Query 027985
Match_columns 216
No_of_seqs 151 out of 1950
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 06:41:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.4E-43 8.3E-48 260.3 18.2 171 11-182 9-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 1E-37 3.5E-42 229.3 24.5 173 11-184 4-176 (206)
3 1vg8_A RAS-related protein RAB 100.0 1.5E-36 5.3E-41 223.0 20.0 171 11-183 4-179 (207)
4 2bov_A RAla, RAS-related prote 100.0 4.3E-36 1.5E-40 220.4 22.2 182 1-185 1-183 (206)
5 2fu5_C RAS-related protein RAB 100.0 2.2E-35 7.6E-40 212.8 21.1 175 10-185 3-177 (183)
6 3cpj_B GTP-binding protein YPT 100.0 1E-35 3.5E-40 221.3 18.9 172 11-183 9-180 (223)
7 2gf9_A RAS-related protein RAB 100.0 1E-34 3.5E-39 210.5 23.6 177 4-181 11-187 (189)
8 3tw8_B RAS-related protein RAB 100.0 1.2E-34 4.3E-39 208.2 23.3 177 8-186 2-178 (181)
9 2ew1_A RAS-related protein RAB 100.0 9.8E-35 3.4E-39 212.6 21.9 173 9-182 20-192 (201)
10 2bme_A RAB4A, RAS-related prot 100.0 1.3E-34 4.5E-39 209.2 22.2 177 7-184 2-178 (186)
11 3tkl_A RAS-related protein RAB 100.0 2.1E-34 7.2E-39 209.8 23.1 174 9-183 10-183 (196)
12 2a5j_A RAS-related protein RAB 100.0 2.3E-34 7.8E-39 209.0 22.8 171 11-182 17-187 (191)
13 1zbd_A Rabphilin-3A; G protein 100.0 7.3E-34 2.5E-38 208.2 23.7 173 11-184 4-176 (203)
14 2oil_A CATX-8, RAS-related pro 100.0 4.2E-34 1.4E-38 207.8 21.7 174 8-182 18-191 (193)
15 2hup_A RAS-related protein RAB 100.0 1.8E-34 6E-39 211.3 19.6 170 11-181 25-195 (201)
16 1z0f_A RAB14, member RAS oncog 100.0 4.8E-34 1.6E-38 204.8 20.2 169 10-179 10-178 (179)
17 1g16_A RAS-related protein SEC 100.0 3.8E-34 1.3E-38 203.6 19.3 165 14-180 2-166 (170)
18 2o52_A RAS-related protein RAB 100.0 5.3E-34 1.8E-38 208.6 20.1 173 10-183 20-192 (200)
19 1z08_A RAS-related protein RAB 100.0 6.5E-34 2.2E-38 202.5 19.9 166 12-178 3-168 (170)
20 2efe_B Small GTP-binding prote 100.0 8.8E-34 3E-38 203.9 20.8 169 11-180 8-176 (181)
21 3cph_A RAS-related protein SEC 100.0 1.4E-33 4.6E-38 208.1 22.2 174 9-184 14-187 (213)
22 2g6b_A RAS-related protein RAB 100.0 2.3E-33 7.7E-38 201.6 22.7 170 10-180 5-175 (180)
23 2il1_A RAB12; G-protein, GDP, 100.0 2.9E-34 1E-38 208.7 17.8 172 7-179 18-190 (192)
24 3dz8_A RAS-related protein RAB 100.0 4.3E-35 1.5E-39 212.9 13.2 173 8-181 16-188 (191)
25 2f7s_A C25KG, RAS-related prot 100.0 3.9E-34 1.3E-38 211.8 18.3 176 9-185 19-205 (217)
26 3kkq_A RAS-related protein M-R 100.0 4.1E-33 1.4E-37 200.9 22.1 169 9-179 12-182 (183)
27 1ky3_A GTP-binding protein YPT 100.0 1.1E-33 3.9E-38 203.3 18.9 171 11-181 4-180 (182)
28 2j0v_A RAC-like GTP-binding pr 100.0 4.9E-34 1.7E-38 210.5 17.4 168 12-181 6-182 (212)
29 3bc1_A RAS-related protein RAB 100.0 3.9E-33 1.3E-37 202.5 21.9 174 11-185 7-191 (195)
30 4dsu_A GTPase KRAS, isoform 2B 100.0 7.5E-33 2.6E-37 200.3 22.9 170 13-185 2-172 (189)
31 2fn4_A P23, RAS-related protei 100.0 3.8E-33 1.3E-37 200.4 21.0 171 10-182 4-175 (181)
32 1ek0_A Protein (GTP-binding pr 100.0 2.7E-33 9.1E-38 199.2 19.9 164 14-177 2-167 (170)
33 2fg5_A RAB-22B, RAS-related pr 100.0 1.2E-33 4.1E-38 205.4 18.0 169 10-179 18-186 (192)
34 1z0j_A RAB-22, RAS-related pro 100.0 5.9E-33 2E-37 197.5 21.2 165 12-177 3-167 (170)
35 1r2q_A RAS-related protein RAB 100.0 2.9E-33 1E-37 198.9 19.6 164 13-177 4-167 (170)
36 1z2a_A RAS-related protein RAB 100.0 2E-33 7E-38 199.5 18.7 165 13-179 3-167 (168)
37 3t5g_A GTP-binding protein RHE 100.0 4.9E-33 1.7E-37 200.1 20.8 168 12-181 3-171 (181)
38 1z06_A RAS-related protein RAB 100.0 1.9E-33 6.4E-38 203.8 18.6 168 11-179 16-188 (189)
39 2y8e_A RAB-protein 6, GH09086P 100.0 2.5E-33 8.4E-38 201.1 18.8 167 11-178 10-176 (179)
40 3oes_A GTPase rhebl1; small GT 100.0 1.3E-33 4.4E-38 206.7 17.5 176 6-183 15-191 (201)
41 3ihw_A Centg3; RAS, centaurin, 100.0 7.6E-33 2.6E-37 199.9 21.3 165 10-181 15-182 (184)
42 1wms_A RAB-9, RAB9, RAS-relate 100.0 1E-32 3.5E-37 197.6 21.7 167 11-179 3-174 (177)
43 2gf0_A GTP-binding protein DI- 100.0 8.2E-34 2.8E-38 207.1 16.1 164 12-178 5-170 (199)
44 1x3s_A RAS-related protein RAB 100.0 5.7E-33 1.9E-37 202.0 20.4 172 7-180 7-179 (195)
45 2p5s_A RAS and EF-hand domain 100.0 1.2E-33 4.1E-38 206.5 16.5 168 11-178 24-196 (199)
46 3q3j_B RHO-related GTP-binding 100.0 3.6E-33 1.2E-37 206.3 18.9 171 10-182 22-206 (214)
47 3reg_A RHO-like small GTPase; 100.0 1.1E-32 3.7E-37 200.6 21.0 169 9-179 17-188 (194)
48 3q85_A GTP-binding protein REM 100.0 6.3E-33 2.2E-37 197.3 18.8 164 15-179 2-167 (169)
49 2hxs_A RAB-26, RAS-related pro 100.0 1.7E-33 5.9E-38 201.9 15.6 167 12-179 3-173 (178)
50 2q3h_A RAS homolog gene family 100.0 2E-32 6.7E-37 200.3 21.5 171 10-182 15-198 (201)
51 2nzj_A GTP-binding protein REM 100.0 1.8E-32 6E-37 196.0 20.5 168 13-182 2-172 (175)
52 3cbq_A GTP-binding protein REM 100.0 4.2E-33 1.4E-37 203.1 17.5 168 11-179 19-188 (195)
53 3clv_A RAB5 protein, putative; 100.0 3.7E-32 1.3E-36 199.0 22.2 167 11-181 3-206 (208)
54 1gwn_A RHO-related GTP-binding 100.0 7.4E-33 2.5E-37 203.3 18.4 174 4-179 17-204 (205)
55 3c5c_A RAS-like protein 12; GD 100.0 1.4E-32 4.7E-37 199.0 18.7 165 11-178 17-185 (187)
56 2a9k_A RAS-related protein RAL 100.0 3.5E-32 1.2E-36 196.3 20.5 171 10-182 13-184 (187)
57 2iwr_A Centaurin gamma 1; ANK 100.0 5E-32 1.7E-36 194.3 21.0 165 13-184 5-174 (178)
58 2atx_A Small GTP binding prote 100.0 5.7E-32 2E-36 196.7 21.0 165 12-178 15-192 (194)
59 2g3y_A GTP-binding protein GEM 100.0 3.1E-32 1E-36 200.4 19.7 171 8-180 30-204 (211)
60 2yc2_C IFT27, small RAB-relate 100.0 5E-33 1.7E-37 204.2 15.3 172 13-184 18-197 (208)
61 3q72_A GTP-binding protein RAD 100.0 6.4E-32 2.2E-36 191.5 20.0 163 15-180 2-165 (166)
62 1u8z_A RAS-related protein RAL 100.0 4.2E-32 1.4E-36 192.5 19.0 163 14-178 3-166 (168)
63 3con_A GTPase NRAS; structural 100.0 2.3E-31 8E-36 192.8 23.1 168 11-181 17-185 (190)
64 1kao_A RAP2A; GTP-binding prot 100.0 5.2E-32 1.8E-36 191.8 18.8 164 14-179 2-166 (167)
65 1c1y_A RAS-related protein RAP 100.0 6.4E-32 2.2E-36 191.6 19.0 162 14-177 2-165 (167)
66 2atv_A RERG, RAS-like estrogen 100.0 1E-31 3.5E-36 195.8 19.9 167 12-181 25-193 (196)
67 4djt_A GTP-binding nuclear pro 100.0 1.9E-32 6.6E-37 202.8 16.1 173 10-183 6-179 (218)
68 1m7b_A RND3/RHOE small GTP-bin 100.0 7.9E-32 2.7E-36 194.5 18.7 165 12-178 4-182 (184)
69 2gco_A H9, RHO-related GTP-bin 100.0 2.6E-31 8.8E-36 194.4 21.1 165 12-178 22-199 (201)
70 1mh1_A RAC1; GTP-binding, GTPa 100.0 3E-31 1E-35 191.4 20.8 164 13-178 3-179 (186)
71 3l0i_B RAS-related protein RAB 100.0 2.4E-34 8.2E-39 210.2 4.2 167 11-178 29-195 (199)
72 2j1l_A RHO-related GTP-binding 100.0 1.5E-31 5.1E-36 197.6 19.2 167 13-181 32-211 (214)
