 ~~~~ 179 (216)
.+.+
T Consensus 157 ~~~~ 160 (166)
T cd00877 157 KLLG 160 (166)
T ss_pred HHHh
Confidence 8864
No 54
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.8e-32 Score=197.95 Aligned_cols=161 Identities=30% Similarity=0.558 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
.||+|+|.+|+|||||+++|....+...+.++.+..+ ...+..++..+.+.|||++|++.+..++..+++.+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3799999999999999999999999887778776554 345667777789999999999999989999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------CCCHHHHHHHHHHhC-CcEEEEecCC
Q 027985 96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKR-----------AVPTAKGQELADEYG-IKFFETSAKT 162 (216)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (216)
|++++++++.+. .|+..+.... .+.|+++|+||+|+.+... .+..++...+++..+ +.++++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 5888887654 3789999999999964321 345667777887777 6899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAREIK 178 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~~ 178 (216)
|+|++++|.+|.+.+.
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998886
No 55
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.2e-32 Score=194.35 Aligned_cols=160 Identities=49% Similarity=0.852 Sum_probs=144.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888887787778888888889999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
|+++++++..+..|+..+......+.|+++|+||.|+.+ ...+..+++..+++..++.++++||+++.|++++|+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD-QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch-hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999988776666899999999999865 4567788888899999999999999999999999999886
Q ss_pred H
Q 027985 176 E 176 (216)
Q Consensus 176 ~ 176 (216)
.
T Consensus 160 ~ 160 (161)
T cd04113 160 S 160 (161)
T ss_pred h
Confidence 5
No 56
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.3e-32 Score=194.55 Aligned_cols=160 Identities=39% Similarity=0.700 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||||++++....+...+.++.+ +.+...+.+++..+.+.|||+||++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777777665 445566778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++...+++..+++++++||++|.|++++|++|.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED-ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999998887653 34689999999999865 345666777788888888999999999999999999998
Q ss_pred HHH
Q 027985 175 REI 177 (216)
Q Consensus 175 ~~~ 177 (216)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 754
No 57
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.9e-33 Score=184.51 Aligned_cols=181 Identities=46% Similarity=0.794 Sum_probs=165.1
Q ss_pred cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (216)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (216)
|++..++-+|++|+|+.|+|||.|+.+|...++......+.+.++....+...++.++++||||+|++.+.+....+++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 34567899999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
+-++++|||+++.++|+.+..|+..++.....++-+++++||.|+. ..+++...++..|+.++.+.+.++|+++|+|+.
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~-~~R~VtflEAs~FaqEnel~flETSa~TGeNVE 160 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD-PEREVTFLEASRFAQENELMFLETSALTGENVE 160 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC-hhhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence 9999999999999999999999999999888888889999999994 478899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCC
Q 027985 168 QVFFSIAREIKQRLVESDSKAE 189 (216)
Q Consensus 168 ~l~~~l~~~~~~~~~~~~~~~~ 189 (216)
|.|-.....+..+...-.-+.+
T Consensus 161 EaFl~c~~tIl~kIE~GElDPe 182 (214)
T KOG0086|consen 161 EAFLKCARTILNKIESGELDPE 182 (214)
T ss_pred HHHHHHHHHHHHHHhhcCCCHH
Confidence 9999888888766554433333
No 58
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=6.4e-32 Score=193.68 Aligned_cols=163 Identities=42% Similarity=0.718 Sum_probs=144.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.+..+||+++|.+++|||||+++|.+..+.+.+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 35679999999999999999999999998887788887777777788888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNV 166 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 166 (216)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+. ...+..++++.+++..+. .++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGDYPYFETSAKDATNV 159 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCHHHHHHHHHHCCCCeEEEEECCCCCCH
Confidence 99999999999999999988776543 2468999999999985 356677888899888884 8999999999999
Q ss_pred HHHHHHHHHH
Q 027985 167 EQVFFSIARE 176 (216)
Q Consensus 167 ~~l~~~l~~~ 176 (216)
+++|+++++.
T Consensus 160 ~~~~~~~~~~ 169 (170)
T cd04116 160 AAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 59
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=4.5e-32 Score=193.38 Aligned_cols=161 Identities=37% Similarity=0.702 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||||+++++.+.+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998888777777665433 456777887889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
|.+++.+++.+.+|+..+.... ..+.|+++|+||+|+.+ ...+..++...+++..+++++++||++|.|++++|.+|.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh-ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999998887643 45789999999999965 344566677888888889999999999999999999998
Q ss_pred HHHH
Q 027985 175 REIK 178 (216)
Q Consensus 175 ~~~~ 178 (216)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 7653
No 60
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=8.3e-32 Score=191.42 Aligned_cols=160 Identities=32% Similarity=0.569 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||||+++|....+.+...++.+.+.+...+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988877777666666666777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
|.+++.++..+..|+..+..... +.|+++|+||+|+.. . .......+++..+++++++||++|.|++++|+.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~---~-~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDP---S-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCch---h-HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999998876543 689999999999842 1 233455666777889999999999999999999998
Q ss_pred HHHHH
Q 027985 176 EIKQR 180 (216)
Q Consensus 176 ~~~~~ 180 (216)
.+.++
T Consensus 156 ~~~~~ 160 (161)
T cd04124 156 LAVSY 160 (161)
T ss_pred HHHhc
Confidence 87654
No 61
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=7.2e-32 Score=191.86 Aligned_cols=159 Identities=36% Similarity=0.701 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
+||+++|.+++|||||+++|++..+...+.++.+.++....+.+. +..+.+.|||+||++.+..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998888888888877766667676 667899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (216)
|||+++++++..+..|+..+.... .+.|+++|+||+|+.. ...+..++++.+++..+++++++||+++.|++++|++|
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLD-QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 999999999999999998886544 4789999999999854 34566778888999999999999999999999999998
Q ss_pred HHH
Q 027985 174 ARE 176 (216)
Q Consensus 174 ~~~ 176 (216)
...
T Consensus 159 ~~~ 161 (162)
T cd04106 159 AEK 161 (162)
T ss_pred HHh
Confidence 753
No 62
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=8.7e-32 Score=191.25 Aligned_cols=160 Identities=42% Similarity=0.759 Sum_probs=144.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
.||+++|++++|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888888888888888888888789999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
|.+++++++.+..|+..+......+.|+++|+||+|+.+ ......++...+++..++.++++||+++.|++++|++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999988766555699999999999853 4556777888888888899999999999999999999987
Q ss_pred H
Q 027985 176 E 176 (216)
Q Consensus 176 ~ 176 (216)
.
T Consensus 160 ~ 160 (161)
T cd01861 160 A 160 (161)
T ss_pred h
Confidence 5
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=9.9e-32 Score=193.17 Aligned_cols=159 Identities=33% Similarity=0.619 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||+.+++.+.+...+.++.. ..+...+.+++..+.+.||||+|++.+..++..+++.+|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999999888888765 344456677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985 96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETSAKT 162 (216)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
|+++++++..+. .|+..+.... .+.|+++|+||+|+.+. ...+..++++.+++..+. .+++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999996 5877776654 47999999999999542 135778889999999984 999999999
Q ss_pred CCCHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIARE 176 (216)
Q Consensus 163 ~~~i~~l~~~l~~~ 176 (216)
|+|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998763
No 64
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.1e-31 Score=191.18 Aligned_cols=160 Identities=36% Similarity=0.646 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
++|+++|.+|+|||||++++..+.+...+.++.. +.+...+.+++..+.+.|||+||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999988777777654 455567778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
|+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ...+...+...+++..++.++++||++|.|++++|.++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES-EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988887653 35789999999999854 345566677888888888999999999999999999998
Q ss_pred HHH
Q 027985 175 REI 177 (216)
Q Consensus 175 ~~~ 177 (216)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 654
No 65
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.2e-31 Score=191.15 Aligned_cols=161 Identities=42% Similarity=0.719 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|++|+|||||+++|.+..+...+.++.+ +.+...+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888777766654 333456667777889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
|++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ......+++..+++..++.++++||++|.|++++|++|.
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES-ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 9999999999999988876543 34689999999999864 345667788888888889999999999999999999998
Q ss_pred HHHH
Q 027985 175 REIK 178 (216)
Q Consensus 175 ~~~~ 178 (216)
+.+.
T Consensus 159 ~~~~ 162 (164)
T smart00173 159 REIR 162 (164)
T ss_pred HHHh
Confidence 7764
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.6e-31 Score=190.74 Aligned_cols=159 Identities=33% Similarity=0.522 Sum_probs=135.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||||++++++..+...+.++....+ ...+..+...+.+.+||++|++.+..++..+++.++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999988777777665333 444566677789999999999998888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
|++++++++.+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..++...++.++++||++|+|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH-KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc-cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 99999999999999887766432 4689999999999954 3456677778888888899999999999999999999
Q ss_pred HHHH
Q 027985 173 IARE 176 (216)
Q Consensus 173 l~~~ 176 (216)
|...
T Consensus 160 l~~~ 163 (165)
T cd04140 160 LLNL 163 (165)
T ss_pred HHhc
Confidence 8753
No 67
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.1e-31 Score=189.33 Aligned_cols=159 Identities=38% Similarity=0.667 Sum_probs=137.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||||+++|++..+...+.++.+.. +...+.+++..+.+.+||++|++.+..++..+++.++++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 689999999999999999999988877777776533 3455677887788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
|+++..+++.+..|+..+.... ..+.|+++|+||+|+.+ ......++..+++..++.++++||++|.|++++|++|.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988887654 34789999999999865 45566778888888889999999999999999999998
Q ss_pred HHH
Q 027985 175 REI 177 (216)
Q Consensus 175 ~~~ 177 (216)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 654
No 68
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1.7e-31 Score=195.30 Aligned_cols=164 Identities=23% Similarity=0.391 Sum_probs=135.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------ccccccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYRG 87 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~ 87 (216)
+||+|+|.+|+|||||+++|.+..+...+.|+.+.+.+...+.+++..+.+.||||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998888888876766667778888889999999996543211 2234789
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCCC
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETSAKTN 163 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 163 (216)
+|++|+|||++++++++.+..|+..+.... ..++|+++|+||+|+.+ .+.+..++++.++. ..++.++++||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR-HRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc-cccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999999999999999998887654 35789999999999965 34456666666654 45789999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027985 164 FNVEQVFFSIAREIKQR 180 (216)
Q Consensus 164 ~~i~~l~~~l~~~~~~~ 180 (216)
.|++++|+.++..+..+
T Consensus 160 ~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 160 WHILLLFKELLISATTR 176 (198)
T ss_pred CCHHHHHHHHHHHhhcc
Confidence 99999999999877643
No 69
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-31 Score=176.47 Aligned_cols=180 Identities=47% Similarity=0.860 Sum_probs=163.8
Q ss_pred CCCCccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 027985 1 MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (216)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (216)
|+++| ....+.+|-+++|.-|+|||.|+..|+...|-.....+.+.++....++..+.+++++|||+.|++++...
T Consensus 1 m~~~p----ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfrav 76 (215)
T KOG0097|consen 1 MTAAP----YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV 76 (215)
T ss_pred CCCCc----cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHH
Confidence 45555 67789999999999999999999999999987777888888888899999999999999999999999999
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEec
Q 027985 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSA 160 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (216)
...+++.+.+.++|||++...++..+..|+........++..+++++||.|+ +.++.+..++++.|+++++..+.++||
T Consensus 77 trsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadl-e~qrdv~yeeak~faeengl~fle~sa 155 (215)
T KOG0097|consen 77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL-ESQRDVTYEEAKEFAEENGLMFLEASA 155 (215)
T ss_pred HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhh-hhcccCcHHHHHHHHhhcCeEEEEecc
Confidence 9999999999999999999999999999999988888778888999999999 458889999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985 161 KTNFNVEQVFFSIAREIKQRLVESD 185 (216)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~~~~~~ 185 (216)
++|+|+.+.|-...+.++++..+-.
T Consensus 156 ktg~nvedafle~akkiyqniqdgs 180 (215)
T KOG0097|consen 156 KTGQNVEDAFLETAKKIYQNIQDGS 180 (215)
T ss_pred cccCcHHHHHHHHHHHHHHhhhcCc
Confidence 9999999999888888887765543
No 70
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=3.6e-31 Score=188.47 Aligned_cols=162 Identities=48% Similarity=0.838 Sum_probs=144.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+|+|++++|||||+++|++..+.....++.+..+....+.+++..+.+.|||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998777777777667777888888889999999999998888888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
+|+++++++..+..|+..+........|+++++||+|+.+ ......++...+....++.++++||++|.|++++|++|.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES-KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999998877656789999999999864 345667778888888889999999999999999999998
Q ss_pred HHH
Q 027985 175 REI 177 (216)
Q Consensus 175 ~~~ 177 (216)
+.+
T Consensus 160 ~~l 162 (163)
T cd01860 160 KKL 162 (163)
T ss_pred HHh
Confidence 875
No 71
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=4.4e-31 Score=188.14 Aligned_cols=161 Identities=40% Similarity=0.638 Sum_probs=138.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+++|.+|+|||||++++++..+...+.++.+.. +.....+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999999999999988877766666533 344566788778999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (216)
||++++.++..+..|+..+.... ..+.|+++|+||+|+.. ...+..++...+++..++.++++||++|.|++++|++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH-QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc-cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999998887643 34689999999999854 34456667888888888999999999999999999999
Q ss_pred HHHH
Q 027985 174 AREI 177 (216)
Q Consensus 174 ~~~~ 177 (216)
...+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8764
No 72
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=6.4e-31 Score=188.48 Aligned_cols=162 Identities=47% Similarity=0.868 Sum_probs=142.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-cccccccccccEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILL 93 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~ 93 (216)
.++|+++|++|+|||||+++++...+...+.++.+.++....+.+++..+.+.|||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999998888888888878887888888888999999999998875 567888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC---CCCHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT---NFNVEQV 169 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~l 169 (216)
|||++++.++..+..|+..+.... ....|+++|+||+|+.. ...+..++++.+++..++.++++||++ +.+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE-QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh-hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 999999999999999998887654 35699999999999854 455677788888888889999999999 8899999
Q ss_pred HHHHHHHH
Q 027985 170 FFSIAREI 177 (216)
Q Consensus 170 ~~~l~~~~ 177 (216)
|..+.+.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99988765
No 73
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-33 Score=186.97 Aligned_cols=180 Identities=48% Similarity=0.882 Sum_probs=161.4
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC---------CeEEEEEEEeCCCcccccccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD---------GKRIKLQIWDTAGQERFRTIT 81 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~ 81 (216)
+.++-+|.+.+|.+|+|||+|+-+++...|......++++++..+.+.++ +..+.+++|||+|++++.++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 45688999999999999999999999999999999999999988877662 345889999999999999999
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEec
Q 027985 82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSA 160 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (216)
..|++++-+++++||+++.++|-++++|+..+..+. +.+..+|+++||+|+.+ .+.++.+++..++++.+++||++||
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED-QRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh-hhhhhHHHHHHHHHHhCCCeeeecc
Confidence 999999999999999999999999999999987655 45677899999999954 7889999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhcccCCCc
Q 027985 161 KTNFNVEQVFFSIAREIKQRLVESDSKAEPQ 191 (216)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~ 191 (216)
-+|.|+.+..+.|.+.++++..+.-.+.+-+
T Consensus 164 ~tg~Nv~kave~LldlvM~Rie~~v~~s~~p 194 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKRIEQCVEKSEIP 194 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999888766554443
No 74
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=4.7e-31 Score=192.76 Aligned_cols=156 Identities=28% Similarity=0.629 Sum_probs=137.8
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCCh
Q 027985 21 IGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE 100 (216)
Q Consensus 21 ~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 100 (216)
+|.+|+|||||+++|+...+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888888888888888888888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 101 SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 101 ~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
.++..+..|+..+.... .++|+++|+||+|+.. ..+..+. ..+++..++.+++|||++|+||+++|.+|...+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD--RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998765 4799999999999854 3344443 357777889999999999999999999999888643
No 75
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.1e-30 Score=185.53 Aligned_cols=161 Identities=40% Similarity=0.791 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||||+++|++..+.....++.+.......+...+..+.+.+||+||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887766666666666666777777789999999999988888988999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
|++++++++.+..|+..+......+.|+++|+||+|+.. ...+..+++..+.+..++.++++|+++++|+++++++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER-QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999998887766789999999999864 4456667778888888899999999999999999999987
Q ss_pred HH
Q 027985 176 EI 177 (216)
Q Consensus 176 ~~ 177 (216)
.+
T Consensus 160 ~~ 161 (162)
T cd04123 160 RM 161 (162)
T ss_pred Hh
Confidence 64
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1e-30 Score=187.62 Aligned_cols=164 Identities=44% Similarity=0.775 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888877788777777778888888889999999999988888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~ 170 (216)
|+.++++++.+..|...+..... .+.|+++|+||+|+.+ ......++.+.+.+..+ ..++++|+++|.|++++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 99999999999888877655432 3689999999999964 34556777788888877 799999999999999999
Q ss_pred HHHHHHHHHH
Q 027985 171 FSIAREIKQR 180 (216)
Q Consensus 171 ~~l~~~~~~~ 180 (216)
++|.+.+.+.
T Consensus 160 ~~i~~~~~~~ 169 (172)
T cd01862 160 ETIARKALEQ 169 (172)
T ss_pred HHHHHHHHhc
Confidence 9999988765
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.2e-30 Score=186.04 Aligned_cols=160 Identities=32% Similarity=0.634 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--CCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD--SFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+||+|+|++|+|||||+++|... .+...+.++.+.++....+..+ +..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 6777888888777776666664 56689999999999988888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+ ...+.....+.+....++.++++||+++.|++++|+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLAD-KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES 158 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence 9999999999999999998887764 4689999999999854 3445666667777777889999999999999999999
Q ss_pred HHHHH
Q 027985 173 IAREI 177 (216)
Q Consensus 173 l~~~~ 177 (216)
|.+.+
T Consensus 159 l~~~~ 163 (164)
T cd04101 159 LARAF 163 (164)
T ss_pred HHHHh
Confidence 98764
No 78
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1e-30 Score=190.62 Aligned_cols=159 Identities=30% Similarity=0.504 Sum_probs=129.0
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHhcCC-----CCCccccceee-EEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLL-RFSDDS-----FTTSFITTIGI-DFKIRT--------IELDGKRIKLQIWDTAGQERFRT 79 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 79 (216)
.+||+++|..|+|||+|+. ++.+.. +...+.|+.+. +.+... +.+++..+.+.||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 565543 34556677641 222222 25678889999999999875 3
Q ss_pred ccccccccccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------------CCCCC
Q 027985 80 ITTAYYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES------------------KRAVP 140 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------------~~~~~ 140 (216)
+...+++++|++|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+. ...+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556889999999999999999999997 5888887654 36899999999998541 36788
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHH
Q 027985 141 TAKGQELADEYGIKFFETSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (216)
.++++.+++.+++.|++|||++|+||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999998764
No 79
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=1e-30 Score=188.09 Aligned_cols=159 Identities=33% Similarity=0.632 Sum_probs=136.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEEC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (216)
|+|+|.+|+|||||+++|.+..+...+.++.... +...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 5899999999999999999999988777776544 345667888888999999999999998999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEEecCCCC
Q 027985 98 TDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFETSAKTNF 164 (216)
Q Consensus 98 ~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (216)
+++++++.+. .|+..+..... +.|+++|+||+|+.... ..+..+++..+++..+. .++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 58888876544 79999999999985421 23667788889999986 99999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREIK 178 (216)
Q Consensus 165 ~i~~l~~~l~~~~~ 178 (216)
|++++|+.+.+.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=2.5e-30 Score=183.73 Aligned_cols=159 Identities=51% Similarity=0.922 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777788777777777778887789999999999998888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
|.+++.+++.+..|+..+..+. ..+.|+++|+||+|+.+ .....++...++...++.++++|+++|+|++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN--REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc--cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999998887764 45789999999999863 45566788888888899999999999999999999987
Q ss_pred HH
Q 027985 175 RE 176 (216)
Q Consensus 175 ~~ 176 (216)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 65
No 81
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=1.4e-30 Score=184.25 Aligned_cols=154 Identities=24% Similarity=0.404 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|+.|+|||||+.+++...+...+.++. ..+...+.+++..+.+.|||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~--~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG--GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc--cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 589999999999999999999888866655542 23346678888888999999999864 24567899999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDE-SKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~ 172 (216)
|++++.+++.+..|+..+..... .+.|+++|+||.|+.. ..+.+..++++.+++..+ +.|++|||++|+||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999877642 5689999999999853 356678888888988764 89999999999999999999
Q ss_pred HHHH
Q 027985 173 IARE 176 (216)
Q Consensus 173 l~~~ 176 (216)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 82
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=2.2e-30 Score=195.06 Aligned_cols=161 Identities=26% Similarity=0.433 Sum_probs=136.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+|+|.+|+|||||+++|++..+...+.++.+ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988877777765 556667788888899999999999988888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-hCCcEEEEecCCCCC
Q 027985 96 DVTDESSFNNIRNWMRNIDQH---------AADNVNKILVGNKADMDESKRAVPTAKGQELADE-YGIKFFETSAKTNFN 165 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~ 165 (216)
|+++.++++.+..|+..+... ...+.|+++|+||+|+.. ...+..+++..+... .++.++++||++|.|
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~-~~~v~~~ei~~~~~~~~~~~~~evSAktg~g 158 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF-PREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh-ccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence 999999999999998888653 224689999999999964 345667777776654 357899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIK 178 (216)
Q Consensus 166 i~~l~~~l~~~~~ 178 (216)
++++|++|...+.
T Consensus 159 I~elf~~L~~~~~ 171 (247)
T cd04143 159 LDEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998653
No 83
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=3.9e-30 Score=185.08 Aligned_cols=160 Identities=31% Similarity=0.590 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|++|+|||||+++|....+...+.++.. +.+...+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988777766654 334446678888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985 96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFETSAKT 162 (216)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
|.+++.+++.+. .|+..+... ..+.|+++|+||+|+.+.. ..+..++++.+++..++ .++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999986 577777655 5579999999999985432 25667888889988886 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAREI 177 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (216)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 84
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=6.7e-30 Score=182.96 Aligned_cols=164 Identities=49% Similarity=0.874 Sum_probs=143.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+++|++|+|||||++++....+...+.++.+.+.....+.+++..+.+.+||+||+..+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988887777777777777778888888889999999999988888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
+|||..++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..+..+.+.+.....++++||++|.|++++|++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 999999999999999999888776666789999999999864 4456666777787777789999999999999999999
Q ss_pred HHHHH
Q 027985 173 IAREI 177 (216)
Q Consensus 173 l~~~~ 177 (216)
|.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98754
No 85
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.8e-30 Score=185.87 Aligned_cols=163 Identities=23% Similarity=0.319 Sum_probs=138.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.+.+||+++|.+|+|||||+++|++..+. ..+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46899999999999999999999999988 78888887777767778888878999999999998888888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQVF 170 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~ 170 (216)
++|||++++++++.+..|+..+... .+.|+++|+||+|+.+. ......+.+.+++.+++ .++++||++++|++++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQ-QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF 158 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEccccccc-ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence 9999999999999998888765332 36899999999998542 22333445677777776 47999999999999999
Q ss_pred HHHHHHHH
Q 027985 171 FSIAREIK 178 (216)
Q Consensus 171 ~~l~~~~~ 178 (216)
+.|.+.+.
T Consensus 159 ~~l~~~~~ 166 (169)
T cd01892 159 TKLATAAQ 166 (169)
T ss_pred HHHHHHhh
Confidence 99988764
No 86
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=5.3e-30 Score=184.25 Aligned_cols=158 Identities=32% Similarity=0.595 Sum_probs=135.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||||++++.+..+...+.++. .+.+...+.+++..+.+.|||+||++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988887777765 3455556778887889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985 96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETSAKT 162 (216)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
|++++++++.+. .|+..+.... .+.|+++|+||.|+... .+.+..+++..+++..+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 6877776543 36899999999998542 356777889999999887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAR 175 (216)
Q Consensus 163 ~~~i~~l~~~l~~ 175 (216)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998753
No 87
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=4.2e-30 Score=181.67 Aligned_cols=158 Identities=57% Similarity=0.986 Sum_probs=142.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888887789999999999988888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
|.+++++++.+..|+..+........|+++|+||+|+.. ......++.+.+....++.++++|++++.|++++|++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLED-QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccc-cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999999887656799999999999852 355667888888888889999999999999999999986
No 88
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=7e-30 Score=182.77 Aligned_cols=161 Identities=38% Similarity=0.681 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
++|+++|.+|+|||||+++|.++.+...+.++.+.. +...+..++..+.+.+||+||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 789999999999999999999998877777776533 4566678888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFNVEQVFFSI 173 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l 173 (216)
|.+++++++.+..|...+.... ..+.|+++++||.|+.+ ......++...+++..+ ++++++||+++.|++++|.++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED-DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999988886543 34789999999999854 34556677777888877 789999999999999999999
Q ss_pred HHHHH
Q 027985 174 AREIK 178 (216)
Q Consensus 174 ~~~~~ 178 (216)
...+.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 87654
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=6.8e-30 Score=190.05 Aligned_cols=163 Identities=29% Similarity=0.448 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc-cccEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR-GAMGILL 93 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~ 93 (216)
+||+++|.+|+|||||+++|+.+.+. ..+.++.+.+++...+.+++..+.+.|||++|++. .....+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888775 55666655466777788888888999999999872 23344566 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++.+.++...++.++++||+++.|++++|++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR-SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999999998887654 34789999999999865 3456677778888888899999999999999999999
Q ss_pred HHHHHHHHH
Q 027985 173 IAREIKQRL 181 (216)
Q Consensus 173 l~~~~~~~~ 181 (216)
|.+.+....
T Consensus 158 l~~~~~~~~ 166 (221)
T cd04148 158 IVRQIRLRR 166 (221)
T ss_pred HHHHHHhhh
Confidence 998886443
No 90
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=3e-30 Score=184.17 Aligned_cols=160 Identities=38% Similarity=0.596 Sum_probs=133.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-cccccccccccccEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~ 95 (216)
||+|+|++|+|||||+++++...+...+.++.... +...+.+++..+.+.|||+||+.. .......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 58999999999999999999888876666665333 345567788888999999999885 3445667889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC-CHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF-NVEQVFFS 172 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~ 172 (216)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+++. |++++|+.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH-YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH-hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence 9999999999999988887654 34799999999999854 35567788888898889999999999994 99999999
Q ss_pred HHHHHH
Q 027985 173 IAREIK 178 (216)
Q Consensus 173 l~~~~~ 178 (216)
|.+.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 987653
No 91
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.4e-29 Score=185.70 Aligned_cols=161 Identities=32% Similarity=0.507 Sum_probs=133.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+++|.+|+|||||+++|+...+...+.++.. +.....+.+.+..+.+.|||+||+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888776666553 4455567778877899999999999888888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 97 VTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
++++.+++.+..|+..+..... .+.|+++|+||+|+.+....+..+....... ..++.++++||++|.|++++|++|.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888876553 4699999999999865444455544444433 4457899999999999999999999
Q ss_pred HHHH
Q 027985 175 REIK 178 (216)
Q Consensus 175 ~~~~ 178 (216)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8775
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=3e-29 Score=178.55 Aligned_cols=161 Identities=40% Similarity=0.659 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|++|+|||||+++++...+...+.++... .+...+.+++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999998887766666543 34455677878889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
|+.++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...........+.+..+++++++||++++|++++|++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988887753 34799999999999854 234566677778888889999999999999999999998
Q ss_pred HHHH
Q 027985 175 REIK 178 (216)
Q Consensus 175 ~~~~ 178 (216)
+.+.
T Consensus 159 ~~~~ 162 (164)
T cd04139 159 REIR 162 (164)
T ss_pred HHHH
Confidence 8765
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3e-29 Score=177.81 Aligned_cols=158 Identities=39% Similarity=0.687 Sum_probs=137.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+|+|++|+|||||+++|++..+...+.++.. +.....+..++..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777666655 5555667777777899999999999888888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 97 VTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
.++++++..+..|+..+..... ...|+++|+||+|+.+ ......+.+..+....+.+++++|++++.|++++|++|.+
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN-ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc-cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 9999999999999988877654 5799999999999865 3556677888888888899999999999999999999987
Q ss_pred H
Q 027985 176 E 176 (216)
Q Consensus 176 ~ 176 (216)
.
T Consensus 159 ~ 159 (160)
T cd00876 159 E 159 (160)
T ss_pred h
Confidence 5
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=9.5e-29 Score=177.99 Aligned_cols=160 Identities=35% Similarity=0.668 Sum_probs=132.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
.||+|+|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.|||++|++.+...+...++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 6899999999999999999999998877777765443 345677888889999999999998888888899999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985 96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFETSAKT 162 (216)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
|++++++++.+. .|+..+.... .+.|+++|+||+|+.+.. ..+...+.+.+++..+. .+++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999885 4777776543 368999999999985421 23445677777877774 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAREI 177 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (216)
|.|++++|.+|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998654
No 95
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.1e-28 Score=179.53 Aligned_cols=161 Identities=34% Similarity=0.585 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
.||+|+|++|+|||||+++|....+...+.++.... +...+.+++..+.+.+||++|++.+......+++.++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFEN-YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce-EEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 589999999999999999999877776666665433 3445677777788999999999888777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC---------CCCCCHHHHHHHHHHhCC-cEEEEecCCCC
Q 027985 96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES---------KRAVPTAKGQELADEYGI-KFFETSAKTNF 164 (216)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (216)
|+++.++++.+. .|+..+..... ..|+++|+||+|+.+. ...+..++.+.+++..+. .+|++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999986 58888876554 6999999999998432 234556778888888885 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREIK 178 (216)
Q Consensus 165 ~i~~l~~~l~~~~~ 178 (216)
|++++|+++.+.+.
T Consensus 160 ~v~~~f~~l~~~~~ 173 (187)
T cd04129 160 GVDDVFEAATRAAL 173 (187)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998774
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=1.8e-28 Score=177.36 Aligned_cols=163 Identities=36% Similarity=0.595 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
.||+|+|.+|+|||||+++|++..+...+.++....+ ...+..++..+.+.+||+||++++...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888766666654333 455667777788999999999998888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
|.++..+++.+..|+..+.... ..+.|+++|+||+|+.. ...+..++...+++..++.++++||++++|+.++|++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT-QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh-cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999988887654 34689999999999854 345566677778888888999999999999999999999
Q ss_pred HHHHHH
Q 027985 175 REIKQR 180 (216)
Q Consensus 175 ~~~~~~ 180 (216)
+.+...
T Consensus 160 ~~~~~~ 165 (180)
T cd04137 160 EEIEKV 165 (180)
T ss_pred HHHHHh
Confidence 887643
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=3.3e-29 Score=179.11 Aligned_cols=154 Identities=21% Similarity=0.382 Sum_probs=121.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+++|.+++|||||+++|....+.. +.|+.+.+.. .+... .+.+.+||+||++.+...+..+++.+|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999998776643 4566654443 33343 3789999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----hCCcEEEEecCCCCCHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE-----YGIKFFETSAKTNFNVE 167 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 167 (216)
|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ .+..++++.+... ..+.++++||++|+|++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 99999999999988887766543 234689999999999854 2455566655421 22468999999999999
Q ss_pred HHHHHHHH
Q 027985 168 QVFFSIAR 175 (216)
Q Consensus 168 ~l~~~l~~ 175 (216)
++|+||.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999865
No 98
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2.9e-28 Score=174.72 Aligned_cols=158 Identities=35% Similarity=0.670 Sum_probs=130.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|++|+|||||+++|++..+...+.++.. +.....+..++..+.+.+||+||++.+.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999988666666654 334455677788889999999999988888888889999999999
Q ss_pred ECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCC----------CCCHHHHHHHHHHhCC-cEEEEecCCC
Q 027985 96 DVTDESSFNNIRN-WMRNIDQHAADNVNKILVGNKADMDESKR----------AVPTAKGQELADEYGI-KFFETSAKTN 163 (216)
Q Consensus 96 d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (216)
|.+++.++..... |+..+..... +.|+++|+||+|+.+... .+..++...+....++ .++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999988887654 6666665543 799999999999865332 3456777888888887 9999999999
Q ss_pred CCHHHHHHHHHH
Q 027985 164 FNVEQVFFSIAR 175 (216)
Q Consensus 164 ~~i~~l~~~l~~ 175 (216)
+|+.++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 99
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=9.1e-29 Score=177.12 Aligned_cols=156 Identities=20% Similarity=0.388 Sum_probs=125.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+++|.+++|||||+++|.+..+.. +.++.+.+. ..+...+ +.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~--~~~~~~~--~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV--ETVEYKN--LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE--EEEEECC--EEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886643 566655444 3444544 789999999999888889899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC------CcEEEEecCCCCCHHHH
Q 027985 97 VTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG------IKFFETSAKTNFNVEQV 169 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l 169 (216)
+++++++..+..|+..+.... ..+.|+++|+||+|+.+ .+..++++.++...+ +.++++||++|.|++++
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 999999999999988886532 23589999999999853 355666666654222 26789999999999999
Q ss_pred HHHHHHHHHHH
Q 027985 170 FFSIAREIKQR 180 (216)
Q Consensus 170 ~~~l~~~~~~~ 180 (216)
|+||.+.+.+.
T Consensus 153 f~~l~~~~~~~ 163 (169)
T cd04158 153 LDWLSRQLVAA 163 (169)
T ss_pred HHHHHHHHhhc
Confidence 99998876543
No 100
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.2e-28 Score=178.07 Aligned_cols=159 Identities=19% Similarity=0.360 Sum_probs=122.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+..+||+++|.++||||||+++|....+. .+.|+.+.+. ..+...+ +.+.|||+||++.+..+|..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 44589999999999999999999877664 3566666443 3445544 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-----CcEEEEecCCCCCH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-----IKFFETSAKTNFNV 166 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i 166 (216)
+|||+++++++..+..++..+... ...+.|++||+||+|+.+. ...+++........ +.++++||++|+|+
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv 166 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCceEEEeccCCCCCCH
Confidence 999999999999888777666432 2246899999999998542 23333333222111 23568999999999
Q ss_pred HHHHHHHHHHHHH
Q 027985 167 EQVFFSIAREIKQ 179 (216)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (216)
+++|+||.+.+..
T Consensus 167 ~e~~~~l~~~~~~ 179 (181)
T PLN00223 167 YEGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888764
No 101
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=1.9e-28 Score=177.59 Aligned_cols=164 Identities=21% Similarity=0.371 Sum_probs=127.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
.+||+++|.+|+|||||++++....+... .++.+.+.....+.. ++..+.+.+||+||++.+..+|..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998877544 565555554444443 3345799999999999888889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH--h----CCcEEEEecCCCCCH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE--Y----GIKFFETSAKTNFNV 166 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~----~~~~~~~Sa~~~~~i 166 (216)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....+++..+... . ++.++++||++|+|+
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 999999999998888887776543 34689999999999853 2334444444321 1 246889999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027985 167 EQVFFSIAREIKQRLV 182 (216)
Q Consensus 167 ~~l~~~l~~~~~~~~~ 182 (216)
+++|++|.+.+.+...
T Consensus 159 ~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 159 QEGLEKLYEMILKRRK 174 (183)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988864443
No 102
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.4e-30 Score=170.25 Aligned_cols=165 Identities=50% Similarity=0.930 Sum_probs=150.9
Q ss_pred EEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEEC
Q 027985 19 LLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (216)
Q Consensus 19 ~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (216)
+++|.+++|||.|+-++...-| ......++++++....+..++.++++++|||.|++++.+....+++++|.++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 3789999999999988877666 556788899999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985 98 TDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 98 ~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
.+..+|++.+.|+..+..+..+.+.+.+++||+|+.+ ++.+..++.+.+++..++++.++||++|.|++..|-.|.+.+
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~-er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH-ERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch-hhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence 9999999999999999999888888999999999965 567888999999999999999999999999999999999988
Q ss_pred HHHHhhh
Q 027985 178 KQRLVES 184 (216)
Q Consensus 178 ~~~~~~~ 184 (216)
.+..-..
T Consensus 160 ~k~~~~~ 166 (192)
T KOG0083|consen 160 KKLKMGA 166 (192)
T ss_pred HHhccCC
Confidence 7655443
No 103
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=4.3e-29 Score=179.73 Aligned_cols=156 Identities=19% Similarity=0.380 Sum_probs=120.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..+||+++|.+|+|||||+++|....+. .+.|+.+.++. .+...+ +.+.+||+||++.+..++..+++++|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYKN--ISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4599999999999999999999766663 35566654443 344443 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 167 (216)
|||++++++++.+.+|+..+... ...+.|++||+||.|+.+. ...+++..... ...+.++++||++|+|++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA---MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC---CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 99999999999998888777543 2346899999999998542 22233222221 112357789999999999
Q ss_pred HHHHHHHHHH
Q 027985 168 QVFFSIAREI 177 (216)
Q Consensus 168 ~l~~~l~~~~ 177 (216)
++|+||.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 104
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=2e-28 Score=176.08 Aligned_cols=157 Identities=21% Similarity=0.380 Sum_probs=123.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
..+..++|+++|++|+|||||+++|.+..+. .+.++.+ +....+.+++ +.+.+||+||++.+...+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 3456689999999999999999999987553 3445544 3344555654 789999999999888888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCC
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNF 164 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 164 (216)
+++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+. ...++++.+.+ ..++.++++||++|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA---LSEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC---CCHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 99999999999999988888777542 2357899999999998542 24445555443 234689999999999
Q ss_pred CHHHHHHHHHH
Q 027985 165 NVEQVFFSIAR 175 (216)
Q Consensus 165 ~i~~l~~~l~~ 175 (216)
|++++|++|.+
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=2.8e-28 Score=172.84 Aligned_cols=152 Identities=20% Similarity=0.405 Sum_probs=117.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+++|||||++++..+.+. .+.|+.+.+. ..+.... +.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877775 3566665443 3344443 78999999999999889999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHH-HHHHHH----HhCCcEEEEecCCCCCHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAK-GQELAD----EYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~----~~~~~~~~~Sa~~~~~i~~l 169 (216)
|++++.++..+.+|+..+... .....|+++++||+|+.+. ...++ ...+.. ...+.++++||++|+|++++
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence 999999999998887776432 2235899999999998542 22222 222211 11245789999999999999
Q ss_pred HHHHHH
Q 027985 170 FFSIAR 175 (216)
Q Consensus 170 ~~~l~~ 175 (216)
|++|.+
T Consensus 153 ~~~l~~ 158 (159)
T cd04150 153 LDWLSN 158 (159)
T ss_pred HHHHhc
Confidence 999864
No 106
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=2.8e-29 Score=178.81 Aligned_cols=153 Identities=20% Similarity=0.337 Sum_probs=123.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
.|+++|.+|+|||||+++|.+..+...+.|+.+... .. ++...+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~--i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VA--IPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EE--EeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999888777777776432 23 33344799999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCH----HHHHHHHHHhCCcEEEEecCC------CCCH
Q 027985 97 VTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT----AKGQELADEYGIKFFETSAKT------NFNV 166 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i 166 (216)
.+++.++..++.|+..+.... .+.|+++|+||+|+.... .+.. ..+..++++.++.++++||++ ++|+
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v 154 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAAR-SVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV 154 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCC-CHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence 999999999999888876543 479999999999985422 1111 123455556678899999998 9999
Q ss_pred HHHHHHHHH
Q 027985 167 EQVFFSIAR 175 (216)
Q Consensus 167 ~~l~~~l~~ 175 (216)
+++|+.++.
T Consensus 155 ~~~~~~~~~ 163 (164)
T cd04162 155 KDLLSQLIN 163 (164)
T ss_pred HHHHHHHhc
Confidence 999998764
No 107
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=6.6e-28 Score=174.88 Aligned_cols=163 Identities=40% Similarity=0.678 Sum_probs=149.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
..+|+++|.+|+|||+|..+|....|...+.|+.. +.+...+.+++..+.+.|+||+|++++..+...+++.++++++|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 57999999999999999999999999999999987 67778888999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (216)
|++++..+|+.+..++..+.. +....+|+++|+||+|+.. .+.+..++++.++..+++.++++||+...+++++|..|
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~-~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER-ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh-ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999998844 3345689999999999965 47899999999999999999999999999999999999
Q ss_pred HHHHHH
Q 027985 174 AREIKQ 179 (216)
Q Consensus 174 ~~~~~~ 179 (216)
...+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 998876
No 108
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=2.1e-27 Score=176.42 Aligned_cols=166 Identities=31% Similarity=0.613 Sum_probs=142.6
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
......+||+++|++|+|||||+++++.+.+...+.++.+.++....+..+++.+.+.+||++|++.+..++..+++.++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 45566799999999999999999999888888888888888887777777888899999999999988888888999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
++++|||+++..++..+..|+..+.... .+.|+++|+||+|+.+ .....+. ..+.+..++.++++|+++|.|++++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~--~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD--RQVKARQ-ITFHRKKNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999999998887654 4689999999999854 2233333 3566777889999999999999999
Q ss_pred HHHHHHHHHH
Q 027985 170 FFSIAREIKQ 179 (216)
Q Consensus 170 ~~~l~~~~~~ 179 (216)
|.+|.+.+..
T Consensus 160 f~~ia~~l~~ 169 (215)
T PTZ00132 160 FLWLARRLTN 169 (215)
T ss_pred HHHHHHHHhh
Confidence 9999988864
No 109
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.2e-27 Score=170.92 Aligned_cols=160 Identities=29% Similarity=0.445 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+||+++|.+|+|||||+++|.++.+...+.++. ........+++..+.+.+||+||.+.+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999988865533322 122233445566689999999999877777777789999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC-CHHHHHHHHHHhC--CcEEEEecCCCCCHHHHHH
Q 027985 96 DVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKRAV-PTAKGQELADEYG--IKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~ 171 (216)
|++++.+++.+. .|+..+..... +.|+++|+||+|+.+..... ..+.+..+..... ..++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999986 57676665543 78999999999996533211 1233444444443 3799999999999999999
Q ss_pred HHHHHHH
Q 027985 172 SIAREIK 178 (216)
Q Consensus 172 ~l~~~~~ 178 (216)
.+...+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9887764
No 110
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=4.4e-30 Score=176.07 Aligned_cols=172 Identities=35% Similarity=0.633 Sum_probs=159.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
+-+..+|++|+|..++||||+|+++|.+.|...+..+.+.++....+.+.++.+.+.+||++|+++++.+...+++.+.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 45568999999999999999999999999999999999999988888888888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
.++||+-+|.++|+....|++.+..... .+|.++|-||+|+.+ ...+...+++.+++.+++.++-+|++...|+..+|
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlve-ds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVE-DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhH-hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence 9999999999999999999999988765 699999999999976 56788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 027985 171 FSIAREIKQRLVES 184 (216)
Q Consensus 171 ~~l~~~~~~~~~~~ 184 (216)
.+|++.+.+...++
T Consensus 174 ~YLaeK~~q~~kq~ 187 (246)
T KOG4252|consen 174 AYLAEKLTQQKKQS 187 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877763
No 111
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=9.3e-28 Score=173.69 Aligned_cols=157 Identities=22% Similarity=0.396 Sum_probs=120.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+++|++++|||||++++..+.+.. +.|+.+.++ ..+...+ +.+.+||+||++.+..++..+++.+|++|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV--ETVEYKN--LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 5899999999999999999998776654 456655443 3444444 7899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----hCCcEEEEecCCCCCHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE-----YGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~ 168 (216)
+|+++++++..+..++..+... .....|++||+||.|+.+ ....+++...... ..+.++++||++|+|+++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN---AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC---CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 9999999999988777766432 223589999999999854 2222232222111 113467899999999999
Q ss_pred HHHHHHHHHHH
Q 027985 169 VFFSIAREIKQ 179 (216)
Q Consensus 169 l~~~l~~~~~~ 179 (216)
+|++|.+.+.+
T Consensus 169 ~~~~l~~~i~~ 179 (182)
T PTZ00133 169 GLDWLSANIKK 179 (182)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=2.3e-28 Score=173.79 Aligned_cols=152 Identities=18% Similarity=0.373 Sum_probs=116.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
+|+++|.+|+|||||+++|.+... ...+.++.+... ..+...+ +.+.+||+||++.+..++..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKGN--LSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEECC--EEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 445566665433 2333333 78999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 167 (216)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++...... ...+.++++||++|+|++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL---TAVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC---CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 9999999988888877775432 2478999999999985422 2222222211 112468999999999999
Q ss_pred HHHHHHHH
Q 027985 168 QVFFSIAR 175 (216)
Q Consensus 168 ~l~~~l~~ 175 (216)
++|++|.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999864
No 113
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=4.1e-28 Score=172.33 Aligned_cols=165 Identities=36% Similarity=0.639 Sum_probs=147.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
...+|++|+|...+|||+|+..+..+.|+..+.|+.. +-+...+.++ +..+.+.+|||+|+++|+.++...+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999997 6677778885 9999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhC-CcEEEE
Q 027985 92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYG-IKFFET 158 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~ 158 (216)
++||++.++++++++. .|+.++..++ ++.|+|+|++|.|+.++ ...+..++...+++.+| ..|++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 9999999999999975 6888888776 47999999999999743 24578899999999999 589999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 027985 159 SAKTNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~ 179 (216)
||++..|++++|+..+.....
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhc
Confidence 999999999999998877753
No 114
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1.1e-26 Score=166.79 Aligned_cols=145 Identities=39% Similarity=0.681 Sum_probs=127.4
Q ss_pred CCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhc
Q 027985 38 DSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA 117 (216)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~ 117 (216)
..|.+.+.++.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++++++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35677888999888888888899989999999999999999999999999999999999999999999999999887765
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027985 118 ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 118 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 183 (216)
....|+++|+||+|+.+ ...+..+++..++...++.++++||++|+|++++|++|.+.+.+....
T Consensus 83 ~~~~piilVgNK~DL~~-~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGD-LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 55789999999999964 345677888888888888999999999999999999999998764433
No 115
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=6.3e-27 Score=170.94 Aligned_cols=148 Identities=21% Similarity=0.394 Sum_probs=124.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-----CeEEEEEEEeCCCccccccccccccccccE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-----GKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
+||+++|..++|||||+++|++..+...+.++.+.++....+.++ +..+.+.|||++|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877776666663 456899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCCCCCCHH----HHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHA-------------------ADNVNKILVGNKADMDESKRAVPTA----KGQEL 147 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~ 147 (216)
+|+|||++++.+++.+..|+..+.... ..+.|+++|+||.|+.+. +.+..+ ....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~-r~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE-KESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh-cccchHHHhhHhhhH
Confidence 999999999999999999999986642 246899999999999652 233332 24567
Q ss_pred HHHhCCcEEEEecCCCC
Q 027985 148 ADEYGIKFFETSAKTNF 164 (216)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~ 164 (216)
+++.+++.++.++.++.
T Consensus 160 a~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 160 AEQGNAEEINLNCTNGR 176 (202)
T ss_pred HHhcCCceEEEecCCcc
Confidence 88899999999988764
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=5.2e-27 Score=168.78 Aligned_cols=154 Identities=23% Similarity=0.329 Sum_probs=119.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+++|.+|+|||||+++++...+.. ..++.+.++ ..+..++ +.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999998877754 355554333 3445554 789999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHH----HHhCCcEEEEecCCCCCHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKG-QELA----DEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~i~ 167 (216)
|+|+++++++.....++..+.... ..+.|+++++||+|+.+ ....+++ +.+. +..++.++++||++|+|++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~---~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~ 165 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG---AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP 165 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC---CCCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence 999999998888887777664432 24689999999999854 2233332 2221 2234578999999999999
Q ss_pred HHHHHHHH
Q 027985 168 QVFFSIAR 175 (216)
Q Consensus 168 ~l~~~l~~ 175 (216)
++|++|.+
T Consensus 166 e~~~~l~~ 173 (174)
T cd04153 166 EGLDWIAS 173 (174)
T ss_pred HHHHHHhc
Confidence 99999864
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=2.4e-27 Score=168.27 Aligned_cols=152 Identities=26% Similarity=0.461 Sum_probs=116.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
+|+++|.+|+|||||+++|.+..+... .++.+.+. ..+... ..+.+.+||+||+..+...+..+++.+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999998887543 45544333 334443 33789999999999888888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH------HHhCCcEEEEecCCCCCHHHH
Q 027985 97 VTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELA------DEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~l 169 (216)
+.++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++.... ...++.++++||++|+|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence 999999998888877775432 247899999999998531 2223332221 112346899999999999999
Q ss_pred HHHHHH
Q 027985 170 FFSIAR 175 (216)
Q Consensus 170 ~~~l~~ 175 (216)
|++|.+
T Consensus 154 ~~~i~~ 159 (160)
T cd04156 154 FRKLAS 159 (160)
T ss_pred HHHHhc
Confidence 999864
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=3.2e-27 Score=168.77 Aligned_cols=154 Identities=21% Similarity=0.342 Sum_probs=118.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
+|+++|.+++|||||+++|.+. +...+.++.+.. ...+..++ +.+.+||+||+..+..++..+++.+|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999977 555666766543 34555554 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHH---HHHHHHHHhC--CcEEEEecCCC------C
Q 027985 97 VTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTA---KGQELADEYG--IKFFETSAKTN------F 164 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~------~ 164 (216)
++++.+++.+..|+..+.... ..+.|+++|+||.|+.+........ .+..+++..+ +.++++||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999999988876542 2478999999999985532111111 1122232222 46788999998 8
Q ss_pred CHHHHHHHHHH
Q 027985 165 NVEQVFFSIAR 175 (216)
Q Consensus 165 ~i~~l~~~l~~ 175 (216)
|+++.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=1e-26 Score=169.56 Aligned_cols=155 Identities=22% Similarity=0.347 Sum_probs=123.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
...+|+++|++|+|||||++++.+..+. .+.++.+ .....+.+++ +.+.+||+||+..+...+..+++.+|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~--~~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLH--PTSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccC--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999987764 3444443 2334556665 689999999998888888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH----------------hCCcEE
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE----------------YGIKFF 156 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 156 (216)
|+|+++.+++.....|+..+.... ..+.|+++++||+|+.. .+..++++.+... ..+.++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 999999988888888877775533 24689999999999853 4455666665542 124689
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 027985 157 ETSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~ 176 (216)
+|||++|+|++++|+||.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999765
No 120
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=3.1e-26 Score=164.61 Aligned_cols=158 Identities=29% Similarity=0.501 Sum_probs=127.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+++|..+||||||++++....... ..||.+ +....+.+.+ +.+.+||.+|+..+...|..++..+|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 3677999999999999999999998765433 555555 5556677776 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH------HhCCcEEEEecCCCC
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD------EYGIKFFETSAKTNF 164 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~ 164 (216)
|||+|.++.+.+......+..+... ...+.|++|++||.|+.+ ....+++..... ...+.++.|||.+|+
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~---~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~ 162 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD---AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE 162 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT---SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC---cchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence 9999999999888888877776553 234789999999999854 344455554432 123568999999999
Q ss_pred CHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREI 177 (216)
Q Consensus 165 ~i~~l~~~l~~~~ 177 (216)
|+.+.++||.+.+
T Consensus 163 Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 163 GVDEGLEWLIEQI 175 (175)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC
Confidence 9999999998764
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=3e-27 Score=167.46 Aligned_cols=151 Identities=24% Similarity=0.383 Sum_probs=112.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+++|.+++|||||+++|....+.. ..++.+.+. ..+...+ +.+.+||+||++.+..++..+++.+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYKN--LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776643 345544333 3344443 789999999999988889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCHHHHH
Q 027985 97 VTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
++++.++.....++..+.. ....+.|+++|+||+|+.+.. ...++..... ..+..++++||++|.|++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence 9998888777666654433 222468999999999985421 2222221111 112469999999999999999
Q ss_pred HHHHH
Q 027985 171 FSIAR 175 (216)
Q Consensus 171 ~~l~~ 175 (216)
++|.+
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99864
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=1.2e-26 Score=165.77 Aligned_cols=152 Identities=23% Similarity=0.406 Sum_probs=116.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
+|+|+|++|+|||||+++|..... ...+.++.+.+ ...+.+++ ..+.+||+||++.+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLN--IGTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccc--eEEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 22334444433 34455654 689999999999998888899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-------hCCcEEEEecCC
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE-------YGIKFFETSAKT 162 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~ 162 (216)
+++|+|+.+++++.....|+..+.... ..+.|+++|+||+|+.+ ....+++..+... .++.++++||++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD---ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc---CCCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 999999999888888888877765532 34789999999999854 2334444444332 235799999999
Q ss_pred CCCHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAR 175 (216)
Q Consensus 163 ~~~i~~l~~~l~~ 175 (216)
|+|++++++||.+
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999864
No 123
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=1.7e-26 Score=156.21 Aligned_cols=167 Identities=20% Similarity=0.361 Sum_probs=133.0
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
+.++..++|+++|..||||||++++|.+... ....|+.+ +...++.+++ +.++|||.+|+......|..+|..+|
T Consensus 11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestd 85 (185)
T KOG0073|consen 11 KLKEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTD 85 (185)
T ss_pred HhhhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccC
Confidence 3345589999999999999999999998884 33345544 6777777876 79999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCC---HHHHHHHHHHhCCcEEEEecCCCCC
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVP---TAKGQELADEYGIKFFETSAKTNFN 165 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (216)
++|+|+|..|+..++.....+..+.. ..-.+.|+++++||.|+...-.... ...+..+++...++++.||+.+|++
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~ 165 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGED 165 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence 99999999999888887766655532 2223689999999999963222111 1234455567779999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIKQRL 181 (216)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (216)
+.+-+.||.+.+.++.
T Consensus 166 l~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 166 LLEGIDWLCDDLMSRL 181 (185)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998743
No 124
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=4.1e-25 Score=168.97 Aligned_cols=143 Identities=24% Similarity=0.475 Sum_probs=122.6
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECC-------------eEEEEEEEeCCCcccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-------------KRIKLQIWDTAGQERF 77 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~ 77 (216)
.....+||+|+|..|+|||||+++|++..+...+.++.+.++....+.+++ ..+.+.|||++|++.+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 456789999999999999999999999999888888988877777676642 4588999999999999
Q ss_pred ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCC--CC---CC
Q 027985 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA------------DNVNKILVGNKADMDESK--RA---VP 140 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~p~ivv~nK~D~~~~~--~~---~~ 140 (216)
..++..++++++++|+|||+++..+++.+..|+..+..... ..+|++||+||+|+.+.. +. +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999976531 258999999999996532 12 35
Q ss_pred HHHHHHHHHHhCC
Q 027985 141 TAKGQELADEYGI 153 (216)
Q Consensus 141 ~~~~~~~~~~~~~ 153 (216)
.++++.+++++++
T Consensus 177 ~e~a~~~A~~~g~ 189 (334)
T PLN00023 177 VDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 7899999999884
No 125
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=3.5e-26 Score=161.96 Aligned_cols=151 Identities=22% Similarity=0.407 Sum_probs=118.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
||+++|.+|+|||||++++++... ....++.+ .....+.+.+ +.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIG--FNVETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcC--cceEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998874 33444444 3334455554 689999999999988889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----hCCcEEEEecCCCCCHHHHH
Q 027985 97 VTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE-----YGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~ 170 (216)
+++++++..+..|+..+.... ..+.|+++|+||+|+.... ..++....... ..+.++++||++|.|++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence 999999999988887775532 3478999999999985422 23333333322 23579999999999999999
Q ss_pred HHHHH
Q 027985 171 FSIAR 175 (216)
Q Consensus 171 ~~l~~ 175 (216)
++|..
T Consensus 153 ~~l~~ 157 (158)
T cd00878 153 DWLLQ 157 (158)
T ss_pred HHHhh
Confidence 99875
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=7.2e-26 Score=164.17 Aligned_cols=156 Identities=19% Similarity=0.273 Sum_probs=120.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+++|.+|+|||||+++|.+..+.. +.++.+. ....+.+++ +.+.+||+||+..+...+..+++.+|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 345899999999999999999999876643 3444332 333445554 68999999999988888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH------------hCCcEEEEe
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE------------YGIKFFETS 159 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~S 159 (216)
+|+|++++.++.....++..+... ...+.|+++|+||+|+.. .+..+++.....- ....+++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S 166 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS 166 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence 999999999998888877766543 224689999999999853 3444444433210 124699999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 027985 160 AKTNFNVEQVFFSIARE 176 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~ 176 (216)
|++|+|++++++||...
T Consensus 167 a~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 167 VVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cccCCChHHHHHHHHhh
Confidence 99999999999999764
No 127
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=8e-26 Score=176.54 Aligned_cols=164 Identities=15% Similarity=0.143 Sum_probs=125.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc----ccc---ccccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTI---TTAYYRG 87 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~ 87 (216)
.-.|.|+|.|++|||||+++|++........+.+|.......+.+.+. ..+.+||+||..+- ..+ +...+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~-~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY-KSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC-cEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 356899999999999999999987665555566677777777777432 47999999996421 122 2334567
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN 165 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (216)
++++|+|+|+++.++++.+..|...+..+.. .+.|+++|+||+|+.+. .....+..+.+....+..++++||++++|
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~-~~~~~~~~~~~~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE-EEEREKRAALELAALGGPVFLISAVTGEG 315 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc-hhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence 9999999999987789999999988877643 36899999999998642 22233344555555668899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIKQR 180 (216)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (216)
+++++++|.+.+.++
T Consensus 316 I~eL~~~L~~~l~~~ 330 (335)
T PRK12299 316 LDELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887653
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=8.2e-26 Score=161.60 Aligned_cols=155 Identities=18% Similarity=0.180 Sum_probs=110.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc---------ccccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI---------TTAYYRG 87 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---------~~~~~~~ 87 (216)
+|+++|.+|+|||||+++|++..+.....+..+.+.....+..++ +.+.||||||+...... .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--LRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--eEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 789999999999999999999877544444444445444444443 68999999997421110 0011123
Q ss_pred ccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985 88 AMGILLVYDVTDESS--FNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN 165 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (216)
.|++++|+|+++..+ ++....|+..+.... .+.|+++|+||+|+.+.. .+. ..+.+.+..+..++++||++|.|
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~-~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFE-DLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchh-hHH--HHHHhhhhccCceEEEEecccCC
Confidence 689999999988654 356667777776544 368999999999985421 111 24455555567899999999999
Q ss_pred HHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREI 177 (216)
Q Consensus 166 i~~l~~~l~~~~ 177 (216)
++++|++|.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.3e-25 Score=160.84 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=114.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGAM 89 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 89 (216)
.|+++|.+|+|||||+++|.+........+..+.+.....+..++. ..+.+|||||... ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999976653333333344444444445442 4899999999642 11222333 34599
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEecCCCCC
Q 027985 90 GILLVYDVTDE-SSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETSAKTNFN 165 (216)
Q Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~ 165 (216)
++++|+|++++ .+++.+..|++.+..... ...|+++|+||+|+.+. ....+....+.... +..++++||+++.|
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 99999999998 788999899888876542 36899999999998542 22234455555553 67899999999999
Q ss_pred HHHHHHHHHHH
Q 027985 166 VEQVFFSIARE 176 (216)
Q Consensus 166 i~~l~~~l~~~ 176 (216)
++++|++|.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 130
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=1.2e-25 Score=165.64 Aligned_cols=158 Identities=21% Similarity=0.173 Sum_probs=116.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------ccccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITT 82 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~ 82 (216)
..+.++|+|+|.+|+|||||++++++..+.....+..+.+.....+.+++. ..+.+||+||.... ... .
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~ 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-L 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-H
Confidence 466789999999999999999999988754443444444555555555553 37999999997321 111 1
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT 162 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
..+..+|++++|+|++++.+......|...+......+.|+++|+||+|+.+... ........+..++++||++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~------~~~~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE------LEERLEAGRPDAVFISAKT 189 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH------HHHHhhcCCCceEEEEcCC
Confidence 2356899999999999988888877777777665545689999999999854221 1133444557899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAREI 177 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (216)
+.|+++++++|.+.+
T Consensus 190 ~~gi~~l~~~L~~~~ 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999987653
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=1.1e-25 Score=159.04 Aligned_cols=152 Identities=22% Similarity=0.456 Sum_probs=118.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
.|+++|++|+|||||+++|.+..+...+.++.+.+.. .+..++ +.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3789999999999999999999988888887765544 344444 789999999999988889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HHhCCcEEEEecCCCCCHHHHH
Q 027985 97 VTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
+++..++.....|+..+... ...+.|+++|+||+|+.+.. ......... ....+.++++|++++.|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL---SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc---CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence 99988888887777666442 22468999999999985421 112211111 1123578999999999999999
Q ss_pred HHHHH
Q 027985 171 FSIAR 175 (216)
Q Consensus 171 ~~l~~ 175 (216)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04159 154 DWLIK 158 (159)
T ss_pred HHHhh
Confidence 99865
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=1.2e-24 Score=153.54 Aligned_cols=158 Identities=35% Similarity=0.492 Sum_probs=125.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
++||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+...++.++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999888778888888888777777877667899999999988888888888899999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 95 YDVTDE-SSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 95 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
+|.... .++.... .|...+......+.|+++++||.|+.... ........+.......++++||.++.|+.++|++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence 998776 5555554 56655655544378999999999985422 3333444444444568999999999999999998
Q ss_pred HH
Q 027985 173 IA 174 (216)
Q Consensus 173 l~ 174 (216)
|.
T Consensus 159 l~ 160 (161)
T TIGR00231 159 VE 160 (161)
T ss_pred hh
Confidence 74
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=9.1e-25 Score=156.96 Aligned_cols=157 Identities=22% Similarity=0.402 Sum_probs=118.3
Q ss_pred cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (216)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (216)
+.......++|+++|++|+|||||++++.+..+.. ..++.+ +....+..++ ..+.+||+||+..+...+..+++.
T Consensus 7 ~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g--~~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ 81 (173)
T cd04155 7 KLRKSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQG--FNIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFEN 81 (173)
T ss_pred HhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcC
Confidence 33445558999999999999999999999876543 344444 3334555655 689999999998888888888999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--------CcEEEE
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--------IKFFET 158 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 158 (216)
+|++++|+|+.+..++.....++..+... ...++|+++++||+|+.+. ... +.+.+..+ ..++++
T Consensus 82 ~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~---~~i~~~l~~~~~~~~~~~~~~~ 155 (173)
T cd04155 82 TDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA---APA---EEIAEALNLHDLRDRTWHIQAC 155 (173)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC---CCH---HHHHHHcCCcccCCCeEEEEEe
Confidence 99999999999988888877776665433 2346899999999998542 112 22233333 247899
Q ss_pred ecCCCCCHHHHHHHHHH
Q 027985 159 SAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 159 Sa~~~~~i~~l~~~l~~ 175 (216)
||++|+|++++|+||.+
T Consensus 156 Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 156 SAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999999865
No 134
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=3.7e-25 Score=159.82 Aligned_cols=154 Identities=27% Similarity=0.374 Sum_probs=111.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-------CCCcccc------ceeeEEEEEE--EEE---CCeEEEEEEEeCCCccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS-------FTTSFIT------TIGIDFKIRT--IEL---DGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~~~~ 78 (216)
+|+++|.+++|||||+++|++.. +...+.+ ..+.+..... +.+ ++..+.+.||||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998642 1111111 1112222222 222 5566889999999999998
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC---cE
Q 027985 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI---KF 155 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~ 155 (216)
..+..+++.+|++|+|+|+++..+......|.... ..++|+++|+||+|+.+. ......+.+.+..++ .+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSA---DPERVKQQIEDVLGLDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcC---CHHHHHHHHHHHhCCCcccE
Confidence 88888999999999999999876666665554322 136899999999998541 122334556666665 48
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 027985 156 FETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
+++||++|+|++++|++|.+.+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhhC
Confidence 9999999999999999998764
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.5e-24 Score=154.34 Aligned_cols=153 Identities=19% Similarity=0.195 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC---CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+.|+|+|.+++|||||+++|++.. +.....++.+.+.....+.+.+ ...+.+|||||++.+.......++.+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999643 3333344445455445555542 258999999999888766667788999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHH---hCCcEEEEecCCCCC
Q 027985 93 LVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKGQELADE---YGIKFFETSAKTNFN 165 (216)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 165 (216)
+|+|+++ +++.+.+ ..+... . ..|+++|+||+|+.+... .....+...+.+. .+..++++||++++|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999986 3333322 222222 1 248999999999854211 1112333344443 357899999999999
Q ss_pred HHHHHHHHHH
Q 027985 166 VEQVFFSIAR 175 (216)
Q Consensus 166 i~~l~~~l~~ 175 (216)
++++++.+..
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 136
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=2e-24 Score=169.97 Aligned_cols=159 Identities=23% Similarity=0.235 Sum_probs=117.5
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc---------ccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRT 79 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~ 79 (216)
.+..+..++|+++|.+|+|||||+|+|++........++.|.++....+.+++. ..+.||||+|... +..
T Consensus 183 ~r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~ 261 (351)
T TIGR03156 183 RRKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRA 261 (351)
T ss_pred hhcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHH
Confidence 344456799999999999999999999998765555556666777777777443 4899999999721 222
Q ss_pred ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEe
Q 027985 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETS 159 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (216)
. ...+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.+. ....... .....++++|
T Consensus 262 t-le~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~~v~~~~-~~~~~~i~iS 333 (351)
T TIGR03156 262 T-LEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------PRIERLE-EGYPEAVFVS 333 (351)
T ss_pred H-HHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------HhHHHHH-hCCCCEEEEE
Confidence 1 124778999999999999888877777666665544446899999999998541 1111111 1224689999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 027985 160 AKTNFNVEQVFFSIARE 176 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~ 176 (216)
|++|.|+++++++|.+.
T Consensus 334 Aktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 334 AKTGEGLDLLLEAIAER 350 (351)
T ss_pred ccCCCCHHHHHHHHHhh
Confidence 99999999999998764
No 137
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=2.7e-24 Score=167.86 Aligned_cols=160 Identities=17% Similarity=0.174 Sum_probs=120.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc----ccccc---cccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TITTA---YYRG 87 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~---~~~~ 87 (216)
.-.|+|+|.|++|||||+++|++........+.+|.......+.+++. ..+.|||+||..+.. .+... .+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~-~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDG-RSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCc-eEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 457899999999999999999987654444555566666667777652 579999999964321 22223 3456
Q ss_pred ccEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985 88 AMGILLVYDVTDE---SSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT 162 (216)
Q Consensus 88 ~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
++++++|+|+++. .+++.+..|.+.+..+.. .+.|+++|+||+|+.+. ....+..+.+.+..+..++++||++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~l~~~~~~~vi~iSAkt 313 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKELKKALGKPVFPISALT 313 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHHHHHHcCCcEEEEEccC
Confidence 9999999999876 678888888887766532 36899999999998652 2233445566666678899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAREI 177 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (216)
++|+++++++|.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 138
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=2.2e-23 Score=155.28 Aligned_cols=169 Identities=40% Similarity=0.580 Sum_probs=135.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+|+|++|+|||||+++|....+...+.++.+..+........+..+.+.+||++|++++..++..+++.++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 49999999999999999999999999999998887777777666665568999999999999999999999999999999
Q ss_pred EECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------CCCHHHHHHHHHHh---CCcEEEEe
Q 027985 95 YDVTD-ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-----------AVPTAKGQELADEY---GIKFFETS 159 (216)
Q Consensus 95 ~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~S 159 (216)
+|..+ ..+.+....|+..+........|+++|+||+|+..... ....+......... ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99998 55556667788888777655789999999999965431 22222222222222 23489999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHHHhh
Q 027985 160 AK--TNFNVEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 160 a~--~~~~i~~l~~~l~~~~~~~~~~ 183 (216)
++ ++.++.++|..+...+.+....
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEK 190 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhh
Confidence 99 9999999999988888755433
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=2.6e-24 Score=153.78 Aligned_cols=158 Identities=20% Similarity=0.151 Sum_probs=110.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
.|+|+|.+|+|||||+++|+...+.....++.+.+.....+..+ +....+.+|||||+..+..++...++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999888766555555555544445443 12368999999999888888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH----H--hCCcEEEEecCCCCCHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD----E--YGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~--~~~~~~~~Sa~~~~~i~~l 169 (216)
|+++....... ..+..+.. .+.|+++|+||+|+.+............+.. . ..+.++++|+++|+|++++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 99874322221 12222322 3689999999999854221111111221111 1 1257999999999999999
Q ss_pred HHHHHHHHH
Q 027985 170 FFSIAREIK 178 (216)
Q Consensus 170 ~~~l~~~~~ 178 (216)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987653
No 140
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.92 E-value=2.7e-25 Score=147.72 Aligned_cols=161 Identities=22% Similarity=0.406 Sum_probs=127.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..+.+.++|..+||||||+|....+.+.....|+.+.+ +..+.. +.+.+.+||.||++.+..+|..|++.+++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~tk--gnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKVTK--GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEecc--CceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 35789999999999999999999999989899998844 444444 44899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh--CCcEEEEecCCCCCHHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEY--GIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~ 170 (216)
|+|+.+++.+...+..+..+.... -.++|+++.+||.|++++.......+...+.... .+.+|.+|+++..||+.+.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence 999999999888887776665543 3579999999999986633321111111111111 1568999999999999999
Q ss_pred HHHHHHHH
Q 027985 171 FSIAREIK 178 (216)
Q Consensus 171 ~~l~~~~~ 178 (216)
.||+++-.
T Consensus 175 ~Wli~hsk 182 (186)
T KOG0075|consen 175 DWLIEHSK 182 (186)
T ss_pred HHHHHHhh
Confidence 99998754
No 141
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=1.2e-24 Score=151.00 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=109.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--RG 87 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~ 87 (216)
++|+++|.|++|||||+|+|++........|+.|.+.....+.+.+ ..+.++|+||...... ....++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999998778889999998888888888 5899999999543322 122233 57
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
.|++|+|+|++..+.-- .....+.. .++|+++|+||+|...... ...+...+.+.++++++++||++++|++
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e---~g~P~vvvlN~~D~a~~~g--~~id~~~Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLE---LGIPVVVVLNKMDEAERKG--IEIDAEKLSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHH---TTSSEEEEEETHHHHHHTT--EEE-HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHH---cCCCEEEEEeCHHHHHHcC--CEECHHHHHHHhCCCEEEEEeCCCcCHH
Confidence 99999999997643222 22222333 3799999999999854222 2335677888899999999999999999
Q ss_pred HHHHHH
Q 027985 168 QVFFSI 173 (216)
Q Consensus 168 ~l~~~l 173 (216)
++++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999865
No 142
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=1.2e-23 Score=148.79 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=111.6
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--ccccEE
Q 027985 20 LIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--RGAMGI 91 (216)
Q Consensus 20 v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~d~~ 91 (216)
|+|.+|+|||||++++++........++.+.+.....+.+++ ..+.+|||||+..+.. ++..++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998876555666666667667777776 5799999999876553 234445 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
++|+|+.+++... .++..+.. .+.|+++|+||+|+.+.. .+ ....+.+.+..+..++++|++++.|++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKR-GI-KIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccc-cc-hhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 9999998754432 33333333 268999999999996532 22 2234567777789999999999999999999
Q ss_pred HHHHHH
Q 027985 172 SIAREI 177 (216)
Q Consensus 172 ~l~~~~ 177 (216)
+|.+.+
T Consensus 151 ~l~~~~ 156 (158)
T cd01879 151 AIAELA 156 (158)
T ss_pred HHHHHh
Confidence 988763
No 143
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.2e-24 Score=148.29 Aligned_cols=160 Identities=20% Similarity=0.389 Sum_probs=128.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+++|-.++||||++.+|....+... .||.+ +.+..+++.+ +.+.+||.+|++.++.+|..++++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence 34568999999999999999999976666544 77766 5555666765 8999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCC
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFN 165 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 165 (216)
|||+|.+|.+.+..+++.+..+..... .+.|+++.+||.|++++.. ..++..... .....+..++|.+|+|
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als---~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS---AAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC---HHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 999999999999999887777765543 5789999999999976433 333322222 1235688889999999
Q ss_pred HHHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIKQ 179 (216)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (216)
+.+.++||.+.+..
T Consensus 166 L~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988753
No 144
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=3.3e-24 Score=156.83 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------ccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD--DSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 81 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 81 (216)
-+|+++|.+++|||||+++|+. ..+.... ..+.+.+.......+....+.+.+||+||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999986 4443322 1122233333333333344789999999999998888
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-------HhCCc
Q 027985 82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD-------EYGIK 154 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~ 154 (216)
..+++.+|++++|+|+++.. ......++..+.. .+.|+++|+||+|+.+.......+++..+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998732 2233333333332 3689999999999864222222334444442 23578
Q ss_pred EEEEecCCCCCHHHH
Q 027985 155 FFETSAKTNFNVEQV 169 (216)
Q Consensus 155 ~~~~Sa~~~~~i~~l 169 (216)
++++||++|.|++++
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887554
No 145
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=3.4e-24 Score=149.13 Aligned_cols=134 Identities=22% Similarity=0.270 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc-----ccccccccccccccEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTITTAYYRGAMGI 91 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ 91 (216)
||+++|++|+|||||+++|.+..+. +.++.+ +.+. -.+||+||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 7999999999999999999987652 222222 1221 2689999973 2333322 47899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQVF 170 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~ 170 (216)
++|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....+..+.+++..+. .++++||++|.|++++|
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE--ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC--cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 99999999887654 2343321 249999999999854 23455667777777775 79999999999999999
Q ss_pred HHHH
Q 027985 171 FSIA 174 (216)
Q Consensus 171 ~~l~ 174 (216)
++|.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9874
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=3e-23 Score=145.12 Aligned_cols=154 Identities=52% Similarity=0.863 Sum_probs=119.3
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECC
Q 027985 20 LIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98 (216)
Q Consensus 20 v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (216)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 44445554 5666666666666689999999998887777788889999999999999
Q ss_pred ChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 99 DESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 99 ~~~s~~~~~~~~-~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
++.+...+..|+ ..+......+.|+++|+||+|+......................++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999999888873 3333344557999999999998543222111113444555668999999999999999999975
No 147
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=9.1e-24 Score=161.76 Aligned_cols=155 Identities=18% Similarity=0.098 Sum_probs=106.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRG 87 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 87 (216)
+|+|+|.||+|||||+|+|++..+.. +..+.+|.... ..+...+. .++.+|||||...... .....+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i-~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI-SGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE-EEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987643 33333333332 33333332 5799999999654211 12345789
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCH
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNV 166 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 166 (216)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+ ..........+....+. .++++||++|.|+
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKDIVPISALTGDNT 152 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 99999999998865553 233333333 2689999999999853 11122334444444444 7999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027985 167 EQVFFSIAREIKQR 180 (216)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (216)
++++++|.+.+.+.
T Consensus 153 ~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 153 SFLAAFIEVHLPEG 166 (270)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999998877543
No 148
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=8.2e-23 Score=163.49 Aligned_cols=158 Identities=19% Similarity=0.242 Sum_probs=120.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGAM 89 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 89 (216)
.|+|+|.|++|||||+++|++........+.+|.......+.+++. ..+.|||+||..+ ...+...+ +..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~-~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG-RSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC-ceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 8999999999999999999987765455566666676666666522 5799999999643 11222333 45699
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985 90 GILLVYDVTDE---SSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF 164 (216)
Q Consensus 90 ~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (216)
++|+|+|+++. ..++.+..|.+.+..+.. ...|++||+||+|+.+ ..+.++.+.+..+..++++||++++
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-----~~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-----AEENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 99999999764 677777788877776543 3689999999999843 1344566666667889999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREIKQR 180 (216)
Q Consensus 165 ~i~~l~~~l~~~~~~~ 180 (216)
|+++++++|.+.+.+.
T Consensus 314 GI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 314 GLDELLYAVAELLEET 329 (424)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999998887654
No 149
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=4.2e-24 Score=157.17 Aligned_cols=152 Identities=17% Similarity=0.217 Sum_probs=103.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCc-----------cccccccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-----------ERFRTITT 82 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~~~~~ 82 (216)
..++|+++|.+|+|||||+++|++..+.....++.+.. ...+... .+.+|||||. +.+...+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 45899999999999999999999888766666665543 3333332 5899999993 34444444
Q ss_pred cccc----cccEEEEEEECCChhhH-H---------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q 027985 83 AYYR----GAMGILLVYDVTDESSF-N---------NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELA 148 (216)
Q Consensus 83 ~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 148 (216)
.++. .++++++|+|......+ + .-...+..+.. .+.|+++|+||+|+.+.. .+....+.
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~----~~~~~~~~ 154 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR----DEVLDEIA 154 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH----HHHHHHHH
Confidence 4443 46788888888643221 0 00111222222 368999999999985422 33455566
Q ss_pred HHhCC---------cEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985 149 DEYGI---------KFFETSAKTNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 149 ~~~~~---------~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (216)
+.++. .++++||++| |+++++++|.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 66554 4899999999 999999999887643
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=9.6e-23 Score=164.84 Aligned_cols=155 Identities=22% Similarity=0.243 Sum_probs=119.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------cc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TT 82 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~ 82 (216)
....++|+++|.+|+|||||+|+|++... .....++.+.++....+.+++ ..+.+|||||....... ..
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 34568999999999999999999998754 334556777788878888887 56899999997654322 23
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT 162 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
.+++.+|++++|+|++++.+.+.. |+..+.. .+.|+++|+||+|+... ....+.+..+..++.+|+++
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN-------SLEFFVSSKVLNSSNLSAKQ 345 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc-------chhhhhhhcCCceEEEEEec
Confidence 467899999999999988776664 5554432 36899999999998542 12344566677899999998
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~~ 181 (216)
.||+++|+.|.+.+.+..
T Consensus 346 -~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAFY 363 (442)
T ss_pred -CCHHHHHHHHHHHHHHHh
Confidence 699999999999887654
No 151
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=1.1e-22 Score=143.59 Aligned_cols=146 Identities=23% Similarity=0.237 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYR 86 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 86 (216)
++|+++|++|+|||||++++++.... ....++.+.+.....+..++ ..+.+|||||....... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987642 23344555555555555555 57899999997554321 224567
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNV 166 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (216)
.+|++++|+|+.++.+......+.. ..+.|+++|+||+|+.+.... .....+..++++||.++.|+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCCH
Confidence 8999999999998777666544332 336899999999998653322 33444578999999999999
Q ss_pred HHHHHHHHHHH
Q 027985 167 EQVFFSIAREI 177 (216)
Q Consensus 167 ~~l~~~l~~~~ 177 (216)
++++++|.+.+
T Consensus 146 ~~l~~~l~~~~ 156 (157)
T cd04164 146 DELKEALLELA 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 152
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=3.1e-23 Score=149.20 Aligned_cols=154 Identities=24% Similarity=0.270 Sum_probs=108.1
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCcccc----cccc---ccccccccEE
Q 027985 20 LIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERF----RTIT---TAYYRGAMGI 91 (216)
Q Consensus 20 v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~d~~ 91 (216)
++|++|+|||||+++|.+........+..+.+.....+.++ + ..+.|||+||.... ..++ ...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999887533333444444554555565 4 57899999996421 1222 2346789999
Q ss_pred EEEEECCCh------hhHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEE
Q 027985 92 LLVYDVTDE------SSFNNIRNWMRNIDQHAA-------DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFET 158 (216)
Q Consensus 92 i~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
++|+|+.+. .++..+..|...+..... .+.|+++|+||+|+.... ..............+..++++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE-ELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh-HHHHHHHHHHhcCCCCCEEEE
Confidence 999999987 577777777777765432 368999999999985422 111111223333445689999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 027985 159 SAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~ 176 (216)
||+++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998754
No 153
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=9.7e-23 Score=165.02 Aligned_cols=164 Identities=15% Similarity=0.164 Sum_probs=118.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc----ccc---ccccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTI---TTAYYRG 87 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~ 87 (216)
...|+|+|.|++|||||+++|++........+.+|.......+.+.+ ..|.|||+||.... ..+ ....+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 46799999999999999999998766555566677777777777776 58999999995321 111 1224567
Q ss_pred ccEEEEEEECCCh----hhHHHHHHHHHHHHHhc-----------CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC
Q 027985 88 AMGILLVYDVTDE----SSFNNIRNWMRNIDQHA-----------ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG 152 (216)
Q Consensus 88 ~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 152 (216)
++++|+|+|+++. ..+..+..+...+..+. ....|++||+||+|+.+.. . ..+.........+
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~-e-l~e~l~~~l~~~g 314 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR-E-LAEFVRPELEARG 314 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-H-HHHHHHHHHHHcC
Confidence 9999999999753 35555555555554432 1358999999999985422 1 1223333344457
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 027985 153 IKFFETSAKTNFNVEQVFFSIAREIKQRLV 182 (216)
Q Consensus 153 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (216)
+.+|++||++++|+++++++|.+.+.....
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 899999999999999999999998876543
No 154
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=1.6e-22 Score=159.00 Aligned_cols=162 Identities=20% Similarity=0.230 Sum_probs=112.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-cccc-------cc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-RTIT-------TA 83 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~-------~~ 83 (216)
...++|+++|.+|+|||||+|+|++..+.. ...+..|.+.....+..++ .++.||||||.... ..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 345799999999999999999999887742 2233333444555566666 47899999997432 2211 12
Q ss_pred ccccccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--CcEEEEec
Q 027985 84 YYRGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETSA 160 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa 160 (216)
.++.+|++++|+|..+ ++.... .|+..+... +.|+++|+||+|+.+. ....+..+....+ ..+|++||
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~----~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK----YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc----cHHHHHHHHHhcCCCcEEEEEec
Confidence 4678999999999865 333433 344444432 4677889999998531 2344555554443 57999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985 161 KTNFNVEQVFFSIAREIKQRLVESD 185 (216)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~~~~~~ 185 (216)
++|.|++++|++|.+.+.+...-.+
T Consensus 199 ktg~gv~eL~~~L~~~l~~~~~~~~ 223 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKISPWLYA 223 (339)
T ss_pred cCccCHHHHHHHHHHhCCCCCCCCC
Confidence 9999999999999988765544443
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=8.9e-23 Score=167.39 Aligned_cols=163 Identities=23% Similarity=0.221 Sum_probs=116.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT 81 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~ 81 (216)
...++|+|+|.+++|||||+++|++... .....++.+.+.....+..++. .+.||||||... +..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 3569999999999999999999998865 3455677777777777777774 578999999532 22111
Q ss_pred -ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHHHH-HHHHHhCCcEEEE
Q 027985 82 -TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKGQ-ELADEYGIKFFET 158 (216)
Q Consensus 82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 158 (216)
..+++.+|++|+|+|++++.+...+. ++..+.. .+.|+++|+||+|+.+... .....++. .+.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 23568899999999999887777663 3333333 3789999999999964211 11111122 1222233689999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHH
Q 027985 159 SAKTNFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~~~ 181 (216)
||++|.|++++|+.+.+.+....
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999988775443
No 156
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=7.2e-23 Score=166.40 Aligned_cols=149 Identities=26% Similarity=0.240 Sum_probs=114.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAY 84 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 84 (216)
..++|+++|.+|+|||||+|+|++... .....++.+.++....+.+++ ..+.+|||||....... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 458999999999999999999998764 344566677777777778877 57899999997654321 2236
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF 164 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (216)
++.+|++++|+|++++.+.+....|.. ..+.|+++|+||+|+.+... .. ...+..++++||++|+
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~-~~--------~~~~~~~i~iSAktg~ 356 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEID-LE--------EENGKPVIRISAKTGE 356 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccch-hh--------hccCCceEEEEeeCCC
Confidence 788999999999998877665444332 33689999999999854211 11 3345679999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREIKQ 179 (216)
Q Consensus 165 ~i~~l~~~l~~~~~~ 179 (216)
|+++++++|.+.+..
T Consensus 357 GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 357 GIDELREAIKELAFG 371 (449)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988754
No 157
>PRK11058 GTPase HflX; Provisional
Probab=99.90 E-value=1.6e-22 Score=162.77 Aligned_cols=160 Identities=22% Similarity=0.215 Sum_probs=115.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc--ccccc------cc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--RTITT------AY 84 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~ 84 (216)
...++|+++|.+|+|||||+|+|++........++.|.+.....+.+.+. ..+.||||+|.... ...+. ..
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~ 273 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQE 273 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 34578999999999999999999987765555556666676666766653 26789999997331 12222 23
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCc-EEEEecCCC
Q 027985 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIK-FFETSAKTN 163 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 163 (216)
++.+|++++|+|++++.+...+..|...+......+.|+++|+||+|+.+... .... ....+.+ ++++||++|
T Consensus 274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~----~~~~--~~~~~~~~~v~ISAktG 347 (426)
T PRK11058 274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE----PRID--RDEENKPIRVWLSAQTG 347 (426)
T ss_pred hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh----HHHH--HHhcCCCceEEEeCCCC
Confidence 67899999999999988877776555555444444689999999999853211 1111 1123444 588999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027985 164 FNVEQVFFSIAREIKQ 179 (216)
Q Consensus 164 ~~i~~l~~~l~~~~~~ 179 (216)
+|+++++++|.+.+..
T Consensus 348 ~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 348 AGIPLLFQALTERLSG 363 (426)
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999988753
No 158
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=3.1e-22 Score=159.32 Aligned_cols=162 Identities=14% Similarity=0.177 Sum_probs=120.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM 89 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 89 (216)
.|+|+|.|++|||||+|+|++........|.+|.......+.+.+. ..+.|+|+||...-. ......+..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 7999999999999999999988776666677777777777776542 369999999964321 11123467899
Q ss_pred EEEEEEECC---ChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--CcEEEEecCC
Q 027985 90 GILLVYDVT---DESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETSAKT 162 (216)
Q Consensus 90 ~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 162 (216)
++++|+|+. +.+.++.+..|++.+..+.. ...|+++|+||+|+.+. . ...+.++.+.+..+ ..++++||++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~-~-el~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE-E-EAEERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh-H-HHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 999999987 45667777777777766532 25799999999998542 1 12334445555544 3789999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~~ 181 (216)
+.|+++++++|.+.+.+..
T Consensus 318 g~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 318 GLGVKELCWDLMTFIEENP 336 (390)
T ss_pred CcCHHHHHHHHHHHhhhCc
Confidence 9999999999999887543
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=9.4e-23 Score=148.88 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC----CC---CCccccceeeEEEEEEEEEC------------CeEEEEEEEeCCCccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD----SF---TTSFITTIGIDFKIRTIELD------------GKRIKLQIWDTAGQER 76 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~ 76 (216)
++|+++|.+++|||||+++|+.. .+ ..+..++.+.+.....+.+. +..+.+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 57999999999999999999863 11 12223334444443334333 2247899999999876
Q ss_pred cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHHHHH-HHH-----
Q 027985 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKGQE-LAD----- 149 (216)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~-~~~----- 149 (216)
+..........+|++++|+|+.+.........+. +.... +.|+++|+||+|+..... ....+.++. +..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5333334456789999999998754333322221 11111 579999999999853211 111222222 111
Q ss_pred -HhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 150 -EYGIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 150 -~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
..+++++++||++|+|+++++++|.+.+.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13478999999999999999999988775
No 160
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.8e-22 Score=142.56 Aligned_cols=146 Identities=20% Similarity=0.149 Sum_probs=101.6
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccccc
Q 027985 19 LLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRGAM 89 (216)
Q Consensus 19 ~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 89 (216)
+++|.+|+|||||+++|++.... ....+..+.+........++ ..+.+|||||+..... .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999987531 22233444445555555555 5899999999876433 2344678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQ 168 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 168 (216)
++++|+|..+..+.... .....+... +.|+++|+||+|+.+.... .......+. .++++|+++++|+++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDNIKEEDE------AAEFYSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECcccCChHHH------HHHHHhcCCCCeEEEecccCCCHHH
Confidence 99999999765433332 222223322 5899999999998552211 222334555 789999999999999
Q ss_pred HHHHHHHH
Q 027985 169 VFFSIARE 176 (216)
Q Consensus 169 l~~~l~~~ 176 (216)
+|++|.+.
T Consensus 149 l~~~l~~~ 156 (157)
T cd01894 149 LLDAILEL 156 (157)
T ss_pred HHHHHHhh
Confidence 99999875
No 161
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=2.3e-22 Score=146.23 Aligned_cols=155 Identities=21% Similarity=0.177 Sum_probs=109.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccc----------------cceeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFI----------------TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (216)
+|+|+|.+|+|||||+++|++........ .+.+.......+...+ ..+.+||+||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence 48999999999999999998876654331 1222333333344443 68999999999888777
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHH---------
Q 027985 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADE--------- 150 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~--------- 150 (216)
+...++.+|++++|+|+.++..... ..++..+.. .+.|+++|+||+|+.... .......++...+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8888999999999999987654332 233333333 378999999999986411 11112233333332
Q ss_pred -----hCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985 151 -----YGIKFFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 151 -----~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
....++++||++|.|+++++.+|.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246899999999999999999998875
No 162
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1e-21 Score=140.79 Aligned_cols=156 Identities=26% Similarity=0.237 Sum_probs=105.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----------TT 82 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~ 82 (216)
.++|+++|.+|+|||||+++|++.... ....++.+.......+..++ ..+.+||+||....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 478999999999999999999987642 23334444444445556665 36889999996433110 12
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh----CCcEEEE
Q 027985 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY----GIKFFET 158 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (216)
..++.+|++++|+|+.++.+..... ++..+.. .+.|+++++||+|+.+..........+.+.+.. +..++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 2457899999999998876654432 2222222 268999999999986532111122222333333 3689999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 027985 159 SAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~ 176 (216)
||++++|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 163
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=2.6e-22 Score=135.45 Aligned_cols=114 Identities=37% Similarity=0.647 Sum_probs=86.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
||+|+|.+|+|||||+++|++.... ....+..+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988876 12222333344444556666666799999999988888888889999999999
Q ss_pred EECCChhhHHHHHHH---HHHHHHhcCCCCcEEEEEeCCC
Q 027985 95 YDVTDESSFNNIRNW---MRNIDQHAADNVNKILVGNKAD 131 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~ivv~nK~D 131 (216)
||++++.+++.+.++ +..+..... +.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence 999999999987655 454544433 599999999998
No 164
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.88 E-value=1.2e-24 Score=150.30 Aligned_cols=185 Identities=31% Similarity=0.555 Sum_probs=155.0
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE-EEEEEEeCCCcccccccccccccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR-IKLQIWDTAGQERFRTITTAYYRG 87 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~ 87 (216)
...+++-++++|+|..++|||+++.++..+.++..+..+.+.++......++++. +++++||..|++++..+..-+++.