73 2ce2_X GTPase HRAS; signaling 100.0 6.7E-31 2.3E-35 185.8 20.8 161 15-178 3-164 (166)
74 4bas_A ADP-ribosylation factor 100.0 2E-31 7E-36 194.4 17.5 172 5-183 7-193 (199)
75 2fv8_A H6, RHO-related GTP-bin 100.0 4.4E-31 1.5E-35 194.0 18.9 165 13-179 23-200 (207)
76 3t1o_A Gliding protein MGLA; G 100.0 1.3E-31 4.3E-36 195.1 14.4 168 10-182 9-195 (198)
77 2erx_A GTP-binding protein DI- 100.0 5.4E-31 1.9E-35 187.5 17.3 162 14-177 2-165 (172)
78 3gj0_A GTP-binding nuclear pro 100.0 1.5E-31 5.2E-36 198.4 14.5 168 9-180 9-176 (221)
79 3bwd_D RAC-like GTP-binding pr 100.0 1.1E-31 3.6E-36 193.2 12.6 164 13-178 6-180 (182)
80 2cjw_A GTP-binding protein GEM 100.0 3.5E-30 1.2E-34 187.2 20.4 167 13-181 4-174 (192)
81 4gzl_A RAS-related C3 botulinu 100.0 9.5E-31 3.2E-35 191.9 17.3 164 12-177 27-203 (204)
82 2f9l_A RAB11B, member RAS onco 100.0 1.3E-29 4.5E-34 185.1 22.3 169 13-182 3-171 (199)
83 2h57_A ADP-ribosylation factor 100.0 4.3E-30 1.5E-34 186.3 17.2 162 11-179 17-187 (190)
84 1upt_A ARL1, ADP-ribosylation 100.0 3.9E-30 1.3E-34 183.1 13.7 158 14-179 6-169 (171)
85 1zd9_A ADP-ribosylation factor 100.0 1.1E-29 3.7E-34 183.9 16.2 162 11-179 18-185 (188)
86 2h17_A ADP-ribosylation factor 100.0 6.2E-30 2.1E-34 184.1 13.9 158 11-176 17-180 (181)
87 1ksh_A ARF-like protein 2; sma 100.0 5.5E-29 1.9E-33 179.7 18.3 160 13-180 16-181 (186)
88 1oix_A RAS-related protein RAB 100.0 1.7E-28 5.9E-33 178.1 21.0 167 10-177 24-190 (191)
89 1f6b_A SAR1; gtpases, N-termin 100.0 1.4E-29 5E-34 184.7 14.7 155 14-176 24-196 (198)
90 1r8s_A ADP-ribosylation factor 100.0 1.9E-30 6.4E-35 183.6 9.2 156 16-179 1-162 (164)
91 1m2o_B GTP-binding protein SAR 100.0 4E-29 1.4E-33 181.3 16.4 155 14-176 22-189 (190)
92 1zj6_A ADP-ribosylation factor 100.0 2.5E-29 8.7E-34 181.7 14.5 159 13-179 14-178 (187)
93 1moz_A ARL1, ADP-ribosylation 100.0 2.8E-29 9.7E-34 180.7 14.7 161 13-181 16-182 (183)
94 3llu_A RAS-related GTP-binding 100.0 8.3E-30 2.9E-34 185.7 10.8 169 6-177 11-195 (196)
95 2wkq_A NPH1-1, RAS-related C3 100.0 3.6E-28 1.2E-32 190.5 20.4 164 13-178 153-329 (332)
96 2b6h_A ADP-ribosylation factor 100.0 5.7E-30 2E-34 186.0 9.3 159 12-178 26-190 (192)
97 1fzq_A ADP-ribosylation factor 100.0 1.3E-28 4.3E-33 177.3 15.8 160 12-179 13-178 (181)
98 2x77_A ADP-ribosylation factor 100.0 1.4E-29 4.7E-34 183.4 10.4 160 13-180 20-185 (189)
99 3th5_A RAS-related C3 botulinu 99.9 3.1E-31 1E-35 194.4 0.0 164 12-177 27-203 (204)
100 2zej_A Dardarin, leucine-rich 100.0 1.7E-29 5.9E-34 182.3 8.0 163 15-179 2-178 (184)
101 2qu8_A Putative nucleolar GTP- 100.0 1.2E-27 3.9E-32 178.3 17.0 168 12-183 26-209 (228)
102 3c5h_A Glucocorticoid receptor 100.0 3E-29 1E-33 189.8 8.4 172 4-178 8-254 (255)
103 2lkc_A Translation initiation 100.0 4.9E-28 1.7E-32 173.4 14.3 161 12-182 5-174 (178)
104 2wji_A Ferrous iron transport 100.0 6.2E-28 2.1E-32 171.1 13.9 154 14-177 2-163 (165)
105 2fh5_B SR-beta, signal recogni 100.0 3.1E-28 1.1E-32 179.6 10.8 162 12-176 4-213 (214)
106 3o47_A ADP-ribosylation factor 99.9 4.4E-28 1.5E-32 189.6 9.2 159 13-179 163-327 (329)
107 3r7w_A Gtpase1, GTP-binding pr 99.9 6.2E-27 2.1E-31 181.5 12.7 162 14-177 2-179 (307)
108 3lvq_E ARF-GAP with SH3 domain 99.9 5.4E-26 1.9E-30 187.3 18.3 164 12-183 319-488 (497)
109 2wjg_A FEOB, ferrous iron tran 99.9 1.1E-26 3.8E-31 167.8 12.5 158 13-180 5-170 (188)
110 2gj8_A MNME, tRNA modification 99.9 4.8E-27 1.6E-31 167.7 10.3 154 14-178 3-165 (172)
111 2cxx_A Probable GTP-binding pr 99.9 3.8E-27 1.3E-31 170.4 9.8 156 16-181 2-186 (190)
112 3a1s_A Iron(II) transport prot 99.9 2.1E-26 7.2E-31 174.2 14.0 157 12-178 2-166 (258)
113 2dyk_A GTP-binding protein; GT 99.9 2.4E-26 8.2E-31 161.8 11.9 150 16-177 2-160 (161)
114 1svi_A GTP-binding protein YSX 99.9 9.4E-27 3.2E-31 169.1 10.0 159 11-177 19-193 (195)
115 3iby_A Ferrous iron transport 99.9 1.6E-26 5.6E-31 174.6 9.0 151 16-176 2-164 (256)
116 3iev_A GTP-binding protein ERA 99.9 3.6E-25 1.2E-29 171.6 16.5 162 11-178 6-181 (308)
117 3pqc_A Probable GTP-binding pr 99.9 4.4E-26 1.5E-30 165.4 10.5 160 10-179 18-194 (195)
118 3i8s_A Ferrous iron transport 99.9 2.7E-26 9.2E-31 175.2 8.0 155 14-178 2-168 (274)
119 3dpu_A RAB family protein; roc 99.9 2.6E-26 8.8E-31 190.6 8.2 164 11-179 37-208 (535)
120 3b1v_A Ferrous iron uptake tra 99.9 6.4E-26 2.2E-30 172.6 9.1 153 14-177 2-162 (272)
121 3r7w_B Gtpase2, GTP-binding pr 99.9 6.4E-27 2.2E-31 180.2 3.6 158 17-181 1-176 (331)
122 3k53_A Ferrous iron transport 99.9 4.3E-25 1.5E-29 168.5 13.1 156 14-178 2-165 (271)
123 3gee_A MNME, tRNA modification 99.9 6.5E-24 2.2E-28 172.7 15.3 157 14-178 232-397 (476)
124 2hjg_A GTP-binding protein ENG 99.9 1.3E-24 4.5E-29 176.1 10.7 162 12-180 172-350 (436)
125 4dhe_A Probable GTP-binding pr 99.9 4.5E-25 1.5E-29 163.6 7.4 165 11-180 25-212 (223)
126 2e87_A Hypothetical protein PH 99.9 2.1E-23 7E-28 165.0 17.3 164 13-182 165-339 (357)
127 1wf3_A GTP-binding protein; GT 99.9 7.6E-24 2.6E-28 163.5 10.6 155 13-177 5-171 (301)
128 1nrj_B SR-beta, signal recogni 99.9 1.1E-24 3.7E-29 161.1 5.5 144 12-165 9-170 (218)
129 4dcu_A GTP-binding protein ENG 99.9 1.1E-23 3.7E-28 171.6 11.9 163 12-181 192-371 (456)
130 1lnz_A SPO0B-associated GTP-bi 99.9 2.8E-24 9.6E-29 168.1 8.0 157 16-178 159-329 (342)
131 1wb1_A Translation elongation 99.9 1.8E-23 6.1E-28 170.9 13.0 164 6-178 10-188 (482)
132 3qq5_A Small GTP-binding prote 99.9 1.2E-24 3.9E-29 174.5 5.6 157 12-178 31-195 (423)
133 2qtf_A Protein HFLX, GTP-bindi 99.9 9.8E-23 3.4E-27 160.9 15.5 164 14-180 178-355 (364)
134 1xzp_A Probable tRNA modificat 99.9 2.4E-23 8.4E-28 169.5 12.0 153 15-179 243-405 (482)
135 3sjy_A Translation initiation 99.9 4.6E-22 1.6E-26 159.6 16.2 165 11-178 4-191 (403)
136 1mky_A Probable GTP-binding pr 99.9 1.4E-22 4.8E-27 164.3 12.8 151 16-179 2-166 (439)
137 1s0u_A EIF-2-gamma, translatio 99.9 4.7E-22 1.6E-26 159.8 15.4 161 12-178 5-197 (408)
138 3j2k_7 ERF3, eukaryotic polype 99.9 2E-22 6.7E-27 163.2 12.9 156 11-171 13-217 (439)
139 1kk1_A EIF2gamma; initiation o 99.9 2.8E-22 9.5E-27 161.3 12.6 164 9-178 4-199 (410)
140 3cb4_D GTP-binding protein LEP 99.9 3.9E-22 1.3E-26 166.0 13.5 158 14-178 3-181 (599)
141 1cip_A Protein (guanine nucleo 99.9 2.3E-22 7.8E-27 157.9 11.4 128 52-181 183-346 (353)
142 3geh_A MNME, tRNA modification 99.9 1E-22 3.4E-27 165.2 9.2 152 14-178 223-383 (462)
143 2xtp_A GTPase IMAP family memb 99.9 4.5E-22 1.6E-26 150.9 12.1 164 12-180 19-209 (260)
144 2ywe_A GTP-binding protein LEP 99.9 8.4E-22 2.9E-26 163.7 13.4 159 13-178 4-183 (600)
145 3izy_P Translation initiation 99.9 5.1E-24 1.7E-28 174.9 -0.5 159 15-178 4-167 (537)
146 3lxx_A GTPase IMAP family memb 99.9 5.9E-21 2E-25 143.0 16.1 164 11-179 25-214 (239)
147 1mky_A Probable GTP-binding pr 99.9 2.9E-21 9.8E-26 156.6 15.4 161 13-180 178-356 (439)
148 1ega_A Protein (GTP-binding pr 99.9 1.4E-21 4.9E-26 150.9 13.0 156 14-177 7-173 (301)
149 3lxw_A GTPase IMAP family memb 99.9 2.5E-21 8.7E-26 145.6 13.2 165 12-180 18-209 (247)
150 3t5d_A Septin-7; GTP-binding p 99.9 1.3E-22 4.4E-27 155.0 5.7 162 12-177 5-202 (274)
151 2hjg_A GTP-binding protein ENG 99.9 1.9E-22 6.5E-27 163.4 6.3 152 15-178 3-164 (436)
152 1zcb_A G alpha I/13; GTP-bindi 99.9 3.1E-21 1E-25 152.0 12.4 128 53-182 192-356 (362)
153 3p26_A Elongation factor 1 alp 99.9 1.7E-21 5.9E-26 159.6 10.9 153 13-169 31-228 (483)
154 1zun_B Sulfate adenylate trans 99.9 1E-21 3.6E-26 159.0 9.2 155 12-171 21-216 (434)
155 2xtz_A Guanine nucleotide-bind 99.9 3.3E-21 1.1E-25 151.3 11.6 122 62-183 181-349 (354)
156 3ohm_A Guanine nucleotide-bind 99.8 6.8E-21 2.3E-25 147.5 11.9 128 52-181 157-320 (327)
157 2ged_A SR-beta, signal recogni 99.8 2.4E-21 8.3E-26 140.3 8.7 114 12-134 45-170 (193)
158 1jny_A EF-1-alpha, elongation 99.8 2.6E-22 8.8E-27 162.5 3.8 154 13-171 4-205 (435)
159 2c78_A Elongation factor TU-A; 99.8 1.3E-21 4.5E-26 157.1 7.7 148 12-165 8-180 (405)
160 3tr5_A RF-3, peptide chain rel 99.8 5.5E-21 1.9E-25 157.4 11.4 116 13-134 11-148 (528)
161 1d2e_A Elongation factor TU (E 99.8 5.2E-21 1.8E-25 153.2 10.8 157 15-177 3-193 (397)
162 2elf_A Protein translation elo 99.8 2.8E-21 9.7E-26 152.9 9.2 147 17-180 23-181 (370)
163 1r5b_A Eukaryotic peptide chai 99.8 2.8E-22 9.7E-27 163.4 3.3 156 13-170 41-243 (467)
164 1g7s_A Translation initiation 99.8 4.4E-20 1.5E-24 153.8 14.4 160 14-180 4-219 (594)
165 1zo1_I IF2, translation initia 99.8 1.7E-22 5.9E-27 164.6 -0.6 153 14-175 3-163 (501)
166 2qag_A Septin-2, protein NEDD5 99.8 1.5E-21 5.1E-26 154.3 4.7 162 12-180 34-234 (361)
167 1azs_C GS-alpha; complex (lyas 99.8 8.5E-20 2.9E-24 144.9 14.2 127 55-183 210-389 (402)
168 3izq_1 HBS1P, elongation facto 99.8 6E-21 2E-25 159.8 7.8 155 13-169 165-362 (611)
169 3mca_A HBS1, elongation factor 99.8 7E-22 2.4E-26 164.9 1.9 151 12-167 174-371 (592)
170 1f60_A Elongation factor EEF1A 99.8 2.5E-21 8.6E-26 157.5 4.1 153 13-170 5-203 (458)
171 4fid_A G protein alpha subunit 99.8 3.2E-19 1.1E-23 138.6 14.6 129 52-183 151-331 (340)
172 4dcu_A GTP-binding protein ENG 99.8 3.2E-21 1.1E-25 157.0 3.4 156 11-178 19-184 (456)
173 3avx_A Elongation factor TS, e 99.8 6.9E-20 2.4E-24 159.6 9.9 160 12-177 293-484 (1289)
174 2aka_B Dynamin-1; fusion prote 99.8 3E-20 1E-24 143.5 6.4 164 12-180 23-254 (299)
175 3def_A T7I23.11 protein; chlor 99.8 8.9E-19 3E-23 132.9 14.3 121 12-134 33-165 (262)
176 1udx_A The GTP-binding protein 99.8 5.6E-19 1.9E-23 141.2 11.3 159 17-180 159-326 (416)
177 1pui_A ENGB, probable GTP-bind 99.8 3.5E-19 1.2E-23 130.5 9.3 158 12-178 23-198 (210)
178 1dar_A EF-G, elongation factor 99.8 2.3E-18 8E-23 146.2 13.3 120 9-134 6-143 (691)
179 1h65_A Chloroplast outer envel 99.8 1.2E-17 4E-22 127.2 14.3 119 13-134 37-168 (270)
180 2h5e_A Peptide chain release f 99.8 1.3E-17 4.4E-22 137.5 15.2 116 13-134 11-148 (529)
181 1wxq_A GTP-binding protein; st 99.8 9.2E-19 3.1E-23 139.6 8.1 85 16-100 1-114 (397)
182 2j69_A Bacterial dynamin-like 99.8 3E-18 1E-22 145.6 11.7 164 13-179 67-325 (695)
183 2dy1_A Elongation factor G; tr 99.8 1.2E-17 4E-22 141.4 15.0 115 13-133 7-139 (665)
184 2xex_A Elongation factor G; GT 99.8 7.1E-18 2.4E-22 143.3 12.3 118 11-134 6-141 (693)
185 2rdo_7 EF-G, elongation factor 99.7 2.2E-17 7.4E-22 140.5 14.7 120 11-134 6-148 (704)
186 2qnr_A Septin-2, protein NEDD5 99.7 4.9E-19 1.7E-23 136.6 3.3 163 11-178 14-213 (301)
187 3t34_A Dynamin-related protein 99.7 1.1E-18 3.8E-23 138.1 5.2 155 14-172 33-254 (360)
188 1jwy_B Dynamin A GTPase domain 99.7 1.4E-17 5E-22 129.4 9.5 163 12-179 21-262 (315)
189 2qag_C Septin-7; cell cycle, c 99.7 2.4E-17 8.2E-22 131.9 9.4 162 11-177 27-225 (418)
190 1u0l_A Probable GTPase ENGC; p 99.7 5.7E-18 2E-22 130.8 4.9 133 30-174 32-168 (301)
191 1jal_A YCHF protein; nucleotid 99.7 7.9E-16 2.7E-20 120.6 13.4 146 16-162 3-240 (363)
192 3vqt_A RF-3, peptide chain rel 99.7 9.1E-16 3.1E-20 127.0 14.1 115 14-134 30-166 (548)
193 2wsm_A Hydrogenase expression/ 99.7 6.5E-17 2.2E-21 119.4 6.4 155 14-180 29-215 (221)
194 2x2e_A Dynamin-1; nitration, h 99.7 4.4E-18 1.5E-22 134.3 -0.7 158 14-176 30-255 (353)
195 3p32_A Probable GTPase RV1496/ 99.7 4.6E-17 1.6E-21 128.5 4.9 103 64-179 172-284 (355)
196 4a9a_A Ribosome-interacting GT 99.6 6.3E-15 2.1E-19 116.2 14.6 155 12-170 69-239 (376)
197 1n0u_A EF-2, elongation factor 99.6 4.8E-16 1.6E-20 134.6 9.0 120 11-134 15-164 (842)
198 2www_A Methylmalonic aciduria 99.6 3.7E-15 1.3E-19 117.2 13.1 103 64-179 167-279 (349)
199 2dby_A GTP-binding protein; GD 99.6 9E-16 3.1E-20 121.0 8.4 157 16-172 2-255 (368)
200 2hf9_A Probable hydrogenase ni 99.6 1.3E-17 4.5E-22 123.6 -3.1 154 14-179 37-224 (226)
201 2qpt_A EH domain-containing pr 99.6 5.5E-16 1.9E-20 128.5 6.0 121 11-134 61-232 (550)
202 2p67_A LAO/AO transport system 99.5 2.2E-15 7.5E-20 118.2 3.2 103 64-178 149-260 (341)
203 3j25_A Tetracycline resistance 99.5 1.7E-15 5.8E-20 127.7 2.3 113 16-134 3-133 (638)
204 4fn5_A EF-G 1, elongation fact 99.5 9.1E-14 3.1E-18 118.7 12.3 118 13-134 11-151 (709)
205 1yrb_A ATP(GTP)binding protein 99.5 1.1E-13 3.8E-18 104.6 11.3 111 64-178 109-256 (262)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 9.7E-15 3.3E-19 123.9 4.9 159 13-176 49-275 (772)
207 2qm8_A GTPase/ATPase; G protei 99.4 3.9E-13 1.3E-17 105.2 8.0 103 64-178 148-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.4 5.1E-13 1.8E-17 103.0 8.4 97 74-174 66-164 (302)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 4.2E-12 1.5E-16 100.7 12.2 86 14-99 19-127 (392)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 4.1E-13 1.4E-17 106.3 4.8 89 13-101 20-130 (396)
211 3l82_B F-box only protein 4; T 99.3 1.3E-12 4.6E-17 93.7 2.1 103 72-178 110-222 (227)
212 3l2o_B F-box only protein 4; s 99.1 4.2E-11 1.4E-15 90.1 4.2 104 71-178 194-307 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.1 5.8E-12 2E-16 99.7 -1.2 140 16-166 163-318 (369)
214 3h2y_A GTPase family protein; 99.0 9.9E-10 3.4E-14 86.9 7.7 96 73-176 55-157 (368)
215 3h2y_A GTPase family protein; 99.0 3.1E-11 1.1E-15 95.4 -2.2 135 16-161 161-312 (368)
216 2qag_B Septin-6, protein NEDD5 98.9 9.4E-10 3.2E-14 87.9 5.7 62 14-75 41-106 (427)
217 2j37_W Signal recognition part 98.9 4.4E-10 1.5E-14 91.9 3.8 150 13-176 99-310 (504)
218 1tq4_A IIGP1, interferon-induc 98.9 1.9E-08 6.5E-13 80.3 10.9 160 15-183 69-257 (413)
219 3ec1_A YQEH GTPase; atnos1, at 98.8 4.1E-09 1.4E-13 83.4 5.7 97 73-177 57-160 (369)