T Consensus 19 p~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyke 98 (229)
T KOG4423|consen 19 PKKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKE 98 (229)
T ss_pred CchhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecC
Confidence 3457899999999999999999999999999999999999988888888777654 688999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHA----ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKT 162 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
+++.++|||++..-+++.+..|.+.+.... ....|+++.+||+|...............+.+++|+ .++++|++.
T Consensus 99 a~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ke 178 (229)
T KOG4423|consen 99 AHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKE 178 (229)
T ss_pred CcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccc
Confidence 999999999999999999999999885532 234677888999998554333445677788888886 899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhcccCCCccc
Q 027985 163 NFNVEQVFFSIAREIKQRLVESDSKAEPQTI 193 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~ 193 (216)
+.+++|+.+.+++.+..+-.+..+......-
T Consensus 179 nkni~Ea~r~lVe~~lvnd~q~~~s~~~~~~ 209 (229)
T KOG4423|consen 179 NKNIPEAQRELVEKILVNDEQPIKSSAVDGD 209 (229)
T ss_pred ccChhHHHHHHHHHHHhhccCCccccccccc
Confidence 9999999999999888666555544444333
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=6.6e-22 Score=162.26 Aligned_cols=154 Identities=20% Similarity=0.216 Sum_probs=110.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY 84 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 84 (216)
...+|+|+|.+|+|||||+|+|++... .....++.+.+.....+.+++ ..+.||||||.+. +...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 357899999999999999999998764 345566666666666677776 4689999999753 22234456
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCC
Q 027985 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTN 163 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (216)
++.+|++|+|+|+++..+... ..+...+.. .+.|+++|+||+|+.... .+..+.+ ..+. ..+++||++|
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~----~~~~~~~--~~g~~~~~~iSA~~g 184 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE----ADAAALW--SLGLGEPHPVSALHG 184 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc----hhhHHHH--hcCCCCeEEEEcCCC
Confidence 789999999999998655432 233333433 368999999999985311 1122222 2333 4579999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027985 164 FNVEQVFFSIAREIKQ 179 (216)
Q Consensus 164 ~~i~~l~~~l~~~~~~ 179 (216)
.|++++|++|.+.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999988754
No 166
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.88 E-value=5.4e-22 Score=133.27 Aligned_cols=171 Identities=23% Similarity=0.475 Sum_probs=145.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
..-.+||.++|++..|||||+-.+.+..+.+++..+.+.++..+.+.+.+..+.+.|||.+|++++..+.+....++-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 33579999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC----CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE----SKRAVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
+++||++.+.++..+..|+......+..-+| |+|++|.|.-- +........++.+++..+.++|++|+....|++
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 9999999999999999999998877654444 78999999621 111122344667788889999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027985 168 QVFFSIAREIKQRLVE 183 (216)
Q Consensus 168 ~l~~~l~~~~~~~~~~ 183 (216)
.+|..+...+......
T Consensus 176 KIFK~vlAklFnL~~t 191 (205)
T KOG1673|consen 176 KIFKIVLAKLFNLPWT 191 (205)
T ss_pred HHHHHHHHHHhCCcee
Confidence 9999888777654433
No 167
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=3.5e-21 Score=156.94 Aligned_cols=162 Identities=26% Similarity=0.200 Sum_probs=113.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc---------
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------- 81 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------- 81 (216)
....++|+++|.+++|||||+++|++... .....++.+.+.....+..++. .+.+|||||........
T Consensus 169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHH
Confidence 34568999999999999999999998754 3344556666666666666663 78999999975543321
Q ss_pred --ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH----hCCcE
Q 027985 82 --TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE----YGIKF 155 (216)
Q Consensus 82 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~ 155 (216)
...++.+|++|+|+|+.++.+..+.. ++..+.. .+.|+++|+||+|+.+ ......+..+.+... .++++
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCce
Confidence 23578899999999999876665543 2233332 3689999999999862 111111111222222 23689
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 156 FETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
+++||++|.|++++|+++.+.+...
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998876543
No 168
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=2.2e-21 Score=161.43 Aligned_cols=153 Identities=21% Similarity=0.206 Sum_probs=112.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
...+|+++|.+++|||||+++|.+..+.....++.+.+.....+.+++. ..+.|||||||+.+..++...++.+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4578999999999999999999988876666566665665556666543 278999999999999988888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-------C--CcEEEEecCCCC
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-------G--IKFFETSAKTNF 164 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~ 164 (216)
|+|+++....+.. +.+..+. ..+.|+++++||+|+.+. ..+.+....... + ..++++||++|+
T Consensus 165 VVda~dgv~~qT~-e~i~~~~---~~~vPiIVviNKiDl~~~----~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 165 VVAADDGVMPQTI-EAISHAK---AANVPIIVAINKIDKPEA----NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEECCCCCCHhHH-HHHHHHH---HcCCCEEEEEECcccccC----CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 9999864222211 1122222 236899999999998542 223333332222 2 469999999999
Q ss_pred CHHHHHHHHHH
Q 027985 165 NVEQVFFSIAR 175 (216)
Q Consensus 165 ~i~~l~~~l~~ 175 (216)
|++++|++|..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999864
No 169
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=1.1e-21 Score=138.63 Aligned_cols=142 Identities=22% Similarity=0.224 Sum_probs=99.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----ccccccccccEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----ITTAYYRGAMGIL 92 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~~~~~~~~d~~i 92 (216)
+|+++|.+++|||||+++|.+..... .++. .+.+... .+||+||...... .....+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999988654211 1111 1122221 2699999632221 1123368999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC--cEEEEecCCCCCHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI--KFFETSAKTNFNVEQVF 170 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~l~ 170 (216)
+|+|+++..++. ..|+..+ ..+.|+++++||+|+.+ ...+....+.+..++ +++++||++|+|++++|
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 999999876542 2333332 12578999999999854 234566677777774 89999999999999999
Q ss_pred HHHHHHHHHHH
Q 027985 171 FSIAREIKQRL 181 (216)
Q Consensus 171 ~~l~~~~~~~~ 181 (216)
+++.+.+.+..
T Consensus 140 ~~l~~~~~~~~ 150 (158)
T PRK15467 140 DYLASLTKQEE 150 (158)
T ss_pred HHHHHhchhhh
Confidence 99988876543
No 170
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=8.7e-22 Score=164.51 Aligned_cols=157 Identities=22% Similarity=0.320 Sum_probs=114.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------CCCcc--------ccceeeEEEEEEEEE---CCeEEEEEEEeCCCccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDS-------FTTSF--------ITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQER 76 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~-------~~~~~--------~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~ 76 (216)
.-+|+++|..++|||||+++|+... +...+ ..+.++......+.+ ++..+.+.||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4579999999999999999997642 11111 112333322223333 45668999999999999
Q ss_pred cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC---
Q 027985 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI--- 153 (216)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--- 153 (216)
+...+..+++.+|++|+|+|+++..+......|+..+. .+.|+++|+||+|+.+.. .....+.+.+.++.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~---~~~~~~el~~~lg~~~~ 155 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD---PERVKKEIEEVIGLDAS 155 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC---HHHHHHHHHHHhCCCcc
Confidence 98888899999999999999998766666666554332 267999999999985421 12233455555565
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 154 KFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 154 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
.++++||++|.|++++|++|.+.+.
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCC
Confidence 4899999999999999999987763
No 171
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=4.8e-21 Score=136.27 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=102.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYR 86 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 86 (216)
..+|+++|.+|+|||||+++|++...........+........ .......+.+||+||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999876532222111111222222 222236899999999653322 2234578
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCC
Q 027985 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFN 165 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 165 (216)
.+|++++|+|+.++.. .....+...+... +.|+++|+||+|+... .....+....+..... ..++++|++++.|
T Consensus 82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 82 DVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKD-KEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred hCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhcccc-HHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 8999999999987621 1112223333332 5899999999998532 2222333444444443 6899999999999
Q ss_pred HHHHHHHHHHH
Q 027985 166 VEQVFFSIARE 176 (216)
Q Consensus 166 i~~l~~~l~~~ 176 (216)
+++++++|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998764
No 172
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=4.8e-22 Score=144.62 Aligned_cols=159 Identities=22% Similarity=0.251 Sum_probs=109.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------ccccceeeEEEEEEEE--ECCeEEEEEEEeCCC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTT------------------SFITTIGIDFKIRTIE--LDGKRIKLQIWDTAG 73 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~G 73 (216)
...+|+++|+.++|||||+.+|+...... +.....+.......+. ..+ ..+.|+|+||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~--~~i~~iDtPG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN--RKITLIDTPG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS--EEEEEEEESS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc--cceeeccccc
Confidence 35789999999999999999997433211 1122334444445554 444 6899999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HHHHHhC
Q 027985 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ-ELADEYG 152 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~~~ 152 (216)
+..+.......++.+|++|+|+|+.+.-.. ...+.+..+... +.|+++|+||+|+.........+++. .+.+..+
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceeecccceecccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 998887787889999999999999865332 233334444443 78899999999986211111112222 3333332
Q ss_pred ------CcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 153 ------IKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 153 ------~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
++++++||.+|.|+++|++.|.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 47999999999999999999988764
No 173
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=3.7e-21 Score=160.63 Aligned_cols=155 Identities=21% Similarity=0.258 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC---CCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD---SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+.|+++|.+++|||||+++|++. .+..+..++.+.+.....+..++ ..+.|||+||++.+...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999973 34445566777777766777776 68999999999998888888889999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC-CCCHHHHHHHHHHh----CCcEEEEecCCC
Q 027985 93 LVYDVTD---ESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR-AVPTAKGQELADEY----GIKFFETSAKTN 163 (216)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~----~~~~~~~Sa~~~ 163 (216)
+|+|+++ +++.+.+ ..+... ++| +++|+||+|+.+... ....++++.+.+.. +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~l---gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDLL---GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999987 3444433 222222 567 999999999865221 11233455555544 468999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027985 164 FNVEQVFFSIAREIKQ 179 (216)
Q Consensus 164 ~~i~~l~~~l~~~~~~ 179 (216)
+|+++++++|...+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999988776543
No 174
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.87 E-value=3.1e-21 Score=164.19 Aligned_cols=159 Identities=20% Similarity=0.214 Sum_probs=113.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
......|+|+|..++|||||+++|....+......+.+.......+.+++ ..+.||||||++.|..++...++.+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 34568899999999999999999998777655555555555555566665 5799999999999999998889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH---HHHHHhC--CcEEEEecCCCCCH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ---ELADEYG--IKFFETSAKTNFNV 166 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~---~~~~~~~--~~~~~~Sa~~~~~i 166 (216)
|+|||+++.-....... +..+. ..++|++|++||+|+.+........++. .+...++ +.+|++||++|+|+
T Consensus 365 ILVVdAddGv~~qT~e~-i~~a~---~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 365 VLVVAADDGVMPQTIEA-INHAK---AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEEEECCCCCCHhHHHH-HHHHH---hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 99999987422111111 12222 2368999999999985421110111111 1122333 68999999999999
Q ss_pred HHHHHHHHHH
Q 027985 167 EQVFFSIARE 176 (216)
Q Consensus 167 ~~l~~~l~~~ 176 (216)
+++|++|...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998753
No 175
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=2e-21 Score=142.94 Aligned_cols=160 Identities=17% Similarity=0.186 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC---CCccccceeeEEEEEEEEEC---------------------------C----
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIRTIELD---------------------------G---- 61 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 61 (216)
++|+++|+.|+|||||+..+.+... ..+.....+.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999975421 12222222222211111111 1
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCC
Q 027985 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVP 140 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~ 140 (216)
....+.|||+||++.+...+...+..+|++++|+|+.++.........+..+... ...|+++|+||+|+.+... ...
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 0157999999999888777777888899999999998742111111222222222 1247899999999854111 111
Q ss_pred HHHHHHHHHHh---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985 141 TAKGQELADEY---GIKFFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 141 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
.+.++.+.... ++.++++||++|+|++++|++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 12333333332 46899999999999999999988655
No 176
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=2.4e-21 Score=139.95 Aligned_cols=150 Identities=16% Similarity=0.173 Sum_probs=95.5
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------cccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTI 80 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~ 80 (216)
.+...++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++ .+.+||+||... +..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 446678999999999999999999998764322222222222223333343 689999999531 2222
Q ss_pred cccccc---cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHhC--Cc
Q 027985 81 TTAYYR---GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADEYG--IK 154 (216)
Q Consensus 81 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~--~~ 154 (216)
...+++ .++++++|+|+..+.+.... .++..+.. .+.|+++|+||+|+.+.. .....+.++......+ ..
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 233444 35799999999875444433 22333333 268999999999985421 1222344445555543 48
Q ss_pred EEEEecCCCCCHH
Q 027985 155 FFETSAKTNFNVE 167 (216)
Q Consensus 155 ~~~~Sa~~~~~i~ 167 (216)
+|++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999974
No 177
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=6.9e-21 Score=139.47 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=102.2
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTI 80 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~ 80 (216)
..+..++|+|+|.+|+|||||+++|++..+.....++.+.+........+ ..+.||||||.. .+...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 34567899999999999999999999876433333332222222222222 579999999942 22223
Q ss_pred ccccccc---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHHhCCcEE
Q 027985 81 TTAYYRG---AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKGQELADEYGIKFF 156 (216)
Q Consensus 81 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~ 156 (216)
...+++. .+++++|+|..++...... .....+.. .+.|+++++||+|+.+... +...+.+..+.......++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 3334443 4678888998765433321 11122222 2688999999999854211 1112223344444467899
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 027985 157 ETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
++||++++|++++++.|.+.+.
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999987764
No 178
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=8.7e-21 Score=158.57 Aligned_cols=146 Identities=20% Similarity=0.243 Sum_probs=110.9
Q ss_pred cCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--ccccEEEE
Q 027985 22 GDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGILL 93 (216)
Q Consensus 22 G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~ 93 (216)
|++|+|||||+|+|++........++.+.+.....+..++ ..+.+||+||+..+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999887667778888887777777776 46899999998776543 22222 47899999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (216)
|+|+++.+.. ..+...+. ..+.|+++|+||+|+.+. ..+ ..+.+.+.+..+++++++||++|+|++++++++
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~-~~i-~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEK-KGI-RIDEEKLEERLGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHh-CCC-hhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999874322 12222222 237899999999998542 222 245677888889999999999999999999999
Q ss_pred HHHH
Q 027985 174 AREI 177 (216)
Q Consensus 174 ~~~~ 177 (216)
.+..
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8754
No 179
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=4.7e-21 Score=161.78 Aligned_cols=161 Identities=18% Similarity=0.199 Sum_probs=111.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeE--EEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGID--FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....|+|+|..++|||||+++|....+......+.+.+ .+...+..++....+.||||||++.|..++...++.+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 356789999999999999999999877755444444332 233333333444789999999999999999889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHH---HHHHhC--CcEEEEecCCCCC
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE---LADEYG--IKFFETSAKTNFN 165 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~~~~~ 165 (216)
+|+|+|+++......... +..+. ..++|+++++||+|+...........+.. +...++ ++++++||++|+|
T Consensus 322 aILVVDA~dGv~~QT~E~-I~~~k---~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~G 397 (742)
T CHL00189 322 AILIIAADDGVKPQTIEA-INYIQ---AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTN 397 (742)
T ss_pred EEEEEECcCCCChhhHHH-HHHHH---hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCC
Confidence 999999987422222211 12222 23689999999999854211100111111 122233 6899999999999
Q ss_pred HHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREI 177 (216)
Q Consensus 166 i~~l~~~l~~~~ 177 (216)
+++++++|....
T Consensus 398 IdeLle~I~~l~ 409 (742)
T CHL00189 398 IDKLLETILLLA 409 (742)
T ss_pred HHHHHHhhhhhh
Confidence 999999987764
No 180
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=3.2e-21 Score=144.01 Aligned_cols=163 Identities=19% Similarity=0.119 Sum_probs=112.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc--------ccccccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYY 85 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~ 85 (216)
..--|+++|.|++|||||+|++++....-.+....|+......+...+ ..++.++||||..... ......+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 445689999999999999999999998665555555555556655554 3699999999955432 2233457
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCC
Q 027985 86 RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNF 164 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (216)
.++|+++||+|+.++-.. .-...++.+.. .+.|+++++||+|........ ......+..... ..+|++||.+|.
T Consensus 84 ~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 84 KDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred ccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeeccccC
Confidence 889999999999873222 11112233333 257999999999986533211 223333333333 389999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 027985 165 NVEQVFFSIAREIKQRLV 182 (216)
Q Consensus 165 ~i~~l~~~l~~~~~~~~~ 182 (216)
|++.|.+.+...+.+...
T Consensus 159 n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 159 NVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred CHHHHHHHHHHhCCCCCC
Confidence 999999999888865433
No 181
>PRK00089 era GTPase Era; Reviewed
Probab=99.86 E-value=5.2e-21 Score=148.39 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=104.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc--------cccccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYYR 86 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~ 86 (216)
.-.|+|+|.+|+|||||+|+|++..+........++......+...+. .++.+|||||..... ......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~-~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-AQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC-ceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 356899999999999999999998764332222222222222222222 689999999964432 22233567
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCC
Q 027985 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETSAKTNFN 165 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 165 (216)
.+|++++|+|+++.... .....+..+. ..+.|+++|+||+|+... ..........+.+..+ ..++++||+++.|
T Consensus 84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~-~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKD-KEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCC-HHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 89999999999873221 1122222232 226899999999998531 1222334444444444 5799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIKQ 179 (216)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (216)
+++++++|.+.+.+
T Consensus 159 v~~L~~~L~~~l~~ 172 (292)
T PRK00089 159 VDELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999888753
No 182
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.2e-21 Score=134.11 Aligned_cols=162 Identities=25% Similarity=0.367 Sum_probs=122.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC-------CCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD-------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (216)
.+.|+|+|..++|||||+.++... -......++.+ ....++...+ ..+.+||.+|++...++|..+|..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHHHH
Confidence 477999999999999999886321 11223344444 5555666664 589999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC---CcEEEEecCCC
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG---IKFFETSAKTN 163 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~ 163 (216)
++++||++|+++++.++.....++.+.. -...++|+++.+||.|+.+.............++..+ +.+.+|||.+|
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG 172 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence 9999999999999999887776655533 3345899999999999865333222222222233333 68999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027985 164 FNVEQVFFSIAREIKQR 180 (216)
Q Consensus 164 ~~i~~l~~~l~~~~~~~ 180 (216)
+||++-.+|+...+.++
T Consensus 173 egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 173 EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 99999999999998766
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=2.2e-20 Score=152.47 Aligned_cols=146 Identities=23% Similarity=0.221 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR 86 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 86 (216)
++|+++|.+|+|||||+++|++... .....++.+.+.....+.+++ ..+.+|||||... ........++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998764 234455666667777777777 6899999999876 1222344678
Q ss_pred cccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCC
Q 027985 87 GAMGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTN 163 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (216)
.+|++|+|+|+.++.+.. .+..|+ ... +.|+++|+||+|+.+ .......+ ...++ .++++||++|
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l---~~~---~~piilv~NK~D~~~-----~~~~~~~~-~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKIL---RKS---NKPVILVVNKVDGPD-----EEADAYEF-YSLGLGEPYPISAEHG 147 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHH---HHc---CCcEEEEEECccCcc-----chhhHHHH-HhcCCCCCEEEEeeCC
Confidence 999999999998753332 222332 222 689999999999643 11222333 34455 4899999999
Q ss_pred CCHHHHHHHHHH
Q 027985 164 FNVEQVFFSIAR 175 (216)
Q Consensus 164 ~~i~~l~~~l~~ 175 (216)
.|++++++++..
T Consensus 148 ~gv~~l~~~I~~ 159 (435)
T PRK00093 148 RGIGDLLDAILE 159 (435)
T ss_pred CCHHHHHHHHHh
Confidence 999999999887
No 184
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=5.4e-20 Score=157.28 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=115.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc----------ccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----------TAY 84 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------~~~ 84 (216)
.++|+++|+||+|||||+|+|++........++.|.+.....+..++ ..+.+||+||...+.... ..+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence 47899999999999999999998876666667777766666665554 689999999987654321 112
Q ss_pred --cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985 85 --YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT 162 (216)
Q Consensus 85 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
...+|++++|+|+++.+... .+...+... +.|+++|+||+|+.+. .. ...+.+.+.+.++++++++|+.+
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~---giPvIvVlNK~Dl~~~-~~-i~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLEL---GIPCIVALNMLDIAEK-QN-IRIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHHc---CCCEEEEEEchhhhhc-cC-cHHHHHHHHHHhCCCEEEEEeec
Confidence 24789999999998754422 233334333 6899999999998542 22 24566778888999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAREI 177 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (216)
++|++++++.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999887754
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=3.1e-20 Score=151.64 Aligned_cols=160 Identities=26% Similarity=0.216 Sum_probs=111.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------- 80 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------- 80 (216)
...++|+|+|.+++|||||+++|++... .....++.+.+.....+..++ ..+.+|||||.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3579999999999999999999997653 345566666666656666666 46889999996432221
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH----hCCcEE
Q 027985 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE----YGIKFF 156 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~ 156 (216)
....++.+|++|+|+|+.++.+..+.. ++..+.. .+.|+++|+||+|+.+.. ...+..+.+... ..++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEK--TMEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHH--HHHHHHHHHHHhcccccCCCEE
Confidence 123567899999999999876655542 2233332 268999999999986311 111112222222 246899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHH
Q 027985 157 ETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
++||++|.|++++++.+.+.+...
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988766543
No 186
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=5.7e-20 Score=135.05 Aligned_cols=115 Identities=20% Similarity=0.406 Sum_probs=86.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccc-cEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGA-MGILL 93 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~ 93 (216)
+|+++|++++|||+|+++|....+.....++ .. ....+... +....+.|||+||+..+...+..+++.+ +++||
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~--~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EP--NVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-ee--cceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEE
Confidence 6899999999999999999988776554332 22 22222221 2336899999999999888888889998 99999
Q ss_pred EEECCCh-hhHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCC
Q 027985 94 VYDVTDE-SSFNNIRNWMRNIDQH---AADNVNKILVGNKADMDE 134 (216)
Q Consensus 94 v~d~~~~-~s~~~~~~~~~~l~~~---~~~~~p~ivv~nK~D~~~ 134 (216)
|+|+.+. ..+..+..|+..+... ...+.|+++++||+|+..
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 9999987 6777777666554322 224799999999999854
No 187
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=2.3e-20 Score=131.67 Aligned_cols=152 Identities=19% Similarity=0.137 Sum_probs=104.8
Q ss_pred EEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-------cccccccccEE
Q 027985 20 LIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAYYRGAMGI 91 (216)
Q Consensus 20 v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~ 91 (216)
|+|++|+|||||++++++.... ....+..+.......+.... ...+.+||+||....... ....++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987554 44444444444444444432 258999999997655432 33477899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHH--HHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA--KGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
++|+|+.+........ +...... .+.|+++|+||+|+.......... .........+..++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999877666554 3333322 378999999999986422111111 112223334578999999999999999
Q ss_pred HHHHHHH
Q 027985 170 FFSIARE 176 (216)
Q Consensus 170 ~~~l~~~ 176 (216)
+.+|.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998765
No 188
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=9.6e-21 Score=131.46 Aligned_cols=163 Identities=29% Similarity=0.589 Sum_probs=142.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
-.+++++++|..|.||||++++.+...+...+.++.+.+.....+..+.+.+++..|||.|++.+......++-+..++|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 46899999999999999999999999999999999998888777766666699999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
+.||+...-++.++.+|...+...+. ++|+++.+||.|..+.. .....-.+.+..++.++++|++.+.|+..-|.|
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~---~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~ 163 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK---VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLW 163 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc---cccccceeeecccceeEEeecccccccccchHH
Confidence 99999999999999999999988765 69999999999985422 222333456677789999999999999999999
Q ss_pred HHHHHHH
Q 027985 173 IAREIKQ 179 (216)
Q Consensus 173 l~~~~~~ 179 (216)
+...+.-
T Consensus 164 LarKl~G 170 (216)
T KOG0096|consen 164 LARKLTG 170 (216)
T ss_pred HhhhhcC
Confidence 9988753
No 189
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=1.8e-20 Score=156.75 Aligned_cols=159 Identities=25% Similarity=0.318 Sum_probs=112.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCC--CCC-------------ccccceeeEEEEEEEEE---CCeEEEEEEEeCCCc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDS--FTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 74 (216)
++.-+|+|+|..++|||||+.+|+... +.. +...+.+.......+.+ ++..+.++||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345689999999999999999997532 110 11122222222222222 455689999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-
Q 027985 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI- 153 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 153 (216)
..+...+...++.+|++|+|+|+++.........|..... .+.|+++|+||+|+.+.. .......+.+..++
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~---~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD---PERVKQEIEDVIGID 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc---HHHHHHHHHHHhCCC
Confidence 9998888899999999999999988655555545443221 268999999999985421 12223444454555
Q ss_pred --cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 154 --KFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 154 --~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
.++++||++|.|+++++++|.+.+.
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 3899999999999999999988764
No 190
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.85 E-value=1.5e-19 Score=121.29 Aligned_cols=166 Identities=27% Similarity=0.401 Sum_probs=131.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC--CCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCcccc-ccccccccccccE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSF--TTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERF-RTITTAYYRGAMG 90 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~ 90 (216)
..||+|+|..++|||.++..|..... ...+.+|.. +.|...++.+ +..-.+.|+||.|.... ..+-..++.-+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 47999999999999999999875444 334556554 5666665554 33457999999997665 5666678888999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
+++||+..++++|+.+.-.-..+.... ...+|+++++||+|+.+ +.++..+.++.|++.-.+..+++++.+...+-+.
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~-p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE-PREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc-chhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 999999999999988765555554432 34689999999999964 7788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027985 170 FFSIAREIKQRLV 182 (216)
Q Consensus 170 ~~~l~~~~~~~~~ 182 (216)
|..+...+.+-+.
T Consensus 167 f~~l~~rl~~pqs 179 (198)
T KOG3883|consen 167 FTYLASRLHQPQS 179 (198)
T ss_pred HHHHHHhccCCcc
Confidence 9999888754433
No 191
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=4.6e-20 Score=150.43 Aligned_cols=151 Identities=22% Similarity=0.224 Sum_probs=108.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYRG 87 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 87 (216)
+|+|+|.+|+|||||+|+|++... .....++.+.+.....+.+++ ..+.||||||.. .+.......++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998764 234456666666666777776 479999999963 233444557789
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCH
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNV 166 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 166 (216)
+|++++|+|+.++.+... ..+...+... +.|+++|+||+|+.+... .... ....+. .++++||.+|.|+
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVvNK~D~~~~~~-----~~~~-~~~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVANKIDGKKEDA-----VAAE-FYSLGFGEPIPISAEHGRGI 148 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEEECccCCcccc-----cHHH-HHhcCCCCeEEEeCCcCCCh
Confidence 999999999987533332 1222223332 689999999999854221 1122 234565 7999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027985 167 EQVFFSIAREIKQ 179 (216)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (216)
+++++++.+.+..
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999998877643
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=2.2e-20 Score=159.94 Aligned_cols=158 Identities=22% Similarity=0.254 Sum_probs=112.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc----------ccc-c
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----------RTI-T 81 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~-~ 81 (216)
..++|+++|.+|+|||||+++|++... .....++++.+.....+.+++. .+.||||||.... ..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999998875 2344566666776667777774 5779999995421 111 1
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HHHHHh----CCcEE
Q 027985 82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ-ELADEY----GIKFF 156 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~~----~~~~~ 156 (216)
...++.+|++++|+|+++..+...+.- +..+.. .+.|+++|+||+|+.+... .+..+ .+.... ..+++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEE
Confidence 224678999999999998877776543 333333 3689999999999854211 11222 122221 25789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHH
Q 027985 157 ETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
++||++|.|++++++.+.+.+.+.
T Consensus 600 ~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 600 NLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999998887654
No 193
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.3e-20 Score=123.36 Aligned_cols=157 Identities=20% Similarity=0.416 Sum_probs=123.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
-.++|+.+|..++||||++..|+..... ...||++ +.+..+.+.+ +.|.+||.+|++..+..|.+++....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 3689999999999999999999876643 3355655 5666777765 799999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----hCCcEEEEecCCCCCHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE-----YGIKFFETSAKTNFNVE 167 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 167 (216)
|+|..+.+.++..++.+..+.... -...|++|.+||.|++++ ....+++.+.+- ..+-+.++++.+|+|+.
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A---~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA---MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc---cCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 999998888888877665554332 236788889999999763 345555555432 22457888999999999
Q ss_pred HHHHHHHHHHH
Q 027985 168 QVFFSIAREIK 178 (216)
Q Consensus 168 ~l~~~l~~~~~ 178 (216)
+-|.||.+.+.
T Consensus 168 eglswlsnn~~ 178 (180)
T KOG0071|consen 168 EGLSWLSNNLK 178 (180)
T ss_pred HHHHHHHhhcc
Confidence 99999988763
No 194
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=4.5e-20 Score=145.54 Aligned_cols=161 Identities=22% Similarity=0.206 Sum_probs=121.3
Q ss_pred ccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc----
Q 027985 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT---- 81 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---- 81 (216)
++...-...++++++|.|++|||||+|.|+++.. ..+..|++|.++....+.++| +.+.|+||+|..+.....
T Consensus 209 ~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iG 286 (454)
T COG0486 209 KQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIG 286 (454)
T ss_pred hhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHH
Confidence 3444456679999999999999999999998766 567899999999999999999 789999999976544332
Q ss_pred ----ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEE
Q 027985 82 ----TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFE 157 (216)
Q Consensus 82 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (216)
...+.++|+++||+|.+.+.+-.+..- +. ....+.|+++|.||.|+...... ..+....+.+++.
T Consensus 287 IeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~----~~-~~~~~~~~i~v~NK~DL~~~~~~------~~~~~~~~~~~i~ 355 (454)
T COG0486 287 IERAKKAIEEADLVLFVLDASQPLDKEDLAL----IE-LLPKKKPIIVVLNKADLVSKIEL------ESEKLANGDAIIS 355 (454)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCchhhHHH----HH-hcccCCCEEEEEechhccccccc------chhhccCCCceEE
Confidence 235678999999999998523222211 11 33447899999999999653221 1111222347899
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 027985 158 TSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
+|+++++|++.|.+.|.+.+...
T Consensus 356 iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 356 ISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEecCccCHHHHHHHHHHHHhhc
Confidence 99999999999999988887655
No 195
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=1.1e-19 Score=136.03 Aligned_cols=151 Identities=22% Similarity=0.203 Sum_probs=105.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM 89 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 89 (216)
+|+++|++|+|||||+++|++........+..+.+.....+.+++ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998765444445555556666666766 589999999964322 12234688999
Q ss_pred EEEEEEECCChh-hHHHHHHHHH--------------------------------------------HHHHh--------
Q 027985 90 GILLVYDVTDES-SFNNIRNWMR--------------------------------------------NIDQH-------- 116 (216)
Q Consensus 90 ~~i~v~d~~~~~-s~~~~~~~~~--------------------------------------------~l~~~-------- 116 (216)
++++|+|+++++ ....+.+.+. ...-+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 2222222221 11000
Q ss_pred -------------cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985 117 -------------AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 117 -------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
.....|+++|+||+|+.. .+++..+++. ..++++||+++.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS------IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC------HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 012368899999999843 3444445443 3589999999999999999988765
No 196
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=3.7e-19 Score=123.54 Aligned_cols=158 Identities=22% Similarity=0.322 Sum_probs=120.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCC--------Ccccc--ceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT--------TSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 81 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 81 (216)
.....||+|.|+.++||||+++++...... .+... ..+.-.....+.++++ ..+++++||||+++..+|
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHHHHHH
Confidence 456789999999999999999999876641 11111 1222222233344443 589999999999999999
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh--CCcEEEEe
Q 027985 82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY--GIKFFETS 159 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~S 159 (216)
.-.++.+.++|+++|.+++..+ .....++.+....+ +|++|.+||.|+.+ ....+.++++.+.. ..+++..+
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~---a~ppe~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFD---ALPPEKIREALKLELLSVPVIEID 159 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCC---CCCHHHHHHHHHhccCCCceeeee
Confidence 9999999999999999998888 55555565555432 89999999999965 45677777766655 68999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 027985 160 AKTNFNVEQVFFSIARE 176 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~ 176 (216)
+.++++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999988876655
No 197
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=1.8e-19 Score=154.32 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=108.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------cccccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITT 82 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~ 82 (216)
.....+|+|+|.+++|||||+|+|++... .....++.+.+.......+++ ..+.+|||||.+. +.....
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 34467899999999999999999998754 234456677666666666666 4789999999653 122233
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecC
Q 027985 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAK 161 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (216)
..++.+|++|+|+|+.+.-...+ ..|...+.. .+.|+++|+||+|+.... .....+. ..+. ..+++||+
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~-----~~~~~~~-~lg~~~~~~iSA~ 419 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE-----YDAAEFW-KLGLGEPYPISAM 419 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch-----hhHHHHH-HcCCCCeEEEECC
Confidence 46789999999999976322111 134444433 378999999999984311 1122222 2232 46899999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027985 162 TNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~ 179 (216)
+|.|+++++++|.+.+..
T Consensus 420 ~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCchHHHHHHHHhccc
Confidence 999999999999988743
No 198
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.83 E-value=6.4e-20 Score=136.75 Aligned_cols=184 Identities=17% Similarity=0.170 Sum_probs=122.1
Q ss_pred CCccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc----
Q 027985 3 TAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---- 78 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---- 78 (216)
+...|...+....+.|+|+|+|++|||||.|.+.+.++...+....|++....-+-..+. .++.|+||||.-.-.
T Consensus 60 ~~esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-TQlvf~DTPGlvs~~~~r~ 138 (379)
T KOG1423|consen 60 ALESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-TQLVFYDTPGLVSKKMHRR 138 (379)
T ss_pred cccCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-eEEEEecCCcccccchhhh
Confidence 344566667788999999999999999999999999997776666665555554433333 699999999932111
Q ss_pred --------cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC------------C
Q 027985 79 --------TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR------------A 138 (216)
Q Consensus 79 --------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~------------~ 138 (216)
......+..+|++++++|+++....-. .+.+..+..+. .+|-++|+||.|...... .
T Consensus 139 ~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~ 215 (379)
T KOG1423|consen 139 HHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGE 215 (379)
T ss_pred HHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccc
Confidence 011224567999999999986332211 12233444443 578899999999743211 1
Q ss_pred CC---HHHHHHHHHHh---------C----CcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhcccCCC
Q 027985 139 VP---TAKGQELADEY---------G----IKFFETSAKTNFNVEQVFFSIAREIKQRLVESDSKAEP 190 (216)
Q Consensus 139 ~~---~~~~~~~~~~~---------~----~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~ 190 (216)
+. .+..+.|.... + -.+|.+||.+|+||+++.++|...+.....+.+...-+
T Consensus 216 l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T 283 (379)
T KOG1423|consen 216 LAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVT 283 (379)
T ss_pred cchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccccc
Confidence 11 11122222111 1 14899999999999999999999887766666554433
No 199
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=1.5e-19 Score=150.29 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC----------------CeEEEEEEEeCCCcccccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD----------------GKRIKLQIWDTAGQERFRT 79 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~~ 79 (216)
.-|+++|.+++|||||+++|.+..+......+.+.+.....+..+ .....+.||||||++.+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 468999999999999999999887644322222211111111110 0001388999999999999
Q ss_pred ccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC---C--------CHHH--
Q 027985 80 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA---V--------PTAK-- 143 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~---~--------~~~~-- 143 (216)
++...++.+|++++|+|+++ +++++.+. .+.. .+.|+++++||+|+.+.... . ..+.
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 88889999999999999987 44444332 2222 26899999999998531100 0 0000
Q ss_pred ----------HHHHHH------------Hh--CCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 144 ----------GQELAD------------EY--GIKFFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 144 ----------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
...+.+ .. .++++++||++|+|+++|+.+|.......
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~ 218 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQY 218 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHH
Confidence 011111 11 25899999999999999999887655443
No 200
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=7.8e-20 Score=148.51 Aligned_cols=156 Identities=20% Similarity=0.114 Sum_probs=106.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC--CCC-----------------------------CccccceeeEEEEEEEEEC
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD--SFT-----------------------------TSFITTIGIDFKIRTIELD 60 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 60 (216)
....++|+++|..++|||||+.+|+.. ... .+...+.+.+.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 345699999999999999999999752 111 1123455666665555555
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHH--HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI--RNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 138 (216)
+ +.+.|||+||++.+.......++.+|++++|+|+++.++.... ..++. +..... ..|+++|+||+|+.+....
T Consensus 84 ~--~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~-~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 84 K--YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG-INQLIVAINKMDSVNYDEE 159 (426)
T ss_pred C--eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC-CCeEEEEEEChhccCccHH
Confidence 4 7899999999988766666677899999999999987533211 11111 222222 3578899999999642221
Q ss_pred ---CCHHHHHHHHHHhC-----CcEEEEecCCCCCHHHHHH
Q 027985 139 ---VPTAKGQELADEYG-----IKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 139 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 171 (216)
....+++.+++..+ +.++++||++|+|+.+++.
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 12345566666655 5799999999999987553
No 201
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.83 E-value=1.3e-19 Score=147.18 Aligned_cols=154 Identities=21% Similarity=0.137 Sum_probs=103.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCccccceeeEEEEEEEEECCe
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-------------------------------TTSFITTIGIDFKIRTIELDGK 62 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 62 (216)
..++|+++|.+++|||||+++|+.... ..+..++.|.+.....+..++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~- 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK- 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC-
Confidence 459999999999999999999973221 112245566666655555544
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC---
Q 027985 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWMRNIDQHAADNVNKILVGNKADMDESKRA--- 138 (216)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--- 138 (216)
+.+.||||||++.+.......++.+|++++|+|+++...+.. ...++..+... . ..|+++++||+|+.+....
T Consensus 84 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 84 -YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred -eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHHH
Confidence 789999999998776655566789999999999987312211 12222222222 1 2468999999998642211
Q ss_pred CCHHHHHHHHHHhC-----CcEEEEecCCCCCHHHHHH
Q 027985 139 VPTAKGQELADEYG-----IKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 139 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 171 (216)
...++++.+.+..+ +.++++||++|+|++++..
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 12344555555555 4699999999999987553
No 202
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=7.9e-20 Score=143.78 Aligned_cols=149 Identities=19% Similarity=0.145 Sum_probs=112.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYY 85 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~ 85 (216)
..|+++|.|++|||||+|+|++... ..+..|++|.+.......+.+. .|.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 6799999999999999999999877 4577889999999999888884 69999999966432 2223457
Q ss_pred ccccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985 86 RGAMGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKT 162 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
.++|++|||+|....-+-. .+.++ +. ..++|+++|+||+|... .+....-.-.+|. .++.+||..
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~---Lr---~~~kpviLvvNK~D~~~------~e~~~~efyslG~g~~~~ISA~H 149 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKI---LR---RSKKPVILVVNKIDNLK------AEELAYEFYSLGFGEPVPISAEH 149 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHH---HH---hcCCCEEEEEEcccCch------hhhhHHHHHhcCCCCceEeehhh
Confidence 7899999999997643322 22222 22 22689999999999631 2222222334554 799999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAREIK 178 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~~ 178 (216)
|.|+.+|++.+...+.
T Consensus 150 g~Gi~dLld~v~~~l~ 165 (444)
T COG1160 150 GRGIGDLLDAVLELLP 165 (444)
T ss_pred ccCHHHHHHHHHhhcC
Confidence 9999999999999885
No 203
>COG2262 HflX GTPases [General function prediction only]
Probab=99.82 E-value=3.5e-19 Score=138.21 Aligned_cols=169 Identities=24% Similarity=0.206 Sum_probs=129.2
Q ss_pred ccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------
Q 027985 5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------- 76 (216)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------- 76 (216)
..|.++.....+.|.++|..++|||||+|.|++...-.....+.|.+.....+.+.++ ..+.+.||-|.-.
T Consensus 182 ~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~ 260 (411)
T COG2262 182 PRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVE 260 (411)
T ss_pred HHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHH
Confidence 3566677888999999999999999999999988776666777778888888888754 4789999999321
Q ss_pred -cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcE
Q 027985 77 -FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKF 155 (216)
Q Consensus 77 -~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 155 (216)
|.+ .......+|+++.|+|++++...+.+..-...+.......+|+++|.||+|+..+.. ....+..... ..
T Consensus 261 AFks-TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~-~~ 333 (411)
T COG2262 261 AFKS-TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSP-NP 333 (411)
T ss_pred HHHH-HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCC-Ce
Confidence 222 223456799999999999998777777776777766666799999999999754222 1111111112 58
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985 156 FETSAKTNFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (216)
+.+||++|+|++.|++.|.+.+....
T Consensus 334 v~iSA~~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 334 VFISAKTGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred EEEEeccCcCHHHHHHHHHHHhhhcc
Confidence 99999999999999999998887543
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=2.9e-19 Score=149.15 Aligned_cols=156 Identities=21% Similarity=0.275 Sum_probs=111.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC--CCCC--------------ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD--SFTT--------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (216)
+|+|+|..++|||||+.+|+.. .+.. +...+.++......+.+.+ +.+.||||||+..+...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence 6899999999999999999852 2211 1123344444445556655 78999999999999888
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-------HhCC
Q 027985 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD-------EYGI 153 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~ 153 (216)
+...++.+|++++|+|+.+. .......|+..+... ++|+++|+||+|+.+........++..+.. ...+
T Consensus 81 v~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 88999999999999999863 334445566655543 689999999999864322212233333332 2346
Q ss_pred cEEEEecCCCC----------CHHHHHHHHHHHHH
Q 027985 154 KFFETSAKTNF----------NVEQVFFSIAREIK 178 (216)
Q Consensus 154 ~~~~~Sa~~~~----------~i~~l~~~l~~~~~ 178 (216)
+++++||++|. |+..+|+.|.+.+.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 79999999995 79999988887764
No 205
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=1.8e-19 Score=132.97 Aligned_cols=148 Identities=24% Similarity=0.170 Sum_probs=96.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-------------------------------ccccceeeEEEEEEEEECCeEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTT-------------------------------SFITTIGIDFKIRTIELDGKRIK 65 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (216)
+|+|+|.+++|||||+++|+...-.. +.....+.+.....+..++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 58999999999999999996432111 1124445555555555555 47
Q ss_pred EEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC---CCHH
Q 027985 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA---VPTA 142 (216)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~ 142 (216)
+.||||||+..+.......++.+|++|+|+|+.++.... ....+..+... . ..++++|+||+|+.+.... ....
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 899999999887665666788999999999998653221 11222222222 1 2457778999998542211 1123
Q ss_pred HHHHHHHHhC---CcEEEEecCCCCCHHHH
Q 027985 143 KGQELADEYG---IKFFETSAKTNFNVEQV 169 (216)
Q Consensus 143 ~~~~~~~~~~---~~~~~~Sa~~~~~i~~l 169 (216)
+++.+.+.++ ..++++||++|.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 3445555555 35899999999998753
No 206
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=137.08 Aligned_cols=162 Identities=27% Similarity=0.214 Sum_probs=117.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----------- 81 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------- 81 (216)
..++|+|+|.|++|||||+|+|+++.- .....+++|.+.....+++++. ++.++||+|...-....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 579999999999999999999998765 5567888889999899999885 78999999954322221
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC---HHHHHHHHHHhC-CcEEE
Q 027985 82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP---TAKGQELADEYG-IKFFE 157 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~-~~~~~ 157 (216)
...+..+|++++|+|+..+-+.++.+- ...+.. .+.++++|+||.|+.+...... ..+++......+ .++++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRI-AGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHH-HHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 124567999999999998755554321 222222 3789999999999866321111 122222222223 58999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHH
Q 027985 158 TSAKTNFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (216)
+||.++.++.++|+.+........