220 1puj_A YLQF, conserved hypothe 98.8 4.9E-09 1.7E-13 79.9 5.6 103 68-181 3-108 (282)
221 3sop_A Neuronal-specific septi 98.8 2.7E-08 9.2E-13 75.3 9.0 24 15-38 2-25 (270)
222 1puj_A YLQF, conserved hypothe 98.7 2.2E-08 7.7E-13 76.2 5.2 58 13-75 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.5 3.9E-08 1.3E-12 74.1 2.6 56 16-76 100-156 (262)
224 3dm5_A SRP54, signal recogniti 98.5 2.7E-07 9.3E-12 74.1 7.3 90 64-166 183-278 (443)
225 2v3c_C SRP54, signal recogniti 98.4 7.8E-07 2.7E-11 71.6 7.0 83 64-158 181-271 (432)
226 1f5n_A Interferon-induced guan 98.3 3.3E-07 1.1E-11 76.3 4.0 65 12-76 35-103 (592)
227 3cnl_A YLQF, putative uncharac 98.3 1.8E-07 6.1E-12 70.5 1.9 93 71-175 4-97 (262)
228 3kl4_A SRP54, signal recogniti 98.2 3.7E-07 1.3E-11 73.3 1.7 90 64-166 180-277 (433)
229 1t9h_A YLOQ, probable GTPase E 98.2 5.8E-07 2E-11 69.0 2.3 90 79-171 78-169 (307)
230 2rcn_A Probable GTPase ENGC; Y 98.2 4.3E-06 1.5E-10 65.5 7.2 86 84-173 127-213 (358)
231 1j8m_F SRP54, signal recogniti 98.1 7E-06 2.4E-10 62.9 6.8 92 64-169 181-281 (297)
232 3szr_A Interferon-induced GTP- 98.0 1.2E-05 4E-10 67.7 7.4 23 17-39 47-69 (608)
233 3e70_C DPA, signal recognition 97.9 2.1E-05 7E-10 61.1 5.8 92 65-169 213-310 (328)
234 1bif_A 6-phosphofructo-2-kinas 97.9 6.6E-07 2.2E-11 73.1 -3.0 110 14-128 38-157 (469)
235 3q5d_A Atlastin-1; G protein, 97.8 1.9E-05 6.4E-10 63.7 4.5 27 12-38 64-90 (447)
236 3ney_A 55 kDa erythrocyte memb 97.5 5.8E-05 2E-09 54.1 3.4 35 4-38 8-42 (197)
237 1ye8_A Protein THEP1, hypothet 97.5 6.5E-05 2.2E-09 53.1 3.1 23 16-38 1-23 (178)
238 1kgd_A CASK, peripheral plasma 97.3 0.00011 3.9E-09 51.8 2.9 22 17-38 7-28 (180)
239 2xxa_A Signal recognition part 97.3 0.0011 3.9E-08 53.3 8.5 83 64-158 184-273 (433)
240 1lvg_A Guanylate kinase, GMP k 97.3 0.00014 4.9E-09 52.1 2.9 21 17-37 6-26 (198)
241 1t9h_A YLOQ, probable GTPase E 97.2 0.0001 3.4E-09 56.6 1.8 24 16-39 174-197 (307)
242 1zp6_A Hypothetical protein AT 97.2 0.00018 6.2E-09 51.0 2.9 23 16-38 10-32 (191)
243 3a00_A Guanylate kinase, GMP k 97.2 0.0002 6.8E-09 50.8 2.8 21 18-38 4-24 (186)
244 3tr0_A Guanylate kinase, GMP k 97.2 0.00021 7.1E-09 51.3 2.9 22 17-38 9-30 (205)
245 1znw_A Guanylate kinase, GMP k 97.1 0.00024 8.2E-09 51.3 2.9 23 17-39 22-44 (207)
246 1s96_A Guanylate kinase, GMP k 97.1 0.00025 8.6E-09 51.7 2.9 23 17-39 18-40 (219)
247 4gp7_A Metallophosphoesterase; 97.1 0.00024 8.4E-09 49.6 2.7 20 17-36 11-30 (171)
248 1z6g_A Guanylate kinase; struc 97.1 0.00028 9.5E-09 51.5 2.9 23 17-39 25-47 (218)
249 1ukz_A Uridylate kinase; trans 97.1 0.00044 1.5E-08 49.6 3.9 26 12-37 12-37 (203)
250 1knq_A Gluconate kinase; ALFA/ 97.1 0.00043 1.5E-08 48.4 3.7 22 16-37 9-30 (175)
251 2yv5_A YJEQ protein; hydrolase 97.1 0.00086 2.9E-08 51.4 5.6 20 17-36 167-186 (302)
252 3c8u_A Fructokinase; YP_612366 97.0 0.00037 1.3E-08 50.3 3.3 26 13-38 20-45 (208)
253 1ex7_A Guanylate kinase; subst 97.0 0.00036 1.2E-08 49.5 3.1 21 18-38 4-24 (186)
254 3tau_A Guanylate kinase, GMP k 97.0 0.00035 1.2E-08 50.5 3.0 23 17-39 10-32 (208)
255 1htw_A HI0065; nucleotide-bind 97.0 0.00038 1.3E-08 48.1 2.9 23 17-39 35-57 (158)
256 2qor_A Guanylate kinase; phosp 97.0 0.00039 1.3E-08 50.0 3.1 23 16-38 13-35 (204)
257 1kag_A SKI, shikimate kinase I 97.0 0.00041 1.4E-08 48.3 2.9 23 16-38 5-27 (173)
258 3tif_A Uncharacterized ABC tra 97.0 0.00039 1.3E-08 51.3 2.9 23 17-39 33-55 (235)
259 3lw7_A Adenylate kinase relate 97.0 0.00045 1.5E-08 48.0 3.1 20 16-35 2-21 (179)
260 2bdt_A BH3686; alpha-beta prot 97.0 0.00041 1.4E-08 49.2 2.9 21 17-37 4-24 (189)
261 1ly1_A Polynucleotide kinase; 97.0 0.00051 1.8E-08 48.0 3.4 22 16-37 3-24 (181)
262 3fb4_A Adenylate kinase; psych 97.0 0.00045 1.5E-08 50.1 3.1 21 16-36 1-21 (216)
263 2j41_A Guanylate kinase; GMP, 96.9 0.00043 1.5E-08 49.6 2.9 24 16-39 7-30 (207)
264 3kb2_A SPBC2 prophage-derived 96.9 0.00045 1.5E-08 48.0 2.9 21 17-37 3-23 (173)
265 2rcn_A Probable GTPase ENGC; Y 96.9 0.0005 1.7E-08 53.8 3.3 24 17-40 217-240 (358)
266 3dl0_A Adenylate kinase; phosp 96.9 0.00049 1.7E-08 49.9 3.1 22 16-37 1-22 (216)
267 4eun_A Thermoresistant glucoki 96.9 0.00049 1.7E-08 49.3 2.9 22 16-37 30-51 (200)
268 2pcj_A ABC transporter, lipopr 96.9 0.00046 1.6E-08 50.5 2.8 23 17-39 32-54 (224)
269 2bbw_A Adenylate kinase 4, AK4 96.9 0.0006 2.1E-08 50.5 3.3 22 15-36 27-48 (246)
270 2onk_A Molybdate/tungstate ABC 96.9 0.00056 1.9E-08 50.6 3.1 23 17-39 26-48 (240)
271 2wwf_A Thymidilate kinase, put 96.9 0.00073 2.5E-08 48.7 3.6 23 15-37 10-32 (212)
272 1sgw_A Putative ABC transporte 96.9 0.00057 1.9E-08 49.7 3.0 23 17-39 37-59 (214)
273 1y63_A LMAJ004144AAA protein; 96.9 0.00072 2.5E-08 47.8 3.4 24 15-38 10-33 (184)
274 3sr0_A Adenylate kinase; phosp 96.9 0.00066 2.2E-08 49.0 3.2 22 16-37 1-22 (206)
275 1qhx_A CPT, protein (chloramph 96.9 0.0007 2.4E-08 47.3 3.3 23 16-38 4-26 (178)
276 1b0u_A Histidine permease; ABC 96.8 0.0006 2E-08 51.2 3.0 23 17-39 34-56 (262)
277 3gfo_A Cobalt import ATP-bindi 96.8 0.0006 2E-08 51.5 3.0 23 17-39 36-58 (275)
278 2cbz_A Multidrug resistance-as 96.8 0.0006 2.1E-08 50.4 2.9 23 17-39 33-55 (237)
279 3ec2_A DNA replication protein 96.8 0.0005 1.7E-08 48.3 2.4 23 16-38 39-61 (180)
280 1kht_A Adenylate kinase; phosp 96.8 0.0007 2.4E-08 47.8 3.1 22 16-37 4-25 (192)
281 3asz_A Uridine kinase; cytidin 96.8 0.00069 2.4E-08 48.8 3.2 23 15-37 6-28 (211)
282 3cm0_A Adenylate kinase; ATP-b 96.8 0.00085 2.9E-08 47.3 3.6 23 15-37 4-26 (186)
283 2i3b_A HCR-ntpase, human cance 96.8 0.00062 2.1E-08 48.5 2.7 22 17-38 3-24 (189)
284 3co5_A Putative two-component 96.8 0.0015 5E-08 44.2 4.5 23 16-38 28-50 (143)
285 3t61_A Gluconokinase; PSI-biol 96.8 0.00065 2.2E-08 48.7 2.9 22 16-37 19-40 (202)
286 1nks_A Adenylate kinase; therm 96.8 0.00076 2.6E-08 47.7 3.2 22 16-37 2-23 (194)
287 2eyu_A Twitching motility prot 96.8 0.00065 2.2E-08 50.9 2.9 22 17-38 27-48 (261)
288 2jaq_A Deoxyguanosine kinase; 96.8 0.00073 2.5E-08 48.3 3.1 21 17-37 2-22 (205)
289 1g6h_A High-affinity branched- 96.8 0.00065 2.2E-08 50.8 2.9 23 17-39 35-57 (257)
290 4g1u_C Hemin import ATP-bindin 96.8 0.00067 2.3E-08 51.0 3.0 23 17-39 39-61 (266)
291 1tev_A UMP-CMP kinase; ploop, 96.8 0.00085 2.9E-08 47.5 3.4 23 15-37 3-25 (196)
292 1mv5_A LMRA, multidrug resista 96.8 0.00077 2.6E-08 50.0 3.2 23 17-39 30-52 (243)
293 2olj_A Amino acid ABC transpor 96.8 0.00069 2.4E-08 50.8 3.0 23 17-39 52-74 (263)
294 2pze_A Cystic fibrosis transme 96.8 0.00072 2.5E-08 49.7 3.0 23 17-39 36-58 (229)
295 2ff7_A Alpha-hemolysin translo 96.8 0.00078 2.7E-08 50.1 3.2 23 17-39 37-59 (247)
296 1vpl_A ABC transporter, ATP-bi 96.8 0.00072 2.5E-08 50.5 3.0 23 17-39 43-65 (256)
297 1np6_A Molybdopterin-guanine d 96.8 0.00077 2.6E-08 47.3 2.9 23 16-38 7-29 (174)
298 3vaa_A Shikimate kinase, SK; s 96.8 0.00083 2.8E-08 48.1 3.2 22 16-37 26-47 (199)
299 2if2_A Dephospho-COA kinase; a 96.8 0.00074 2.5E-08 48.4 2.9 22 16-37 2-23 (204)
300 1ji0_A ABC transporter; ATP bi 96.8 0.00074 2.5E-08 50.0 2.9 23 17-39 34-56 (240)
301 1e4v_A Adenylate kinase; trans 96.8 0.00074 2.5E-08 48.9 2.9 22 16-37 1-22 (214)
302 2v9p_A Replication protein E1; 96.8 0.00077 2.6E-08 51.6 3.1 22 17-38 128-149 (305)
303 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00079 2.7E-08 50.1 3.0 22 17-38 31-52 (250)
304 2cdn_A Adenylate kinase; phosp 96.8 0.001 3.4E-08 47.6 3.5 25 13-37 18-42 (201)
305 2plr_A DTMP kinase, probable t 96.8 0.001 3.4E-08 47.9 3.5 23 15-37 4-26 (213)
306 1uf9_A TT1252 protein; P-loop, 96.8 0.00094 3.2E-08 47.7 3.3 27 12-38 5-31 (203)
307 2qi9_C Vitamin B12 import ATP- 96.8 0.0008 2.7E-08 50.1 3.0 23 17-39 28-50 (249)
308 3uie_A Adenylyl-sulfate kinase 96.7 0.00079 2.7E-08 48.2 2.9 24 15-38 25-48 (200)
309 2rhm_A Putative kinase; P-loop 96.7 0.00097 3.3E-08 47.2 3.3 23 15-37 5-27 (193)
310 2zu0_C Probable ATP-dependent 96.7 0.00085 2.9E-08 50.5 3.1 22 17-38 48-69 (267)
311 3b85_A Phosphate starvation-in 96.7 0.00059 2E-08 49.4 2.1 22 17-38 24-45 (208)
312 2ixe_A Antigen peptide transpo 96.7 0.00082 2.8E-08 50.7 2.9 23 17-39 47-69 (271)
313 2ghi_A Transport protein; mult 96.7 0.00091 3.1E-08 50.1 3.2 23 17-39 48-70 (260)
314 3tlx_A Adenylate kinase 2; str 96.7 0.0011 3.7E-08 49.2 3.5 24 14-37 28-51 (243)
315 1jjv_A Dephospho-COA kinase; P 96.7 0.0011 3.7E-08 47.6 3.5 22 16-37 3-24 (206)
316 1cke_A CK, MSSA, protein (cyti 96.7 0.0009 3.1E-08 48.8 3.1 22 16-37 6-27 (227)
317 1u0l_A Probable GTPase ENGC; p 96.7 0.001 3.5E-08 51.0 3.5 24 17-40 171-194 (301)
318 2ihy_A ABC transporter, ATP-bi 96.7 0.00094 3.2E-08 50.6 3.2 23 17-39 49-71 (279)
319 2pt5_A Shikimate kinase, SK; a 96.7 0.00099 3.4E-08 46.1 3.1 22 16-37 1-22 (168)
320 2ehv_A Hypothetical protein PH 96.7 0.00092 3.1E-08 49.4 3.1 20 17-36 32-51 (251)
321 1aky_A Adenylate kinase; ATP:A 96.7 0.001 3.5E-08 48.3 3.1 22 16-37 5-26 (220)
322 2nq2_C Hypothetical ABC transp 96.7 0.00093 3.2E-08 49.9 2.9 23 17-39 33-55 (253)
323 2yz2_A Putative ABC transporte 96.7 0.00095 3.2E-08 50.2 2.9 23 17-39 35-57 (266)
324 2vp4_A Deoxynucleoside kinase; 96.7 0.0012 4.1E-08 48.4 3.4 26 13-38 18-43 (230)
325 3aez_A Pantothenate kinase; tr 96.7 0.00095 3.2E-08 51.4 2.9 26 13-38 88-113 (312)
326 3lnc_A Guanylate kinase, GMP k 96.7 0.00061 2.1E-08 50.0 1.8 22 17-38 29-51 (231)
327 4a74_A DNA repair and recombin 96.7 0.0009 3.1E-08 48.8 2.7 22 17-38 27-48 (231)
328 3trf_A Shikimate kinase, SK; a 96.7 0.0011 3.9E-08 46.6 3.1 22 16-37 6-27 (185)
329 2yvu_A Probable adenylyl-sulfa 96.6 0.0017 5.8E-08 45.8 4.0 25 14-38 12-36 (186)
330 3iij_A Coilin-interacting nucl 96.6 0.0012 4.1E-08 46.3 3.2 22 15-36 11-32 (180)
331 2pjz_A Hypothetical protein ST 96.6 0.0012 4.1E-08 49.5 3.2 23 17-39 32-54 (263)
332 1gvn_B Zeta; postsegregational 96.6 0.0014 4.8E-08 49.8 3.6 24 14-37 32-55 (287)
333 2xb4_A Adenylate kinase; ATP-b 96.6 0.0013 4.3E-08 48.1 3.1 22 16-37 1-22 (223)
334 2f1r_A Molybdopterin-guanine d 96.6 0.00061 2.1E-08 47.7 1.4 22 17-38 4-25 (171)
335 1via_A Shikimate kinase; struc 96.6 0.0012 4E-08 46.2 2.8 21 17-37 6-26 (175)
336 1lw7_A Transcriptional regulat 96.6 0.0011 3.9E-08 52.1 2.9 24 15-38 170-193 (365)
337 1zd8_A GTP:AMP phosphotransfer 96.6 0.0012 4.3E-08 48.2 3.0 21 16-36 8-28 (227)
338 2x8a_A Nuclear valosin-contain 96.6 0.0012 4.1E-08 49.8 2.9 21 18-38 47-67 (274)
339 1qf9_A UMP/CMP kinase, protein 96.6 0.0018 6.3E-08 45.7 3.7 22 16-37 7-28 (194)
340 2qt1_A Nicotinamide riboside k 96.6 0.0019 6.4E-08 46.4 3.8 24 15-38 21-44 (207)
341 2kjq_A DNAA-related protein; s 96.6 0.00083 2.8E-08 45.9 1.8 23 17-39 38-60 (149)
342 3jvv_A Twitching mobility prot 96.6 0.0012 4.1E-08 51.8 2.9 22 17-38 125-146 (356)
343 2v54_A DTMP kinase, thymidylat 96.5 0.0016 5.3E-08 46.6 3.3 24 15-38 4-27 (204)
344 3nh6_A ATP-binding cassette SU 96.5 0.001 3.4E-08 51.1 2.3 22 17-38 82-103 (306)
345 3umf_A Adenylate kinase; rossm 96.5 0.0024 8.2E-08 46.4 4.1 21 17-37 31-51 (217)
346 2pbr_A DTMP kinase, thymidylat 96.5 0.0016 5.5E-08 46.1 3.1 21 17-37 2-22 (195)
347 1ixz_A ATP-dependent metallopr 96.5 0.0015 5E-08 48.6 2.9 22 18-39 52-73 (254)
348 2vli_A Antibiotic resistance p 96.5 0.00099 3.4E-08 46.7 1.9 23 15-37 5-27 (183)
349 1zak_A Adenylate kinase; ATP:A 96.5 0.0012 4.1E-08 48.0 2.4 21 16-36 6-26 (222)
350 2jeo_A Uridine-cytidine kinase 96.5 0.0018 6.2E-08 47.9 3.4 23 15-37 25-47 (245)
351 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0014 4.8E-08 51.3 2.9 24 17-40 32-55 (359)
352 3be4_A Adenylate kinase; malar 96.5 0.0015 5E-08 47.5 2.8 22 16-37 6-27 (217)
353 1xjc_A MOBB protein homolog; s 96.5 0.0018 6.2E-08 45.1 3.1 23 16-38 5-27 (169)
354 2bbs_A Cystic fibrosis transme 96.5 0.0016 5.4E-08 49.6 3.0 23 17-39 66-88 (290)
355 3tqc_A Pantothenate kinase; bi 96.5 0.0022 7.6E-08 49.5 3.8 26 12-37 89-114 (321)
356 1z47_A CYSA, putative ABC-tran 96.5 0.0016 5.6E-08 50.9 3.0 23 17-39 43-65 (355)
357 1ak2_A Adenylate kinase isoenz 96.4 0.0019 6.5E-08 47.4 3.3 24 14-37 15-38 (233)
358 3tui_C Methionine import ATP-b 96.4 0.0017 5.8E-08 51.0 3.1 23 17-39 56-78 (366)
359 2ze6_A Isopentenyl transferase 96.4 0.0017 5.7E-08 48.4 3.0 21 17-37 3-23 (253)
360 2p5t_B PEZT; postsegregational 96.4 0.0014 4.9E-08 48.8 2.6 26 12-37 29-54 (253)
361 1rz3_A Hypothetical protein rb 96.4 0.0023 7.8E-08 45.9 3.5 25 13-37 20-44 (201)
362 2c95_A Adenylate kinase 1; tra 96.4 0.0017 5.9E-08 46.0 2.9 22 16-37 10-31 (196)
363 1odf_A YGR205W, hypothetical 3 96.4 0.0023 7.9E-08 48.7 3.7 25 12-36 28-52 (290)
364 1jbk_A CLPB protein; beta barr 96.4 0.0018 6.1E-08 45.4 2.9 23 16-38 44-66 (195)
365 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.002 7E-08 48.1 3.4 22 16-37 5-26 (260)
366 1nn5_A Similar to deoxythymidy 96.4 0.0018 6.2E-08 46.6 3.0 23 15-37 9-31 (215)
367 2z0h_A DTMP kinase, thymidylat 96.4 0.0019 6.5E-08 45.8 3.1 22 17-38 2-23 (197)
368 2yyz_A Sugar ABC transporter, 96.4 0.0018 6E-08 50.8 3.0 23 17-39 31-53 (359)
369 3rlf_A Maltose/maltodextrin im 96.4 0.0018 6.2E-08 51.1 3.1 23 17-39 31-53 (381)
370 1e6c_A Shikimate kinase; phosp 96.4 0.0019 6.5E-08 44.8 3.0 22 16-37 3-24 (173)
371 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0016 5.5E-08 50.5 2.8 23 17-39 173-195 (330)
372 2bwj_A Adenylate kinase 5; pho 96.4 0.0018 6.2E-08 46.0 2.9 22 16-37 13-34 (199)
373 2it1_A 362AA long hypothetical 96.4 0.0018 6.3E-08 50.8 3.1 23 17-39 31-53 (362)