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhc
Confidence 999999999999999877765543
No 207
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=9e-19 Score=146.12 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=109.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------ccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSD--DSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 79 (216)
..-+|+|+|..++|||||+++|+. ..+.... +...+.++......+....+.+.||||||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 356899999999999999999986 3332211 11222333333333333347999999999999998
Q ss_pred ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-------hC
Q 027985 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE-------YG 152 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~~ 152 (216)
.+..+++.+|++|+|+|+.+.... ....++..+.. .++|.++++||+|+.........+++..+... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 899999999999999999874322 22333333333 36899999999998654333333344444322 34
Q ss_pred CcEEEEecCCCC----------CHHHHHHHHHHHHH
Q 027985 153 IKFFETSAKTNF----------NVEQVFFSIAREIK 178 (216)
Q Consensus 153 ~~~~~~Sa~~~~----------~i~~l~~~l~~~~~ 178 (216)
++++.+||++|. |+..+++.|++.+.
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 679999999998 57888887776664
No 208
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.81 E-value=2.5e-19 Score=144.40 Aligned_cols=163 Identities=16% Similarity=0.161 Sum_probs=104.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCC---CccccceeeEEEEEEE--------------EE----CC------eEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT---TSFITTIGIDFKIRTI--------------EL----DG------KRIK 65 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~---~~~~~~~~~~~~~~~~--------------~~----~~------~~~~ 65 (216)
+..++|+++|..++|||||+++|.+.... ++.....+.......+ .. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 45689999999999999999999754221 1212222222111100 00 11 1257
Q ss_pred EEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHHHH
Q 027985 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAKG 144 (216)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~ 144 (216)
+.+||+||++.+...+......+|++++|+|++++.......+.+..+... . ..|+++|+||+|+.+.... ...+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-g-i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-G-IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-C-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 999999999998877777888899999999998643112222223323222 1 2468999999998642111 112333
Q ss_pred HHHHHHh---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985 145 QELADEY---GIKFFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 145 ~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
..+.... +++++++||++|+|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 4444332 46899999999999999999988765
No 209
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.81 E-value=8.6e-19 Score=147.00 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=107.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC---CCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD---SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
-|+++|..++|||||+++|++. .+.++...+.|++.....+...+. ..+.|||+||++.+.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 5789999999999999999864 334445556666555444444332 368999999999887767777889999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC-CCCHHHHHHHHHHhC---CcEEEEecCCCCC
Q 027985 94 VYDVTDE---SSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR-AVPTAKGQELADEYG---IKFFETSAKTNFN 165 (216)
Q Consensus 94 v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~ 165 (216)
|+|+++. ++.+.+ ..+... +.| +++|+||+|+.+... ....++++.+....+ .++|++||++|+|
T Consensus 81 VVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 81 VVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 9999863 333332 222222 345 578999999864211 112234444544444 6899999999999
Q ss_pred HHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREI 177 (216)
Q Consensus 166 i~~l~~~l~~~~ 177 (216)
++++++.|.+..
T Consensus 154 I~~L~~~L~~~~ 165 (614)
T PRK10512 154 IDALREHLLQLP 165 (614)
T ss_pred CHHHHHHHHHhh
Confidence 999999987654
No 210
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.81 E-value=5.7e-19 Score=120.00 Aligned_cols=136 Identities=25% Similarity=0.295 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc----ccccccccccccccEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAYYRGAMGI 91 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~ 91 (216)
-||+++|+.|+|||||+++|.+... .+..|... .+.+ .++||||.. .+..-......++|++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i-------~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V 67 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAI-------EYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVV 67 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC--CcCcccee-------Eecc-----cEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence 3799999999999999999998776 23333222 2222 236999932 2222233345689999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQVF 170 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~ 170 (216)
++|.|++++.+.-. ..+.... ..|+|-|+||+|+.. .....+.++.+.+..|+ .+|.+|+.+|+|+++|.
T Consensus 68 ~ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~--~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 68 LLLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPS--DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELK 138 (143)
T ss_pred EEEecCCCCCccCC-----chhhccc--CCCEEEEEECccCcc--chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHH
Confidence 99999998643110 1122222 579999999999963 23456677788888886 78999999999999999
Q ss_pred HHHH
Q 027985 171 FSIA 174 (216)
Q Consensus 171 ~~l~ 174 (216)
++|.
T Consensus 139 ~~L~ 142 (143)
T PF10662_consen 139 DYLE 142 (143)
T ss_pred HHHh
Confidence 9874
No 211
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.80 E-value=2.5e-19 Score=118.69 Aligned_cols=154 Identities=25% Similarity=0.388 Sum_probs=119.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+..++|+++|-.++|||||+..|.+..... ..|+.+ +....+..++. +.+.+||.+|+...+..|..++.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h-ltpT~G--Fn~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH-LTPTNG--FNTKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh-ccccCC--cceEEEeecCc-EEEEEEecCCccccchhhhhhhhccceEE
Confidence 567999999999999999999998876532 344444 66677777765 79999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh--------CCcEEEEecCCC
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEY--------GIKFFETSAKTN 163 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~ 163 (216)
||+|.+|...++.+...+-++..- ....+|+.+.+||.|+..... ....+.+. -+.+-+||+..+
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~------~eeia~klnl~~lrdRswhIq~csals~ 164 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK------VEEIALKLNLAGLRDRSWHIQECSALSL 164 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc------hHHHHHhcchhhhhhceEEeeeCccccc
Confidence 999999998888887766655432 233689999999999843221 12222222 246889999999
Q ss_pred CCHHHHHHHHHHH
Q 027985 164 FNVEQVFFSIARE 176 (216)
Q Consensus 164 ~~i~~l~~~l~~~ 176 (216)
+|+..-.+|+...
T Consensus 165 eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 165 EGSTDGSDWVQSN 177 (185)
T ss_pred cCccCcchhhhcC
Confidence 9998888887654
No 212
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=2e-18 Score=125.72 Aligned_cols=147 Identities=20% Similarity=0.170 Sum_probs=97.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
.++|+++|..++|||||+++|+.... ..+.....+.+.....+..+ ..++.++||||+..+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--NRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC--CeEEEEEECcCHHHHH
Confidence 47899999999999999999975310 11123444444443444333 3588999999998877
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--CCCHHHHHHHHHHhC---
Q 027985 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEYG--- 152 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~--- 152 (216)
......+..+|++++|+|+...-. ......+..+... +.| +++++||+|+..... .....+++.+....+
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 767777889999999999976422 2222333334333 566 778899999853221 112234555555443
Q ss_pred --CcEEEEecCCCCCHH
Q 027985 153 --IKFFETSAKTNFNVE 167 (216)
Q Consensus 153 --~~~~~~Sa~~~~~i~ 167 (216)
++++++||.+|.|+.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 679999999999864
No 213
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=130.00 Aligned_cols=156 Identities=18% Similarity=0.229 Sum_probs=119.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc----cccc---ccccccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTIT---TAYYRGA 88 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~ 88 (216)
-.|.++|.|++|||||+++|...+.....++++|......++.+++. .++.+-|.||.-+- ..+= ...+..+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 35789999999999999999998887788888888888888888765 35999999994332 1222 2345679
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985 89 MGILLVYDVTDE---SSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKT 162 (216)
Q Consensus 89 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
++++||+|++.+ ..++.+...+.++..+. ....|.++|+||+|+++. ....++++.+...- .++++||+.
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea----e~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA----EKNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH----HHHHHHHHHHHcCCCcEEEeeecc
Confidence 999999999988 77777777666665443 236799999999998532 22335667776664 499999999
Q ss_pred CCCHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIARE 176 (216)
Q Consensus 163 ~~~i~~l~~~l~~~ 176 (216)
++|+.++++.|.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999887653
No 214
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.80 E-value=3.6e-19 Score=132.40 Aligned_cols=147 Identities=18% Similarity=0.105 Sum_probs=94.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCccccceeeEEEEEEEEECCeEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF-------------------------------TTSFITTIGIDFKIRTIELDGKRIK 65 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (216)
+|+++|..++|||||+.+|+.... ..+.....+.+.....+.+.+ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 489999999999999999852210 111233445555555566655 68
Q ss_pred EEEEeCCCccccccccccccccccEEEEEEECCChhh------HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--C
Q 027985 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS------FNNIRNWMRNIDQHAADNVNKILVGNKADMDESK--R 137 (216)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~ 137 (216)
+.+||+||+..+...+...++.+|++|+|+|+.+... .......+..... .. ..|+++++||+|+.... .
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LG-VKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cC-CCeEEEEEEccccccccccH
Confidence 9999999988776666667788999999999987421 1112222222222 21 36888999999986311 1
Q ss_pred C---CCHHHHHHHHHHhC-----CcEEEEecCCCCCHH
Q 027985 138 A---VPTAKGQELADEYG-----IKFFETSAKTNFNVE 167 (216)
Q Consensus 138 ~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 167 (216)
. ...+.++.+....+ ++++++||++|+|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 11222333344443 569999999999987
No 215
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=9.7e-19 Score=140.98 Aligned_cols=165 Identities=17% Similarity=0.200 Sum_probs=103.6
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCC---CCccccceeeEEEEEEEEE------------------C--C----eE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIRTIEL------------------D--G----KR 63 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~------------------~--~----~~ 63 (216)
.....++|+++|..++|||||+.+|.+... ..+.....+.........+ + + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 445669999999999999999999965322 1222233333322111111 0 0 02
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHH
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTA 142 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~ 142 (216)
..+.|||+||++.+..........+|++++|+|+.++.........+..+... . ..|+++|+||+|+.+.... ...+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~-i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-G-IKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-C-CCcEEEEEEeeccccchhHHHHHH
Confidence 57999999999887665555666789999999998642111111122222222 1 2468999999998652211 1123
Q ss_pred HHHHHHHHh---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985 143 KGQELADEY---GIKFFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 143 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
.++.+.+.. +.+++++||++|+|+++++++|...+
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 344444332 46899999999999999999988765
No 216
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.79 E-value=2.3e-18 Score=122.73 Aligned_cols=151 Identities=17% Similarity=0.231 Sum_probs=94.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTAYYR 86 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 86 (216)
.|+++|.+|+|||||++.+.+........++.+.+.....+..++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996544333333333333333444443 899999999533 2222222332
Q ss_pred ---cccEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHH--HhCCcEEEE
Q 027985 87 ---GAMGILLVYDVTDESSF--NNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKGQELAD--EYGIKFFET 158 (216)
Q Consensus 87 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~--~~~~~~~~~ 158 (216)
..+++++++|....... ..+.+| +... +.|+++|+||+|+..... ...........+ .....++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~---l~~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDW---LEEL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHH---HHHc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 46788899998765322 222233 3222 579999999999843211 111122222222 223589999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 027985 159 SAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~ 176 (216)
|++++.|+++++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998865
No 217
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=5.7e-18 Score=126.98 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=80.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC------------------ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTT------------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
+|+++|..|+|||||+++|+...... +.....+.......+.+.+ .++.+|||||+..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence 48999999999999999997531100 1112223333444455554 689999999999888
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
..+...++.+|++++|+|+.+.... ....++..+... +.|+++++||+|+..
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~ 130 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence 8888899999999999999875432 334455555443 689999999999853
No 218
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=4.2e-18 Score=142.18 Aligned_cols=158 Identities=18% Similarity=0.196 Sum_probs=100.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEE--EEEEEEE----CCeEE----------EEEEEeCCCccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDF--KIRTIEL----DGKRI----------KLQIWDTAGQERFR 78 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~----------~~~i~D~~G~~~~~ 78 (216)
...|+++|.+++|||||+++|.+..+........+... +...... .+..+ .+.||||||++.+.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 45799999999999999999987654332222111111 1111110 01111 27899999999999
Q ss_pred cccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCCCC----------HH--
Q 027985 79 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES-KRAVP----------TA-- 142 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-~~~~~----------~~-- 142 (216)
.++...++.+|++++|+|+++ +++++.+. .+.. .+.|+++++||+|+... ..... ..
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v 158 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV 158 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence 888888899999999999987 45554442 2222 36899999999998421 10000 00
Q ss_pred ---------HHHHHHHHh---------------CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985 143 ---------KGQELADEY---------------GIKFFETSAKTNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 143 ---------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (216)
++..+.... .+.++++||.+|+|++++++.+...+.+
T Consensus 159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~ 219 (586)
T PRK04004 159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR 219 (586)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence 000111111 2579999999999999999987655443
No 219
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.6e-19 Score=119.86 Aligned_cols=164 Identities=22% Similarity=0.373 Sum_probs=116.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.+...+|+++|-.|+||||+.-++-....... .|+.+ +....+.+.+ +++++||.+|+......|..++.+.|.+
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevvtt-kPtig--fnve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIG--FNVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCC--cCcccccccc--ccceeeEccCcccccHHHHHHhcccceE
Confidence 34568999999999999999877765554332 33333 4455555544 7999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCCCC--CCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNI-DQHAADNVNKILVGNKADMDESKRA--VPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
|||+|.+|...+......+..+ ..-.-.+..+++++||.|....... +.......-.+..-+.+|..||.+|+|+++
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 9999999988777665543333 2222235778889999998542111 111111111122226899999999999999
Q ss_pred HHHHHHHHHHHH
Q 027985 169 VFFSIAREIKQR 180 (216)
Q Consensus 169 l~~~l~~~~~~~ 180 (216)
.++||.+.+.++
T Consensus 170 ~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 170 AMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHhcc
Confidence 999999887643
No 220
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=9.4e-18 Score=126.72 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=120.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc-----ccccc---ccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTI---TTA 83 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~---~~~ 83 (216)
+-....|+|.|.||+|||||++.+++........|++|......++..+. .+++++||||.= +.+.+ ...
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 34678899999999999999999999999888899999899988888776 689999999921 11111 111
Q ss_pred cc-ccccEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEe
Q 027985 84 YY-RGAMGILLVYDVTD--ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-IKFFETS 159 (216)
Q Consensus 84 ~~-~~~d~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~S 159 (216)
.+ .-.++++|++|.+. ..+++.....+..+...+. .|+++|+||+|..+. ...+++.......+ .....++
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~---e~~~~~~~~~~~~~~~~~~~~~ 317 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADE---EKLEEIEASVLEEGGEEPLKIS 317 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccch---hHHHHHHHHHHhhcccccccee
Confidence 22 23677999999875 4677777778888888775 799999999998641 12233333344344 4578888
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 027985 160 AKTNFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~~ 181 (216)
+..+.+++.+.+.+.....+-.
T Consensus 318 ~~~~~~~d~~~~~v~~~a~~~~ 339 (346)
T COG1084 318 ATKGCGLDKLREEVRKTALEPL 339 (346)
T ss_pred eeehhhHHHHHHHHHHHhhchh
Confidence 8999999988887777655443
No 221
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=2.2e-17 Score=117.23 Aligned_cols=159 Identities=20% Similarity=0.232 Sum_probs=107.8
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCC--CCCccccceeeEEEEEEEEECCeEEEEEEEeCCC----------cccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERF 77 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~ 77 (216)
...+....|+++|.+++|||||||+|+++. ...+..|+.| .....+.+++ .+.++|.|| .+.+
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrT--q~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w 93 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRT--QLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKW 93 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCcc--ceeEEEEecC---cEEEEeCCCcccccCCHHHHHHH
Confidence 345577899999999999999999999977 4566677766 4445566666 488999999 2334
Q ss_pred ccccccccc---cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--
Q 027985 78 RTITTAYYR---GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-- 152 (216)
Q Consensus 78 ~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 152 (216)
..+...++. +..++++++|+..+-...+. +.++.+... ++|+++|+||+|..... .....+...++...
T Consensus 94 ~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~~~--~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 94 KKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLKKS--ERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCChh--HHHHHHHHHHHHhcCC
Confidence 444444554 35678888999765333332 333444443 79999999999975411 11222233333332
Q ss_pred --Cc--EEEEecCCCCCHHHHHHHHHHHHHH
Q 027985 153 --IK--FFETSAKTNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 153 --~~--~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (216)
.. ++.+|+..+.|++++...|.+.+..
T Consensus 168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 22 8889999999999999998877643
No 222
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.77 E-value=8.3e-18 Score=138.13 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=121.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--c
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--R 86 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~ 86 (216)
..+|+++|+||+|||||+|+|++........|+.|.+.....+...+. .++++|.||....... ...++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 356999999999999999999999988889999999999999988885 6999999995543322 12232 3
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNV 166 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (216)
..|++|-|+|+++-+.--.+ ..+...-+.|+++++|++|... +.-..-+.+.+.+..|+++++++|++|+|+
T Consensus 81 ~~D~ivnVvDAtnLeRnLyl------tlQLlE~g~p~ilaLNm~D~A~--~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYL------TLQLLELGIPMILALNMIDEAK--KRGIRIDIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCCEEEEEcccchHHHHHHH------HHHHHHcCCCeEEEeccHhhHH--hcCCcccHHHHHHHhCCCEEEEEeecCCCH
Confidence 57999999999875432221 2233333789999999999744 444456677888999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027985 167 EQVFFSIAREIKQ 179 (216)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (216)
+++...+.+....
T Consensus 153 ~~l~~~i~~~~~~ 165 (653)
T COG0370 153 EELKRAIIELAES 165 (653)
T ss_pred HHHHHHHHHhccc
Confidence 9999988765443
No 223
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=6.3e-18 Score=125.30 Aligned_cols=147 Identities=22% Similarity=0.258 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCc-------------------cccceeeEEEEEEEEE---CCeEEEEEEEeCCCc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTS-------------------FITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 74 (216)
+|+|+|..++|||||+++|+....... .....+.......+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986443221 1111222222222222 345689999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC-----------HHH
Q 027985 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP-----------TAK 143 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~-----------~~~ 143 (216)
..+.......++.+|++++|+|+.+..+... ..++..+.. .+.|+++|+||+|+........ .+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~ 157 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE 157 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence 9888778888999999999999987654432 333333332 2589999999999752111111 122
Q ss_pred HHHHHHHhCC-----------cEEEEecCCCCCHH
Q 027985 144 GQELADEYGI-----------KFFETSAKTNFNVE 167 (216)
Q Consensus 144 ~~~~~~~~~~-----------~~~~~Sa~~~~~i~ 167 (216)
+..++...+. .+++.|++.+.++.
T Consensus 158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 3333333322 27788999988765
No 224
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=1.5e-17 Score=133.60 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=103.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
....++|+++|..++|||||+++|++... ..+.....+.+.. .+.+......+.|+|+||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCCHH
Confidence 34569999999999999999999985311 1122344444443 33343333578999999998
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCCC--CHHHHHHHHHHhC
Q 027985 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKRAV--PTAKGQELADEYG 152 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~ 152 (216)
.+.......+..+|++++|+|+.+..... ..+.+..+... ++| +++++||+|+.+..... ..++++.+.+..+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 87666666678899999999998642221 22233333333 567 57889999986422211 1234555555554
Q ss_pred -----CcEEEEecCCCC--------CHHHHHHHHHHHH
Q 027985 153 -----IKFFETSAKTNF--------NVEQVFFSIAREI 177 (216)
Q Consensus 153 -----~~~~~~Sa~~~~--------~i~~l~~~l~~~~ 177 (216)
++++++||++|. ++.++++.|.+.+
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 579999999983 4555555555443
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.76 E-value=4.3e-17 Score=121.18 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccc--------------cceeeEEEE------------------------EEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFI--------------TTIGIDFKI------------------------RTIE 58 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~--------------~~~~~~~~~------------------------~~~~ 58 (216)
||+++|..++|||||+++|....+..... .+.+..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998765533211 011100000 1112
Q ss_pred ECCeEEEEEEEeCCCccccccccccccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985 59 LDGKRIKLQIWDTAGQERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (216)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 136 (216)
..+ ..+.++|+||++.+.......+. .+|++++|+|+..+.. .....++..+... ++|+++|+||+|+.+..
T Consensus 81 ~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KSS--KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eCC--cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHH
Confidence 222 47899999999887655444443 6899999999876433 2223333334333 68999999999985321
Q ss_pred C-CCCHHHHHHHHHH--------------------------hCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 137 R-AVPTAKGQELADE--------------------------YGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 137 ~-~~~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
. ......++.+.+. ...++|.+|+.+|+|+++++..|..
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1 1111222222221 1148999999999999999988754
No 226
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.76 E-value=7.1e-17 Score=121.66 Aligned_cols=156 Identities=22% Similarity=0.197 Sum_probs=115.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccccccccc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYY 85 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~ 85 (216)
...-+|+++|.|++|||||++.|++........+++|.+.....+.++| .+++|.|+||.-. .........
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 4457899999999999999999999998888888888889999999988 6999999999332 123455678
Q ss_pred ccccEEEEEEECCChhh-HHHHHH--------------------------------------------HHHHHHHhcC--
Q 027985 86 RGAMGILLVYDVTDESS-FNNIRN--------------------------------------------WMRNIDQHAA-- 118 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~l~~~~~-- 118 (216)
|+||++++|+|+..... .+.+.+ .+.+..-+++
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999975332 222211 1111111110
Q ss_pred -------------------CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 119 -------------------DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 119 -------------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
.-+|.++|.||.|+.. .+....+.+.. ..+++||..+.|+++|.+.|.+.+-
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG------LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 1367899999999854 33444444444 6999999999999999999888774
No 227
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=2.9e-17 Score=132.07 Aligned_cols=160 Identities=17% Similarity=0.140 Sum_probs=103.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcC-------CC---------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD-------SF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
+....++|+++|.+++|||||+++|++. .+ ..+...+.+.+.....+..+ ..++.|+||||+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~--~~~i~~iDtPGh 85 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA--NRHYAHVDCPGH 85 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC--CcEEEEEECCCH
Confidence 3456799999999999999999999852 00 11223444444433333333 357899999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCC--CCCHHHHHHHHHHh
Q 027985 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKI-LVGNKADMDESKR--AVPTAKGQELADEY 151 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~--~~~~~~~~~~~~~~ 151 (216)
+.+.......+..+|++++|+|+.+... ....+.+..+... ++|.+ +++||+|+.+... +....+++.+....
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 8876666677889999999999986422 2222333333322 57765 5799999864211 11123455555554
Q ss_pred C-----CcEEEEecCCCC----------CHHHHHHHHHHH
Q 027985 152 G-----IKFFETSAKTNF----------NVEQVFFSIARE 176 (216)
Q Consensus 152 ~-----~~~~~~Sa~~~~----------~i~~l~~~l~~~ 176 (216)
+ ++++++||.+|. ++.+|++.|.+.
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 162 DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 3 578999999985 455555555543
No 228
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.74 E-value=5.5e-17 Score=123.14 Aligned_cols=164 Identities=17% Similarity=0.174 Sum_probs=116.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc----cc---ccccccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TI---TTAYYRGAM 89 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~---~~~~~~~~d 89 (216)
.|.++|.|++||||||+.+++.......+|++|.......+..++. -.|.+-|.||.-+-. .+ ...++..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-ESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-CcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 4678999999999999999998887777778777788777777443 379999999943211 11 223456789
Q ss_pred EEEEEEECCChh---hHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEE-EEecCCC
Q 027985 90 GILLVYDVTDES---SFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFF-ETSAKTN 163 (216)
Q Consensus 90 ~~i~v~d~~~~~---s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~ 163 (216)
++++|+|++..+ ..++......++..+. -.+.|.+||+||+|+..+. +......+.+.+..+...+ .+|+.++
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 999999997544 3556555566665543 2368999999999974422 2223333444444444322 2999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 027985 164 FNVEQVFFSIAREIKQRLV 182 (216)
Q Consensus 164 ~~i~~l~~~l~~~~~~~~~ 182 (216)
+|++++...+.+.+.+...
T Consensus 319 ~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 319 EGLDELLRALAELLEETKA 337 (369)
T ss_pred cCHHHHHHHHHHHHHHhhh
Confidence 9999999999998887764
No 229
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=9.9e-17 Score=128.44 Aligned_cols=167 Identities=20% Similarity=0.206 Sum_probs=118.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECC-eEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
.+=|.++|.-..|||||+..+-.........-..|....-..+..+. ..-.+.|+|||||+.|..+......-+|++|+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 35678999999999999999988877665555555556656666541 11379999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH---HHHhC--CcEEEEecCCCCCHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQEL---ADEYG--IKFFETSAKTNFNVEQ 168 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---~~~~~--~~~~~~Sa~~~~~i~~ 168 (216)
|++++|.-.-+. .+.+......+.|+++.+||+|.++........+.+.. .+.++ ..++++||++|+|+++
T Consensus 85 VVa~dDGv~pQT----iEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~e 160 (509)
T COG0532 85 VVAADDGVMPQT----IEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDE 160 (509)
T ss_pred EEEccCCcchhH----HHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHH
Confidence 999988422222 22233333348999999999998643322111111111 12222 5799999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 027985 169 VFFSIAREIKQRLVESD 185 (216)
Q Consensus 169 l~~~l~~~~~~~~~~~~ 185 (216)
|++.+.-....+..+.+
T Consensus 161 LL~~ill~aev~elka~ 177 (509)
T COG0532 161 LLELILLLAEVLELKAN 177 (509)
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 99998777766644444
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=5.2e-17 Score=130.72 Aligned_cols=147 Identities=20% Similarity=0.169 Sum_probs=96.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCC----------------CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS----------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
....++|+++|..++|||||+++|++.. ...+...+.|.+.. .+.+.....++.||||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~--~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTA--HVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeE--EEEEcCCCEEEEEEECCchH
Confidence 3457999999999999999999997321 01122344555543 34444344689999999998
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCC--CCHHHHHHHHHHhC
Q 027985 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKI-LVGNKADMDESKRA--VPTAKGQELADEYG 152 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~--~~~~~~~~~~~~~~ 152 (216)
.|.......+..+|++++|+|+.+..... ..+.+..+... +.|.+ +++||+|+.+.... ...++++.+.+..+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 87665666677889999999998732222 22233333332 56655 68999998642211 11234566666554
Q ss_pred -----CcEEEEecCCCC
Q 027985 153 -----IKFFETSAKTNF 164 (216)
Q Consensus 153 -----~~~~~~Sa~~~~ 164 (216)
++++++||.++.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999875
No 231
>CHL00071 tufA elongation factor Tu
Probab=99.74 E-value=6.2e-17 Score=130.70 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=99.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
....++|+++|.+++|||||+++|++... ..+..++.+.+.....+..++ .++.|+|+||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN--RHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC--eEEEEEECCChH
Confidence 44569999999999999999999986411 122234555554444444333 578899999998
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--CCCHHHHHHHHHHhC
Q 027985 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEYG 152 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~ 152 (216)
.+.......+..+|++++|+|+...-. ....+.+..+... ++| +++++||+|+.+... +....++..+.+..+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 876666777889999999999976422 2222333333322 577 678899999864221 112234555555543
Q ss_pred -----CcEEEEecCCCCCH
Q 027985 153 -----IKFFETSAKTNFNV 166 (216)
Q Consensus 153 -----~~~~~~Sa~~~~~i 166 (216)
++++++|+.+|.++
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCCcceEEEcchhhcccc
Confidence 57999999998754
No 232
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.73 E-value=9.1e-18 Score=134.83 Aligned_cols=164 Identities=26% Similarity=0.359 Sum_probs=117.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
.-.++|+++|..|+||||||-.|....+.+...+-...-.....+. ...+...|+|++............++.+|++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvt--Pe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVT--PENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccC--cCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 3469999999999999999999999988765444332111122222 23366899999876655555577899999999
Q ss_pred EEEECCChhhHHHHHH-HHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-C-cEEEEecCCCCCHH
Q 027985 93 LVYDVTDESSFNNIRN-WMRNIDQHA--ADNVNKILVGNKADMDESKRAVPTAKGQELADEYG-I-KFFETSAKTNFNVE 167 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~-~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~-~~~~~Sa~~~~~i~ 167 (216)
+||+.+++.+++.+.. |+-.+++.. ..++|+|+|+||.|..+....-.......+...+. + .+|+|||++..++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~ 164 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS 164 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence 9999999999999875 666666554 25799999999999865433311112333333333 3 68999999999999
Q ss_pred HHHHHHHHHHH
Q 027985 168 QVFFSIAREIK 178 (216)
Q Consensus 168 ~l~~~l~~~~~ 178 (216)
++|....+.+.
T Consensus 165 e~fYyaqKaVi 175 (625)
T KOG1707|consen 165 ELFYYAQKAVI 175 (625)
T ss_pred hhhhhhhheee
Confidence 99988666554
No 233
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.73 E-value=3.6e-17 Score=132.91 Aligned_cols=150 Identities=20% Similarity=0.147 Sum_probs=102.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCccccceeeEEEEEEEEECC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-------------------------------TTSFITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (216)
...++|+++|..++|||||+.+|+...- ..+.....+.+.....+..
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-- 82 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-- 82 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC--
Confidence 3458999999999999999998863111 1112233344444444444
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhH-------HHHHHHHHHHHHhcCCCC-cEEEEEeCCCCC
Q 027985 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF-------NNIRNWMRNIDQHAADNV-NKILVGNKADMD 133 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~l~~~~~~~~-p~ivv~nK~D~~ 133 (216)
....+.|+|+|||+.|.......++.+|++|+|+|+.+. .+ ....+.+..+... ++ ++++++||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCC
Confidence 346899999999999988888899999999999999863 22 2333333323222 55 468889999975
Q ss_pred CCC-----CCCCHHHHHHHHHHhC-----CcEEEEecCCCCCHHH
Q 027985 134 ESK-----RAVPTAKGQELADEYG-----IKFFETSAKTNFNVEQ 168 (216)
Q Consensus 134 ~~~-----~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 168 (216)
+.. .....++++.+.+..+ +.++++||.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 211 1112455667777666 5799999999999854
No 234
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.73 E-value=1.8e-16 Score=116.05 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=96.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCcccccee-e--EEEEEEEEECCeEEEEEEEeCCCccccccc-----cccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIG-I--DFKIRTIELDGKRIKLQIWDTAGQERFRTI-----TTAYYR 86 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~ 86 (216)
+++|+|+|.+|+|||||+|+|++...........+ . ......+...+ ...+.+||+||....... ....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 47899999999999999999998654322111111 0 11111111111 237899999996532221 122366
Q ss_pred cccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC----------CCHHHHH----HHHHHh
Q 027985 87 GAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDESKRA----------VPTAKGQ----ELADEY 151 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~----------~~~~~~~----~~~~~~ 151 (216)
.+|+++++.+.. +... ..|+..+... +.|+++|+||+|+...... ...+.++ ......
T Consensus 80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 789888875432 2222 2344445443 5799999999998321111 0011111 111121
Q ss_pred C---CcEEEEecC--CCCCHHHHHHHHHHHHHHHHhhh
Q 027985 152 G---IKFFETSAK--TNFNVEQVFFSIAREIKQRLVES 184 (216)
Q Consensus 152 ~---~~~~~~Sa~--~~~~i~~l~~~l~~~~~~~~~~~ 184 (216)
+ -.+|.+|+. .+.|+..+.+.|+..+.++....
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~ 190 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHV 190 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHH
Confidence 2 378999998 57999999999999998776553
No 235
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=8.2e-17 Score=128.55 Aligned_cols=162 Identities=24% Similarity=0.248 Sum_probs=124.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC---------------CCccccceeeEEEEEEEEE-CCeEEEEEEEeCCCccc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF---------------TTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER 76 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~ 76 (216)
++.-++.|+-.-..|||||..+|+...- +.+.+.+.|..-....+.+ ++..+.++++|||||..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 5667889999999999999999863211 1223445554444444433 35668999999999999
Q ss_pred cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEE
Q 027985 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFF 156 (216)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (216)
|......-+.-|+++|+|+|+...-.-+.+.+++..+.. +..+|.|+||+|++.+..+.-..+++.+.......++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 999999999999999999999987666667666666654 6788999999999775554444555555555556899
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 027985 157 ETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
.+||++|.|+.++++.|++.+.
T Consensus 214 ~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred EEEeccCccHHHHHHHHHhhCC
Confidence 9999999999999999998875
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.73 E-value=3.9e-17 Score=133.66 Aligned_cols=154 Identities=21% Similarity=0.160 Sum_probs=98.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC---------------------------------ccccceeeEEEEEEEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---------------------------------SFITTIGIDFKIRTIE 58 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 58 (216)
....++|+|+|..++|||||+.+|+...-.. +...+.+++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4566999999999999999999996432110 0112234455444444
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 138 (216)
.++ .++.|+||||++.+.......+..+|++++|+|+...-.... .+.+..+... . ..|+++++||+|+.+....
T Consensus 104 ~~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~l-g-~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLL-G-IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHh-C-CCceEEEEEeeccccchhH
Confidence 444 589999999998876555566799999999999976422111 1111222222 1 2478889999998642222
Q ss_pred CCH---HHHHHHHHHh----CCcEEEEecCCCCCHHHHH
Q 027985 139 VPT---AKGQELADEY----GIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 139 ~~~---~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l~ 170 (216)
... .++..+.+.. ...++++||++|+|++++-
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 112 2222333333 3679999999999998653
No 237
>PLN03126 Elongation factor Tu; Provisional
Probab=99.72 E-value=1.3e-16 Score=130.23 Aligned_cols=149 Identities=17% Similarity=0.132 Sum_probs=99.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
....++|+++|..++|||||+++|+.... ..+.....+.+.....+..++ ..+.|+|+||++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHH
Confidence 45679999999999999999999985211 122334444444444444444 588999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--CCCHHHHHHHHHHh-
Q 027985 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEY- 151 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~- 151 (216)
.+.......+..+|++++|+|+.+... ....+++..+... ++| +++++||+|+.+... +...++++.+.+..
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 887777777889999999999986432 2223344434333 567 678899999864211 11123455555553
Q ss_pred ----CCcEEEEecCCCCCH
Q 027985 152 ----GIKFFETSAKTNFNV 166 (216)
Q Consensus 152 ----~~~~~~~Sa~~~~~i 166 (216)
+++++++|+.++.++
T Consensus 232 ~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 232 FPGDDIPIISGSALLALEA 250 (478)
T ss_pred CCcCcceEEEEEccccccc
Confidence 367999999988543
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.72 E-value=5.7e-17 Score=130.72 Aligned_cols=149 Identities=23% Similarity=0.197 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC---------------------------------CccccceeeEEEEEEEEECCe
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFT---------------------------------TSFITTIGIDFKIRTIELDGK 62 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 62 (216)
++|+++|..++|||||+.+|+...-. .+.....+.+.....+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 58999999999999999998632210 11122334555555555544
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC--
Q 027985 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP-- 140 (216)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~-- 140 (216)
.++.|+||||++.+.......+..+|++++|+|+........ .+.+..+... . ..++++++||+|+.+......
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~-~-~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLL-G-IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHc-C-CCcEEEEEEecccccchHHHHHH
Confidence 589999999999887666677889999999999976432211 1112222222 1 246888999999864222211
Q ss_pred -HHHHHHHHHHhC---CcEEEEecCCCCCHHHH
Q 027985 141 -TAKGQELADEYG---IKFFETSAKTNFNVEQV 169 (216)
Q Consensus 141 -~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l 169 (216)
.++...+.+..+ +.++++||++|+|+++.
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 122333334444 46999999999999863
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=8.9e-17 Score=122.61 Aligned_cols=112 Identities=21% Similarity=0.164 Sum_probs=81.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
+|+++|.+++|||||+++|+.... ..+.....+++.....+.+++ .++.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 489999999999999999963111 112334455555566666666 689999999998888
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
..+...++.+|++|+|+|+.+.-.... ...+..+... ++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~---~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY---NVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCEEEEEECCCCCC
Confidence 878889999999999999976432222 2333333333 689999999999854
No 240
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.71 E-value=1.2e-16 Score=129.90 Aligned_cols=151 Identities=19% Similarity=0.127 Sum_probs=100.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCC--C-----------------------------CCccccceeeEEEEEEEEECC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDS--F-----------------------------TTSFITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (216)
...++|+++|..++|||||+.+|+... . ..+.....+.+.....+..++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 456899999999999999999986411 0 112233445555444444444
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC-
Q 027985 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---F---NNIRNWMRNIDQHAADNVN-KILVGNKADMD- 133 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~- 133 (216)
..+.|+|+|||..|.......+..+|++++|+|+..... + ....+.+..+... ++| +|+++||+|..
T Consensus 85 --~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 85 --YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKT 159 (446)
T ss_pred --eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 689999999999988777788899999999999986421 0 2233333333333 555 57899999952
Q ss_pred -CCCC---CCCHHHHHHHHHHhC-----CcEEEEecCCCCCHHH
Q 027985 134 -ESKR---AVPTAKGQELADEYG-----IKFFETSAKTNFNVEQ 168 (216)
Q Consensus 134 -~~~~---~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 168 (216)
+... ....++++.+....+ ++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2111 122333444444433 5799999999999864
No 241
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=3.8e-16 Score=125.57 Aligned_cols=148 Identities=18% Similarity=0.142 Sum_probs=97.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
....++|+++|..++|||||+++|++... ..+...+.+.+.....+..++ .++.|+||||+.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~~ 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK--RHYAHVDCPGHA 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC--eEEEEEECCCHH
Confidence 45679999999999999999999986311 112244455554433333333 578999999998
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCC--CCHHHHHHHHHHh-
Q 027985 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKI-LVGNKADMDESKRA--VPTAKGQELADEY- 151 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~--~~~~~~~~~~~~~- 151 (216)
.+.......+..+|++++|+|+.++.. ......+..+... +.|.+ +++||+|+.+.... ....+++.+....
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 876666677889999999999976422 2223333434333 57876 57999998642111 1122344444443
Q ss_pred ----CCcEEEEecCCCCC
Q 027985 152 ----GIKFFETSAKTNFN 165 (216)
Q Consensus 152 ----~~~~~~~Sa~~~~~ 165 (216)
+++++++||.++.+
T Consensus 163 ~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 163 FPGDDTPIIRGSALKALE 180 (396)
T ss_pred CCccCCcEEEeecccccC
Confidence 36899999998753
No 242
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.71 E-value=1.1e-16 Score=118.43 Aligned_cols=164 Identities=18% Similarity=0.304 Sum_probs=104.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-----ccccccccccE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----ITTAYYRGAMG 90 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~ 90 (216)
||+++|+.+|||||+.+.+..+-. .....-..|.+.....+...+. +.+.|||.||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999999886643 2333333445555566655543 6999999999875433 35667899999
Q ss_pred EEEEEECCChh---hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--C---CHHHHHHHHHHhC---CcEEEEe
Q 027985 91 ILLVYDVTDES---SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA--V---PTAKGQELADEYG---IKFFETS 159 (216)
Q Consensus 91 ~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~---~~~~~~S 159 (216)
+|||+|+...+ .+..+...+..+..+.+ ++.+.+.+.|+|+..+..+ . ..+.+.......+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999998443 33444455555666554 7889999999998542211 1 1222333344445 6788888
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhh
Q 027985 160 AKTNFNVEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~~~~ 183 (216)
..+ +.+-+.|..+++.+..+...
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~~ 181 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLST 181 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHCC
T ss_pred CcC-cHHHHHHHHHHHHHcccHHH
Confidence 776 68899999988888755443
No 243
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.71 E-value=1.6e-16 Score=117.68 Aligned_cols=114 Identities=20% Similarity=0.220 Sum_probs=78.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--C--------------ccccceeeEEEEEEEEEC--------CeEEEEEEEeCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFT--T--------------SFITTIGIDFKIRTIELD--------GKRIKLQIWDTA 72 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 72 (216)
+|+|+|..++|||||+.+|+..... . +.....++......+.+. +..+.+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 5899999999999999999743211 0 111122222222223333 335789999999
Q ss_pred CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
|+..+.......++.+|++++|+|+.+....... ..+..... .++|+++|+||+|+..
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~~~p~ilviNKiD~~~ 139 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---ERVKPVLVINKIDRLI 139 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCcch
Confidence 9999988888999999999999999876544432 22222222 3679999999999853
No 244
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.71 E-value=2.2e-16 Score=120.94 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=93.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCc----------cccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---- 79 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---- 79 (216)
..++|+|+|.+|+|||||+|+|++..+... ..++.+.......+..++..+++.||||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876443 244445555666667778778999999999432110
Q ss_pred ----------------------ccccccc--cccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 80 ----------------------ITTAYYR--GAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 80 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
.....+. .+|+++|+++.+... +... .+.+..+. . .+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~---~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS---K-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---c-cCCEEEEEECCCcCC
Confidence 0112233 467788888776421 1111 12223232 2 689999999999843
Q ss_pred C-CCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985 135 S-KRAVPTAKGQELADEYGIKFFETSAK 161 (216)
Q Consensus 135 ~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (216)
. ........++..++..++.+|.....
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 1 22234555667777888888877653
No 245
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=2.7e-16 Score=123.85 Aligned_cols=159 Identities=25% Similarity=0.280 Sum_probs=120.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC---------------CCccccceeeEEEEEEEEE---CCeEEEEEEEeCCCc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF---------------TTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 74 (216)
.+.-+..++-.-..|||||..+|+.... .-+.+.+.|+......+.+ +|..+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 3444567888889999999999853211 2233455555555444444 457799999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-
Q 027985 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI- 153 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 153 (216)
-.|.......+..|.++++|+|++..-.-+.+.+.|..+.. +..++-|+||+|++.+..+... +++.+..|+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adpervk---~eIe~~iGid 159 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPERVK---QEIEDIIGID 159 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHHHHH---HHHHHHhCCC
Confidence 99999999999999999999999987777777787777765 5778999999999764443333 334444553
Q ss_pred --cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 154 --KFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 154 --~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
..+.+||++|.||+++++.|++.+.
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCC
Confidence 6899999999999999999998874
No 246
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.70 E-value=5.4e-16 Score=118.21 Aligned_cols=113 Identities=17% Similarity=0.146 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC--CC--------------------ccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSF--TT--------------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~--~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
-+|+|+|.+|+|||||+++|+...- .. +.....+.......+.+.+ +.+.+|||||
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~--~~i~liDTPG 80 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD--CVINLLDTPG 80 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC--EEEEEEECCC
Confidence 3699999999999999999974211 00 0011222333344455544 7899999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
+..+.......++.+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 988877667788999999999999864322 22333433332 2689999999999754
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=3.6e-16 Score=104.88 Aligned_cols=106 Identities=25% Similarity=0.267 Sum_probs=72.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc---------cccccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYYR 86 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~ 86 (216)
+|+|+|.+|+|||||+|+|++... .....+..+.......+.+++. .+.|+||||..... ......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998643 3333444444454455667774 56799999953211 11223447
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027985 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK 129 (216)
.+|+++||+|+.++. -+...+.+..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~-~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPI-TEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHS-HHHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCC-CHHHHHHHHHHh----cCCCEEEEEcC
Confidence 899999999987732 233334444452 47899999998
No 248
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.69 E-value=1.2e-15 Score=118.57 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=57.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEE---------------------CC-eEEEEEEEeCCCc-
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL---------------------DG-KRIKLQIWDTAGQ- 74 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~G~- 74 (216)
|+++|.|++|||||+++|++........|+.|.+........ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999988765544555554444433322 22 2368999999996
Q ss_pred ---ccccccccc---ccccccEEEEEEECC
Q 027985 75 ---ERFRTITTA---YYRGAMGILLVYDVT 98 (216)
Q Consensus 75 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 98 (216)
+....+... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 333333333 489999999999996
No 249
>PLN03127 Elongation factor Tu; Provisional
Probab=99.68 E-value=1.5e-15 Score=123.33 Aligned_cols=160 Identities=17% Similarity=0.114 Sum_probs=99.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC------C----------CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD------S----------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
....++|+++|..++|||||+++|++. . ...+..++.|.+.....+..+ ..++.|+||||+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA--KRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--CeEEEEEECCCcc
Confidence 346799999999999999999999622 1 112333555655544444443 3589999999998
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC--CCHHHHHHHHHHh-
Q 027985 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKRA--VPTAKGQELADEY- 151 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~- 151 (216)
.+-......+..+|++++|+|+.+..... ..+.+..+... +.| +|+++||+|+.+.... ....+++.+....
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 77655556667899999999997643221 22223333332 578 4678999998642210 1112233343332
Q ss_pred ----CCcEEEEecC---CCCC-------HHHHHHHHHHHH
Q 027985 152 ----GIKFFETSAK---TNFN-------VEQVFFSIAREI 177 (216)
Q Consensus 152 ----~~~~~~~Sa~---~~~~-------i~~l~~~l~~~~ 177 (216)
.++++++|+. +|.| +.+|++.|.+.+
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2578888875 5555 556666655543
No 250
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.68 E-value=2.7e-16 Score=127.58 Aligned_cols=166 Identities=14% Similarity=0.144 Sum_probs=106.0
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCC---CCccccceeeEEEEEEE---------------EECC-----------
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIRTI---------------ELDG----------- 61 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~----------- 61 (216)
.....+.|.++|.-..|||||+.+|++... .++...+.|.+.-.... ....
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 345679999999999999999999986432 33333333322211111 0000
Q ss_pred -----eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985 62 -----KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (216)
Q Consensus 62 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 136 (216)
....+.|+|+|||+.+.......+..+|++++|+|+.++.......+.+..+... . -.++++|+||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-g-i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-K-LKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-C-CCcEEEEEecccccCHH
Confidence 0136899999999988777777888999999999998632111222322222222 1 24688999999986421
Q ss_pred C-CCCHHHHHHHHHH---hCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 137 R-AVPTAKGQELADE---YGIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 137 ~-~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
. ....++++.+... .+.+++++||++|+|++.|++.|.+.+.
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 1 1112233333332 2468999999999999999998886543
No 251
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.67 E-value=5.9e-16 Score=131.43 Aligned_cols=152 Identities=22% Similarity=0.180 Sum_probs=96.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC---------------------------------ccccceeeEEEEEEEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---------------------------------SFITTIGIDFKIRTIE 58 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 58 (216)
....++|+++|.+++|||||+++|+...-.. +...+.+.+.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 3456899999999999999999997532211 0112233344444444
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 138 (216)
.++ .++.|+||||++.+.......+..+|++++|+|+....... ..+.+..+... . ..++++++||+|+.+....
T Consensus 101 ~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~-~-~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 101 TPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL-G-IRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh-C-CCeEEEEEEecccccchhH
Confidence 444 57889999999887655556788999999999997642211 11122222222 1 2578889999998642221
Q ss_pred CCH---HHHHHHHHHhC---CcEEEEecCCCCCHHH
Q 027985 139 VPT---AKGQELADEYG---IKFFETSAKTNFNVEQ 168 (216)
Q Consensus 139 ~~~---~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 168 (216)
... .++..+....+ ..++++||++|+|+++
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 111 22333344444 3699999999999875
No 252
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.67 E-value=2.7e-15 Score=124.04 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=79.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--------------------ccccceeeEEEEEEEEECCeEEEEEEEe
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSD--DSFTT--------------------SFITTIGIDFKIRTIELDGKRIKLQIWD 70 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~--~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (216)
...-+|+|+|.+++|||||+++|+. +.... +...+.+.......+.+++ +.+.+||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inliD 85 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLLD 85 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEEE
Confidence 4567999999999999999999963 11100 0011222333334455555 7899999
Q ss_pred CCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (216)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 133 (216)
|||+..+.......++.+|++|+|+|+.+.-.. ....++..... .++|+++++||+|+.
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 999998887777788999999999999874322 23334433333 378999999999974
No 253
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.8e-16 Score=107.99 Aligned_cols=153 Identities=18% Similarity=0.282 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
=|++++|-.++|||||++.|.+....+. .||.. .....+.+.+ ++++-+|.+||......|..++..+|++++.+
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred ceEEEEeecCCchhhHHHHHcccccccc-CCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 4899999999999999999987665433 23322 2333556766 78999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH---HHh-----------C---CcEEE
Q 027985 96 DVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELA---DEY-----------G---IKFFE 157 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~-----------~---~~~~~ 157 (216)
|+.|.+.+...+..++.+.... -...|+++.+||+|.+... ..++.+... +.. + ..+|.
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~---se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA---SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc---cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 9999999999888777765433 2479999999999986533 333322221 111 1 24788
Q ss_pred EecCCCCCHHHHHHHHHHH
Q 027985 158 TSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~ 176 (216)
||...+.+--+.|.|+.+.
T Consensus 173 csi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEccCccceeeeehhhh
Confidence 8988888888888887654
No 254
>PRK13351 elongation factor G; Reviewed
Probab=99.67 E-value=5.7e-16 Score=132.86 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=83.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCC--------C----------ccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT--------T----------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
+...+|+|+|..++|||||+++|+..... . +.....+.......+.+.+ ..+.+|||||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGH 83 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCc
Confidence 45689999999999999999999743210 0 0012223333334455554 68999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
..+...+...++.+|++++|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 98888888899999999999999886655544333 33333 2689999999999854
No 255
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=8e-16 Score=121.71 Aligned_cols=166 Identities=21% Similarity=0.194 Sum_probs=114.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-ccc--------c
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-RTI--------T 81 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~--------~ 81 (216)
-+..++|+|+|.||+|||||+|.|..... ..+..+++|.+.....++++| +.+.+.||+|..+. ... .
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence 34569999999999999999999998776 567888999999888999988 68999999996651 111 1
Q ss_pred ccccccccEEEEEEECC--ChhhHHHHHHHHHHHHHhcC------CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC-
Q 027985 82 TAYYRGAMGILLVYDVT--DESSFNNIRNWMRNIDQHAA------DNVNKILVGNKADMDESKRAVPTAKGQELADEYG- 152 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~l~~~~~------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~- 152 (216)
...+..+|++++|+|+. +.++...+.+.+........ .+.+++++.||.|+...-............. .+
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~ 421 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGR 421 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccC
Confidence 22467899999999994 33333333344444332221 2478999999999965322222211111111 11
Q ss_pred --C-cEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 153 --I-KFFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 153 --~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
. ...++|+++++|+++|...|.+.+...
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 3 345699999999999999988877643
No 256
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.66 E-value=7.1e-15 Score=107.62 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcc--ccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------ITT 82 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 82 (216)
++|+++|.+|+|||||+|++++....... .+..|.........+++ ..+.++||||...... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987653322 23344444444555665 4899999999543321 011
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCC-----CCHHHHHHHHHHhCCcE
Q 027985 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDESKRA-----VPTAKGQELADEYGIKF 155 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~ 155 (216)
......|++++|+++.. .+..+ ...++.+...... ..++++|.|+.|....... ......+.+.+..+-.+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 23467899999999876 22221 2233444333321 2478899999996432210 11245566666666667
Q ss_pred EEEecC-----CCCCHHHHHHHHHHHHHH
Q 027985 156 FETSAK-----TNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 156 ~~~Sa~-----~~~~i~~l~~~l~~~~~~ 179 (216)
+..+.+ .+.++++|++.+.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 666644 456788888888877765
No 257
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.7e-15 Score=118.70 Aligned_cols=175 Identities=18% Similarity=0.162 Sum_probs=121.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
.+.-|.|+|.-.-|||||+..|-+..+.....-+.|...--..+..+.+ -.++|.|||||..|..+......-+|++++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 4566889999999999999999887775444334433333334444433 489999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-------HHhC--CcEEEEecCCCC
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELA-------DEYG--IKFFETSAKTNF 164 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~~~~ 164 (216)
|+.++|.-.-+. .+.+......+.|+|+.+||+|.++. ..+.+..-. +.+| +.++++||++|+
T Consensus 231 VVAadDGVmpQT----~EaIkhAk~A~VpiVvAinKiDkp~a----~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 231 VVAADDGVMPQT----LEAIKHAKSANVPIVVAINKIDKPGA----NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEccCCccHhH----HHHHHHHHhcCCCEEEEEeccCCCCC----CHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 999988432222 22333333347999999999997542 233332222 2333 579999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhcccCCCcccccCC
Q 027985 165 NVEQVFFSIAREIKQRLVESDSKAEPQTIRISK 197 (216)
Q Consensus 165 ~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 197 (216)
|++.|.+.+.-...-.-.+-+.+-..++.-+..
T Consensus 303 nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES 335 (683)
T KOG1145|consen 303 NLDLLEEAILLLAEVMDLKADPKGPAEGWVIES 335 (683)
T ss_pred ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEe
Confidence 999999987776665555544444444444433
No 258
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.65 E-value=5.8e-15 Score=113.18 Aligned_cols=141 Identities=20% Similarity=0.238 Sum_probs=90.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCc------------------cccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTS------------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
+|+++|.+|+|||||+++|+....... .....+.......+.+++ +.+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 489999999999999999874321100 011223333444555555 689999999998877
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEE
Q 027985 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFET 158 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
..+...++.+|++++|+|+++......... +..+.. .+.|.++++||+|.... ...+....+.+..+..++.+
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~~~---~~~p~iivvNK~D~~~~---~~~~~~~~l~~~~~~~~~~~ 151 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKL-WEFADE---AGIPRIIFINKMDRERA---DFDKTLAALQEAFGRPVVPL 151 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHHH---cCCCEEEEEECCccCCC---CHHHHHHHHHHHhCCCeEEE
Confidence 777888999999999999987654433322 233333 26899999999998542 22334445555555544433
Q ss_pred e--cCCCCCH
Q 027985 159 S--AKTNFNV 166 (216)
Q Consensus 159 S--a~~~~~i 166 (216)
+ ..++.++
T Consensus 152 ~ip~~~~~~~ 161 (268)
T cd04170 152 QLPIGEGDDF 161 (268)
T ss_pred EecccCCCce
Confidence 3 3444443
No 259
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=3.6e-15 Score=116.09 Aligned_cols=153 Identities=20% Similarity=0.155 Sum_probs=103.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC-------------------------------CCCCccccceeeEEEEEEEEECC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD-------------------------------SFTTSFITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 61 (216)
-..++++|+|...+|||||+-+|+.+ ...++.+.+.|++.....+..
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-- 82 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-- 82 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec--
Confidence 35699999999999999999998532 112223444455554444444
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHH-----HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-----IRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 136 (216)
..+.+.|+|+|||..|-..+.....++|++|+|+|+.+.+.... ..+....+..... -..+||++||+|..+..
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wd 161 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccC
Confidence 44789999999999988888889999999999999987642221 1122223333333 34567788999997643
Q ss_pred CCCCH---HHHHHHHHHhC-----CcEEEEecCCCCCHHH
Q 027985 137 RAVPT---AKGQELADEYG-----IKFFETSAKTNFNVEQ 168 (216)
Q Consensus 137 ~~~~~---~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 168 (216)
+.... .++..+.+..+ +.|+++|+..|+|+.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 33222 22333444444 5699999999999754
No 260
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=8.1e-16 Score=113.80 Aligned_cols=165 Identities=17% Similarity=0.246 Sum_probs=107.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEE-EEECCeEEEEEEEeCCCccc-------ccccccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRT-IELDGKRIKLQIWDTAGQER-------FRTITTA 83 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~-------~~~~~~~ 83 (216)
...+++|+++|.+|+|||||||+|+.....+...-..+.+..... ..+++ -.+.|||+||..+ +......
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 456799999999999999999999965554433222222222222 23344 3799999999544 4455667
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------CCCCHHHHHHHH--------H
Q 027985 84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK------RAVPTAKGQELA--------D 149 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~--------~ 149 (216)
++...|++++++++.|+.---+...|.. +.... .+.++++++|.+|....- .......++.+. +
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~d-Vi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRD-VIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHH-HHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 7888999999999988654333333333 32222 247999999999974321 111111122221 1
Q ss_pred HhC--CcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 150 EYG--IKFFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 150 ~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
... .+++.++.+.+.|++++...++..+...
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 111 3788888999999999999999988743
No 261
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.63 E-value=4.8e-15 Score=122.59 Aligned_cols=116 Identities=19% Similarity=0.174 Sum_probs=78.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--------------------ccccceeeEEEEEEEEECCeEEEEEEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSD--DSFTT--------------------SFITTIGIDFKIRTIELDGKRIKLQIW 69 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~--~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~ 69 (216)
-....+|+|+|.+++|||||+++|+. +.... +...+.+.......+.+++ +.+.||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~--~~inli 85 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRD--CLVNLL 85 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCC--eEEEEE
Confidence 34567999999999999999999852 11100 0011222233333444444 789999
Q ss_pred eCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (216)
Q Consensus 70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 133 (216)
||||+..+.......++.+|++|+|+|+.+.- ......++..... .+.|+++++||+|+.
T Consensus 86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred ECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 99999888776677889999999999998641 1223344443333 368999999999983
No 262
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.63 E-value=1.6e-15 Score=120.18 Aligned_cols=172 Identities=22% Similarity=0.146 Sum_probs=126.4
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-----ccc----
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-----FRT---- 79 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----~~~---- 79 (216)
.....++-.++|+|.|++|||||++.++.........+++|...++..+.+ +...++++||||.-. .+.
T Consensus 162 PsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy--kYlrwQViDTPGILD~plEdrN~IEmq 239 (620)
T KOG1490|consen 162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY--KYLRWQVIDTPGILDRPEEDRNIIEMQ 239 (620)
T ss_pred CCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh--heeeeeecCCccccCcchhhhhHHHHH
Confidence 344667788999999999999999999998888888888887777776655 447899999999321 111
Q ss_pred --ccccccccccEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC--CCCCCCHHHHHHHHHHhCC
Q 027985 80 --ITTAYYRGAMGILLVYDVTD--ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE--SKRAVPTAKGQELADEYGI 153 (216)
Q Consensus 80 --~~~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~ 153 (216)
.....++.+ ++|+.|++. ..+++.....+..+...+. +.|+|+|+||+|+.. +..+...+.++.+....++
T Consensus 240 sITALAHLraa--VLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v 316 (620)
T KOG1490|consen 240 IITALAHLRSA--VLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV 316 (620)
T ss_pred HHHHHHHhhhh--heeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCc
Confidence 111233433 788888875 4677777778888888776 689999999999853 1222233445555555568
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985 154 KFFETSAKTNFNVEQVFFSIAREIKQRLVESD 185 (216)
Q Consensus 154 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~ 185 (216)
.++++|+.+.+|+.++.....+.+..+..+..
T Consensus 317 ~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~K 348 (620)
T KOG1490|consen 317 KVVQTSCVQEEGVMDVRTTACEALLAARVEQK 348 (620)
T ss_pred eEEEecccchhceeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888776666543
No 263
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.62 E-value=1.2e-15 Score=108.31 Aligned_cols=115 Identities=23% Similarity=0.417 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccccccc---ccccccEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTA---YYRGAMGI 91 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~~ 91 (216)
-.|+++|+.|+|||+|...|..+...+..... +... .+.+ ....-.+.++|+|||+........ +...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 46899999999999999999988554332221 1111 1222 112237899999999987754444 47889999
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCC
Q 027985 92 LLVYDVTD-ESSFNNIRNWMRNIDQH---AADNVNKILVGNKADMDE 134 (216)
Q Consensus 92 i~v~d~~~-~~s~~~~~~~~~~l~~~---~~~~~p~ivv~nK~D~~~ 134 (216)
|||+|... +..+..+.+++..+... ....+|++|++||.|+..
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 99999974 44556665554444332 245789999999999854
No 264
>PRK12739 elongation factor G; Reviewed
Probab=99.62 E-value=7.2e-15 Score=125.90 Aligned_cols=117 Identities=20% Similarity=0.143 Sum_probs=85.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC------------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
.+...+|+|+|.+++|||||+++|+.... ..+.....+.+.....+.+++ .++.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 44678999999999999999999964211 011244556666666777766 6899999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
+..+...+...++.+|++|+|+|+.+.-..... ..+..+.. .+.|+++++||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 988877788889999999999999875333222 22333333 3689999999999853
No 265
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.61 E-value=8.8e-15 Score=125.39 Aligned_cols=117 Identities=19% Similarity=0.129 Sum_probs=85.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCC------------------CccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
.+...+|+|+|.+++|||||+++|+...-. .+.....+.+.....+.+++ ..+.+|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence 445679999999999999999999632110 01123445556666666766 6899999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
+..+...+...++.+|++++|+|+.+....... ..+..+... +.|+++++||+|+..
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~---~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY---EVPRIAFVNKMDKTG 141 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc---CCCEEEEEECCCCCC
Confidence 988877788889999999999999875444332 233333332 689999999999864
No 266
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.60 E-value=4.6e-14 Score=112.92 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIEL---------------------D-GKRIKLQIWDTAG 73 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G 73 (216)
++|+++|.|++|||||+|+|++........++.|.+........ + .....++|||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988776545565555555543321 1 1236789999999
Q ss_pred cc----ccccccccc---cccccEEEEEEECC
Q 027985 74 QE----RFRTITTAY---YRGAMGILLVYDVT 98 (216)
Q Consensus 74 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 98 (216)
.. ....+-..+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 222222234 88999999999996
No 267
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=3.4e-14 Score=121.72 Aligned_cols=116 Identities=19% Similarity=0.132 Sum_probs=83.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC---C---------------CccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF---T---------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
.+...+|+|+|.+++|||||+++|+...- . .+.....+.+.....+.+.+ ..+.++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 45677999999999999999999963111 0 01244456666666677766 5899999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 133 (216)
+..+.......++.+|++|+|+|+...-..... ..+..+... +.|+++++||+|+.
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~~---~~p~iv~vNK~D~~ 140 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADKY---KVPRIAFVNKMDRT 140 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHHc---CCCEEEEEECCCCC
Confidence 988766677778899999999999765333332 223333333 67899999999985
No 268
>PRK09866 hypothetical protein; Provisional
Probab=99.58 E-value=1.6e-13 Score=113.10 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=71.8
Q ss_pred EEEEEeCCCcccc-----ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC
Q 027985 65 KLQIWDTAGQERF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAV 139 (216)
Q Consensus 65 ~~~i~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~ 139 (216)
++.|+||||.... .......+..+|+++||+|+....+..+ ....+.+... ....|+++|+||+|+.+. ...
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dr-eed 307 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDR-NSD 307 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCc-ccc
Confidence 6789999996542 2233457889999999999986433332 1223333332 223599999999998532 222
Q ss_pred CHHHHHHHHHHh----C---CcEEEEecCCCCCHHHHHHHHHH
Q 027985 140 PTAKGQELADEY----G---IKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 140 ~~~~~~~~~~~~----~---~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
..+.+..+.... . ..+|++||+.|.|++++++.|..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 344555443221 2 36999999999999999998877
No 269
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=6.9e-14 Score=99.62 Aligned_cols=155 Identities=23% Similarity=0.297 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc---cccEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR---GAMGIL 92 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i 92 (216)
-.|+++|+.+||||+|.-.|..+.+.... ..++.....+..+.. .++++|.|||.+.+.-...++. .+-++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 56899999999999999998877543322 224455555666553 5899999999987765555555 788899
Q ss_pred EEEECC-ChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCC-CC----HHHHHHH----------------
Q 027985 93 LVYDVT-DESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDESKRA-VP----TAKGQEL---------------- 147 (216)
Q Consensus 93 ~v~d~~-~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~-~~----~~~~~~~---------------- 147 (216)
||+|.. ......++.+++..+.... ...+|+++..||.|+..+... .. ..++..+
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 999874 3344455555444443322 456888889999998443211 00 0001000
Q ss_pred --------------HH--HhCCcEEEEecCCCCCHHHHHHHHHHH
Q 027985 148 --------------AD--EYGIKFFETSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 148 --------------~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (216)
.+ ...+.+.+.|++++ +++++-+||.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 00 12245888999888 999999998765
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.56 E-value=2.4e-14 Score=122.63 Aligned_cols=108 Identities=23% Similarity=0.198 Sum_probs=77.6
Q ss_pred EcCCCCcHHHHHHHHhcCCCC------------------CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccc
Q 027985 21 IGDSGVGKSCLLLRFSDDSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 82 (216)
Q Consensus 21 ~G~~~sGKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 82 (216)
+|.+++|||||+++|+...-. .+...+.+.......+.+++ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 599999999999999532110 01123445555556666666 6899999999988777778
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
..++.+|++++|+|+++........ .+..+.. .+.|+++|+||+|+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTET-VWRQAEK---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence 8899999999999998765544332 2233333 2689999999999853
No 271
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.56 E-value=4.6e-14 Score=107.70 Aligned_cols=149 Identities=23% Similarity=0.195 Sum_probs=106.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCC---------------------------------CccccceeeEEEEEEEEEC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT---------------------------------TSFITTIGIDFKIRTIELD 60 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 60 (216)
..++++.+|.-.-||||||-+|+...-. .+.+.+.|++..+..+..+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4689999999999999999998643110 0123344566655555444
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC
Q 027985 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP 140 (216)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~ 140 (216)
. -+|.|.|||||+.|...+......||++|+++|+. ..+....+....+..... -..+++.+||+||.+..++..
T Consensus 85 K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 85 K--RKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred c--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence 3 58999999999999999999999999999999994 334443344455555543 245677789999987665544
Q ss_pred HHH---HHHHHHHhC---CcEEEEecCCCCCHH
Q 027985 141 TAK---GQELADEYG---IKFFETSAKTNFNVE 167 (216)
Q Consensus 141 ~~~---~~~~~~~~~---~~~~~~Sa~~~~~i~ 167 (216)
.+. -..|+.+++ ..++++||..|+|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 433 445667777 479999999999874
No 272
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.54 E-value=1.3e-13 Score=108.61 Aligned_cols=159 Identities=19% Similarity=0.227 Sum_probs=114.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC--CCC--------------ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDS--FTT--------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
.-+|+|+-.-..|||||+..|+.+. |.. +.+.+.|+--...-+.+++ +++.|+|||||..|.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~--~~INIvDTPGHADFG 82 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG--TRINIVDTPGHADFG 82 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC--eEEEEecCCCcCCcc
Confidence 3478999999999999999997532 211 2233344333444456666 789999999999999
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-------h
Q 027985 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE-------Y 151 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~ 151 (216)
......+.-.|++++++|+.+..- ... .-.+.+....+.+.|+|+||+|.+.+....-.++..++... +
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpM-PQT---rFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPM-PQT---RFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCC-Cch---hhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 999999999999999999987422 111 12233334447788999999999776655555555555444 4
Q ss_pred CCcEEEEecCCC----------CCHHHHHHHHHHHHHH
Q 027985 152 GIKFFETSAKTN----------FNVEQVFFSIAREIKQ 179 (216)
Q Consensus 152 ~~~~~~~Sa~~~----------~~i~~l~~~l~~~~~~ 179 (216)
+++++..|+++| +++.-||+.|++++..
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 578999999877 4688889888888754
No 273
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.53 E-value=1.6e-13 Score=101.46 Aligned_cols=174 Identities=16% Similarity=0.175 Sum_probs=98.9
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-------ccccceeeEEEEEEEEE-----------------C-----
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-------SFITTIGIDFKIRTIEL-----------------D----- 60 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~-----------------~----- 60 (216)
.....++.|+|+|+.|||||||+++|....... +.+|....-.+...+.+ +
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 356678999999999999999999996432211 11111111111111111 1
Q ss_pred -------------------CeEEEEEEEeCCCccccc------cccccccc--cccEEEEEEECCCh-hhHHHHHHHHHH
Q 027985 61 -------------------GKRIKLQIWDTAGQERFR------TITTAYYR--GAMGILLVYDVTDE-SSFNNIRNWMRN 112 (216)
Q Consensus 61 -------------------~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~ 112 (216)
...+.+.|+||||+-+.- .+....+. .-.+++||+|.... .....+.+.+..
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 112468999999965421 12222222 24567888887432 222233343333
Q ss_pred HHHhcCCCCcEEEEEeCCCCCCCCCCCCH-HHHHHH---HH--------------------H-hCCcEEEEecCCCCCHH
Q 027985 113 IDQHAADNVNKILVGNKADMDESKRAVPT-AKGQEL---AD--------------------E-YGIKFFETSAKTNFNVE 167 (216)
Q Consensus 113 l~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~---~~--------------------~-~~~~~~~~Sa~~~~~i~ 167 (216)
.......+.|+++|.||+|+.+....... .+-+.| .+ - .++..+-||+.+|+|++
T Consensus 174 cSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 174 CSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 33333447999999999999653321110 000000 00 0 13578999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027985 168 QVFFSIAREIKQRLVE 183 (216)
Q Consensus 168 ~l~~~l~~~~~~~~~~ 183 (216)
++|..+-+.+.++..+
T Consensus 254 df~~av~~~vdEy~~~ 269 (366)
T KOG1532|consen 254 DFFTAVDESVDEYEEE 269 (366)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888777665433
No 274
>PTZ00258 GTP-binding protein; Provisional
Probab=99.53 E-value=1.9e-13 Score=108.40 Aligned_cols=87 Identities=21% Similarity=0.193 Sum_probs=66.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE---------------EEEEEEeCCCccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQER 76 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~ 76 (216)
+...++|+|+|.|++|||||+|+|++........|+.|.+.....+.+.+.. .++.++|+||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 4567899999999999999999999888776667888877777777665432 3589999999432
Q ss_pred cc-------cccccccccccEEEEEEECC
Q 027985 77 FR-------TITTAYYRGAMGILLVYDVT 98 (216)
Q Consensus 77 ~~-------~~~~~~~~~~d~~i~v~d~~ 98 (216)
-. ......++.+|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 11 11223567899999999974
No 275
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.53 E-value=4.5e-14 Score=92.03 Aligned_cols=138 Identities=24% Similarity=0.210 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc----cccccccccEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----TTAYYRGAMGI 91 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~~~~~~~~d~~ 91 (216)
-|++++|+.|+|||||.+.|.+...- +..+.. ++++++ -.+||||.--.... ......++|++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi 68 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVI 68 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCc----cccCCchhhhhhhHHHHHHHHHhhcccee
Confidence 47899999999999999999887652 222222 223221 13599994322222 23345689999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQVF 170 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~ 170 (216)
++|-+++++++.-. ..+.... ..|+|-|++|.|+++ ....+..+.+..+.|. .+|.+|+.++.|+++++
T Consensus 69 ~~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 69 IYVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAE---DADISLVKRWLREAGAEPIFETSAVDNQGVEELV 138 (148)
T ss_pred eeeecccCccccCC-----ccccccc--ccceEEEEecccccc---hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHH
Confidence 99999998755110 1111221 356888999999965 3445667778888885 89999999999999999
Q ss_pred HHHHHH
Q 027985 171 FSIARE 176 (216)
Q Consensus 171 ~~l~~~ 176 (216)
..|...
T Consensus 139 ~~L~~~ 144 (148)
T COG4917 139 DYLASL 144 (148)
T ss_pred HHHHhh
Confidence 987653
No 276
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.52 E-value=3.8e-13 Score=101.75 Aligned_cols=167 Identities=14% Similarity=0.262 Sum_probs=117.4
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
+-...-.|+|+|..++||||||.+|-+.. ...+..+.++....+.-+ +...++.+|-..|......+..+.+...
T Consensus 48 klpsgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~at 124 (473)
T KOG3905|consen 48 KLPSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPAT 124 (473)
T ss_pred cCCCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccccc
Confidence 34456789999999999999999998766 344555555555444332 2336788999989777666666555433
Q ss_pred ----cEEEEEEECCCh-hhHHHHHHHHHHHHHhcC---------------------------------------------
Q 027985 89 ----MGILLVYDVTDE-SSFNNIRNWMRNIDQHAA--------------------------------------------- 118 (216)
Q Consensus 89 ----d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--------------------------------------------- 118 (216)
.++|++.|.++| .-++.++.|...+..+..
T Consensus 125 s~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~ 204 (473)
T KOG3905|consen 125 SLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSA 204 (473)
T ss_pred CccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcc
Confidence 457888999987 445555555433322110
Q ss_pred ----------------CCCcEEEEEeCCCCCC----------CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 119 ----------------DNVNKILVGNKADMDE----------SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 119 ----------------~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
-++|+++|++|+|... +........++.|+..+|..+|.+|+++..||+-+..+
T Consensus 205 de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKY 284 (473)
T KOG3905|consen 205 DEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKY 284 (473)
T ss_pred ccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHH
Confidence 1678999999999721 12223445678888899999999999999999999999
Q ss_pred HHHHHHHH
Q 027985 173 IAREIKQR 180 (216)
Q Consensus 173 l~~~~~~~ 180 (216)
|.+..+-.
T Consensus 285 ivhr~yG~ 292 (473)
T KOG3905|consen 285 IVHRSYGF 292 (473)
T ss_pred HHHHhcCc
Confidence 99887643
No 277
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.51 E-value=8.4e-13 Score=99.51 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=74.1
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc-cccceeeEEEEEEEEECCeEEEEEEEeCCCccccc--c-c-----
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--T-I----- 80 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-~----- 80 (216)
......++|+|+|.+|+|||||+|+|++...... .....+..........++ ..+.+|||||..... . .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence 3566789999999999999999999998765332 222333444444445555 579999999965431 0 0
Q ss_pred --ccccc--ccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 027985 81 --TTAYY--RGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAAD--NVNKILVGNKADMD 133 (216)
Q Consensus 81 --~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~ 133 (216)
...++ ...++++||..++... ...+ ...++.+...... -.++++|.||+|..
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 11122 2578888887665422 1111 1223333332221 14689999999984
No 278
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.50 E-value=5.8e-13 Score=116.65 Aligned_cols=146 Identities=18% Similarity=0.199 Sum_probs=94.7
Q ss_pred cHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE----------------EEEEEEeCCCccccccccccccccccE
Q 027985 27 GKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR----------------IKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 27 GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
+||||+.++.+........-+.|.......+..+... -.+.||||||++.+..+....++.+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999877755544444444433333332100 138999999999998877778888999
Q ss_pred EEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-C--------------CHHHHH----H--
Q 027985 91 ILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-V--------------PTAKGQ----E-- 146 (216)
Q Consensus 91 ~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~--------------~~~~~~----~-- 146 (216)
+++|+|+++ +++++.+. .+.. .+.|+++|+||+|+.+.... . ...+.. .
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999986 34444332 2222 26899999999998531110 0 000000 0
Q ss_pred --HHH------------Hh--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985 147 --LAD------------EY--GIKFFETSAKTNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 147 --~~~------------~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (216)
+.. .+ .++++++||++|+||++|+.+|......
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~ 674 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK 674 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence 111 11 2589999999999999999887655443
No 279
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.50 E-value=1.4e-12 Score=102.08 Aligned_cols=125 Identities=19% Similarity=0.203 Sum_probs=86.0
Q ss_pred EEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCCh----------hhHHHHHHHHHHHHHh-cCCCCcEE
Q 027985 56 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWMRNIDQH-AADNVNKI 124 (216)
Q Consensus 56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~p~i 124 (216)
.+.+++ +.+.+||++|+......|..++.+++++|||+|+++. ..+......+..+... .-.+.|++
T Consensus 155 ~f~~~~--~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pil 232 (317)
T cd00066 155 KFTIKN--LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSII 232 (317)
T ss_pred EEEecc--eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEE
Confidence 344443 6899999999999999999999999999999999873 3333333334444332 22478999
Q ss_pred EEEeCCCCCCC--------------CC-CCCHHHHHHHHHH----------hCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985 125 LVGNKADMDES--------------KR-AVPTAKGQELADE----------YGIKFFETSAKTNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 125 vv~nK~D~~~~--------------~~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (216)
+++||.|+... .. .-..+.+..|... ..+..+.++|.+..+++.+|+.+.+.+.+
T Consensus 233 l~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~ 312 (317)
T cd00066 233 LFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ 312 (317)
T ss_pred EEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence 99999996211 11 1233343333322 12456778899999999999999988876
Q ss_pred HHh
Q 027985 180 RLV 182 (216)
Q Consensus 180 ~~~ 182 (216)
...
T Consensus 313 ~~l 315 (317)
T cd00066 313 NNL 315 (317)
T ss_pred HHh
Confidence 543
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.49 E-value=1.8e-13 Score=117.75 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=79.9
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcC---------------CCCC-ccccceeeEEE--EEEEEECCeEEEEEEEeCC
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD---------------SFTT-SFITTIGIDFK--IRTIELDGKRIKLQIWDTA 72 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~---------------~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~ 72 (216)
..+...+|+|+|..++|||||+++|+.. .+.. +.....++... ...+.+++..+.+.|||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 4456789999999999999999999742 1111 11112222221 1222344555899999999
Q ss_pred CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
|+..+.......++.+|++|+|+|+.+.-..... ..+..+.. .+.|+++++||+|...
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~---~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK---ENVKPVLFINKVDRLI 152 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH---cCCCEEEEEEChhccc
Confidence 9998877778889999999999999764222221 11222222 2578899999999854
No 281
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.47 E-value=1.7e-12 Score=105.38 Aligned_cols=166 Identities=15% Similarity=0.276 Sum_probs=112.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC--CeEEEEEEEeCCCcccccccccccccc----
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRG---- 87 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~---- 87 (216)
..-.|+|+|..++||||||.+|.+.. ...++.+.+|....+.-+ +...++.+|...|...+..+....+..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34689999999999999999987543 345566666666655332 223578999999877777666655543
Q ss_pred ccEEEEEEECCChhh-HHHHHHHHHHHHH-------------------------hcC-----------------------
Q 027985 88 AMGILLVYDVTDESS-FNNIRNWMRNIDQ-------------------------HAA----------------------- 118 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s-~~~~~~~~~~l~~-------------------------~~~----------------------- 118 (216)
--++|+|+|.+.|-. ++.+..|+..+.. +..
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 245888999988632 1222222211110 000
Q ss_pred --------------CCCcEEEEEeCCCCCCC---C-------CCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Q 027985 119 --------------DNVNKILVGNKADMDES---K-------RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 119 --------------~~~p~ivv~nK~D~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
-++|++||++|+|.... . ..+....++.|+..+|+.+|.+|++...+++.|+.+|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 14799999999997321 1 11333447778888999999999999999999999988
Q ss_pred HHHHHHHh
Q 027985 175 REIKQRLV 182 (216)
Q Consensus 175 ~~~~~~~~ 182 (216)
+.++....
T Consensus 261 h~l~~~~f 268 (472)
T PF05783_consen 261 HRLYGFPF 268 (472)
T ss_pred HHhccCCC
Confidence 88875543
No 282
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.47 E-value=1.9e-12 Score=99.14 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=72.5
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc------
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------ 81 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------ 81 (216)
+.+....++|+|+|.+|+||||++|+|++..... +...+.+..........++ ..+.++||||........
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHH
Confidence 3445678999999999999999999999876522 2222222222223334455 689999999965432111
Q ss_pred -cccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 027985 82 -TAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDE 134 (216)
Q Consensus 82 -~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~ 134 (216)
..++ ...|+++||..++.....+.-...+..+...++. -.++++|.|+.|..+
T Consensus 110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 1111 2589999996554321111111222333322211 246899999999753
No 283
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.47 E-value=2.4e-12 Score=101.50 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=88.3
Q ss_pred EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCCh----------hhHHHHHHHHHHHHHh-cCCC
Q 027985 52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWMRNIDQH-AADN 120 (216)
Q Consensus 52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~ 120 (216)
+....+.+++ +.+.+||++|+...+..|..++.+++++|||+|+++. ..+......+..+... .-.+
T Consensus 174 i~~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~ 251 (342)
T smart00275 174 IQETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFAN 251 (342)
T ss_pred eEEEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccC
Confidence 3334455554 5789999999999999999999999999999999863 2344444444444332 2347
Q ss_pred CcEEEEEeCCCCCC--------------CCCCCCHHHHHHHHHH-----h------CCcEEEEecCCCCCHHHHHHHHHH
Q 027985 121 VNKILVGNKADMDE--------------SKRAVPTAKGQELADE-----Y------GIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 121 ~p~ivv~nK~D~~~--------------~~~~~~~~~~~~~~~~-----~------~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
.|+++++||.|+.. ....-..+.+..|... . .+-.+.++|.+..+++.+|+.+.+
T Consensus 252 ~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~ 331 (342)
T smart00275 252 TSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKD 331 (342)
T ss_pred CcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHH
Confidence 89999999999721 1111123333333221 1 144678889999999999999988
Q ss_pred HHHHHHhh
Q 027985 176 EIKQRLVE 183 (216)
Q Consensus 176 ~~~~~~~~ 183 (216)
.+.+....
T Consensus 332 ~I~~~~l~ 339 (342)
T smart00275 332 IILQRNLK 339 (342)
T ss_pred HHHHHHHH
Confidence 88876543
No 284
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.46 E-value=6.9e-12 Score=91.86 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=109.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRG 87 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 87 (216)
.-+|+++|.|++|||||+..++..........+++.+.....+++++ .++++.|.||.-+ .........+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 56899999999999999999988776666666677788888999998 5899999999432 23344556788
Q ss_pred ccEEEEEEECCChhhHH-HHHHHHHHHHHhcCC-----------------------------------------------
Q 027985 88 AMGILLVYDVTDESSFN-NIRNWMRNIDQHAAD----------------------------------------------- 119 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~----------------------------------------------- 119 (216)
+|++++|.|++..+.-. .+...++.+......
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 99999999997643222 222222322211111
Q ss_pred ------------------CCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 120 ------------------NVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 120 ------------------~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
-++++.|-||+|. ++.+++..+++..+ -+-+|+....|++.+++.|.+.+.
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~------vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ------VSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccce------ecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence 1345667777773 55677777777666 355677788899999999888774
No 285
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.46 E-value=6.3e-13 Score=114.63 Aligned_cols=120 Identities=20% Similarity=0.186 Sum_probs=79.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCC--C--------------ccccceeeEEEEEEE--EECCeEEEEEEEeCC
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT--T--------------SFITTIGIDFKIRTI--ELDGKRIKLQIWDTA 72 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~ 72 (216)
..+..-+|+|+|..++|||||+.+|+...-. . +.....++......+ .+++..+.+.|+|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 3456678999999999999999999743211 0 011112222222222 234445789999999
Q ss_pred CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
|+..+.......++.+|++|+|+|+...-..... ..+...... +.|.++++||+|...
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~~---~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALRE---RVKPVLFINKVDRLI 153 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHHc---CCCeEEEEECchhhc
Confidence 9998887778889999999999999765332222 222222222 467899999999753
No 286
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.45 E-value=2.6e-12 Score=93.90 Aligned_cols=100 Identities=18% Similarity=0.129 Sum_probs=63.0
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE--EEEEeCCCCCCCCCCCCH
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK--ILVGNKADMDESKRAVPT 141 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~--ivv~nK~D~~~~~~~~~~ 141 (216)
..+.++++.|......... .-++.+|.|+|+.+...... .+.. .+.. ++++||+|+.+. .....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~--------qi~~ad~~~~~k~d~~~~-~~~~~ 157 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGP--------GITRSDLLVINKIDLAPM-VGADL 157 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHh--------HhhhccEEEEEhhhcccc-ccccH
Confidence 4667788888432222221 12677999999986555321 1111 2223 889999999641 11223
Q ss_pred HHHHHHHHH--hCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985 142 AKGQELADE--YGIKFFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 142 ~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
+......+. .+.+++++|+++|+|++++|++|.+.+
T Consensus 158 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 158 GVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 333444443 347999999999999999999998765
No 287
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.45 E-value=2.4e-12 Score=101.07 Aligned_cols=83 Identities=19% Similarity=0.176 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE---------------EEEEEEeCCCccccc--
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR-- 78 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~-- 78 (216)
++|+++|.|++|||||+|+|++........|+.|.+.....+.+.+.. ..+.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999988655666777777776666665532 258999999943211
Q ss_pred --c---ccccccccccEEEEEEECC
Q 027985 79 --T---ITTAYYRGAMGILLVYDVT 98 (216)
Q Consensus 79 --~---~~~~~~~~~d~~i~v~d~~ 98 (216)
. .....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 1223467899999999984
No 288
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.43 E-value=2.7e-12 Score=95.00 Aligned_cols=162 Identities=20% Similarity=0.225 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcc--ccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-------c----c
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------T----T 82 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~----~ 82 (216)
++|+|+|.+|+||||++|.+++....... ....+..........++ ..+.++||||....... . .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999988764432 22333444455556777 57899999994321111 1 1
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCC---C---CHHHHHHHHHHhCCc
Q 027985 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDESKRA---V---PTAKGQELADEYGIK 154 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~~~---~---~~~~~~~~~~~~~~~ 154 (216)
......+++++|+.... -+..+ ...+..+...++. -..++||.|..|-...... + ....++.+.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCc-chHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 12356899999999873 22222 1222233332221 1357888888885432220 0 012355566667778
Q ss_pred EEEEecC------CCCCHHHHHHHHHHHHHHHH
Q 027985 155 FFETSAK------TNFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 155 ~~~~Sa~------~~~~i~~l~~~l~~~~~~~~ 181 (216)
++.++.+ ....+.+|++.+-+.+.++.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8888766 23457788887777766553
No 289
>PRK13768 GTPase; Provisional
Probab=99.41 E-value=9.2e-13 Score=99.88 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=69.5
Q ss_pred EEEEEeCCCcccc---ccccccccc---c--ccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985 65 KLQIWDTAGQERF---RTITTAYYR---G--AMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES 135 (216)
Q Consensus 65 ~~~i~D~~G~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 135 (216)
.+.+||+||+.+. ...+..+++ . .+++++|+|+.......+.. .++..+......+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 6899999997653 233322222 2 78999999996544333322 2222222211236899999999998542
Q ss_pred CCC-CCHHHHH------------------------HHHHHhC--CcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 136 KRA-VPTAKGQ------------------------ELADEYG--IKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 136 ~~~-~~~~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
... ....... ...+..+ ..++++|+++++|+++++++|.+.+.
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 211 0000000 1122334 58899999999999999999988763
No 290
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.41 E-value=1.9e-12 Score=95.56 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=87.9
Q ss_pred ccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-C-----------ccccceeeEEEEEEEEECC-------------
Q 027985 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-T-----------SFITTIGIDFKIRTIELDG------------- 61 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~------------- 61 (216)
|...+......|.|+|..|+|||||+++++..... . ..+...-.......+...+
T Consensus 14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~ 93 (207)
T TIGR00073 14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAH 93 (207)
T ss_pred HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHH
Confidence 34445667899999999999999999998643110 0 0000000000000011110
Q ss_pred -------eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 62 -------KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 62 -------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
....+.|+|+.|.-.. . ..+....+..+.|+|+.+...... . ..... ..|.++++||+|+.+
T Consensus 94 ~l~~~~~~~~d~IiIEt~G~l~~-~--~~~~~~~~~~i~Vvd~~~~d~~~~--~---~~~~~---~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 94 ALEDLPLDDIDLLFIENVGNLVC-P--ADFDLGEHMRVVLLSVTEGDDKPL--K---YPGMF---KEADLIVINKADLAE 162 (207)
T ss_pred HHHHhccCCCCEEEEecCCCcCC-C--cccccccCeEEEEEecCcccchhh--h---hHhHH---hhCCEEEEEHHHccc
Confidence 0136778888882111 1 111123455567888865432111 1 11111 356799999999964
Q ss_pred CCCCCCHHHHHHHHHHhC--CcEEEEecCCCCCHHHHHHHHHHH
Q 027985 135 SKRAVPTAKGQELADEYG--IKFFETSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (216)
.. ...........+..+ .+++++||++++|++++|+++.+.
T Consensus 163 ~~-~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 163 AV-GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred cc-hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 21 122233333344443 789999999999999999998764
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.41 E-value=1.9e-12 Score=113.06 Aligned_cols=120 Identities=19% Similarity=0.182 Sum_probs=82.4
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCccccceeeEEEEEEEEEC-------------
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSF----------------TTSFITTIGIDFKIRTIELD------------- 60 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~------------- 60 (216)
...+...+|+|+|..++|||||+.+|+...- ..+.....+++.....+.+.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 4567788999999999999999999974321 11112222333222233331
Q ss_pred -CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985 61 -GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (216)
Q Consensus 61 -~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 133 (216)
+..+.+.|+|||||..|.......++.+|++|+|+|+.+.-......-| ..+. ..++|+++++||+|..
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH---HCCCCEEEEEECCccc
Confidence 1246889999999999988888889999999999999875433332222 2232 2378999999999985
No 292
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.41 E-value=1.8e-12 Score=97.85 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=76.0
Q ss_pred cccccccccccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC
Q 027985 75 ERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 153 (216)
+++..+...+++++|++++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.+ ...+..+..+.+ ...+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~-~~~~~~~~~~~~-~~~g~ 98 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLD-DEDMEKEQLDIY-RNIGY 98 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCC-CHHHHHHHHHHH-HHCCC
Confidence 566777778999999999999999887 89999999876654 3789999999999954 223333444444 35788
Q ss_pred cEEEEecCCCCCHHHHHHHHH
Q 027985 154 KFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 154 ~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
.++++||++|+|++++|+.+.
T Consensus 99 ~v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 99 QVLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred eEEEEecCCchhHHHHHhhhc
Confidence 999999999999999998875
No 293
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.39 E-value=2.2e-11 Score=98.59 Aligned_cols=162 Identities=20% Similarity=0.290 Sum_probs=117.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....+++.|+|+.++|||.|++.|+++.+......+....+....+...+....+.+-|.+-. ....+...- ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 4557899999999999999999999998887655555555555566655566556777777654 222212112 77999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQV 169 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l 169 (216)
++++||.+++.+++.+...++..... ...|+++|++|+|+.+...+..... .+++.++++ ..+.+|.++.-. .++
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~l 574 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NEL 574 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chH
Confidence 99999999999999887765544333 4799999999999965444444444 889999997 456777774333 788
Q ss_pred HHHHHHHHH
Q 027985 170 FFSIAREIK 178 (216)
Q Consensus 170 ~~~l~~~~~ 178 (216)
|..|...+.