374 2pez_A Bifunctional 3'-phospho 96.4 0.0024 8.3E-08 44.7 3.4 23 15-37 5-27 (179)
375 2gza_A Type IV secretion syste 96.4 0.0017 5.9E-08 51.0 2.8 23 17-39 177-199 (361)
376 1gtv_A TMK, thymidylate kinase 96.4 0.00081 2.8E-08 48.5 0.8 21 17-37 2-22 (214)
377 2ewv_A Twitching motility prot 96.4 0.0018 6E-08 51.2 2.8 22 17-38 138-159 (372)
378 1g29_1 MALK, maltose transport 96.4 0.002 6.8E-08 50.8 3.0 23 17-39 31-53 (372)
379 1v43_A Sugar-binding transport 96.4 0.002 6.9E-08 50.7 3.1 23 17-39 39-61 (372)
380 2iyv_A Shikimate kinase, SK; t 96.3 0.0021 7.2E-08 45.2 2.9 21 17-37 4-24 (184)
381 1rj9_A FTSY, signal recognitio 96.3 0.002 6.7E-08 49.4 2.9 90 65-167 186-287 (304)
382 1p9r_A General secretion pathw 96.3 0.002 6.7E-08 51.7 2.9 23 17-39 169-191 (418)
383 1iy2_A ATP-dependent metallopr 96.3 0.0022 7.4E-08 48.4 2.9 22 18-39 76-97 (278)
384 1in4_A RUVB, holliday junction 96.3 0.0021 7.1E-08 49.9 2.9 22 17-38 53-74 (334)
385 3b9q_A Chloroplast SRP recepto 96.3 0.0022 7.5E-08 49.1 2.9 23 15-37 100-122 (302)
386 1sq5_A Pantothenate kinase; P- 96.3 0.0027 9.2E-08 48.7 3.5 25 14-38 79-103 (308)
387 1vht_A Dephospho-COA kinase; s 96.3 0.0028 9.6E-08 45.9 3.4 23 15-37 4-26 (218)
388 2oap_1 GSPE-2, type II secreti 96.3 0.0021 7.2E-08 52.9 2.9 23 17-39 262-284 (511)
389 3d31_A Sulfate/molybdate ABC t 96.3 0.0017 5.7E-08 50.8 2.2 23 17-39 28-50 (348)
390 2grj_A Dephospho-COA kinase; T 96.3 0.0034 1.2E-07 44.7 3.6 27 12-38 9-35 (192)
391 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0023 8E-08 46.5 2.9 22 17-38 25-46 (235)
392 1uj2_A Uridine-cytidine kinase 96.3 0.0029 9.9E-08 47.0 3.3 25 13-37 20-44 (252)
393 1zuh_A Shikimate kinase; alpha 96.2 0.003 1E-07 43.7 3.2 22 15-36 7-28 (168)
394 4e22_A Cytidylate kinase; P-lo 96.2 0.0028 9.6E-08 47.2 3.2 22 15-36 27-48 (252)
395 3r20_A Cytidylate kinase; stru 96.2 0.0029 9.9E-08 46.5 3.1 23 14-36 8-30 (233)
396 3gd7_A Fusion complex of cysti 96.2 0.0026 9E-08 50.4 2.9 22 17-38 49-70 (390)
397 1lv7_A FTSH; alpha/beta domain 96.1 0.003 1E-07 47.0 2.9 24 15-38 45-68 (257)
398 2w58_A DNAI, primosome compone 96.1 0.0031 1.1E-07 45.0 2.9 23 16-38 55-77 (202)
399 1cr0_A DNA primase/helicase; R 96.1 0.0027 9.2E-08 48.3 2.7 22 17-38 37-58 (296)
400 1oxx_K GLCV, glucose, ABC tran 96.1 0.0017 5.7E-08 50.9 1.5 23 17-39 33-55 (353)
401 1nij_A Hypothetical protein YJ 96.1 0.0022 7.5E-08 49.5 2.1 24 16-39 5-28 (318)
402 2p65_A Hypothetical protein PF 96.1 0.0025 8.6E-08 44.5 2.3 23 16-38 44-66 (187)
403 2f6r_A COA synthase, bifunctio 96.1 0.0037 1.3E-07 47.3 3.3 24 13-36 73-96 (281)
404 3kta_A Chromosome segregation 96.1 0.0033 1.1E-07 44.0 2.9 21 17-37 28-48 (182)
405 1m7g_A Adenylylsulfate kinase; 96.1 0.0034 1.1E-07 45.3 2.9 24 14-37 24-47 (211)
406 3bos_A Putative DNA replicatio 96.1 0.0037 1.2E-07 45.6 3.1 24 15-38 52-75 (242)
407 4eaq_A DTMP kinase, thymidylat 96.1 0.0035 1.2E-07 46.0 2.9 24 15-38 26-49 (229)
408 2cvh_A DNA repair and recombin 96.1 0.0035 1.2E-07 45.2 2.9 21 17-37 22-42 (220)
409 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0028 9.4E-08 51.5 2.5 24 16-39 139-162 (460)
410 3gmt_A Adenylate kinase; ssgci 96.0 0.0042 1.4E-07 45.5 3.2 24 13-36 6-29 (230)
411 1n0w_A DNA repair protein RAD5 96.0 0.0036 1.2E-07 45.9 2.9 22 17-38 26-47 (243)
412 2og2_A Putative signal recogni 96.0 0.0036 1.2E-07 49.1 2.9 23 15-37 157-179 (359)
413 3nwj_A ATSK2; P loop, shikimat 96.0 0.0034 1.2E-07 46.7 2.7 22 16-37 49-70 (250)
414 3n70_A Transport activator; si 96.0 0.0043 1.5E-07 41.9 3.0 25 15-39 24-48 (145)
415 2yhs_A FTSY, cell division pro 96.0 0.0036 1.2E-07 51.0 2.9 93 64-169 376-480 (503)
416 1ltq_A Polynucleotide kinase; 96.0 0.0045 1.6E-07 47.1 3.4 22 16-37 3-24 (301)
417 2obl_A ESCN; ATPase, hydrolase 95.9 0.0041 1.4E-07 48.5 3.0 23 17-39 73-95 (347)
418 4ido_A Atlastin-1; GTPase, GTP 95.9 0.02 6.8E-07 46.2 6.9 25 12-36 64-88 (457)
419 3zvl_A Bifunctional polynucleo 95.9 0.0068 2.3E-07 48.6 4.1 25 14-38 257-281 (416)
420 1tue_A Replication protein E1; 95.9 0.0037 1.3E-07 44.9 2.3 22 17-38 60-81 (212)
421 1svm_A Large T antigen; AAA+ f 95.9 0.0044 1.5E-07 48.9 2.9 22 16-37 170-191 (377)
422 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0059 2E-07 41.5 3.1 19 18-36 26-44 (149)
423 3b9p_A CG5977-PA, isoform A; A 95.8 0.0049 1.7E-07 46.8 2.8 24 15-38 54-77 (297)
424 1njg_A DNA polymerase III subu 95.8 0.0052 1.8E-07 44.6 2.9 21 17-37 47-67 (250)
425 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.0054 1.8E-07 45.5 3.0 25 14-38 38-62 (262)
426 3h4m_A Proteasome-activating n 95.8 0.0052 1.8E-07 46.3 2.8 24 15-38 51-74 (285)
427 2chg_A Replication factor C sm 95.7 0.0058 2E-07 43.8 2.9 21 18-38 41-61 (226)
428 3t15_A Ribulose bisphosphate c 95.7 0.0066 2.3E-07 46.2 3.3 25 14-38 35-59 (293)
429 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0062 2.1E-07 50.5 3.3 23 17-39 49-71 (538)
430 1p5z_B DCK, deoxycytidine kina 95.7 0.004 1.4E-07 46.6 2.0 25 14-38 23-47 (263)
431 3cf0_A Transitional endoplasmi 95.7 0.0057 1.9E-07 46.7 2.8 24 15-38 49-72 (301)
432 1nlf_A Regulatory protein REPA 95.7 0.0056 1.9E-07 46.1 2.7 21 17-37 32-52 (279)
433 3euj_A Chromosome partition pr 95.7 0.006 2.1E-07 49.7 2.9 21 17-37 31-51 (483)
434 1q3t_A Cytidylate kinase; nucl 95.7 0.0073 2.5E-07 44.3 3.2 25 13-37 14-38 (236)
435 1l8q_A Chromosomal replication 95.6 0.006 2.1E-07 47.0 2.8 23 16-38 38-60 (324)
436 3ozx_A RNAse L inhibitor; ATP 95.6 0.0063 2.2E-07 50.4 3.0 23 17-39 27-49 (538)
437 2qmh_A HPR kinase/phosphorylas 95.6 0.0077 2.6E-07 43.0 2.9 26 15-40 34-59 (205)
438 2dpy_A FLII, flagellum-specifi 95.6 0.0068 2.3E-07 48.9 3.0 23 17-39 159-181 (438)
439 3syl_A Protein CBBX; photosynt 95.6 0.0085 2.9E-07 45.7 3.4 24 14-37 66-89 (309)
440 1d2n_A N-ethylmaleimide-sensit 95.6 0.01 3.5E-07 44.5 3.8 26 13-38 62-87 (272)
441 3b60_A Lipid A export ATP-bind 95.6 0.0069 2.3E-07 50.7 3.0 23 17-39 371-393 (582)
442 3ake_A Cytidylate kinase; CMP 95.5 0.0079 2.7E-07 42.9 2.9 21 17-37 4-24 (208)
443 3j16_B RLI1P; ribosome recycli 95.5 0.0074 2.5E-07 50.7 3.1 23 17-39 105-127 (608)
444 3b5x_A Lipid A export ATP-bind 95.5 0.0078 2.7E-07 50.4 3.2 23 17-39 371-393 (582)
445 2qby_A CDC6 homolog 1, cell di 95.4 0.0075 2.6E-07 47.3 2.8 23 16-38 46-68 (386)
446 2ga8_A Hypothetical 39.9 kDa p 95.4 0.011 3.9E-07 46.0 3.7 23 14-36 23-45 (359)
447 2dr3_A UPF0273 protein PH0284; 95.4 0.0084 2.9E-07 44.0 2.9 21 17-37 25-45 (247)
448 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.0089 3E-07 47.0 3.1 21 15-36 24-44 (365)
449 2px0_A Flagellar biosynthesis 95.4 0.0081 2.8E-07 45.8 2.7 90 64-166 183-278 (296)
450 3eie_A Vacuolar protein sortin 95.4 0.014 4.8E-07 45.0 4.1 25 14-38 50-74 (322)