T Consensus 575 f~kL~~~A~ 583 (625)
T KOG1707|consen 575 FIKLATMAQ 583 (625)
T ss_pred HHHHHHhhh
Confidence 988877765
No 294
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.38 E-value=8.2e-13 Score=103.74 Aligned_cols=165 Identities=12% Similarity=0.176 Sum_probs=81.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-cccc-ce-eeEEEEEEEEECCeEEEEEEEeCCCcccccc-----ccccc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFIT-TI-GIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----ITTAY 84 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~ 84 (216)
..+++|+|+|.+|+|||||||+|.+-.... ..-+ +. .++.....+..... -++.+||.||...... +....
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 357999999999999999999997633211 1111 11 01111122222221 2699999999543221 12224
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC--CCC----CCCCCHH----HHHHHH-HH---
Q 027985 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM--DES----KRAVPTA----KGQELA-DE--- 150 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~--~~~----~~~~~~~----~~~~~~-~~--- 150 (216)
+...|.+|++.+.. -+..++ .....+... ++|+.+|-+|+|. .+. ......+ .++..+ +.
T Consensus 112 ~~~yD~fiii~s~r--f~~ndv-~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 112 FYRYDFFIIISSER--FTENDV-QLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GGG-SEEEEEESSS----HHHH-HHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred ccccCEEEEEeCCC--CchhhH-HHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 66788777766542 221221 222334443 7899999999995 111 1112221 222222 11
Q ss_pred hCC---cEEEEecCCC--CCHHHHHHHHHHHHHHHHhhh
Q 027985 151 YGI---KFFETSAKTN--FNVEQVFFSIAREIKQRLVES 184 (216)
Q Consensus 151 ~~~---~~~~~Sa~~~--~~i~~l~~~l~~~~~~~~~~~ 184 (216)
.++ .+|.+|+.+- .++..|.+.|.+.+..++++.
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~ 224 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHA 224 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHH
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHH
Confidence 232 6899998764 568889999988888776654
No 295
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.38 E-value=1.8e-11 Score=95.50 Aligned_cols=104 Identities=18% Similarity=0.137 Sum_probs=64.7
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHH
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTA 142 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~ 142 (216)
+.+.|+||+|...... .....+|.+++|.+......+..++.- +. ...-++|+||+|+...... ....
T Consensus 149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~g---i~-----E~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKKG---IM-----ELADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHhh---hh-----hhhheEEeehhcccchhHHHHHHH
Confidence 6789999999653222 246679999999764434444333221 11 1223899999998542210 1111
Q ss_pred HHHHHHHH-------hCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 143 KGQELADE-------YGIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 143 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
+++..... +..+++.+||.++.|++++++.|.+++.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22222221 1147999999999999999999998765
No 296
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.2e-11 Score=100.14 Aligned_cols=153 Identities=19% Similarity=0.161 Sum_probs=103.0
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCccccceeeEEEEEEEEE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDS-------------------------------FTTSFITTIGIDFKIRTIEL 59 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 59 (216)
.+-..+.++|+|...+|||||+.+|+... ..++...+.+.+.... .+
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~--~f 250 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT--WF 250 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE--EE
Confidence 44467999999999999999999985221 1122334444444444 44
Q ss_pred CCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHH------HHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN------IRNWMRNIDQHAADNVNKILVGNKADMD 133 (216)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 133 (216)
+.....++|+|+|||..|.........++|++|+|+|++-.+.... .++ ...+.+..+ -..++|++||+|+.
T Consensus 251 es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~Lg-i~qlivaiNKmD~V 328 (603)
T KOG0458|consen 251 ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSLG-ISQLIVAINKMDLV 328 (603)
T ss_pred ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHcC-cceEEEEeeccccc
Confidence 4455789999999998888888888899999999999976322111 222 233333333 34578888999997
Q ss_pred CCCCCC---CHHHHHHHH-HHhC-----CcEEEEecCCCCCHH
Q 027985 134 ESKRAV---PTAKGQELA-DEYG-----IKFFETSAKTNFNVE 167 (216)
Q Consensus 134 ~~~~~~---~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~i~ 167 (216)
+..... ....+..|. +..| +.|++||+..|+|+-
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence 644332 233455555 4444 479999999999864
No 297
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.37 E-value=1.4e-12 Score=97.69 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=59.8
Q ss_pred EEEEEeCCCcccccccccccc--------ccccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985 65 KLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTDESS-FNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135 (216)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 135 (216)
.+.|+|||||.++-..+.... ...-++++++|...... ...+..++..+......+.|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999877554333222 33456888888864332 233344444444444347999999999999651
Q ss_pred CCC------C------------CHHHHHHHHHHh---C-C-cEEEEecCCCCCHHHHHHHHHHHH
Q 027985 136 KRA------V------------PTAKGQELADEY---G-I-KFFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 136 ~~~------~------------~~~~~~~~~~~~---~-~-~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
... . .....+.++.-. + . .++++|+.+++|+.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 100 0 011111222222 2 3 799999999999999999876654
No 298
>PTZ00416 elongation factor 2; Provisional
Probab=99.37 E-value=4.7e-12 Score=110.44 Aligned_cols=118 Identities=20% Similarity=0.195 Sum_probs=79.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCC----------------CccccceeeEEEEEEEEEC--------CeEEEEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT----------------TSFITTIGIDFKIRTIELD--------GKRIKLQ 67 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 67 (216)
.+...+|+|+|..++|||||+++|+...-. .+.....++......+.+. +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 455669999999999999999999752210 0111222222222233332 1246799
Q ss_pred EEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985 68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (216)
Q Consensus 68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 133 (216)
|+||||+..+.......++.+|++|+|+|+.+.-.... ...+..+... +.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~---~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE---RIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc---CCCEEEEEEChhhh
Confidence 99999999887777888999999999999987533222 2223333332 68999999999985
No 299
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.37 E-value=9.9e-12 Score=84.01 Aligned_cols=114 Identities=31% Similarity=0.353 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccc-cceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
+||+++|..|+|||+|+.++....+...+. ++.+ +........+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997777754332 2222 222334456778889999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
++..+.++++.+ |...+........|.++++||.|+.+.. .+..+... .++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~-~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER-QVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC-cCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999888766 7666665555568889999999984422 33332222 35567888888874
No 300
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.37 E-value=4.5e-11 Score=94.21 Aligned_cols=153 Identities=17% Similarity=0.223 Sum_probs=92.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC----CCC------------Cccccc---eeeEEEE---EEEEE---CCeEEEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD----SFT------------TSFITT---IGIDFKI---RTIEL---DGKRIKLQ 67 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~~---~~~~~~~~ 67 (216)
...+.|.|+|+.++||||||++|++. ... +++.++ +|++... .-+.+ ++....+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45689999999999999999999988 222 112233 3333322 11222 34446899
Q ss_pred EEeCCCccccc--------c-----------c----------cccccc-cccEEEEEE-ECC--C--hhhHHH-HHHHHH
Q 027985 68 IWDTAGQERFR--------T-----------I----------TTAYYR-GAMGILLVY-DVT--D--ESSFNN-IRNWMR 111 (216)
Q Consensus 68 i~D~~G~~~~~--------~-----------~----------~~~~~~-~~d~~i~v~-d~~--~--~~s~~~-~~~~~~ 111 (216)
++|++|...-. . . ....+. .+++.|+|. |.+ + ++.+.. =.+++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999932110 1 0 112344 789999988 663 1 122222 234556
Q ss_pred HHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC--CCCHHHHHH
Q 027985 112 NIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT--NFNVEQVFF 171 (216)
Q Consensus 112 ~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~l~~ 171 (216)
.+... ++|+++|+||.|... ....+..+.+..+++++++.+|+.+ .+.|..+++
T Consensus 175 eLk~~---~kPfiivlN~~dp~~---~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~ 230 (492)
T TIGR02836 175 ELKEL---NKPFIILLNSTHPYH---PETEALRQELEEKYDVPVLAMDVESMRESDILSVLE 230 (492)
T ss_pred HHHhc---CCCEEEEEECcCCCC---chhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHH
Confidence 66655 799999999999421 1244555667777888888888754 334444443
No 301
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.2e-12 Score=98.95 Aligned_cols=169 Identities=17% Similarity=0.173 Sum_probs=114.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC---CCCCccccceeeEEEEEEEEE------------------C------CeEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD---SFTTSFITTIGIDFKIRTIEL------------------D------GKRIK 65 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~~------------------~------~~~~~ 65 (216)
...++|.++|.-..|||||.++|.+- .+.++.....++..-+....+ . .-.-.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 56799999999999999999999753 222222222222211111100 0 01136
Q ss_pred EEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHHH
Q 027985 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAKG 144 (216)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~ 144 (216)
+.|+|.|||+-..........-.|++++|++++.+..-...++.+..+.... -..+++|-||+|+...++ ....+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 8999999999877767667777899999999988644444444444454443 246788899999965332 2345667
Q ss_pred HHHHHHh---CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027985 145 QELADEY---GIKFFETSAKTNFNVEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 145 ~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 183 (216)
+.|.+-. +.+++++||..+.|||-|++.|.+.+..-.++
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 7776643 36899999999999999999998887644333
No 302
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.36 E-value=1.8e-11 Score=91.32 Aligned_cols=142 Identities=14% Similarity=0.162 Sum_probs=82.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
...+..|+|+|.+|+|||||++.+.+...........+. + ......+ .++.++|+||.. .......+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i~~~~~--~~i~~vDtPg~~---~~~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TVVTGKK--RRLTFIECPNDI---NAMIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EEEecCC--ceEEEEeCCchH---HHHHHHHHhcCEE
Confidence 345678999999999999999999865221111111110 1 1112223 478999999854 1122346789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCCC--CHHHHHH-HHHHh--CCcEEEEecCCCCC
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNK-ILVGNKADMDESKRAV--PTAKGQE-LADEY--GIKFFETSAKTNFN 165 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D~~~~~~~~--~~~~~~~-~~~~~--~~~~~~~Sa~~~~~ 165 (216)
++|+|+........ ...+..+... +.|. ++|+||.|+.+..... ....++. +.... +.+++.+||+++-.
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 99999975433222 2233333332 5675 4599999986422111 1122222 33222 36899999998743
No 303
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=8.4e-12 Score=103.40 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=107.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC------------Ce----EEEEEEEeCCCccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD------------GK----RIKLQIWDTAGQERFR 78 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~i~D~~G~~~~~ 78 (216)
-.-++|+|.-.+|||-|+..+.+..+.....-+.+..+....+... ++ .-.+.++|||||+.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 3456899999999999999998766654433333222221111111 00 0137889999999999
Q ss_pred cccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-----C-------CH--
Q 027985 79 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-----V-------PT-- 141 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-----~-------~~-- 141 (216)
.+.......||++|+|+|+-. +++++.+ +.++. .+.|+||.+||+|....-.. + ..
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHH----HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 999999999999999999864 3444432 22333 37899999999996331000 0 00
Q ss_pred ---------HHHHHHHHH----------h--C--CcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985 142 ---------AKGQELADE----------Y--G--IKFFETSAKTNFNVEQVFFSIAREIKQRLVESD 185 (216)
Q Consensus 142 ---------~~~~~~~~~----------~--~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~ 185 (216)
..+..|+.+ . + +.++++||..|+||.+|+.+|++.......+..
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl 694 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKL 694 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 011111110 0 1 468999999999999999999998877766553
No 304
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.2e-11 Score=94.49 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=65.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECC----------------eEEEEEEEeCCCc----
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG----------------KRIKLQIWDTAGQ---- 74 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~---- 74 (216)
.+++.|+|.|++|||||.|+++.........|+.|++.+.......+ ....+.++|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999998887667788888888777665532 1246899999992
Q ss_pred ---cccccccccccccccEEEEEEECCC
Q 027985 75 ---ERFRTITTAYYRGAMGILLVYDVTD 99 (216)
Q Consensus 75 ---~~~~~~~~~~~~~~d~~i~v~d~~~ 99 (216)
+.........+|++|+++.|+++.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 2233334456899999999999864
No 305
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.5e-11 Score=92.75 Aligned_cols=163 Identities=18% Similarity=0.206 Sum_probs=101.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc-------CCCCCccccceeeEEEEEEEEE-------CCeEEEEEEEeCCCccccc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSD-------DSFTTSFITTIGIDFKIRTIEL-------DGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~-------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~ 78 (216)
.-.+++.++|.-.||||||.++|.. ...+++.+...+.+.....+.. .++.+++.++|.|||...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 3459999999999999999999853 2223334444455544444433 3445789999999997665
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCCCCH-HHHHHHHHHh-----
Q 027985 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES-KRAVPT-AKGQELADEY----- 151 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-~~~~~~-~~~~~~~~~~----- 151 (216)
........-.|..++|+|+.....-+... ...+....+ ...|+|+||.|...+ ++.... ...+...+.+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAE--cLiig~~~c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAE--CLIIGELLC--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccch--hhhhhhhhc--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 55555556679999999997532222111 112333333 346888899887443 222111 1122222221
Q ss_pred --CCcEEEEecCCC----CCHHHHHHHHHHHHHH
Q 027985 152 --GIKFFETSAKTN----FNVEQVFFSIAREIKQ 179 (216)
Q Consensus 152 --~~~~~~~Sa~~~----~~i~~l~~~l~~~~~~ 179 (216)
+.+++++|+..| ++|.+|.+.|.+.+.+
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 268999999999 6777777777666653
No 306
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.35 E-value=6.3e-12 Score=95.66 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=61.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE---------------EEEEEEeCCCccccc----
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR---- 78 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~---- 78 (216)
|+++|.|++|||||+|+|++........|+.|.+.....+.+.+.. ..+.++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999988866667888877777777766532 259999999943211
Q ss_pred c---ccccccccccEEEEEEECC
Q 027985 79 T---ITTAYYRGAMGILLVYDVT 98 (216)
Q Consensus 79 ~---~~~~~~~~~d~~i~v~d~~ 98 (216)
. .....++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 1222467899999999874
No 307
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.35 E-value=9.2e-12 Score=88.16 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=83.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEE---------------EEEEEC-C-----------------
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKI---------------RTIELD-G----------------- 61 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~-~----------------- 61 (216)
.+.|.|.|++|||||+|+..++..-.......-.+.+.+. ..+... +
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 5899999999999999998876432222111111111111 001111 0
Q ss_pred --eEEEEEEEeCCCcccccccccccccccc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCCCC
Q 027985 62 --KRIKLQIWDTAGQERFRTITTAYYRGAM-GILLVYDVTDESSFNNIRNWMRNIDQHAADN--VNKILVGNKADMDESK 136 (216)
Q Consensus 62 --~~~~~~i~D~~G~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~D~~~~~ 136 (216)
..+.+.|++..|+ .....-+.-.| .-|+|+|+...+... .+..+. .-=++|+||.|+.+ .
T Consensus 93 ~~~~~Dll~iEs~GN----L~~~~sp~L~d~~~v~VidvteGe~~P----------~K~gP~i~~aDllVInK~DLa~-~ 157 (202)
T COG0378 93 DFPDLDLLFIESVGN----LVCPFSPDLGDHLRVVVIDVTEGEDIP----------RKGGPGIFKADLLVINKTDLAP-Y 157 (202)
T ss_pred cCCcCCEEEEecCcc----eecccCcchhhceEEEEEECCCCCCCc----------ccCCCceeEeeEEEEehHHhHH-H
Confidence 0034555555551 11111122233 789999997654311 110000 11288999999965 2
Q ss_pred CCCCHHHHHHHHHHhC--CcEEEEecCCCCCHHHHHHHHHHHH
Q 027985 137 RAVPTAKGQELADEYG--IKFFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
-..+.+....-+++.+ .+++++|.++|+|++++++|+....
T Consensus 158 v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 158 VGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred hCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 2333344444444443 7999999999999999999987654
No 308
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.34 E-value=3.7e-12 Score=92.04 Aligned_cols=146 Identities=21% Similarity=0.306 Sum_probs=98.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh-cCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-----ccccccccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFS-DDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYYRGA 88 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~ 88 (216)
.-||+++|.+|+|||++=..+. +........++.++++......+-|. +.+.+||.+|++.+ .......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 3589999999999999855443 23223344566667777777777654 68999999998843 23456789999
Q ss_pred cEEEEEEECCChhhHHHHHHHHH---HHHHhcCCCCcEEEEEeCCCCCCCCCC-C----CHHHHHHHHHHhCCcEEEEec
Q 027985 89 MGILLVYDVTDESSFNNIRNWMR---NIDQHAADNVNKILVGNKADMDESKRA-V----PTAKGQELADEYGIKFFETSA 160 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~---~l~~~~~~~~p~ivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~~~~~~Sa 160 (216)
+++++|||+...+-..++..+.. .+.++ .+...+++.+.|+|+...... . ..+....+....++.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999988777666665544 33443 335778888999999642221 1 122233333344567788875
Q ss_pred CC
Q 027985 161 KT 162 (216)
Q Consensus 161 ~~ 162 (216)
.+
T Consensus 162 wD 163 (295)
T KOG3886|consen 162 WD 163 (295)
T ss_pred hh
Confidence 54
No 309
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.33 E-value=1.4e-11 Score=94.48 Aligned_cols=141 Identities=21% Similarity=0.248 Sum_probs=75.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc----------ccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---ccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF----------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---RTI 80 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---~~~ 80 (216)
..++|+|+|.+|+|||||||.|++....... ..+.........+.-++..+++.|+||||.... ...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999876553321 123334444445566778899999999992210 000
Q ss_pred c----------------------cccc--ccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985 81 T----------------------TAYY--RGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135 (216)
Q Consensus 81 ~----------------------~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 135 (216)
| ...+ ...|+++|.++.+... .-.++ ..+... ...+++|-|+.|.|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di----~~mk~L-s~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI----EFMKRL-SKRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH----HHHHHH-TTTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH----HHHHHh-cccccEEeEEecccccCH
Confidence 0 0001 2478899999976522 11122 222222 235889999999997431
Q ss_pred -CCCCCHHHHHHHHHHhCCcEEEEe
Q 027985 136 -KRAVPTAKGQELADEYGIKFFETS 159 (216)
Q Consensus 136 -~~~~~~~~~~~~~~~~~~~~~~~S 159 (216)
+....+..+..-.+..++.+|...
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHHcCceeeccc
Confidence 111223334444455666666544
No 310
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.31 E-value=2.2e-11 Score=86.87 Aligned_cols=63 Identities=25% Similarity=0.335 Sum_probs=43.4
Q ss_pred EEEEEeCCCccc----cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027985 65 KLQIWDTAGQER----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA 130 (216)
Q Consensus 65 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~ 130 (216)
.+.|+|+||... ....+..++..+|++|||.++.....-.....+.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 479999999543 2355667789999999999998865555554444444333 34589999984
No 311
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.1e-11 Score=93.91 Aligned_cols=152 Identities=22% Similarity=0.176 Sum_probs=111.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC---CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
-|+..|.-..|||||++.+++..- .+....+.+.+.....+..++ ..+.|+|.||++.+-......+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 477889999999999999987543 556677777777777777666 489999999999988778888889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh---CCcEEEEecCCCCCHH
Q 027985 94 VYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY---GIKFFETSAKTNFNVE 167 (216)
Q Consensus 94 v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~ 167 (216)
|++.++ +++.+.+ . +..... ....++|+||+|..+.. ...+.++.+.... +.++|.+|+.+|+||+
T Consensus 80 vV~~deGl~~qtgEhL----~-iLdllg-i~~giivltk~D~~d~~--r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~ 151 (447)
T COG3276 80 VVAADEGLMAQTGEHL----L-ILDLLG-IKNGIIVLTKADRVDEA--RIEQKIKQILADLSLANAKIFKTSAKTGRGIE 151 (447)
T ss_pred EEeCccCcchhhHHHH----H-HHHhcC-CCceEEEEeccccccHH--HHHHHHHHHHhhcccccccccccccccCCCHH
Confidence 999964 3444433 2 222222 23459999999987632 1222223333222 3578999999999999
Q ss_pred HHHHHHHHHHH
Q 027985 168 QVFFSIAREIK 178 (216)
Q Consensus 168 ~l~~~l~~~~~ 178 (216)
+|.+.|.+...
T Consensus 152 ~Lk~~l~~L~~ 162 (447)
T COG3276 152 ELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHhhh
Confidence 99999998885
No 312
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.28 E-value=2.6e-10 Score=88.67 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=90.2
Q ss_pred eEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChh-------hHHHHHHHHHHHHHh----cC
Q 027985 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-------SFNNIRNWMRNIDQH----AA 118 (216)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~l~~~----~~ 118 (216)
.......+.+.+ ..+.++|++|+.....-|.+.+.+++++|+|+++++.+ ....+.+-+..+... .-
T Consensus 183 ~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 183 TGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 445555666666 68999999999998999999999999999999987632 222333322223222 22
Q ss_pred CCCcEEEEEeCCCCCC--------------CCCCCCHHHHHHHHHHh----------CCcEEEEecCCCCCHHHHHHHHH
Q 027985 119 DNVNKILVGNKADMDE--------------SKRAVPTAKGQELADEY----------GIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 119 ~~~p~ivv~nK~D~~~--------------~~~~~~~~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
.+.++++++||.|+-+ ....-..+++..+.... .+-++.+.|.+..+|+.+|....
T Consensus 261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 4689999999999822 12222333444443221 13467778899999999999999
Q ss_pred HHHHHHHhhh
Q 027985 175 REIKQRLVES 184 (216)
Q Consensus 175 ~~~~~~~~~~ 184 (216)
+.+.++..+.
T Consensus 341 d~Ii~~nlk~ 350 (354)
T KOG0082|consen 341 DTIIQNNLKD 350 (354)
T ss_pred HHHHHHHHHH
Confidence 9888776543
No 313
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.27 E-value=6.2e-12 Score=95.22 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=106.2
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc---------cccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRT 79 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~ 79 (216)
++......-|.|+|..++||||||++|++....+...-+.|.+..........+. .+.+.||-|.- .|..
T Consensus 172 gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~A 250 (410)
T KOG0410|consen 172 GREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQA 250 (410)
T ss_pred ccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHH
Confidence 3455566788999999999999999999777766666667777776666666553 67788999932 1222
Q ss_pred ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc----EEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcE
Q 027985 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN----KILVGNKADMDESKRAVPTAKGQELADEYGIKF 155 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 155 (216)
.......+|+++.|.|++.|+.-+.-..-+..+....-...| ++=|=||.|..+.... .++++ .
T Consensus 251 -TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e---------~E~n~--~ 318 (410)
T KOG0410|consen 251 -TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE---------EEKNL--D 318 (410)
T ss_pred -HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc---------cccCC--c
Confidence 223467899999999999987655544444444443221223 3445678876332111 12233 6
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 027985 156 FETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
+.+|+.+|+|++++...+-..+.
T Consensus 319 v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 319 VGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccccccCccHHHHHHHHHHHhh
Confidence 88999999999999988777665
No 314
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=9.3e-11 Score=99.41 Aligned_cols=130 Identities=19% Similarity=0.182 Sum_probs=93.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC------------------CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
.+..-+|.|+|+-.+|||||..+++...- ..+...+.|+......+.+.+ .+.++|+||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 66778999999999999999999863211 011234445666666666664 36899999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHH
Q 027985 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE 146 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 146 (216)
|-.|.......++-+|++|+|+|+.+.-..+.-.-|.+ ... .++|.++++||+|..........++++.
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-a~~---~~vp~i~fiNKmDR~~a~~~~~~~~l~~ 154 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-ADK---YGVPRILFVNKMDRLGADFYLVVEQLKE 154 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-Hhh---cCCCeEEEEECccccccChhhhHHHHHH
Confidence 99999999999999999999999987543333333333 222 3789999999999866554444444443
No 315
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.22 E-value=2.4e-10 Score=95.04 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=73.2
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------cc--
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TI-- 80 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~-- 80 (216)
+-+..++|+|+|.+|+||||++|.|++... ........+..........++ ..+.|+||||..... .+
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk 191 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILS 191 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHH
Confidence 345678999999999999999999998764 333222223233223334455 579999999955321 11
Q ss_pred -cccccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 027985 81 -TTAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDE 134 (216)
Q Consensus 81 -~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~ 134 (216)
...++. ..|++|||..+........-..++..+...++. -..+|||.|+.|..+
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 111222 479999998875332211112334444443332 145788999999754
No 316
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.20 E-value=1.6e-10 Score=89.92 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=62.5
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC-HH
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP-TA 142 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~ 142 (216)
+.+.|+||+|..... ...+..+|.++++... ++...+......+. ..|.++|+||+|+........ ..
T Consensus 127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHHH
Confidence 678999999954221 2245667877777543 33333333322221 467799999999864221100 00
Q ss_pred ----HHHHHHHH---hCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 143 ----KGQELADE---YGIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 143 ----~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
....+... +..+++++||++++|+++++++|.+.+.
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 01111111 1236899999999999999999988754
No 317
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.18 E-value=3e-10 Score=87.79 Aligned_cols=118 Identities=22% Similarity=0.304 Sum_probs=75.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc----------cccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--- 77 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--- 77 (216)
+..-.+.|+++|+.|+|||||+|+|++...... ..++..+..+...+.-++..+++.++||||.-.+
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 345679999999999999999999987633222 2345556666666777888899999999992211
Q ss_pred ccccc----------------------c-cc--ccccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCC
Q 027985 78 RTITT----------------------A-YY--RGAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKAD 131 (216)
Q Consensus 78 ~~~~~----------------------~-~~--~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D 131 (216)
...|. . .+ ...|+++|.+..+.. .+..+. ..+..+. ..+.+|-|+.|+|
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD 173 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKAD 173 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccc
Confidence 11111 0 11 136778888876532 222211 1222233 2577889999999
Q ss_pred CC
Q 027985 132 MD 133 (216)
Q Consensus 132 ~~ 133 (216)
+.
T Consensus 174 ~l 175 (373)
T COG5019 174 TL 175 (373)
T ss_pred cC
Confidence 74
No 318
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.14 E-value=5.4e-10 Score=83.55 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=41.4
Q ss_pred EEEEEEeCCCcccc-------------ccccccccc-cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027985 64 IKLQIWDTAGQERF-------------RTITTAYYR-GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129 (216)
Q Consensus 64 ~~~~i~D~~G~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK 129 (216)
..+.|+|+||.... ..+...+++ ..+++++|+|+...-.-.........+. ..+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 46899999996421 122334556 4568999998864322222222222232 336899999999
Q ss_pred CCCCC
Q 027985 130 ADMDE 134 (216)
Q Consensus 130 ~D~~~ 134 (216)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99854
No 319
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.14 E-value=2.6e-10 Score=86.98 Aligned_cols=55 Identities=18% Similarity=0.129 Sum_probs=38.4
Q ss_pred CcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh--CCcEEEEecCCCCCHHHHHHHHHHH
Q 027985 121 VNKILVGNKADMDESKRAVPTAKGQELADEY--GIKFFETSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 121 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (216)
..-++|+||+|+.+.. ....+......+.. +..++.+|+++|+|++++++||...
T Consensus 231 ~ADIVVLNKiDLl~~~-~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYL-NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCccc-HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4559999999996421 11222333333333 3789999999999999999999764
No 320
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1e-09 Score=85.45 Aligned_cols=147 Identities=20% Similarity=0.269 Sum_probs=88.5
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC---------ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--- 77 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--- 77 (216)
.++...|.++++|+.|.|||||||.|+...+.. ....+..+......+.-+|..++++++||||....
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc
Confidence 355667999999999999999999998764422 12224455556666666788899999999992210
Q ss_pred cccc----------------------ccccc--cccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985 78 RTIT----------------------TAYYR--GAMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADM 132 (216)
Q Consensus 78 ~~~~----------------------~~~~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~ 132 (216)
...| ...+. ..++++|.+..+.. .+..+. ..+..+. ..+.+|-|+.|+|.
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADT 170 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeecccc
Confidence 1111 11122 47888888876542 111111 1122232 35788999999997
Q ss_pred CCC-CCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985 133 DES-KRAVPTAKGQELADEYGIKFFETSAK 161 (216)
Q Consensus 133 ~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (216)
... ........+.......++.+|.....
T Consensus 171 lT~~El~~~K~~I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 171 LTKDELNQFKKRIRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcceecCCCC
Confidence 431 11222334444455566776666543
No 321
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=8.2e-10 Score=80.57 Aligned_cols=147 Identities=20% Similarity=0.261 Sum_probs=84.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC---------ccccceeeEEEEEEEEECCeEEEEEEEeCCCccc---ccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---FRT 79 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---~~~ 79 (216)
....|+|+|+|++|.|||||+|+|+...... ....+..+......+.-++..+++.++||||... ...
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 3456999999999999999999997533311 1223334444445566677778999999999211 111
Q ss_pred cc-----------------------cccccc--ccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985 80 IT-----------------------TAYYRG--AMGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMD 133 (216)
Q Consensus 80 ~~-----------------------~~~~~~--~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~ 133 (216)
.| ...+.+ .++++|.+..+.. ++..+. +.+..+ ..-+.+|-|+-|.|..
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrL----t~vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRL----TEVVNVVPVIAKADTL 197 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHH----hhhheeeeeEeecccc
Confidence 11 112333 5666777766542 222111 112222 2246778899999964
Q ss_pred CC-CCCCCHHHHHHHHHHhCCcEEEEecCCC
Q 027985 134 ES-KRAVPTAKGQELADEYGIKFFETSAKTN 163 (216)
Q Consensus 134 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (216)
.- ++....+.++.-...+++.+++-.+.+-
T Consensus 198 TleEr~~FkqrI~~el~~~~i~vYPq~~fde 228 (336)
T KOG1547|consen 198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDE 228 (336)
T ss_pred cHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 31 2223344455555667777777655443
No 322
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=8.6e-10 Score=90.85 Aligned_cols=119 Identities=24% Similarity=0.285 Sum_probs=85.4
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------------ccceeeEEEEEEE---EECCeEEEEEEE
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF-----------------ITTIGIDFKIRTI---ELDGKRIKLQIW 69 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~~i~ 69 (216)
...+...+|.++|.-++|||+|+..|..+..+.-+ +.+.++.....++ ...++.+-++|.
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 35667889999999999999999999766553321 1111222222222 224566889999
Q ss_pred eCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (216)
Q Consensus 70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 132 (216)
|||||-.+.......++.+|++++|+|+.+.-.+..- +. +......+.|+++|+||+|.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~---ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RI---IKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HH---HHHHHhccCcEEEEEehhHH
Confidence 9999999999999999999999999999876444332 11 22223347899999999996
No 323
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1e-09 Score=84.86 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=84.7
Q ss_pred CCccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc---cccceeeEEEEEEEEECCeE----------------
Q 027985 3 TAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS---FITTIGIDFKIRTIELDGKR---------------- 63 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------------- 63 (216)
++|+-...+.+...-|+++|+-+.||||||+.|+.+.++.. .+|+ +++....+.-+...
T Consensus 46 ~sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPT--td~Fi~vM~G~~e~~ipGnal~vd~~~pF~ 123 (532)
T KOG1954|consen 46 HSPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPT--TDRFIAVMHGDEEGSIPGNALVVDAKKPFR 123 (532)
T ss_pred ccccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCC--cceeEEEEecCcccccCCceeeecCCCchh
Confidence 35666677888889999999999999999999999888642 2333 34444444332211
Q ss_pred -----------------------EEEEEEeCCCccc-----------cccccccccccccEEEEEEECCChhhHHHHHHH
Q 027985 64 -----------------------IKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109 (216)
Q Consensus 64 -----------------------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 109 (216)
-.+.|+||||.-. +.....-|...+|.++++||..--+--.+..+.
T Consensus 124 gL~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~v 203 (532)
T KOG1954|consen 124 GLNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRV 203 (532)
T ss_pred hhhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHH
Confidence 1479999999322 222223366789999999998543333333333
Q ss_pred HHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 110 MRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 110 ~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
+..+. ...-.+-||+||.|+.+
T Consensus 204 i~aLk---G~EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 204 IDALK---GHEDKIRVVLNKADQVD 225 (532)
T ss_pred HHHhh---CCcceeEEEeccccccC
Confidence 44443 34567889999999865
No 324
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.05 E-value=5.8e-10 Score=84.08 Aligned_cols=106 Identities=22% Similarity=0.172 Sum_probs=65.7
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHH
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK 143 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 143 (216)
+.+.|++|.|.-.. -.....-+|.+++|.-..-.+.++.++.-+.++. =++|+||.|....... ..+.
T Consensus 144 ~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~a-~r~l 211 (323)
T COG1703 144 YDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEKA-AREL 211 (323)
T ss_pred CCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHHH-HHHH
Confidence 56888899884322 2234556888888876655555555544433332 2889999996432111 1111
Q ss_pred HHHH------HHHhC--CcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985 144 GQEL------ADEYG--IKFFETSAKTNFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 144 ~~~~------~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (216)
...+ ....+ -+++.+||.+|+|+++|++.+.++.....
T Consensus 212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~ 257 (323)
T COG1703 212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT 257 (323)
T ss_pred HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence 1111 11222 37999999999999999999988876443
No 325
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.04 E-value=1.6e-09 Score=79.93 Aligned_cols=154 Identities=21% Similarity=0.161 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-------cccccccccccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRGA 88 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 88 (216)
-+|.++|.|++||||++..+.+.........+.+.......+.+.+ -++++.|.||.-+ .........+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3789999999999999999998877665555556666666666776 4799999999432 234455677899
Q ss_pred cEEEEEEECCChhhHHHHHH-----------------------------------------HHHHHHHhc----------
Q 027985 89 MGILLVYDVTDESSFNNIRN-----------------------------------------WMRNIDQHA---------- 117 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~-----------------------------------------~~~~l~~~~---------- 117 (216)
+++++|.|+..|-+...+.+ .+.+.+.+.
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 99999999865422221111 111100000
Q ss_pred -----------CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985 118 -----------ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 118 -----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (216)
..-+|.+.++||+|... .++...... ....+++||.++.|++++++.+.+.+.-
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsIS------iEELdii~~--iphavpISA~~~wn~d~lL~~mweyL~L 282 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSIS------IEELDIIYT--IPHAVPISAHTGWNFDKLLEKMWEYLKL 282 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceee------eeccceeee--ccceeecccccccchHHHHHHHhhcchh
Confidence 01366788888888532 111111111 1347999999999999999998887753
No 326
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.03 E-value=3.1e-10 Score=84.30 Aligned_cols=154 Identities=19% Similarity=0.157 Sum_probs=84.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC------CC-----CCccccce---------------eeEEEEEEEEECCe-----
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD------SF-----TTSFITTI---------------GIDFKIRTIELDGK----- 62 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~------~~-----~~~~~~~~---------------~~~~~~~~~~~~~~----- 62 (216)
..+.|.|.|+||+|||||+..|... .+ ++++..+- ....+...+-..+.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4578999999999999999998421 11 11111100 12233333322111
Q ss_pred -------------EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027985 63 -------------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNK 129 (216)
Q Consensus 63 -------------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK 129 (216)
.+.+.|++|.|.-.. -.....-+|.+++|......+.++.++.-+.++ .=++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeC
Confidence 157888898883221 223455689999998776555555444333333 22889999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHh-------CCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 130 ADMDESKRAVPTAKGQELADEY-------GIKFFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 130 ~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
.|...... ...+.+...... .-+++.+||.+++|+++|++.|.++....
T Consensus 177 aD~~gA~~--~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 177 ADRPGADR--TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp -SHHHHHH--HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CChHHHHH--HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 99633111 112222222211 13799999999999999999988765543
No 327
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.00 E-value=2.7e-09 Score=77.75 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=64.8
Q ss_pred cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HHh
Q 027985 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEY 151 (216)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~ 151 (216)
+..++..+++.+|++++|+|+.++... |...+... ..+.|+++|+||+|+.+ ........+.+. +..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLP--KDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCC--CCCCHHHHHHHHHHHHHhhc
Confidence 466777889999999999999875321 12222222 23579999999999854 222333333333 223
Q ss_pred CC---cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 152 GI---KFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 152 ~~---~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
+. .+|++||++++|+++++++|.+.+.
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 32 6899999999999999999988764
No 328
>PRK12289 GTPase RsgA; Reviewed
Probab=99.00 E-value=5.8e-09 Score=82.46 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=65.4
Q ss_pred cccccccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEE
Q 027985 79 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFE 157 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (216)
.+....++++|.+++|+|+.++. ....+.+|+..+.. .++|+++|+||+|+.+... ...........++.+++
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~---~~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE---QQQWQDRLQQWGYQPLF 154 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH---HHHHHHHHHhcCCeEEE
Confidence 34444688999999999998765 44455666655533 3689999999999853111 12222333566788999
Q ss_pred EecCCCCCHHHHHHHHHH
Q 027985 158 TSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~ 175 (216)
+||+++.|+++|++.|..
T Consensus 155 iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 155 ISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEcCCCCCHHHHhhhhcc
Confidence 999999999999998864
No 329
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=7.2e-09 Score=81.83 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=84.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCC--------------CC------ccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD--DSF--------------TT------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~--~~~--------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
..+|+-.|.+|||||-..|+- +-. .. +.+.+......+..+.+++ ..++|.|||||
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLDTPGH 91 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLDTPGH 91 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccCCCCc
Confidence 457899999999999998741 111 00 1233444445555556665 68999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC
Q 027985 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 153 (216)
+.++.-....+.-+|.+++|+|+-..-.- ...+.++..+. .++|++=.+||.|.. .....+.+.++-+.+++
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KLfeVcrl---R~iPI~TFiNKlDR~---~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKLFEVCRL---RDIPIFTFINKLDRE---GRDPLELLDEIEEELGI 163 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccH-HHHHHHHHHhh---cCCceEEEeeccccc---cCChHHHHHHHHHHhCc
Confidence 99988888888899999999999542111 11222222222 379999999999963 23345555566565543
No 330
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=5.2e-09 Score=78.69 Aligned_cols=139 Identities=21% Similarity=0.173 Sum_probs=92.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC----------------CCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD----------------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (216)
..++|..+|.-.-|||||..+++.. ..+++...+.+++.....++.++ -.+-.+|.|||..|
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~--rhyahVDcPGHaDY 88 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN--RHYAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC--ceEEeccCCChHHH
Confidence 5699999999999999998887421 12233344445444434444444 57888999999998
Q ss_pred ccccccccccccEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCC--CCHHHHHHHHHHh
Q 027985 78 RTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWMRNIDQHAADNVNK-ILVGNKADMDESKRA--VPTAKGQELADEY 151 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D~~~~~~~--~~~~~~~~~~~~~ 151 (216)
-........+.|++|+|+++.|. ++.+.+ ...++. +.|. ++++||+|+.++.+. .-..+++++...+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y 161 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence 87777788899999999999873 443332 222222 5665 455799999764332 2345566777777
Q ss_pred CC-----cEEEEecC
Q 027985 152 GI-----KFFETSAK 161 (216)
Q Consensus 152 ~~-----~~~~~Sa~ 161 (216)
++ +++.-||.
T Consensus 162 ~f~gd~~Pii~gSal 176 (394)
T COG0050 162 GFPGDDTPIIRGSAL 176 (394)
T ss_pred CCCCCCcceeechhh
Confidence 63 56666654
No 331
>PRK12288 GTPase RsgA; Reviewed
Probab=98.99 E-value=3.3e-09 Score=83.80 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=66.5
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF 164 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (216)
..++|.+++|++.....++..+..|+..+.. .++|+++|+||+|+.+.................+..++++||++++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999888889999998775543 3689999999999964221111122233345667899999999999
Q ss_pred CHHHHHHHHHH
Q 027985 165 NVEQVFFSIAR 175 (216)
Q Consensus 165 ~i~~l~~~l~~ 175 (216)
|+++|+++|..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999998864
No 332
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.97 E-value=3.6e-09 Score=81.86 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=67.3
Q ss_pred ccccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEec
Q 027985 82 TAYYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSA 160 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (216)
...+.++|++++|+|+.++. ++..+.+|+..+... ++|+++|+||+|+.+.. .......+....+..++++||
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~---~~~~~~~~~~~~g~~v~~vSA 146 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE---EEELELVEALALGYPVLAVSA 146 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH---HHHHHHHHHHhCCCeEEEEEC
Confidence 34588999999999999887 778888887766543 68999999999995421 111223334456789999999
Q ss_pred CCCCCHHHHHHHHHH
Q 027985 161 KTNFNVEQVFFSIAR 175 (216)
Q Consensus 161 ~~~~~i~~l~~~l~~ 175 (216)
+++.|+++++..|..
T Consensus 147 ~~g~gi~~L~~~L~~ 161 (287)
T cd01854 147 KTGEGLDELREYLKG 161 (287)
T ss_pred CCCccHHHHHhhhcc
Confidence 999999999987763
No 333
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.96 E-value=2.3e-09 Score=75.55 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=62.6
Q ss_pred ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEE
Q 027985 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFE 157 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (216)
..++...++++|++++|+|+.++...... .+...+. ..+.|+++|+||+|+.+.. . ......+....+..+++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~-~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKE-V--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHH-H--HHHHHHHHHhCCCcEEE
Confidence 34456677889999999999875432221 1122222 1257999999999985311 1 11111333445678999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q 027985 158 TSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
+||+++.|++++++.|.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999987765
No 334
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.95 E-value=2.9e-09 Score=85.99 Aligned_cols=159 Identities=25% Similarity=0.395 Sum_probs=116.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+|+.|+|..++|||.|+.+++...+.+...+--+ .+...+..++...-+-+.|.+|.. ...|...+|++|||
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv 102 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV 102 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence 58999999999999999999999888665444433 444555667777788888998843 23345568999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCC-CCCCH-HHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESK-RAVPT-AKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~-~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
|...+.++++.+..+...+..+. ...+|+++++++.-..... +.+.. ...+..++...+.+|+.++.+|.++...|+
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~ 182 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ 182 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence 99999999999888766664433 4568888888876553322 22222 333333444458999999999999999999
Q ss_pred HHHHHHHHH
Q 027985 172 SIAREIKQR 180 (216)
Q Consensus 172 ~l~~~~~~~ 180 (216)
.+...+...
T Consensus 183 ~~~~k~i~~ 191 (749)
T KOG0705|consen 183 EVAQKIVQL 191 (749)
T ss_pred HHHHHHHHH
Confidence 888777655
No 335
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.95 E-value=7.6e-09 Score=80.47 Aligned_cols=163 Identities=18% Similarity=0.133 Sum_probs=100.5
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc--------------cccceeeEEEEEEEEECCeE-----------
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS--------------FITTIGIDFKIRTIELDGKR----------- 63 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~----------- 63 (216)
.+.....+.|.++|.-+.|||||+-.|.....+.. ...+.+-+.....+-+++.+
T Consensus 111 ~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 111 TEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred ccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence 34466789999999999999999988865444322 12222333444444443322
Q ss_pred ----------EEEEEEeCCCcccccccc--ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985 64 ----------IKLQIWDTAGQERFRTIT--TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131 (216)
Q Consensus 64 ----------~~~~i~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 131 (216)
--+.++|+.||+.|-... ..+-.+.|..++++.+++.-+. ..++. +.-......|+++++||+|
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEH---Lgi~~a~~lPviVvvTK~D 266 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEH---LGIALAMELPVIVVVTKID 266 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-hhhHh---hhhhhhhcCCEEEEEEecc
Confidence 137889999999875433 3344678999999999875321 11222 2222233799999999999
Q ss_pred CCCCCC-CCCHHHHHHHHH----------------------HhC---CcEEEEecCCCCCHHHHHHHHHH
Q 027985 132 MDESKR-AVPTAKGQELAD----------------------EYG---IKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 132 ~~~~~~-~~~~~~~~~~~~----------------------~~~---~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
+.++.. +-..+++..+.+ +.+ +++|.+|+.+|+|++-|.+.+..
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 965321 111122222211 122 47999999999998766555443
No 336
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.93 E-value=2.4e-08 Score=80.73 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=81.2
Q ss_pred eEEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChh----------hHHHHHHHHHHHHH-hc
Q 027985 50 IDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----------SFNNIRNWMRNIDQ-HA 117 (216)
Q Consensus 50 ~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~-~~ 117 (216)
.......+.+ .+ ..+.++|++|+.....-|..++.+++++|||+++++-. .+.+.-..+..+.. ..
T Consensus 223 ~Gi~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 223 TGITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp SSEEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCeeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 3344445555 54 68999999999988899999999999999999986521 22222233333322 22
Q ss_pred CCCCcEEEEEeCCCCC-----CCC----------CC--CCHHHHHHHHHHh------------CCcEEEEecCCCCCHHH
Q 027985 118 ADNVNKILVGNKADMD-----ESK----------RA--VPTAKGQELADEY------------GIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 118 ~~~~p~ivv~nK~D~~-----~~~----------~~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~ 168 (216)
-.+.|++|++||.|+- ... .. -..+.+..|.... .+.++.++|.+.++++.
T Consensus 301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~ 380 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK 380 (389)
T ss_dssp GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence 3478999999999971 111 11 2234444443321 12467888999999999
Q ss_pred HHHHHHHHH
Q 027985 169 VFFSIAREI 177 (216)
Q Consensus 169 l~~~l~~~~ 177 (216)
+|+.+.+.+
T Consensus 381 v~~~v~~~i 389 (389)
T PF00503_consen 381 VFNAVKDII 389 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhcCcC
Confidence 998887643
No 337
>PRK00098 GTPase RsgA; Reviewed
Probab=98.92 E-value=6e-09 Score=81.01 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=63.3
Q ss_pred ccccccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985 84 YYRGAMGILLVYDVTDESSFNN-IRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT 162 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
.+.++|++++|+|+.++.+... +..|+..+.. .++|+++|+||+|+.+.. ..........+..+..++++||++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDL--EEARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCH--HHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4689999999999988765444 4566665543 368999999999995311 112233444556778999999999
Q ss_pred CCCHHHHHHHHH
Q 027985 163 NFNVEQVFFSIA 174 (216)
Q Consensus 163 ~~~i~~l~~~l~ 174 (216)
++|++++++.+.
T Consensus 152 g~gi~~L~~~l~ 163 (298)
T PRK00098 152 GEGLDELKPLLA 163 (298)
T ss_pred CccHHHHHhhcc
Confidence 999999998764
No 338
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=9.3e-09 Score=75.25 Aligned_cols=164 Identities=20% Similarity=0.254 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-c--cccccccccccEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-R--TITTAYYRGAMGIL 92 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~--~~~~~~~~~~d~~i 92 (216)
.+|+++|...+|||++-+....... +...-....+.....-.+.+..+++.+||.||+-.+ . --....++++.++|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMs-PneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccC-CCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 6699999999999998765443322 111111110011111122234478999999997543 2 12244688999999
Q ss_pred EEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCH-HHHHH-----HH----HHhCCcEEEEec
Q 027985 93 LVYDVTDE--SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT-AKGQE-----LA----DEYGIKFFETSA 160 (216)
Q Consensus 93 ~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~-----~~----~~~~~~~~~~Sa 160 (216)
||+|+.+. +.+..+.......-.. .+++.+=+.+.|.|...+...+.. ..+.. ++ ....+.++.+|
T Consensus 107 fvIDaQddy~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS- 184 (347)
T KOG3887|consen 107 FVIDAQDDYMEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS- 184 (347)
T ss_pred EEEechHHHHHHHHHHHHHhhheeec-CCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee-
Confidence 99999763 3333333333332222 346778888999997543332221 11111 11 12224566666
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 027985 161 KTNFNVEQVFFSIAREIKQRLV 182 (216)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~~~ 182 (216)
.-...|-|.|..+++.+..+..
T Consensus 185 IyDHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 185 IYDHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred ecchHHHHHHHHHHHHHhhhch
Confidence 4556888999988888776544
No 339
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.88 E-value=6.5e-09 Score=74.22 Aligned_cols=56 Identities=21% Similarity=0.346 Sum_probs=42.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
...++++|+|.||+|||||+|+|.+... .....|+.|... ..+.++. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeCC---CEEEEECcC
Confidence 4458999999999999999999998665 445566665443 3344443 588999999
No 340
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.82 E-value=1.1e-08 Score=70.93 Aligned_cols=53 Identities=25% Similarity=0.271 Sum_probs=38.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
+++++|.+|+|||||+|+|++..... ...++.+ .....+.+++ .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKT--KHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcc--cceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999877632 2333333 3334455554 5899999995
No 341
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.82 E-value=1.2e-08 Score=80.55 Aligned_cols=83 Identities=18% Similarity=0.055 Sum_probs=64.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeE---------------EEEEEEeCCCccc---
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQER--- 76 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~--- 76 (216)
+++.|+|.|++|||||++.|++... .....|..|.+.....+.+.+.. ..+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998887 66666777777777777766532 3688999999432
Q ss_pred ----cccccccccccccEEEEEEECC
Q 027985 77 ----FRTITTAYYRGAMGILLVYDVT 98 (216)
Q Consensus 77 ----~~~~~~~~~~~~d~~i~v~d~~ 98 (216)
........++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1222334678999999999985
No 342
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.81 E-value=8.2e-09 Score=79.03 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=68.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCe---------------EEEEEEEeCCCccc-
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER- 76 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~- 76 (216)
.+.+++.|+|.|++|||||+|.|++........|..|++.....+.+.+. ...++++|++|.-.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 36899999999999999999999999998888999999988887766442 24689999999321
Q ss_pred ------cccccccccccccEEEEEEECCC
Q 027985 77 ------FRTITTAYYRGAMGILLVYDVTD 99 (216)
Q Consensus 77 ------~~~~~~~~~~~~d~~i~v~d~~~ 99 (216)
...-....+|.+|+++-|+++.+
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 22223345788999999988754
No 343
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.80 E-value=3.1e-08 Score=89.83 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=72.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcc------ccceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccccccc
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDSFTTSF------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTA 83 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~ 83 (216)
.+|+|++|+||||+|+.- +..++... ..+.+ ......+.+.+ +..++|++|.. .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~-~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVG-GTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCC-CCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 579999999999999976 33332211 11111 11223444554 56789999932 12233544
Q ss_pred cc---------ccccEEEEEEECCCh-----h----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 84 YY---------RGAMGILLVYDVTDE-----S----SFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 84 ~~---------~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
++ +..|++|+++|+.+- + ....++..+.++........|+.||+||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 43 358999999998542 1 123456677788888888999999999999854
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.79 E-value=2.2e-08 Score=70.63 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=38.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
.++|+++|.||+|||||+|+|.+... .....++.|.. ...+..+. .+.++||||
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence 57899999999999999999998655 33444544433 23333333 478999999
No 345
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.76 E-value=5.3e-08 Score=72.19 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=78.0
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChh-------hHHHHHHHH---HHHHH-hcCCCCcEEEEEeCCCC
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-------SFNNIRNWM---RNIDQ-HAADNVNKILVGNKADM 132 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~---~~l~~-~~~~~~p~ivv~nK~D~ 132 (216)
++|+.+|++|+.....-|...+.+..++|||+..+... +-..+++-+ ..+.+ ..-..+-+|+.+||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 68999999999998899999999999999999876521 122222222 22211 11224678999999998
Q ss_pred CCCC---------------------------CCCCHH--HHHHHHHH-------------hCCcEEEEecCCCCCHHHHH
Q 027985 133 DESK---------------------------RAVPTA--KGQELADE-------------YGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 133 ~~~~---------------------------~~~~~~--~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~l~ 170 (216)
.... ....+. .++.|... .-|-.+++.|.+.++|+.+|
T Consensus 282 laeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVF 361 (379)
T KOG0099|consen 282 LAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 361 (379)
T ss_pred HHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHH
Confidence 2210 001111 11112111 11456788899999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 027985 171 FSIAREIKQRLVESD 185 (216)
Q Consensus 171 ~~l~~~~~~~~~~~~ 185 (216)
+...+.+......+.
T Consensus 362 nDcrdiIqr~hlrqy 376 (379)
T KOG0099|consen 362 NDCRDIIQRMHLRQY 376 (379)
T ss_pred HHHHHHHHHHHHHHh
Confidence 998888876655543
No 346
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.75 E-value=4.5e-08 Score=78.10 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=67.4
Q ss_pred ccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH----HHHH
Q 027985 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ----ELAD 149 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~ 149 (216)
.+.+..+...+.+.++++++|+|+.+... .|...+..... +.|+++|+||+|+.+ .....+.+. .+++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~-~~piilV~NK~DLl~--k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG-GNPVLLVGNKIDLLP--KSVNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC-CCCEEEEEEchhhCC--CCCCHHHHHHHHHHHHH
Confidence 34566777778889999999999976431 23344444333 579999999999864 223333333 3455
Q ss_pred HhCC---cEEEEecCCCCCHHHHHHHHHHH
Q 027985 150 EYGI---KFFETSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 150 ~~~~---~~~~~Sa~~~~~i~~l~~~l~~~ 176 (216)
..++ .++.+||+++.|++++++.|.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 6665 48999999999999999998654
No 347
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.74 E-value=7.2e-09 Score=77.32 Aligned_cols=158 Identities=18% Similarity=0.166 Sum_probs=87.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc-cccceeeEEEEEEEEECCeEEEEEEEeCCCc----------cccccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTI 80 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~ 80 (216)
.+...+++++|.+++|||+||+.++..+.... ..+..+.......+..+. .+.++|.||- ..+..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 45678999999999999999999976554221 111222223344445544 7889999991 112233
Q ss_pred ccccccc---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC---CCHHHHHH----HHHH
Q 027985 81 TTAYYRG---AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA---VPTAKGQE----LADE 150 (216)
Q Consensus 81 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~----~~~~ 150 (216)
...++-+ .--+++.+|++-+-.-.+. ..++.+.+. ++|+.+|.||+|....... -....++. +...
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~-~~i~~~ge~---~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDN-PEIAWLGEN---NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCCh-HHHHHHhhc---CCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 3333322 2224445555432111111 112233333 7999999999997432110 00111111 1111
Q ss_pred ---hCCcEEEEecCCCCCHHHHHHHHHHH
Q 027985 151 ---YGIKFFETSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 151 ---~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (216)
...+++.+|+.++.|+++|+-.|.+.
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhhh
Confidence 12467789999999999988666543
No 348
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.69 E-value=1.5e-07 Score=66.25 Aligned_cols=86 Identities=21% Similarity=0.105 Sum_probs=55.4
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
|++++|+|+.++.+... .++.. ......+.|+++|+||+|+.+.. . .......+....+..++.+||+++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~-~-~~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKE-V-LRKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHH-H-HHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 68999999988754432 12221 11122368999999999985311 0 11112223333346789999999999999
Q ss_pred HHHHHHHHHHH
Q 027985 169 VFFSIAREIKQ 179 (216)
Q Consensus 169 l~~~l~~~~~~ 179 (216)
+++.+.+...+
T Consensus 76 L~~~i~~~~~~ 86 (155)
T cd01849 76 KESAFTKQTNS 86 (155)
T ss_pred HHHHHHHHhHH
Confidence 99998876543
No 349
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.6e-07 Score=73.04 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=89.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCc--------------cccceeeEEEEEEEEECCe-----------------
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTS--------------FITTIGIDFKIRTIELDGK----------------- 62 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~----------------- 62 (216)
-.++++|+|.-.+|||||+-.|+....+.. ...+.+.......+-++..
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 368999999999999999987754332211 1111111111111111110
Q ss_pred --EEEEEEEeCCCcccccccccccccc--ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985 63 --RIKLQIWDTAGQERFRTITTAYYRG--AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 63 --~~~~~i~D~~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 138 (216)
.--+.++|.+|+..|.......+.. .|.+++|++++..-.+.. ++.+-.+.. -++|++++++|+|+.+....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeeccccchhH
Confidence 1247899999999887766655543 577888888876433322 122222222 27999999999999652110
Q ss_pred -----------------------CCHHHHHHHHHHh----CCcEEEEecCCCCCHHHHHHH
Q 027985 139 -----------------------VPTAKGQELADEY----GIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 139 -----------------------~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
-...++-..+.+. -.++|-+|+..|+|++-+...
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 1111221222222 147999999999998755443
No 350
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=3.2e-07 Score=70.58 Aligned_cols=145 Identities=18% Similarity=0.180 Sum_probs=93.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC----------CCCC----ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD----------SFTT----SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 79 (216)
..++|.-+|.-.-|||||-.+++.- .+.+ ..+...+++....++.+....-.+-=.|.|||..|-.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 4689999999999999998776421 1100 1122234445555666554444677789999999888
Q ss_pred ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC--CCHHHHHHHHHHhC-----
Q 027985 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA--VPTAKGQELADEYG----- 152 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~----- 152 (216)
.......+.|++|+|+.++|..- ...++.+...++. . -..+++.+||.|+.++.+. .-..+++++...++
T Consensus 133 NMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQV-G-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~ 209 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQV-G-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDN 209 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHc-C-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 78888899999999999998432 2223322323333 2 2346777899999754432 22344566666665
Q ss_pred CcEEEEecC
Q 027985 153 IKFFETSAK 161 (216)
Q Consensus 153 ~~~~~~Sa~ 161 (216)
++++.=||.
T Consensus 210 ~PvI~GSAL 218 (449)
T KOG0460|consen 210 TPVIRGSAL 218 (449)
T ss_pred CCeeecchh
Confidence 567776654
No 351
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.68 E-value=4.2e-08 Score=71.47 Aligned_cols=54 Identities=30% Similarity=0.389 Sum_probs=38.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC---------CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
...++++|.+|+|||||||+|++... .....+++|.+ ...+.++. .+.|+||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEecCC---CCEEEeCcC
Confidence 35799999999999999999987432 33445554433 34444443 579999999
No 352
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.68 E-value=9.1e-08 Score=74.11 Aligned_cols=58 Identities=28% Similarity=0.341 Sum_probs=43.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
...++++|+|.||+|||||+|+|.+... .....++.|... ..+..++ .+.++||||.-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence 4568999999999999999999998765 445566665443 3444444 58899999963
No 353
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.6e-07 Score=75.38 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=82.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc-ccccee------------------------------------------
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS-FITTIG------------------------------------------ 49 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~-~~~~~~------------------------------------------ 49 (216)
+...||++.|..++||||++|+++....-++ ..+++.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4568999999999999999999976544222 111110
Q ss_pred eEEEEEEEEECCeE-----EEEEEEeCCCcc---ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC
Q 027985 50 IDFKIRTIELDGKR-----IKLQIWDTAGQE---RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV 121 (216)
Q Consensus 50 ~~~~~~~~~~~~~~-----~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~ 121 (216)
-......+.+++.. -.+.++|.||.+ +...-...+..++|++|+|.++.+..+...- +.+......+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek----~Ff~~vs~~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK----QFFHKVSEEKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH----HHHHHhhccCC
Confidence 00001111111110 157888999943 3445456678899999999999765444332 22333333344
Q ss_pred cEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--------CcEEEEecC
Q 027985 122 NKILVGNKADMDESKRAVPTAKGQELADEYG--------IKFFETSAK 161 (216)
Q Consensus 122 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~ 161 (216)
.++|+-||.|...++ +...+++......+. -.+|+||++
T Consensus 263 niFIlnnkwDasase-~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 263 NIFILNNKWDASASE-PECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred cEEEEechhhhhccc-HHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 556666888985433 233344433333332 258999955
No 354
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.68 E-value=9.2e-08 Score=67.46 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=57.3
Q ss_pred ccccccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985 84 YYRGAMGILLVYDVTDESS--FNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK 161 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (216)
.+.++|++++|+|+.++.. ...+.+ .+.. ...+.|+++|+||+|+.+.. ........+.+.....++.+||+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~---~l~~-~~~~~p~ilVlNKiDl~~~~--~~~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEE---YLKK-EKPHKHLIFVLNKCDLVPTW--VTARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHH---HHHh-ccCCCCEEEEEEchhcCCHH--HHHHHHHHHhcCCcEEEEEeecc
Confidence 4678999999999987632 222222 2222 23358999999999985311 11122233333222345889999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027985 162 TNFNVEQVFFSIAREIK 178 (216)
Q Consensus 162 ~~~~i~~l~~~l~~~~~ 178 (216)
++.|++++++.+.+.+.
T Consensus 79 ~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 79 NPFGKGSLIQLLRQFSK 95 (157)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 99999999999877643
No 355
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.66 E-value=8.5e-08 Score=73.89 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=42.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
...++++|+|.||+|||||+|+|.+... .....++.|... ..+.++. .+.|+||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence 3568999999999999999999998764 344455555433 3445543 5789999996
No 356
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.64 E-value=1.2e-07 Score=67.79 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=40.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
...++++++|.+++|||||+|+|.+..+. ....++.+... ..+.++ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~--~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGI--QWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeee--EEEEec---CCEEEEECCCC
Confidence 34579999999999999999999987653 23334444333 334443 25889999994
No 357
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.62 E-value=1.5e-07 Score=66.33 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=37.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
...+++++|.+++|||||+++|.+..... ..++.+.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45788999999999999999999755422 122222223223333333 699999999
No 358
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.62 E-value=2.9e-08 Score=72.33 Aligned_cols=122 Identities=21% Similarity=0.225 Sum_probs=77.8
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCC
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADM 132 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~ 132 (216)
+.+.++|.+|+......|.+.+.+...++|++.++. ....+..+..+..+..+. -.+.++|+.+||.|+
T Consensus 199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDl 278 (359)
T KOG0085|consen 199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 278 (359)
T ss_pred heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhh
Confidence 567788999988777778888877766666655533 223333333333333332 246789999999998
Q ss_pred CCCC---------------CCCCHHHHHHHHHHh----C------CcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985 133 DESK---------------RAVPTAKGQELADEY----G------IKFFETSAKTNFNVEQVFFSIAREIKQRLVESD 185 (216)
Q Consensus 133 ~~~~---------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~ 185 (216)
.++. ..-..+.++.|..+. + +--+++.|.+.+||+-+|....+.+.+...+..
T Consensus 279 LEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~LkE~ 356 (359)
T KOG0085|consen 279 LEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEY 356 (359)
T ss_pred hhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhHhh
Confidence 5421 122334444554332 1 223566788899999999999998887766543
No 359
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.58 E-value=4.8e-08 Score=68.34 Aligned_cols=60 Identities=25% Similarity=0.217 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC------CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFT------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
-.++++|++|+|||||||.|...... .....+..++.....+.+++ ...|+||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCccc
Confidence 46789999999999999999876321 11112222223344455544 35788999965443
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.57 E-value=1.9e-07 Score=65.73 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=40.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
....+++++|.+|+|||||+|.|.+... .....+..|..... +.++. .+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~~---~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLDN---KIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEecC---CEEEEECCC
Confidence 3468899999999999999999998653 33444555544332 33332 689999999
No 361
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.57 E-value=3e-07 Score=65.76 Aligned_cols=91 Identities=21% Similarity=0.171 Sum_probs=59.6
Q ss_pred ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEe
Q 027985 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETS 159 (216)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (216)
.....+.++|++++|+|+.++...... . +.... .+.|+++|+||+|+.+. .. ......+....+..++.+|
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~-~~k~~ilVlNK~Dl~~~-~~--~~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKIL-GNKPRIIVLNKADLADP-KK--TKKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHh-cCCCEEEEEehhhcCCh-HH--HHHHHHHHHhcCCeEEEEE
Confidence 345667889999999999865432211 1 11111 14689999999998531 11 1111122233345789999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 027985 160 AKTNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~ 179 (216)
|++++|++++.+.+...+..
T Consensus 83 a~~~~gi~~L~~~l~~~l~~ 102 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLKD 102 (171)
T ss_pred CCCcccHHHHHHHHHHHHHH
Confidence 99999999999998887643
No 362
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.54 E-value=1.8e-07 Score=73.43 Aligned_cols=57 Identities=30% Similarity=0.315 Sum_probs=44.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
..++++|+|.|++|||||||+|.+... .....|+.| .....+..+. .+.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~T--k~~q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTT--KGIQWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCcee--cceEEEEcCC---CeEEecCCCcC
Confidence 347899999999999999999998776 445566555 4455566665 48999999953
No 363
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=4e-07 Score=76.55 Aligned_cols=116 Identities=23% Similarity=0.277 Sum_probs=82.7
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCC--CC------------ccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSF--TT------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
.+.+..-+|+++-.-..|||||+..|....- .. ..+.+.+++.....+..-.+.+.++++|+|||-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 4566777899999999999999999863221 10 112233444555555554455899999999999
Q ss_pred ccccccccccccccEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985 76 RFRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 132 (216)
.|.+......+-+|++++++|+... ++..-++ +....+..+++|+||+|.
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlr-------q~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLR-------QAWIEGLKPILVINKIDR 136 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHH-------HHHHccCceEEEEehhhh
Confidence 9999999999999999999999764 3333332 222236678999999993
No 364
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.51 E-value=3.6e-07 Score=71.27 Aligned_cols=153 Identities=17% Similarity=0.147 Sum_probs=82.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCc----------------c--ccceeeEE--------------------EEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTS----------------F--ITTIGIDF--------------------KIR 55 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~----------------~--~~~~~~~~--------------------~~~ 55 (216)
..++|.|+|.-.+|||||+-.|+....+.. + ....+.+. ...
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 478999999999999999877653322111 1 11111110 001
Q ss_pred EEEECCeEEEEEEEeCCCcccccccccccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985 56 TIELDGKRIKLQIWDTAGQERFRTITTAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (216)
Q Consensus 56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 133 (216)
.+.-+.. -.+.|+|.+|++.|-....+.. .--|...+++-++.. -+...++.+..... -.+|+++|.+|+|+.
T Consensus 212 kIce~sa-KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa---L~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 212 KICEDSA-KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA---LHVPVFVVVTKIDMC 286 (641)
T ss_pred eeccccc-eeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh---hcCcEEEEEEeeccC
Confidence 1111111 2478999999998765443322 234555666655431 12222222222222 268999999999985
Q ss_pred CCCCCCCHHHHHHH---HHH--------------------------hCCcEEEEecCCCCCHHHHHHHH
Q 027985 134 ESKRAVPTAKGQEL---ADE--------------------------YGIKFFETSAKTNFNVEQVFFSI 173 (216)
Q Consensus 134 ~~~~~~~~~~~~~~---~~~--------------------------~~~~~~~~Sa~~~~~i~~l~~~l 173 (216)
.. .+..+-.+.+ .+. .-|++|.+|..+|+|++-|...|
T Consensus 287 PA--NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 287 PA--NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred cH--HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 42 1222222222 111 12679999999999987655443
No 365
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.49 E-value=1.3e-05 Score=55.52 Aligned_cols=147 Identities=19% Similarity=0.259 Sum_probs=79.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCC-Ccccccc-------------
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA-GQERFRT------------- 79 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~~~~~------------- 79 (216)
..++|.|.|+||+||||++..+...--...+. - -.+....+.-++..+-|.|+|.. |...+-.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k-v--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYK-V--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCce-e--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 46899999999999999998876432211111 1 12555556667777788888877 3111000
Q ss_pred ------------ccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH
Q 027985 80 ------------ITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQEL 147 (216)
Q Consensus 80 ------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 147 (216)
.....+..+|+ +++|--.+-.+ ..+.+...+........|++.++.+.+. ...++.+
T Consensus 81 V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr--------~P~v~~i 149 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADV--IIIDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR--------HPLVQRI 149 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC--------ChHHHHh
Confidence 00112233453 33444332111 1223334444444457788877776653 1122333
Q ss_pred HHHhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 148 ADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
....++.+| .|.+|-+.+++.+.+.+.
T Consensus 150 k~~~~v~v~----lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 150 KKLGGVYVF----LTPENRNRILNEILSVLK 176 (179)
T ss_pred hhcCCEEEE----EccchhhHHHHHHHHHhc
Confidence 333333333 566666688888877664
No 366
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=5.9e-08 Score=73.50 Aligned_cols=167 Identities=17% Similarity=0.195 Sum_probs=105.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcC---CCCCccccceeeEEEEEEEE---ECC-----------------------
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD---SFTTSFITTIGIDFKIRTIE---LDG----------------------- 61 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~---~~~----------------------- 61 (216)
.+.-+++|.-+|.--.||||+++++.+- .|..+.+...++........ .++
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 4566899999999999999999887542 12222222222111111100 000
Q ss_pred -----eE----EEEEEEeCCCccccccccccccccccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 027985 62 -----KR----IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWMRNIDQHAADNVNKILVGN 128 (216)
Q Consensus 62 -----~~----~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~n 128 (216)
.. -.+.++|.|||+...........-.|++++++..++. ++-+.+ ..+.-.. -..++++-|
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL----aaveiM~--LkhiiilQN 187 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL----AAVEIMK--LKHIIILQN 187 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH----HHHHHhh--hceEEEEec
Confidence 00 1478899999988766666666667888888877653 344443 2232221 245788889
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHh---CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027985 129 KADMDESKRA-VPTAKGQELADEY---GIKFFETSAKTNFNVEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 129 K~D~~~~~~~-~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 183 (216)
|+|+..+... ...+.++.|.... +.+++++||.-++||+-+.++|...+..--++
T Consensus 188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd 246 (466)
T KOG0466|consen 188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD 246 (466)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence 9999653222 2234556665543 36899999999999999999999887644333
No 367
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=5.8e-07 Score=80.14 Aligned_cols=113 Identities=23% Similarity=0.249 Sum_probs=70.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC--CCccc--cceeeEEEEEEEEECCeEEEEEEEeCCCcc--------ccccccccc-
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDSF--TTSFI--TTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAY- 84 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~- 84 (216)
-+|+|++|+||||++..- +..+ ..... ...+..+....+.+.+ ...++||.|.. .....|..+
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 379999999999998752 2222 11111 0011112334455555 67888999922 223444433
Q ss_pred --------cccccEEEEEEECCCh-----h----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 85 --------YRGAMGILLVYDVTDE-----S----SFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 85 --------~~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
.+..|++|+.+|+.+- . -...++..++++........|++|++||.|+..
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3568999999998542 1 123345556777777777899999999999854
No 368
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.47 E-value=3.9e-06 Score=62.63 Aligned_cols=88 Identities=15% Similarity=0.068 Sum_probs=54.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC--CCCCccc-cceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccc------cc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD--SFTTSFI-TTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRT------IT 81 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~------~~ 81 (216)
.....-|.|+|++++|||+|+|.|++. .+..... ...|.........+. +....+.++||+|...... ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 345677899999999999999999998 6643222 222222332322221 1235899999999654322 12
Q ss_pred cccccc--ccEEEEEEECCC
Q 027985 82 TAYYRG--AMGILLVYDVTD 99 (216)
Q Consensus 82 ~~~~~~--~d~~i~v~d~~~ 99 (216)
...+.. ++++||..+...
T Consensus 84 ~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 84 LFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHhCEEEEeccCcc
Confidence 223333 788888887754
No 369
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.45 E-value=6.5e-07 Score=69.02 Aligned_cols=101 Identities=24% Similarity=0.244 Sum_probs=64.9
Q ss_pred CCCccc-cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 027985 71 TAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD 149 (216)
Q Consensus 71 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 149 (216)
+|||-. ........+..+|++++|+|+.++.+.... .+..+. . +.|+++|+||+|+.+. .. ......+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l---~-~kp~IiVlNK~DL~~~--~~-~~~~~~~~~ 74 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR---G-NKPRLIVLNKADLADP--AV-TKQWLKYFE 74 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH---C-CCCEEEEEEccccCCH--HH-HHHHHHHHH
Confidence 456532 223345678899999999999776443221 111111 1 5799999999998531 10 111112223
Q ss_pred HhCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 150 EYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
..+..++.+||+++.|++++.+.|.+.+.+.
T Consensus 75 ~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 75 EKGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred HcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 3456789999999999999999988887654
No 370
>PRK12288 GTPase RsgA; Reviewed
Probab=98.41 E-value=6.4e-07 Score=70.92 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=35.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCC-cccc-----ceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDSFTT-SFIT-----TIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
++|+|.+|+|||||||+|++..... ...+ +..++.....+.+++. ..|+||||..++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 6899999999999999998764321 1111 1111223333444432 3489999975544
No 371
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.41 E-value=1.6e-06 Score=61.17 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~ 38 (216)
+++.|..|+|||||++.+...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998754
No 372
>PRK01889 GTPase RsgA; Reviewed
Probab=98.40 E-value=1.3e-06 Score=69.61 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=58.3
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCC
Q 027985 84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETSAKT 162 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 162 (216)
...++|.+++|+++..+-....+..++..+... +++.++|+||+|+.+.. .+..+.+.. ..+..++.+|+++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~----~~~~~~~~~~~~g~~Vi~vSa~~ 181 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA----EEKIAEVEALAPGVPVLAVSALD 181 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH----HHHHHHHHHhCCCCcEEEEECCC
Confidence 367899999999996444444555555555443 67889999999996521 112222222 3467899999999
Q ss_pred CCCHHHHHHHHH
Q 027985 163 NFNVEQVFFSIA 174 (216)
Q Consensus 163 ~~~i~~l~~~l~ 174 (216)
++|+++|..+|.
T Consensus 182 g~gl~~L~~~L~ 193 (356)
T PRK01889 182 GEGLDVLAAWLS 193 (356)
T ss_pred CccHHHHHHHhh
Confidence 999999988874
No 373
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.39 E-value=3e-06 Score=66.41 Aligned_cols=95 Identities=21% Similarity=0.153 Sum_probs=57.0
Q ss_pred EEEEEEeCCCccccccc----cccc--------cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985 64 IKLQIWDTAGQERFRTI----TTAY--------YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 131 (216)
+.+.|+||||....... ...+ -...+..++|+|++.. .+.+.+. ..+.... -+.-+|+||.|
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a-~~f~~~~---~~~giIlTKlD 270 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQA-KAFHEAV---GLTGIILTKLD 270 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHH-HHHHhhC---CCCEEEEECCC
Confidence 67999999995432211 1111 1246678999999853 2222221 2222211 24478889999
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
... ..-.+..+....+.++..++ +|++++++-.
T Consensus 271 ~t~-----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 271 GTA-----KGGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCC-----CccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 532 12244555677789999998 8898877754
No 374
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=8.1e-07 Score=69.80 Aligned_cols=157 Identities=17% Similarity=0.073 Sum_probs=96.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC-------------------------------CCCCccccceeeEEEEEEEEEC
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD-------------------------------SFTTSFITTIGIDFKIRTIELD 60 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 60 (216)
+...++++++|.-.+||||+-.+++.. ...++.+..-+.+.....+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 356799999999999999997665321 0111112222333333333333
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhh---HHHH-H-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FNNI-R-NWMRNIDQHAADNVNKILVGNKADMDES 135 (216)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~-~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 135 (216)
. -.+.|.|+|||..+-........++|+.++|+++.-.+. |+.- + +....+... ..-...|+++||+|-+..
T Consensus 156 ~--~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 156 N--KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTV 232 (501)
T ss_pred c--eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCcc
Confidence 3 479999999999888777778889999999998854322 2211 1 112222222 224567888999996432
Q ss_pred C--CCCC---HHHHHHHHHHhC------CcEEEEecCCCCCHHHHHH
Q 027985 136 K--RAVP---TAKGQELADEYG------IKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 136 ~--~~~~---~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 171 (216)
. .+.+ .+.+..|.+..+ ..++++|..+|.++++...
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1 1111 233445555444 4699999999999887653
No 375
>PRK13796 GTPase YqeH; Provisional
Probab=98.37 E-value=3.5e-06 Score=67.47 Aligned_cols=84 Identities=24% Similarity=0.368 Sum_probs=56.6
Q ss_pred ccccc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH----HHHHHhCC---cEE
Q 027985 85 YRGAM-GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ----ELADEYGI---KFF 156 (216)
Q Consensus 85 ~~~~d-~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~---~~~ 156 (216)
+...+ .+++|+|+.+.. ..|...+..... +.|+++|+||+|+.+ .....+.+. .+++..++ .++
T Consensus 66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~--~~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP--KSVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred hcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC--CccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 34444 899999997743 123334444333 578999999999954 223333333 33555565 689
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 027985 157 ETSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~ 176 (216)
.+||+++.|++++++.|.+.
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998654
No 376
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.37 E-value=1.2e-06 Score=67.85 Aligned_cols=103 Identities=23% Similarity=0.231 Sum_probs=66.6
Q ss_pred eCCCccc-cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q 027985 70 DTAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELA 148 (216)
Q Consensus 70 D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 148 (216)
-+|||-. ........+..+|++++|+|+.++.+... .++..+ .. +.|+++|+||+|+.+. .. ......+.
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~---~~-~kp~iiVlNK~DL~~~--~~-~~~~~~~~ 76 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKI---IG-NKPRLLILNKSDLADP--EV-TKKWIEYF 76 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHH---hC-CCCEEEEEEchhcCCH--HH-HHHHHHHH
Confidence 4567542 22334567889999999999977643222 111111 12 5799999999998531 10 11122222
Q ss_pred HHhCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985 149 DEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (216)
...+..++.+|++++.|++++.+.+.+.+....
T Consensus 77 ~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~ 109 (287)
T PRK09563 77 EEQGIKALAINAKKGQGVKKILKAAKKLLKEKN 109 (287)
T ss_pred HHcCCeEEEEECCCcccHHHHHHHHHHHHHHHH
Confidence 344567899999999999999999888876543
No 377
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.36 E-value=3.3e-05 Score=61.65 Aligned_cols=144 Identities=17% Similarity=0.267 Sum_probs=82.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc--------------ccccee-----eE-----EEEEEEEE-CCeEEEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS--------------FITTIG-----ID-----FKIRTIEL-DGKRIKLQ 67 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~--------------~~~~~~-----~~-----~~~~~~~~-~~~~~~~~ 67 (216)
...+-|.|+|+-.+||||||++|+...+-+. .+...+ ++ -.-..+.+ ++..+++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 3458899999999999999999964322111 111111 00 01112333 45668899
Q ss_pred EEeCCCc--------cc-----c-cccccc---------------ccc--cccEEEEEEECC--C--hhhHHHHH-HHHH
Q 027985 68 IWDTAGQ--------ER-----F-RTITTA---------------YYR--GAMGILLVYDVT--D--ESSFNNIR-NWMR 111 (216)
Q Consensus 68 i~D~~G~--------~~-----~-~~~~~~---------------~~~--~~d~~i~v~d~~--~--~~s~~~~~-~~~~ 111 (216)
++|+-|- .+ + ..-|.. .++ ..-++++.-|.+ + ++.+..+. +.++
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 9999881 10 0 011111 111 122344444443 1 23333332 2345
Q ss_pred HHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985 112 NIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT 162 (216)
Q Consensus 112 ~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
.|... ++|+++++|-.+- ......+....+..+++++++++++.+
T Consensus 175 ELk~i---gKPFvillNs~~P---~s~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 175 ELKEI---GKPFVILLNSTKP---YSEETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HHHHh---CCCEEEEEeCCCC---CCHHHHHHHHHHHHHhCCcEEEeehHH
Confidence 55554 7899999998884 234456777888899999999998754
No 378
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.36 E-value=1.6e-06 Score=60.05 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=50.3
Q ss_pred cccccccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEec
Q 027985 83 AYYRGAMGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSA 160 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (216)
..+..+|++++|+|+.++.+.. .+.+++.. .. .+.|+++|+||+|+.+.. .......+.+..+..++++||
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~~-~~k~~iivlNK~DL~~~~---~~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKE---VD-PRKKNILLLNKADLLTEE---QRKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---cc-CCCcEEEEEechhcCCHH---HHHHHHHHHHhcCCeEEEEEe
Confidence 4567899999999998865433 33333322 21 368999999999985311 122334445556678999999
Q ss_pred CCCCC
Q 027985 161 KTNFN 165 (216)
Q Consensus 161 ~~~~~ 165 (216)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98753
No 379
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.36 E-value=1e-06 Score=70.37 Aligned_cols=56 Identities=29% Similarity=0.423 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC------CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (216)
.+|+++|.+|+|||||+|+|+... ...+..|+.|... ..+.+++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCC---CCEEEECCCCCC
Confidence 489999999999999999998743 2334556655443 3445543 367999999543
No 380
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.34 E-value=8e-06 Score=66.12 Aligned_cols=85 Identities=11% Similarity=-0.001 Sum_probs=47.5
Q ss_pred EEEEEEeCCCccccccccc----c--ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTITT----A--YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~----~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
+.+.|+||+|.......+. . .....+-+++|+|+.-....... ...+... -.+.-+|+||.|...
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~---~~~~g~IlTKlD~~a--- 253 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDS---VDVGSVIITKLDGHA--- 253 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhc---cCCcEEEEECccCCC---
Confidence 6899999999543321111 1 12346778999998654322221 2223322 235578899999632
Q ss_pred CCCHHHHHHHHHHhCCcEEEEe
Q 027985 138 AVPTAKGQELADEYGIKFFETS 159 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (216)
..-.+..+....+.++.+++
T Consensus 254 --rgG~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 254 --KGGGALSAVAATKSPIIFIG 273 (429)
T ss_pred --CccHHhhhHHHHCCCeEEEc
Confidence 11223445566666666665
No 381
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=5.9e-06 Score=67.87 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=67.5
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
.+...++-|+|+|+||+||||||+.|...-.........+ ..+ ...++.-++++.+.|.. ... ......-+|
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~D--l~~-miDvaKIaD 135 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPSD--LHQ-MIDVAKIAD 135 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChHH--HHH-HHhHHHhhh
Confidence 3455678889999999999999988754322111110001 111 12344568999999842 122 233456789
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDE 134 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~ 134 (216)
++++++|.+-.-..+.+ ++++.+..+ +.| ++-|+++.|+-.
T Consensus 136 LVlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk 177 (1077)
T COG5192 136 LVLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFK 177 (1077)
T ss_pred eeEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeeccccc
Confidence 99999999765333333 223333333 445 455889999854
No 382
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=1e-07 Score=75.15 Aligned_cols=113 Identities=18% Similarity=0.179 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--------CCCC----------ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD--------SFTT----------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~--------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (216)
-+|.|+-.-.+||||.-.+++.. .++. +.+.+.++......+.+.| .++.++||||+-.+
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg--~rinlidtpghvdf 115 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG--HRINLIDTPGHVDF 115 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc--ceEeeecCCCcceE
Confidence 46788889999999998887521 1111 1233334334444445555 78999999999999
Q ss_pred ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
.......++-.|+++.|||++..-..+.+.-|.+. ...++|-.+.+||+|...
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhh
Confidence 99999999999999999999876555556566443 234789999999999744
No 383
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.32 E-value=1.1e-06 Score=66.42 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=34.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCc------cccceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTS------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (216)
.++++|++|+|||||||+|.+...... ...+..++.....+.+.+ ..|+||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence 678999999999999999987543211 111111122223334433 36889999644
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.31 E-value=1e-06 Score=70.48 Aligned_cols=55 Identities=31% Similarity=0.386 Sum_probs=38.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC------CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
.+++|+|.+|+|||||||+|+... ...+..|++|.+ ...+.+++ ...++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCC---CcEEEECCCcc
Confidence 479999999999999999998542 123445555544 34445544 25799999963
No 385
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.31 E-value=1.5e-05 Score=61.23 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=57.7
Q ss_pred EEEEEEeCCCccccccccc------------cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985 64 IKLQIWDTAGQERFRTITT------------AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 131 (216)
+.+.|+||||....+.... ..-...|..++|+|+... .+.+.. ...+.... -+.-+|+||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~-~~~f~~~~---~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQ-AKVFNEAV---GLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHH-HHHHHhhC---CCCEEEEEccC
Confidence 6899999999654322211 111237889999999743 223322 23333222 13577889999
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
... ..-.+..+....+.++.+++ +|++++++-.
T Consensus 229 e~~-----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 229 GTA-----KGGIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CCC-----CccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 633 22244555667788988888 8888877654
No 386
>PRK14974 cell division protein FtsY; Provisional
Probab=98.31 E-value=1.3e-06 Score=68.65 Aligned_cols=96 Identities=14% Similarity=0.073 Sum_probs=56.7
Q ss_pred EEEEEEeCCCccccccc----cccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTI----TTAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
+.+.|+||+|....... ...+ ....|..++|+|+...+. .......+.... -.--+|+||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~~---~~~giIlTKlD~~~--- 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEAV---GIDGVILTKVDADA--- 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhcC---CCCEEEEeeecCCC---
Confidence 46999999995432211 1111 124678899999865432 111122232221 13477889999633
Q ss_pred CCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 138 AVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
..-.+-.++...+.++.+++ +|++++++..+
T Consensus 294 --~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 294 --KGGAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred --CccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 12234455566788998887 89999887643
No 387
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=2.5e-05 Score=57.92 Aligned_cols=157 Identities=21% Similarity=0.302 Sum_probs=97.4
Q ss_pred eeEEEEEcCCCC--cHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEE----EEEEEeCCCccccccccccccccc
Q 027985 15 LIKLLLIGDSGV--GKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRI----KLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 15 ~~~i~v~G~~~s--GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
...++|+|-.|+ ||-+|+.+|....+..+......++++ .+.++++.+ .+.|.-... ++..-........
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h--gwtid~kyysadi~lcishicd--e~~lpn~~~a~pl 79 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH--GWTIDNKYYSADINLCISHICD--EKFLPNAEIAEPL 79 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeee--ceEecceeeecceeEEeecccc--hhccCCcccccce
Confidence 357899999998 999999999988886665555544443 344554433 333322211 1111122334456
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------------C-------------
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-----------------A------------- 138 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-----------------~------------- 138 (216)
.++++|||.+....+..+..|+.......- -.++.++||.|...... .
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset 157 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET 157 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence 678999999999999999998654332211 13466789999632110 0
Q ss_pred -------------CCHHHHHHHHHHhCCcEEEEecCCC------------CCHHHHHHHHHHHH
Q 027985 139 -------------VPTAKGQELADEYGIKFFETSAKTN------------FNVEQVFFSIAREI 177 (216)
Q Consensus 139 -------------~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~l~~~l~~~~ 177 (216)
........++.++++.+++.++.+. .|+..+|..|..++
T Consensus 158 egssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 158 EGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred ccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 1122345566777888999988543 47888888776544
No 388
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.23 E-value=2.1e-06 Score=65.72 Aligned_cols=59 Identities=25% Similarity=0.269 Sum_probs=37.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
..+++|++|+|||||+|+|..... ......+..++.....+.+++. -.|+||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence 467999999999999999975322 2222233333445556666432 3567999975543
No 389
>PRK12289 GTPase RsgA; Reviewed
Probab=98.23 E-value=2.4e-06 Score=67.79 Aligned_cols=56 Identities=27% Similarity=0.289 Sum_probs=34.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-Cccccc-----eeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDSFT-TSFITT-----IGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (216)
++|+|++|+|||||||.|++.... ....+. ..++.....+.+.++ ..|+||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 799999999999999999865432 111221 111222344445432 26889999643
No 390
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=7.4e-05 Score=61.89 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=58.3
Q ss_pred EEEEEEeCCCcccccccccc---ccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTITTA---YYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 138 (216)
+.+.|+||+|....+..... .+. .....++|++... ....+...+..+... .+.-+|+||.|-..
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~---- 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG---- 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc----
Confidence 57999999995432211110 011 1123566777753 344444444444332 35678999999522
Q ss_pred CCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHHH----HHHHHHHHHHhh
Q 027985 139 VPTAKGQELADEYGIKFFETSAKTNFNV-EQVFF----SIAREIKQRLVE 183 (216)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~----~l~~~~~~~~~~ 183 (216)
..-.+..+....+.++.+++ +|.+| ++|.. .|++.+....+.
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL~~A~~~~Lv~r~~~l~~~ 545 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVT--DGQRVPDDLHRANAASLVLRLEDLRRA 545 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEe--CCCCchhhhhcCCHHHHHHHHHHHHhh
Confidence 23455666677788877776 66666 34332 345544444433
No 391
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=8.7e-06 Score=61.21 Aligned_cols=62 Identities=24% Similarity=0.482 Sum_probs=44.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc----cccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS----FITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
....|+|+.+|..|.|||||+.+|++..+... ..|++........+.-.+..+++.|+||.|
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 34579999999999999999999998877443 233333333333334456668899999999
No 392
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=2.8e-05 Score=61.98 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-C--CccccceeeEEE------------------EEEEEEC---------CeEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSF-T--TSFITTIGIDFK------------------IRTIELD---------GKRIK 65 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~-~--~~~~~~~~~~~~------------------~~~~~~~---------~~~~~ 65 (216)
-.++++|++|+||||++..|...-. . .......+.+.+ .....-. -....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 4678999999999999999864311 0 000001111111 1111000 01247
Q ss_pred EEEEeCCCcccccccccc---cc---ccccEEEEEEECCCh-hhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCC
Q 027985 66 LQIWDTAGQERFRTITTA---YY---RGAMGILLVYDVTDE-SSFNNIRNWMRNIDQHAAD--NVNKILVGNKADMDESK 136 (216)
Q Consensus 66 ~~i~D~~G~~~~~~~~~~---~~---~~~d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~ 136 (216)
+.|+||+|....+..... .+ ....-.++|++++.. +.+..+...+......... ..+-=+|+||.|-..
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-- 295 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-- 295 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence 899999995533222111 11 223446888888653 3333332222222111000 012356779999432
Q ss_pred CCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 137 RAVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
..-.+..+....+.++..++ +|.+|.