451 3bk7_A ABC transporter ATP-bin 95.4 0.0092 3.2E-07 50.2 3.2 23 17-39 119-141 (607)
452 1ofh_A ATP-dependent HSL prote 95.4 0.009 3.1E-07 45.4 2.9 24 15-38 50-73 (310)
453 3ozx_A RNAse L inhibitor; ATP 95.4 0.0089 3E-07 49.5 3.0 24 17-40 296-319 (538)
454 1vma_A Cell division protein F 95.3 0.0096 3.3E-07 45.6 2.9 92 64-168 187-290 (306)
455 1sxj_E Activator 1 40 kDa subu 95.3 0.0075 2.5E-07 46.9 2.4 21 18-38 39-59 (354)
456 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.0092 3.1E-07 46.1 2.8 25 15-39 45-69 (322)
457 1fnn_A CDC6P, cell division co 95.3 0.0094 3.2E-07 46.8 2.9 23 17-39 46-68 (389)
458 1pzn_A RAD51, DNA repair and r 95.3 0.0088 3E-07 46.7 2.7 23 17-39 133-155 (349)
459 3crm_A TRNA delta(2)-isopenten 95.3 0.01 3.5E-07 45.7 3.0 22 16-37 6-27 (323)
460 3bk7_A ABC transporter ATP-bin 95.3 0.0099 3.4E-07 50.0 3.1 24 17-40 384-407 (607)
461 1yqt_A RNAse L inhibitor; ATP- 95.3 0.011 3.7E-07 49.0 3.3 23 17-39 314-336 (538)
462 2yl4_A ATP-binding cassette SU 95.3 0.0071 2.4E-07 50.8 2.2 23 17-39 372-394 (595)
463 4fcw_A Chaperone protein CLPB; 95.3 0.01 3.5E-07 45.2 2.9 23 16-38 48-70 (311)
464 1sxj_C Activator 1 40 kDa subu 95.2 0.0099 3.4E-07 46.1 2.8 22 18-39 49-70 (340)
465 2h92_A Cytidylate kinase; ross 95.2 0.01 3.5E-07 42.9 2.7 23 15-37 3-25 (219)
466 3qf4_B Uncharacterized ABC tra 95.2 0.0079 2.7E-07 50.5 2.4 23 17-39 383-405 (598)
467 4b4t_K 26S protease regulatory 95.2 0.011 3.6E-07 47.5 3.0 25 14-38 205-229 (428)
468 1c9k_A COBU, adenosylcobinamid 95.2 0.013 4.4E-07 41.2 3.0 21 18-38 2-22 (180)
469 4b4t_M 26S protease regulatory 95.2 0.014 4.8E-07 46.9 3.6 26 13-38 213-238 (434)
470 4dzz_A Plasmid partitioning pr 95.2 0.025 8.6E-07 40.2 4.6 85 64-156 76-162 (206)
471 3d3q_A TRNA delta(2)-isopenten 95.2 0.012 3.9E-07 45.8 2.9 22 16-37 8-29 (340)
472 4a82_A Cystic fibrosis transme 95.1 0.007 2.4E-07 50.6 1.8 23 17-39 369-391 (578)
473 2ocp_A DGK, deoxyguanosine kin 95.1 0.014 4.7E-07 42.9 3.2 23 16-38 3-25 (241)
474 4b4t_L 26S protease subunit RP 95.1 0.012 4.1E-07 47.3 3.0 26 13-38 213-238 (437)
475 3j16_B RLI1P; ribosome recycli 95.1 0.012 4.2E-07 49.4 3.1 23 18-40 381-403 (608)
476 3a8t_A Adenylate isopentenyltr 95.1 0.014 4.7E-07 45.2 3.2 22 17-38 42-63 (339)
477 3ld9_A DTMP kinase, thymidylat 95.1 0.017 5.8E-07 42.1 3.5 26 12-37 18-43 (223)
478 3u61_B DNA polymerase accessor 95.1 0.06 2E-06 41.3 6.8 22 18-39 51-72 (324)
479 3qf4_A ABC transporter, ATP-bi 95.1 0.0091 3.1E-07 50.1 2.3 22 17-38 371-392 (587)
480 1sxj_D Activator 1 41 kDa subu 95.1 0.012 4.2E-07 45.6 2.9 21 18-38 61-81 (353)
481 2r62_A Cell division protease 95.1 0.0055 1.9E-07 45.8 0.8 21 17-37 46-66 (268)
482 2v1u_A Cell division control p 95.0 0.011 3.7E-07 46.4 2.5 24 15-38 44-67 (387)
483 2qgz_A Helicase loader, putati 95.0 0.014 4.9E-07 44.7 3.1 24 15-38 152-175 (308)
484 2bjv_A PSP operon transcriptio 95.0 0.015 5E-07 43.4 3.1 24 16-39 30-53 (265)
485 3exa_A TRNA delta(2)-isopenten 95.0 0.015 5.1E-07 44.6 3.1 23 16-38 4-26 (322)
486 3uk6_A RUVB-like 2; hexameric 95.0 0.012 4.3E-07 45.9 2.7 23 16-38 71-93 (368)
487 3qks_A DNA double-strand break 95.0 0.016 5.5E-07 41.5 3.1 19 18-36 26-44 (203)
488 3tqf_A HPR(Ser) kinase; transf 95.0 0.017 5.9E-07 40.2 3.0 24 16-39 17-40 (181)
489 4b4t_J 26S protease regulatory 94.9 0.014 4.8E-07 46.4 2.9 25 14-38 181-205 (405)
490 2qp9_X Vacuolar protein sortin 94.9 0.014 4.9E-07 45.6 2.9 24 15-38 84-107 (355)
491 3ea0_A ATPase, para family; al 94.9 0.15 5E-06 37.2 8.2 87 64-159 119-205 (245)
492 3cr8_A Sulfate adenylyltranfer 94.9 0.0092 3.1E-07 49.5 1.8 25 14-38 368-392 (552)
493 2dhr_A FTSH; AAA+ protein, hex 94.9 0.014 4.8E-07 47.8 2.8 23 17-39 66-88 (499)
494 2z4s_A Chromosomal replication 94.9 0.014 4.9E-07 47.1 2.8 24 15-38 130-153 (440)
495 3pfi_A Holliday junction ATP-d 94.9 0.015 5.1E-07 44.9 2.9 23 16-38 56-78 (338)
496 3e2i_A Thymidine kinase; Zn-bi 94.8 0.19 6.3E-06 36.3 8.3 41 92-137 104-145 (219)
497 3v9p_A DTMP kinase, thymidylat 94.8 0.013 4.4E-07 42.9 2.3 23 15-37 25-47 (227)
498 4edh_A DTMP kinase, thymidylat 94.8 0.021 7.1E-07 41.3 3.3 23 15-37 6-28 (213)
499 3d8b_A Fidgetin-like protein 1 94.8 0.016 5.4E-07 45.4 2.9 25 14-38 116-140 (357)
500 2ce7_A Cell division protein F 94.8 0.016 5.4E-07 47.3 2.9 23 16-38 50-72 (476)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.4e-43 Score=260.27 Aligned_cols=171 Identities=38% Similarity=0.684 Sum_probs=144.9
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.+...+||+|+|.+|+|||||+++|+.+.+...+.+|.+.++....+..++..+.+.||||+|++.+..++..+++.+++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 45567999999999999999999999999999999999989998899999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
+++|||++++++++.+..|+..+......++|++||+||+|+.+ .+.+..++++.+++.+++.|++|||++|+||+++|
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~-~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F 167 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh-cCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHH
Confidence 99999999999999999999999888777899999999999964 56789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027985 171 FSIAREIKQRLV 182 (216)
Q Consensus 171 ~~l~~~~~~~~~ 182 (216)
+.|++.+.....
T Consensus 168 ~~i~~~i~~~~~ 179 (216)
T 4dkx_A 168 RRVAAALPGMES 179 (216)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHHHhhhc
Confidence 999988865443
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1e-37 Score=229.26 Aligned_cols=173 Identities=60% Similarity=1.033 Sum_probs=156.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
..++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 45778999999999999999999999999988888888888888888899888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+++..+++..++.++++||++|.|++++|
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887766799999999999965 34567788889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 027985 171 FSIAREIKQRLVES 184 (216)
Q Consensus 171 ~~l~~~~~~~~~~~ 184 (216)
++|.+.+.+.....
T Consensus 163 ~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 163 LTMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998765544
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.5e-36 Score=222.97 Aligned_cols=171 Identities=39% Similarity=0.697 Sum_probs=149.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 35678999999999999999999999999888888888888888888888888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCCCCC
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETSAKTNFN 165 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~ 165 (216)