T Consensus 296 ---~~G~~l~~~~~~~lPi~yvt--~Gq~VP 321 (374)
T PRK14722 296 ---NLGGVLDTVIRYKLPVHYVS--TGQKVP 321 (374)
T ss_pred ---CccHHHHHHHHHCcCeEEEe--cCCCCC
Confidence 33355666777777777776 555544
No 393
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.15 E-value=8.3e-05 Score=61.11 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=50.0
Q ss_pred EEEEEEeCCCcc-------------ccccccccccccccEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027985 64 IKLQIWDTAGQE-------------RFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWMRNIDQHAADNVNKILVGNK 129 (216)
Q Consensus 64 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK 129 (216)
-++.++|.||.- ..-.+...+..+.+++|+|+--.. ...-..+... +.+.-+.+...|+|++|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDL---Vsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDL---VSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHH---HHhcCCCCCeeEEEEee
Confidence 368999999932 122334557778899999984322 1112222222 33444557889999999
Q ss_pred CCCCCCCCCCCHHHHHHHHH
Q 027985 130 ADMDESKRAVPTAKGQELAD 149 (216)
Q Consensus 130 ~D~~~~~~~~~~~~~~~~~~ 149 (216)
.|+.+ ....++..++.+..
T Consensus 489 VDlAE-knlA~PdRI~kIle 507 (980)
T KOG0447|consen 489 VDLAE-KNVASPSRIQQIIE 507 (980)
T ss_pred cchhh-hccCCHHHHHHHHh
Confidence 99965 33455666665554
No 394
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.15 E-value=2.1e-05 Score=60.30 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=63.1
Q ss_pred cccccccEEEEEEECCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985 83 AYYRGAMGILLVYDVTDESSFN-NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK 161 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (216)
--..+.|-+++|+.+.+|+.-. .+.+++-..... ++..++++||+|+.++..... .....+...++..++.+|++
T Consensus 75 p~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 75 PPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred CcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEEEecCc
Confidence 3445578888888888876433 344443333333 677788899999976443332 45667778899999999999
Q ss_pred CCCCHHHHHHHHHH
Q 027985 162 TNFNVEQVFFSIAR 175 (216)
Q Consensus 162 ~~~~i~~l~~~l~~ 175 (216)
+++++.++.+++..
T Consensus 151 ~~~~~~~l~~~l~~ 164 (301)
T COG1162 151 NGDGLEELAELLAG 164 (301)
T ss_pred CcccHHHHHHHhcC
Confidence 99999998877643
No 395
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.13 E-value=6.5e-06 Score=58.58 Aligned_cols=135 Identities=22% Similarity=0.310 Sum_probs=66.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeC-CCccc-------------------
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT-AGQER------------------- 76 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~~~------------------- 76 (216)
+|++.|++|+|||||+++++..--.. ..+.. .++...+.-++..+-|.+.|. .|...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~--Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVG--GFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEE--EEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccc--eEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999986432111 11112 233344445555566677776 33110
Q ss_pred ---cccccccccc----cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC-CCCCCCCCCCHHHHHHHH
Q 027985 77 ---FRTITTAYYR----GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKA-DMDESKRAVPTAKGQELA 148 (216)
Q Consensus 77 ---~~~~~~~~~~----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~ 148 (216)
+.......++ .++ ++|+|--.+-. .....|.+.+......+.|++.++-+. +. ..++.+.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mE-l~~~~F~~~v~~~l~s~~~vi~vv~~~~~~---------~~l~~i~ 145 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKME-LKSPGFREAVEKLLDSNKPVIGVVHKRSDN---------PFLEEIK 145 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTC-CC-CHHHHHHHHHHCTTSEEEEE--SS--S---------CCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhh-hcCHHHHHHHHHHHcCCCcEEEEEecCCCc---------HHHHHHH
Confidence 1111111222 334 67777543210 011223344444444567888887766 32 1345666
Q ss_pred HHhCCcEEEEecCCCCCH
Q 027985 149 DEYGIKFFETSAKTNFNV 166 (216)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i 166 (216)
...++.++.++..+.+.+
T Consensus 146 ~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTTSEEEE--TTTCCCH
T ss_pred hCCCcEEEEeChhHHhhH
Confidence 666788898876655444
No 396
>PRK13695 putative NTPase; Provisional
Probab=98.13 E-value=8.7e-05 Score=53.21 Aligned_cols=22 Identities=36% Similarity=0.768 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
++|+|.|.+|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998653
No 397
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=3.5e-06 Score=69.48 Aligned_cols=114 Identities=20% Similarity=0.165 Sum_probs=77.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------ccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTT------------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
..-+|.+.-.-.+||||+-.+.+.+.-.. +.....++........+. .+++.|+|||||.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRINIIDTPGHV 115 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeEEecCCCce
Confidence 34456777788999999988865322110 112222222222233333 4799999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 133 (216)
.+.-.....++-.|++|+|+++...-.-+...-|.+ +.++ ++|.+..+||+|..
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDRM 169 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhhc
Confidence 999889999999999999999876543344444433 3334 78999999999963
No 398
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.10 E-value=6.8e-06 Score=63.70 Aligned_cols=59 Identities=29% Similarity=0.279 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcc-c-----cceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSF-I-----TTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (216)
-.++++|++|+|||||||.|++....... . .+..++.....+...+ ...++|+||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence 46899999999999999999875442211 1 1111223333444443 2358999997554
No 399
>PRK00098 GTPase RsgA; Reviewed
Probab=98.10 E-value=7.2e-06 Score=63.92 Aligned_cols=58 Identities=29% Similarity=0.302 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCc-cccc-----eeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTS-FITT-----IGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (216)
..++++|++|+|||||+|.|++...... ..+. ..++.....+.+++ ...|+||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence 3588999999999999999987543221 1111 01112223334443 247889999643
No 400
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.08 E-value=3.5e-05 Score=60.51 Aligned_cols=86 Identities=10% Similarity=0.154 Sum_probs=45.5
Q ss_pred EEEEEEeCCCcccccccccccc--------ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 135 (216)
....++++.|......+...++ -..+.+|.|+|+..... .+........+....+ +||+||+|+..+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~--~~~~~~~~~~Qi~~AD---~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE--QMNQFTIAQSQVGYAD---RILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhh--hccccHHHHHHHHhCC---EEEEeccccCCH
Confidence 4567889999654433332221 12577999999964322 1111111112222112 888999998652
Q ss_pred CCCCCHHHHHHHHHHhC--CcEEEEe
Q 027985 136 KRAVPTAKGQELADEYG--IKFFETS 159 (216)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~S 159 (216)
.+.+....+.++ +.++.++
T Consensus 166 -----~~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 166 -----AEKLRERLARINARAPVYTVV 186 (318)
T ss_pred -----HHHHHHHHHHhCCCCEEEEec
Confidence 134555555444 4666553
No 401
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=4.5e-05 Score=61.97 Aligned_cols=131 Identities=20% Similarity=0.218 Sum_probs=81.0
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCC------------C----CCccccceeeEEEEEEEEE--------------C
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDS------------F----TTSFITTIGIDFKIRTIEL--------------D 60 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~------------~----~~~~~~~~~~~~~~~~~~~--------------~ 60 (216)
+..+.-++.|+-.-..|||||-..|...- | ..+.+...++...-..+.+ +
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 44556677889999999999998884211 1 0111222222222111111 3
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC
Q 027985 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP 140 (216)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~ 140 (216)
+..+-+.++|.|||-.+++.....+|-.|++++|+|..+.--.+.-.-..+.+. .++..++++||+|..=-+.++.
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DRAlLELq~~ 170 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDRALLELQLS 170 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhHHHHhhcCC
Confidence 334789999999999999999999999999999999876422221111122232 2455578889999643334555
Q ss_pred HHHHH
Q 027985 141 TAKGQ 145 (216)
Q Consensus 141 ~~~~~ 145 (216)
.+++-
T Consensus 171 ~EeLy 175 (842)
T KOG0469|consen 171 QEELY 175 (842)
T ss_pred HHHHH
Confidence 55543
No 402
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.01 E-value=0.0002 Score=51.54 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=58.4
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHH
Q 027985 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA 142 (216)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 142 (216)
.+.+.|+|+|+.... .....+..+|.+++++..+. .+...+..+++.+... +.|+.+|+|+.|... ....
T Consensus 92 ~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~----~~~~ 161 (179)
T cd03110 92 GAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND----EIAE 161 (179)
T ss_pred CCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc----chHH
Confidence 478999999975422 23345678999999998873 4666677766666544 467889999999632 1345
Q ss_pred HHHHHHHHhCCcEE
Q 027985 143 KGQELADEYGIKFF 156 (216)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (216)
+++++.+..+++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 56677777777654
No 403
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.00 E-value=1.2e-05 Score=65.30 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=43.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
.+.|.++|.|++||||+||.|.+.+. ..+..|+.|.. ..++.+.. .+.+-|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKH--FQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKH--FQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcce--eEEEEcCC---CceecCCCCc
Confidence 79999999999999999999998766 55667777644 44555655 5788899994
No 404
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.98 E-value=1.4e-05 Score=65.22 Aligned_cols=85 Identities=18% Similarity=0.072 Sum_probs=48.7
Q ss_pred EEEEEEeCCCcccccccc----c--cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTIT----T--AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
..+.|+||+|........ . ..+...|.+++|+|+.... +..+....+.... ...-+|+||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a--- 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA--- 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC---
Confidence 378999999965432111 1 1233578899999986542 2222222232221 12367789999532
Q ss_pred CCCHHHHHHHHHHhCCcEEEEe
Q 027985 138 AVPTAKGQELADEYGIKFFETS 159 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (216)
..-.+..+....+.++.+++
T Consensus 247 --~~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 --KGGGALSAVAETGAPIKFIG 266 (437)
T ss_pred --cccHHHHHHHHHCcCEEEEe
Confidence 22345566677777777776
No 405
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=8.5e-05 Score=60.24 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=53.1
Q ss_pred EEEEEEeCCCcccccc----ccccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRT----ITTAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
..+.++||+|...... ....+ .....-.++|+|++.. ...+.+.+..+... -.-=+|+||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~----~~~~~I~TKlDEt~--- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGH----GIHGCIITKVDEAA--- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeeeCCC---
Confidence 3678999999443211 11111 1123447788888732 22333333333221 23367789999532
Q ss_pred CCCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHHH
Q 027985 138 AVPTAKGQELADEYGIKFFETSAKTNFNV-EQVFF 171 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~ 171 (216)
..-.+-.+....+.++..++ +|.+| +++..
T Consensus 341 --~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~ 371 (420)
T PRK14721 341 --SLGIALDAVIRRKLVLHYVT--NGQKVPEDLHE 371 (420)
T ss_pred --CccHHHHHHHHhCCCEEEEE--CCCCchhhhhh
Confidence 33355667777888888886 77777 45543
No 406
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=8.6e-05 Score=59.38 Aligned_cols=91 Identities=12% Similarity=0.043 Sum_probs=51.5
Q ss_pred EEEEEEeCCCccccccc----ccccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
+.+.|+||+|....... ...++ ...+.+++|+|++-. ..++...+..+... ..-=+|+||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence 57899999995432211 11222 234567888887532 22333333334321 23367789999533
Q ss_pred CCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 138 AVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
..-.+-.+....+.++..++ +|+++.
T Consensus 392 --k~G~iLni~~~~~lPIsyit--~GQ~VP 417 (436)
T PRK11889 392 --SSGELLKIPAVSSAPIVLMT--DGQDVK 417 (436)
T ss_pred --CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 23345667777888777776 555553
No 407
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.95 E-value=0.00021 Score=58.45 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=53.6
Q ss_pred EEEEEEeCCCccccc----cccccccc---cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFR----TITTAYYR---GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 136 (216)
+.+.|+|++|..... .....++. .-.-+++|++++-. ...+.+.+..+... + +--+|.||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 578999999954322 11222222 22356777887532 23333333333221 1 2367889999532
Q ss_pred CCCCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHHH
Q 027985 137 RAVPTAKGQELADEYGIKFFETSAKTNFNV-EQVFF 171 (216)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~ 171 (216)
..-.+..+....+.++..++ +|.+| +++..
T Consensus 372 ---~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl~~ 402 (424)
T PRK05703 372 ---SLGSILSLLIESGLPISYLT--NGQRVPDDIKV 402 (424)
T ss_pred ---cccHHHHHHHHHCCCEEEEe--CCCCChhhhhh
Confidence 22356677788888888876 67775 45443
No 408
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.93 E-value=0.00034 Score=54.92 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=52.7
Q ss_pred EEEEEEeCCCcccccccccc-----cc---ccccEEEEEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTITTA-----YY---RGAMGILLVYDVTDESSFNNIRNWMRNIDQ-HAADNVNKILVGNKADMDE 134 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~ 134 (216)
+...++++.|.......... .+ -..|.+|-|+|+..-.. .+......+.. ....+ ++|+||+|+.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~--~~~~~~~~~~~Qia~AD---~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE--GLDAIAELAEDQLAFAD---VIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh--hHHHHHHHHHHHHHhCc---EEEEecccCCC
Confidence 45678888885543222222 12 23677999999954322 11111111211 11112 88999999976
Q ss_pred CCCCCCHHHHHHHHHHhC--CcEEEEecCCCCCHHHHHH
Q 027985 135 SKRAVPTAKGQELADEYG--IKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~ 171 (216)
.. ..+..+.....++ ..++.++. .+.+..+++.
T Consensus 160 ~~---~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 160 AE---ELEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred HH---HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 33 1444555556555 67888775 3344444443
No 409
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.90 E-value=2.3e-05 Score=57.24 Aligned_cols=92 Identities=18% Similarity=0.108 Sum_probs=52.0
Q ss_pred EEEEEEeCCCccccccc----ccccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
+.+.|+||+|....... +..++ ...+-+++|.+++... +.+..... +.... + +-=+|+||.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~~~-~~~~~--~-~~~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQALA-FYEAF--G-IDGLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHHHH-HHHHS--S-TCEEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHHHH-Hhhcc--c-CceEEEEeecCCC---
Confidence 46899999995433211 11111 1456688899987543 23322222 22222 1 2356689999422
Q ss_pred CCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 138 AVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
..-.+-.+....+.++-.++ +|+++++
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYIT--TGQRVDD 181 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred --CcccceeHHHHhCCCeEEEE--CCCChhc
Confidence 33456677778888888777 6666643
No 410
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.90 E-value=0.00011 Score=51.28 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=34.8
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 131 (216)
+.+.|+|++|... ....++..+|.+++|....-.+.+.-++- ..+. .--++++||.|
T Consensus 92 ~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~------~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA--GIME------IADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh------hcCEEEEeCCC
Confidence 6789999988542 22348888998998887753333222111 1111 12278889987
No 411
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.89 E-value=0.00018 Score=51.45 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=44.0
Q ss_pred EEEEEEeCCCcccccccc----ccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
..+.|+|++|........ ..+ ....+.+++|++...... .+ ++...+.... + ..-+|.||.|.....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~--~-~~~viltk~D~~~~~- 155 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEAL--G-ITGVILTKLDGDARG- 155 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhC--C-CCEEEEECCcCCCCc-
Confidence 468889999964221111 111 134888999999864332 22 3333333332 2 346777999964311
Q ss_pred CCCHHHHHHHHHHhCCcEEE
Q 027985 138 AVPTAKGQELADEYGIKFFE 157 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ 157 (216)
..+...+...++++..
T Consensus 156 ----g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 ----GAALSIRAVTGKPIKF 171 (173)
T ss_pred ----chhhhhHHHHCcCeEe
Confidence 1222356666655443
No 412
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.88 E-value=2.8e-05 Score=59.42 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=42.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCC------CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
......++|+|.||+|||||||.+.... ......|+.|...... +.+.+.. .+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRP-PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCC-ceEEecCCCc
Confidence 4567899999999999999999985332 2345667766555432 3343332 5888999994
No 413
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=7.5e-05 Score=59.44 Aligned_cols=92 Identities=10% Similarity=0.095 Sum_probs=51.6
Q ss_pred EEEEEEeCCCcccccccc----ccccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTIT----TAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
+.+.|+||+|.......+ ..+.. ..+.+++|.++. ....++...+..+.. -.+--+|+||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~----l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE----IPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence 588999999964322111 11221 335566677663 233333333332221 123467789999532
Q ss_pred CCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 138 AVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
..-.+-.+....+.++..++ +|++|.+
T Consensus 357 --~~G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 357 --RIGDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred --CccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 33455667788888887776 6666654
No 414
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.83 E-value=0.00047 Score=56.96 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=51.9
Q ss_pred EEEEEeCCCcccccc---cccccccc---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985 65 KLQIWDTAGQERFRT---ITTAYYRG---AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 65 ~~~i~D~~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 138 (216)
.+.++||+|...... .....+.. ..-.++|+|++.. ...+.+....+.. ....-+|+||.|-..
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~----~~~~g~IlTKlDet~---- 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRG----PGLAGCILTKLDEAA---- 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhcc----CCCCEEEEeCCCCcc----
Confidence 578999999332111 01111111 1226788888642 2233222222222 223466789999522
Q ss_pred CCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHHH
Q 027985 139 VPTAKGQELADEYGIKFFETSAKTNFNV-EQVFF 171 (216)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~ 171 (216)
..-.+..+....+.++.+++ +|++| +++..
T Consensus 406 -~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~ 436 (484)
T PRK06995 406 -SLGGALDVVIRYKLPLHYVS--NGQRVPEDLHL 436 (484)
T ss_pred -cchHHHHHHHHHCCCeEEEe--cCCCChhhhcc
Confidence 34456677778888888886 78888 65553
No 415
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.80 E-value=0.00012 Score=41.57 Aligned_cols=43 Identities=28% Similarity=0.320 Sum_probs=29.3
Q ss_pred ccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985 88 AMGILLVYDVTDE--SSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131 (216)
Q Consensus 88 ~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 131 (216)
.+.++|++|.+.. .+++.-...+..++..+. +.|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 5679999999764 566777777888888776 689999999998
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.78 E-value=0.00036 Score=56.92 Aligned_cols=85 Identities=19% Similarity=0.107 Sum_probs=49.4
Q ss_pred EEEEEEeCCCcccccccccc------ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTITTA------YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
+.+.|+||+|....+..... .....+.+++|+|+... .+..+....+.... + ..=+|.||.|...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~-i~giIlTKlD~~~--- 253 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--G-LTGVVLTKLDGDA--- 253 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence 57899999995332211111 12346778999998643 33333334444322 1 2356689999522
Q ss_pred CCCHHHHHHHHHHhCCcEEEEe
Q 027985 138 AVPTAKGQELADEYGIKFFETS 159 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (216)
..-.+..+....+.++.+++
T Consensus 254 --~~G~~lsi~~~~~~PI~fi~ 273 (428)
T TIGR00959 254 --RGGAALSVRSVTGKPIKFIG 273 (428)
T ss_pred --cccHHHHHHHHHCcCEEEEe
Confidence 12236777777888777765
No 417
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.76 E-value=0.00055 Score=54.73 Aligned_cols=155 Identities=16% Similarity=0.214 Sum_probs=78.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC---CCccccceeeEEEEE-----------------EEEEC----------CeEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSF---TTSFITTIGIDFKIR-----------------TIELD----------GKRI 64 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~----------~~~~ 64 (216)
.--|+++|+.|+||||-+-.|...-. ......-.|++.|-. .+..+ -...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 45688999999999999887743222 111111112221111 00000 0124
Q ss_pred EEEEEeCCCcccccccc----cccccc--ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985 65 KLQIWDTAGQERFRTIT----TAYYRG--AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 65 ~~~i~D~~G~~~~~~~~----~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 138 (216)
.+.++||.|...++... ..++.. ..-..+|++++. ..++++..+..+.... + -=+++||.|=.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~---i-~~~I~TKlDET----- 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFP---I-DGLIFTKLDET----- 351 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCC---c-ceeEEEccccc-----
Confidence 68999999965444322 222222 223556677753 4556666555554432 1 24567999932
Q ss_pred CCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHH----HHHHHHHHHHHh
Q 027985 139 VPTAKGQELADEYGIKFFETSAKTNFNV-EQVF----FSIAREIKQRLV 182 (216)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~----~~l~~~~~~~~~ 182 (216)
-..-..-.+....+.++..++ +|.+| ++++ .+|++.+.....
T Consensus 352 ~s~G~~~s~~~e~~~PV~YvT--~GQ~VPeDI~va~~~~Lv~~~~g~~~ 398 (407)
T COG1419 352 TSLGNLFSLMYETRLPVSYVT--NGQRVPEDIVVANPDYLVRRILGTFA 398 (407)
T ss_pred CchhHHHHHHHHhCCCeEEEe--CCCCCCchhhhcChHHHHHHHhcccc
Confidence 233344455566666655554 45444 2333 355655554433
No 418
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.75 E-value=2.5e-05 Score=61.58 Aligned_cols=57 Identities=21% Similarity=0.373 Sum_probs=44.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
...+++.|+|.|++||||+||.|..... .....|+.| ..+..+..+. .+.|.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT--~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT--RSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch--hhhhheeccC---CceeccCCce
Confidence 4579999999999999999999986655 556666665 4455666665 7899999994
No 419
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00022 Score=61.76 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=54.8
Q ss_pred EEEEEEeCCCccccc----cccccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFR----TITTAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
..+.|+||+|....+ ...... ....+-.++|+|++.. .+.+.+....+......+ +-=+|+||.|-..
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~-i~glIlTKLDEt~--- 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGED-VDGCIITKLDEAT--- 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCC-CCEEEEeccCCCC---
Confidence 468999999932211 111111 1234457888888742 223333333333221111 3357789999532
Q ss_pred CCCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHHH
Q 027985 138 AVPTAKGQELADEYGIKFFETSAKTNFNV-EQVFF 171 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~ 171 (216)
..-.+-.+....+.++.+++ +|++| +++..
T Consensus 338 --~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~ 368 (767)
T PRK14723 338 --HLGPALDTVIRHRLPVHYVS--TGQKVPEHLEL 368 (767)
T ss_pred --CccHHHHHHHHHCCCeEEEe--cCCCChhhccc
Confidence 23355667778888888887 78887 56554
No 420
>PRK10867 signal recognition particle protein; Provisional
Probab=97.71 E-value=0.0004 Score=56.71 Aligned_cols=85 Identities=19% Similarity=0.102 Sum_probs=47.8
Q ss_pred EEEEEEeCCCcccccccc----ccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
+.+.|+||+|....+... ..+ .-..+.+++|+|+... .++.+....+.... + ..-+|+||.|...
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~-i~giIlTKlD~~~--- 254 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--G-LTGVILTKLDGDA--- 254 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence 579999999953321111 111 1245678999998643 23333333333321 1 2356779999522
Q ss_pred CCCHHHHHHHHHHhCCcEEEEe
Q 027985 138 AVPTAKGQELADEYGIKFFETS 159 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (216)
..-.+..+....+.++.+++
T Consensus 255 --rgG~alsi~~~~~~PI~fig 274 (433)
T PRK10867 255 --RGGAALSIRAVTGKPIKFIG 274 (433)
T ss_pred --cccHHHHHHHHHCcCEEEEe
Confidence 12236667777888777766
No 421
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.68 E-value=0.00023 Score=46.30 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=50.2
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 18 LLLIG-DSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 18 i~v~G-~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
|+|.| ..|+||||+...+...-.... .+ ...+..+.. +.+.|+|+|+..... ....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~-------vl~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG-KR-------VLLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC-Cc-------EEEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56666 568999999777643222111 11 111222222 679999999964322 2356778999999997
Q ss_pred CCChhhHHHHHHHHH
Q 027985 97 VTDESSFNNIRNWMR 111 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~ 111 (216)
.+ ..++..+.++++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 456666666555
No 422
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.002 Score=51.96 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=54.2
Q ss_pred EEEEEEeCCCcccccc----cccccccc--cc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRT----ITTAYYRG--AM-GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 136 (216)
+.+.|+||+|...... ....++.. .+ -.++|+|++.. ...+.+.+..+... -+-=+|+||.|-..
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~-- 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETT-- 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCC--
Confidence 5799999999543221 11122221 12 47889998754 33333333333221 13467789999532
Q ss_pred CCCCHHHHHHHHHHhCCcEEEEecCCCCCH-HHHHH
Q 027985 137 RAVPTAKGQELADEYGIKFFETSAKTNFNV-EQVFF 171 (216)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~ 171 (216)
..-.+-.+....+.++..++ +|+++ +++..
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~ 357 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT--DGQIVPHNISI 357 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe--CCCCChhhhhh
Confidence 23345666777788877776 67777 55543
No 423
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.00046 Score=52.86 Aligned_cols=91 Identities=12% Similarity=0.041 Sum_probs=51.7
Q ss_pred EEEEEEeCCCccccccc----ccccc--ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
+.+.|+||+|....... +..++ ...+-.++|+|++.. .+++..+...+.. -.+-=+|+||.|-..
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~--- 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETA--- 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCC---
Confidence 68999999995432211 11222 234567889998632 2233333333332 123367789999533
Q ss_pred CCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 138 AVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
..-.+-.+....+.++..++ +|+++.
T Consensus 226 --~~G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 226 --SSGELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred --CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 23345566777788877776 565554
No 424
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.61 E-value=0.00053 Score=43.59 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=46.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc-cccccccccEEEEEEE
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-TTAYYRGAMGILLVYD 96 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 96 (216)
+++.|..|+||||+...+...-.... .. ..-++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g--------~~--v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG--------KR--VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--------Ce--EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999888754332111 11 11111 6888999986432221 1345667888888887
Q ss_pred CCChhhHHHHHH
Q 027985 97 VTDESSFNNIRN 108 (216)
Q Consensus 97 ~~~~~s~~~~~~ 108 (216)
... .+......
T Consensus 68 ~~~-~~~~~~~~ 78 (99)
T cd01983 68 PEA-LAVLGARR 78 (99)
T ss_pred Cch-hhHHHHHH
Confidence 764 34444433
No 425
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00056 Score=55.33 Aligned_cols=139 Identities=21% Similarity=0.258 Sum_probs=70.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-CC----C---cccc--------------ceeeEEEEEE-E-----EECCeEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDS-FT----T---SFIT--------------TIGIDFKIRT-I-----ELDGKRIKL 66 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~-~~----~---~~~~--------------~~~~~~~~~~-~-----~~~~~~~~~ 66 (216)
..-++|+|++|+||||++..|...- .. . ..++ ..+....... . ......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468899999999999998885321 00 0 0000 0011111000 0 001112578
Q ss_pred EEEeCCCccccc----cccccccc-----cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 67 QIWDTAGQERFR----TITTAYYR-----GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 67 ~i~D~~G~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
.|+||+|..... ..+..+++ ...-.++|+|++... ..+......+... -+-=+|+||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt~--- 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEAD--- 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence 999999954221 11122221 123577888886532 2232322323221 23367789999532
Q ss_pred CCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985 138 AVPTAKGQELADEYGIKFFETSAKTNFNV 166 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (216)
..-.+-.+....+.++..++ +|++|
T Consensus 374 --~~G~il~i~~~~~lPI~ylt--~GQ~V 398 (432)
T PRK12724 374 --FLGSFLELADTYSKSFTYLS--VGQEV 398 (432)
T ss_pred --CccHHHHHHHHHCCCEEEEe--cCCCC
Confidence 23345666777787776665 44444
No 426
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.58 E-value=0.0001 Score=53.40 Aligned_cols=113 Identities=15% Similarity=0.216 Sum_probs=64.8
Q ss_pred EEEEEeCCCccccc-c--ccccc---ccc---ccEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 65 KLQIWDTAGQERFR-T--ITTAY---YRG---AMGILLVYDVT-DESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 65 ~~~i~D~~G~~~~~-~--~~~~~---~~~---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
.+.|+|.||+-+.- . ..+.+ +.. --+++|++|.. --++.+.+...+..+.....-.+|.|=|++|+|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 57899999965421 1 11111 111 22356666652 113334444555666666555789999999999843
Q ss_pred CCCCCCHHHHHHH-------------------------------HHHhC-CcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 135 SKRAVPTAKGQEL-------------------------------ADEYG-IKFFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 135 ~~~~~~~~~~~~~-------------------------------~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
. ..+++++.| ...++ +.+++....+.+.|+.++..|-..+.-.
T Consensus 179 ~---~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~ 253 (273)
T KOG1534|consen 179 D---KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYG 253 (273)
T ss_pred h---hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhc
Confidence 2 111111111 11223 3688888888899999998877666543
No 427
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.54 E-value=0.00051 Score=47.05 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSF 40 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~ 40 (216)
...++|.|++|+|||+|++.+...-.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34689999999999999999887654
No 428
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.49 E-value=5.5e-05 Score=55.65 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=38.7
Q ss_pred EEEEEEeCCCcccccccc------ccccccccEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985 64 IKLQIWDTAGQERFRTIT------TAYYRGAMGILLVYDVT------DESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~------~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 131 (216)
..+.++|.||+-+.-..+ ...+++.+.-+.++... +|..+ +...+..+.....-..|-|=|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~--iS~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKF--ISSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHH--HHHHHHHHHHHHhhcccchhhhhHhH
Confidence 368999999976532211 12334455555554443 34333 33334444444444678899999999
Q ss_pred CC
Q 027985 132 MD 133 (216)
Q Consensus 132 ~~ 133 (216)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 83
No 429
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.48 E-value=9.9e-05 Score=49.42 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 430
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.00011 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.719 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
++|+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 431
>PRK08118 topology modulation protein; Reviewed
Probab=97.45 E-value=0.00011 Score=52.23 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.+|+|+|++|||||||.+.|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999987543
No 432
>PRK07261 topology modulation protein; Provisional
Probab=97.43 E-value=0.00012 Score=52.42 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.+|+|+|++|||||||.+.|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998643
No 433
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.43 E-value=0.0021 Score=44.29 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=60.8
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECC
Q 027985 19 LLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98 (216)
Q Consensus 19 ~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (216)
+.-|.+|+|||++--.+...-... .....-.+.. .......+.+.|+|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~-~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKL-GKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 356788999999966653221100 0000000000 0001111679999999853 233346788899999999886
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985 99 DESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (216)
Q Consensus 99 ~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 132 (216)
..++..+...++.+.... ...++.+|+|+.+.
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 355555555555554432 24577899999974
No 434
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.42 E-value=0.0016 Score=46.81 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 67899999999999999988764
No 435
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.41 E-value=0.0016 Score=54.55 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
=+++.|++|+||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4577999999999999998654
No 436
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.40 E-value=0.0008 Score=44.04 Aligned_cols=100 Identities=16% Similarity=0.086 Sum_probs=58.5
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCCh
Q 027985 21 IGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE 100 (216)
Q Consensus 21 ~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 100 (216)
=+..|+||||+...|...-.........-.+. ..... ..+.|+|+|+.... .....+..+|.++++.+.+ .
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~-----d~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDL-----DLQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-L 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC-----CCCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-h
Confidence 35577999998777643221110111111111 11111 16899999986432 2334677899999998776 4
Q ss_pred hhHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 027985 101 SSFNNIRNWMRNIDQHAAD-NVNKILVGNK 129 (216)
Q Consensus 101 ~s~~~~~~~~~~l~~~~~~-~~p~ivv~nK 129 (216)
.++..+..+++.+...... ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6777777777777665433 3466777774
No 437
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.40 E-value=0.00013 Score=50.29 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~ 39 (216)
|+++|+||||||||++.|....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7899999999999999987443
No 438
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.36 E-value=0.00022 Score=41.51 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
-.+|.|+.|+|||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998753
No 439
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.32 E-value=0.00015 Score=51.30 Aligned_cols=22 Identities=18% Similarity=0.511 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 440
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.31 E-value=0.0016 Score=48.19 Aligned_cols=47 Identities=17% Similarity=0.115 Sum_probs=32.5
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 132 (216)
...+.+|.+|+|+|.+- .++...++..+..... . -.++.+|+||.|-
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~taeri~~L~~el-g-~k~i~~V~NKv~e 197 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL-G-IKRIFVVLNKVDE 197 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh-C-CceEEEEEeeccc
Confidence 34678999999999973 6666665543333333 2 2689999999993
No 441
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.29 E-value=0.00027 Score=42.39 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~ 39 (216)
|++.|.+|+||||+.+.|...-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999987653
No 442
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00027 Score=51.62 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|++|||||||++.+..-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 47899999999999999887654
No 443
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.20 E-value=0.04 Score=39.00 Aligned_cols=146 Identities=13% Similarity=0.123 Sum_probs=94.8
Q ss_pred cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (216)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (216)
.+....+.-.|+++|..+.++..|..++....-. +. ..+.... .+. .|.. ....-..
T Consensus 8 ~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~-l~Vh~a~-sLP-----Lp~e------~~~lRpr 64 (176)
T PF11111_consen 8 DKLPELNTATILLVGTEEALLQQLAEAMLEEDKE----------FK-LKVHLAK-SLP-----LPSE------NNNLRPR 64 (176)
T ss_pred ccCCCcceeEEEEecccHHHHHHHHHHHHhhccc----------ee-EEEEEec-cCC-----Cccc------ccCCCce
Confidence 3445567889999999999999999999863211 11 1111110 000 1110 1111234
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
.|.++|++|.....++..++.-+..+......++-++ +++-... .+...+....+..++..++++++.+.-.+.++..
T Consensus 65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCf-l~t~a~~-~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~ 142 (176)
T PF11111_consen 65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCF-LATNAGR-ESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT 142 (176)
T ss_pred eEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEE-EEcCCCc-ccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence 7999999999999999998887766644333344444 4444433 2345678899999999999999999888877776
Q ss_pred HHHHHHHHHHH
Q 027985 168 QVFFSIAREIK 178 (216)
Q Consensus 168 ~l~~~l~~~~~ 178 (216)
.+-+.|.+.+.
T Consensus 143 ~lAqRLL~~lq 153 (176)
T PF11111_consen 143 SLAQRLLRMLQ 153 (176)
T ss_pred HHHHHHHHHHH
Confidence 66666665553
No 444
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.20 E-value=0.00012 Score=57.91 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 73 (216)
+.|.++|.|++||||+||+|-...+ .....++.| -....+.... ++.++|.||
T Consensus 308 ISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET--KVWQYItLmk---rIfLIDcPG 361 (572)
T KOG2423|consen 308 ISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET--KVWQYITLMK---RIFLIDCPG 361 (572)
T ss_pred eeeeeecCCCCchHHHHHHHhhcccccccCCCCcc--hHHHHHHHHh---ceeEecCCC
No 445
>PRK06217 hypothetical protein; Validated
Probab=97.19 E-value=0.00035 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.+|+|+|.+|||||||.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998754
No 446
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.19 E-value=0.0012 Score=44.98 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999987653
No 447
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.17 E-value=0.00036 Score=47.78 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF 40 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~ 40 (216)
.++|+|+.|+|||||++.+.+...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 578999999999999998887653
No 448
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.14 E-value=0.00037 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-|+|+|++|||||||++-+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999775543
No 449
>PRK03839 putative kinase; Provisional
Probab=97.12 E-value=0.00041 Score=49.98 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
+|+|+|+|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988543
No 450
>PRK01889 GTPase RsgA; Reviewed
Probab=97.12 E-value=0.00058 Score=54.64 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSF 40 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~ 40 (216)
-.++|+|.+|+|||||+|.|++...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3789999999999999999986443
No 451
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.11 E-value=0.0004 Score=46.78 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~ 38 (216)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998655
No 452
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.09 E-value=0.0016 Score=52.49 Aligned_cols=85 Identities=18% Similarity=0.044 Sum_probs=47.0
Q ss_pred EEEEEEeCCCcccccccccc------ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTITTA------YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
+.+.|+||+|....+...-. ..-+.|=+++|+|+.-.+...+... .+..... -.=+|+||.|... +
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~---aF~e~l~---itGvIlTKlDGda--R 254 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAK---AFNEALG---ITGVILTKLDGDA--R 254 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHH---HHhhhcC---CceEEEEcccCCC--c
Confidence 57999999995443322211 2234677899999965544333322 2322211 1246779999622 1
Q ss_pred CCCHHHHHHHHHHhCCcEEEEe
Q 027985 138 AVPTAKGQELADEYGIKFFETS 159 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (216)
--.+.+.....+.++-++.
T Consensus 255 ---GGaALS~~~~tg~PIkFiG 273 (451)
T COG0541 255 ---GGAALSARAITGKPIKFIG 273 (451)
T ss_pred ---chHHHhhHHHHCCCeEEEe
Confidence 1233445566677666665
No 453
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.07 E-value=0.00079 Score=49.65 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=23.5
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
++....-|+|+|++|+|||||++.|...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4456677889999999999999999754
No 454
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.05 E-value=0.014 Score=41.64 Aligned_cols=84 Identities=12% Similarity=0.003 Sum_probs=51.0
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHH
Q 027985 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKG 144 (216)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 144 (216)
.+.|+|+|+.... .....+..+|.+|++++... .++..+..+++.+.... .....+|+|+.+... ....+..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~---~~~~~~~ 135 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDM---VEGGDMV 135 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccc---cchhhHH
Confidence 6999999985432 23345678999999987764 45555656555555421 234678899998532 1222223
Q ss_pred HHHHHHhCCcEE
Q 027985 145 QELADEYGIKFF 156 (216)
Q Consensus 145 ~~~~~~~~~~~~ 156 (216)
+.+.+..+..++
T Consensus 136 ~~~~~~~~~~v~ 147 (179)
T cd02036 136 EDIEEILGVPLL 147 (179)
T ss_pred HHHHHHhCCCEE
Confidence 445555565543
No 455
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.05 E-value=0.00055 Score=46.32 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~ 39 (216)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999988764
No 456
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.00054 Score=51.13 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~ 39 (216)
|.|+|++|+|||||++.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999886644
No 457
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.04 E-value=0.00079 Score=49.69 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
....-|+|.|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467899999999999999998754
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.04 E-value=0.00065 Score=46.12 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTT 42 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~ 42 (216)
-.++|+|++|+||||++..+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999998776544
No 459
>PRK14530 adenylate kinase; Provisional
Probab=97.03 E-value=0.00059 Score=50.66 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027985 16 IKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~ 36 (216)
.+|+|+|+|||||||+.+.|.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 460
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.03 E-value=0.0006 Score=51.15 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
...++++|+|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999998754
No 461
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.01 E-value=0.00058 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 462
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.01 E-value=0.00061 Score=49.38 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.|+|+|++|+|||||++.|....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999996653
No 463
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.00 E-value=0.00067 Score=46.63 Aligned_cols=21 Identities=52% Similarity=0.830 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~ 38 (216)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 464
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.99 E-value=0.0053 Score=47.17 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=38.2
Q ss_pred EEEEEEEeCCCccccccccccccc--------cccEEEEEEECCChhhHHHHHH------HHHHHHHhcCCCCcEEEEEe
Q 027985 63 RIKLQIWDTAGQERFRTITTAYYR--------GAMGILLVYDVTDESSFNNIRN------WMRNIDQHAADNVNKILVGN 128 (216)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~------~~~~l~~~~~~~~p~ivv~n 128 (216)
++...+++|.|......+...|+. ..|++|-|+|+... ...+.+ |-+...+..-.. -+++|
T Consensus 145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~--~~~Lde~k~~g~i~EA~~QiA~AD---~II~N 219 (391)
T KOG2743|consen 145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHI--LKHLDEEKPDGLINEATRQIALAD---RIIMN 219 (391)
T ss_pred CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhH--HhhhcccCcccchHHHHHHHhhhh---eeeec
Confidence 367788899997665554444432 36889999998531 111111 112222222111 56789
Q ss_pred CCCCCC
Q 027985 129 KADMDE 134 (216)
Q Consensus 129 K~D~~~ 134 (216)
|.|+..
T Consensus 220 KtDli~ 225 (391)
T KOG2743|consen 220 KTDLVS 225 (391)
T ss_pred cccccC
Confidence 999965
No 465
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.98 E-value=0.00055 Score=48.84 Aligned_cols=24 Identities=42% Similarity=0.667 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.-++|.|++|+|||||++.|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999998877
No 466
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.98 E-value=0.00071 Score=44.12 Aligned_cols=21 Identities=43% Similarity=0.776 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027985 16 IKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~ 36 (216)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 347899999999999999976
No 467
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.97 E-value=0.00073 Score=46.59 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF 40 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~ 40 (216)
.|+|+|+.++|||||+..|++.-.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999876543
No 468
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.97 E-value=0.002 Score=46.07 Aligned_cols=44 Identities=27% Similarity=0.175 Sum_probs=27.0
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
|++++|+|+.++.+-.. ..+.+.+. ....+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999987532211 11122211 1122579999999999854
No 469
>PRK08233 hypothetical protein; Provisional
Probab=96.96 E-value=0.00082 Score=48.34 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.+-|+|.|.+|||||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367889999999999999998764
No 470
>PRK10646 ADP-binding protein; Provisional
Probab=96.94 E-value=0.0043 Score=43.23 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
-|++-|.-|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998654
No 471
>PRK14532 adenylate kinase; Provisional
Probab=96.94 E-value=0.00076 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
++|+++|+|||||||+.+.|..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 472
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.92 E-value=0.00078 Score=48.71 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027985 16 IKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~ 36 (216)
..|+|+|.+||||||+++.|.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999987
No 473
>PRK13949 shikimate kinase; Provisional
Probab=96.92 E-value=0.00087 Score=47.82 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
+|+|+|++|+||||+.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998754
No 474
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.91 E-value=0.001 Score=48.21 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.=|+|+|++|||||||++.|+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 458999999999999999998653
No 475
>PRK00625 shikimate kinase; Provisional
Probab=96.91 E-value=0.00086 Score=47.98 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
+|+++|.+||||||+.+.|..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 476
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.90 E-value=0.00085 Score=48.24 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-|+|+|++|||||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999998743
No 477
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.90 E-value=0.001 Score=49.85 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
+++|+|+|+|||||||+.+.|..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998853
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.89 E-value=0.00096 Score=48.38 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-.++|+|++|+|||||++.+++..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999988754
No 479
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.0021 Score=51.03 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=28.4
Q ss_pred EEEEEEEeCCCcccccccccc------ccccccEEEEEEECCChhhHHHHH
Q 027985 63 RIKLQIWDTAGQERFRTITTA------YYRGAMGILLVYDVTDESSFNNIR 107 (216)
Q Consensus 63 ~~~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~ 107 (216)
.+.+.|+||+|.+........ -.-.-|-+|+|.|++-.+.-+...
T Consensus 183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa 233 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA 233 (483)
T ss_pred CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHH
Confidence 378999999995433222111 123468899999998665544433
No 480
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.00077 Score=46.25 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHh
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~ 36 (216)
+...+|+|.|-||+|||||..++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 567899999999999999999985
No 481
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.87 E-value=0.0019 Score=43.33 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
--|++-|+-|+|||||++.+..
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~ 37 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLAR 37 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999864
No 482
>PRK02496 adk adenylate kinase; Provisional
Probab=96.86 E-value=0.0011 Score=47.97 Aligned_cols=22 Identities=23% Similarity=0.595 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
++|+|+|+|||||||+.+.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 483
>PRK14531 adenylate kinase; Provisional
Probab=96.85 E-value=0.001 Score=48.06 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
.+|+++|+|||||||+.+.|..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 484
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.85 E-value=0.00093 Score=48.90 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~ 39 (216)
|+|.|++|||||||++.|....
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999987653
No 485
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.85 E-value=0.0014 Score=46.68 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
..-+.|+|.+|||||||++++....
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHH
Confidence 3468899999999999999998654
No 486
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.82 E-value=0.001 Score=45.65 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.|+++|++|+|||+|++.+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999876433
No 487
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.81 E-value=0.0011 Score=47.80 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 027985 18 LLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~ 37 (216)
|+|+|+|||||||+.+.|..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998864
No 488
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.81 E-value=0.0012 Score=47.36 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027985 16 IKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~ 36 (216)
-.++|+|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999885
No 489
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.81 E-value=0.0039 Score=42.94 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
--|++-|+-|+|||||.+.+...-
T Consensus 26 ~Vv~L~GdLGAGKTtf~rgi~~~L 49 (149)
T COG0802 26 DVVLLSGDLGAGKTTLVRGIAKGL 49 (149)
T ss_pred CEEEEEcCCcCChHHHHHHHHHHc
Confidence 357899999999999999986443
No 490
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.79 E-value=0.0011 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998654
No 491
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.78 E-value=0.0013 Score=48.92 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998764
No 492
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.77 E-value=0.0014 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
..+.|+|.|.+|||||||.+.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998764
No 493
>PRK06547 hypothetical protein; Provisional
Probab=96.77 E-value=0.0016 Score=46.59 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
....+.|+|.|.+|||||||.+.|...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456788899999999999999998754
No 494
>PRK04195 replication factor C large subunit; Provisional
Probab=96.76 E-value=0.019 Score=48.09 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.-.++|.|++|+||||+++.+....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999997654
No 495
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.76 E-value=0.0012 Score=49.93 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~ 38 (216)
++++|+.|||||||++.+.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 579999999999999999763
No 496
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.76 E-value=0.0012 Score=52.00 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~ 39 (216)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999987643
No 497
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.76 E-value=0.0058 Score=44.78 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDSF 40 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~~ 40 (216)
|+|.|++||||||+++.+.....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999876543
No 498
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.75 E-value=0.0014 Score=48.43 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 499
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.75 E-value=0.0013 Score=45.54 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46899999999999999998764
No 500
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.74 E-value=0.0014 Score=48.60 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
Done!