+|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. ...+..+++..++. ..++.++++||++|.|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS--CCCSCHHHHHHHHHHTTSCCEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 9999999999999999999888876543 468999999999996 34566777888877 5668999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 027985 166 VEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 166 i~~l~~~l~~~~~~~~~~ 183 (216)
++++|++|.+.+.+....
T Consensus 162 i~~l~~~l~~~~~~~~~~ 179 (207)
T 1vg8_A 162 VEQAFQTIARNALKQETE 179 (207)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999876654
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=4.3e-36 Score=220.36 Aligned_cols=182 Identities=35% Similarity=0.619 Sum_probs=149.5
Q ss_pred CCCCccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 027985 1 MATAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (216)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 80 (216)
|++..+. .......++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..+
T Consensus 1 m~~~~~~-~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (206)
T 2bov_A 1 MAANKPK-GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAI 78 (206)
T ss_dssp -----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHH
T ss_pred CCccccc-CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHH
Confidence 4443333 23445679999999999999999999999888777777765444 456678888889999999999999888
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEe
Q 027985 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETS 159 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (216)
+..+++.+|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..+++..++.++++|
T Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~S 157 (206)
T 2bov_A 79 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETS 157 (206)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc-cccccHHHHHHHHHHhCCeEEEEe
Confidence 99999999999999999999999999999988877653 4789999999999964 345778888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985 160 AKTNFNVEQVFFSIAREIKQRLVESD 185 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~~~~~~ 185 (216)
|++|.|++++|++|.+.+.++..+..
T Consensus 158 a~~g~gi~~l~~~l~~~i~~~~~~~~ 183 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIRARKMEDS 183 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHcccccc
Confidence 99999999999999999987654443
No 5
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=2.2e-35 Score=212.78 Aligned_cols=175 Identities=69% Similarity=1.176 Sum_probs=128.9
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
...++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (183)
T 2fu5_C 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 82 (183)
T ss_dssp CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence 34578899999999999999999999998888888888888888888888988899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|++++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 161 (183)
T 2fu5_C 83 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENA 161 (183)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999999999999887666799999999999964 3467788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 027985 170 FFSIAREIKQRLVESD 185 (216)
Q Consensus 170 ~~~l~~~~~~~~~~~~ 185 (216)
|++|.+.+.++..+..
T Consensus 162 ~~~l~~~i~~~~~~~~ 177 (183)
T 2fu5_C 162 FFTLARDIKAKMDKNW 177 (183)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999987766544
No 6
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-35 Score=221.29 Aligned_cols=172 Identities=50% Similarity=0.845 Sum_probs=145.0
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
..++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 35678999999999999999999999999988888888888888888899888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..+++..+++..++.++++||++++|++++|
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH-LRAVPTEESKTFAQENQLLFTETSALNSENVDKAF 167 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG-GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999877666799999999999964 34567788889999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027985 171 FSIAREIKQRLVE 183 (216)
Q Consensus 171 ~~l~~~~~~~~~~ 183 (216)
++|.+.+.++...
T Consensus 168 ~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 168 EELINTIYQKVSK 180 (223)
T ss_dssp HHHHHHHTTCC--
T ss_pred HHHHHHHHHHhhh
Confidence 9999998765443
No 7
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1e-34 Score=210.48 Aligned_cols=177 Identities=53% Similarity=0.927 Sum_probs=155.5
Q ss_pred CccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 027985 4 APARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83 (216)
Q Consensus 4 ~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 83 (216)
++.......++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+...+..
T Consensus 11 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 90 (189)
T 2gf9_A 11 SSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTA 90 (189)
T ss_dssp ---CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGG
T ss_pred ccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHH
Confidence 33444445678999999999999999999999999988777888887787778888888899999999999999999999
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCC
Q 027985 84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTN 163 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (216)
+++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|
T Consensus 91 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 169 (189)
T 2gf9_A 91 YYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED-ERVVPAEDGRRLADDLGFEFFEASAKEN 169 (189)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 999999999999999999999999999998887666799999999999954 3456778889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 027985 164 FNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 164 ~~i~~l~~~l~~~~~~~~ 181 (216)
.|++++|++|.+.+.++.
T Consensus 170 ~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 170 INVKQVFERLVDVICEKM 187 (189)
T ss_dssp BSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999987654
No 8
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=208.18 Aligned_cols=177 Identities=54% Similarity=0.925 Sum_probs=154.7
Q ss_pred cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (216)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (216)
|....+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 44567789999999999999999999999999888888888888888899999988999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
+|++|+|||++++.++..+..|+..+..... +.|+++|+||+|+.+ ...+..++...++...++.++++||++|.|++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPE-RKVVETEDAYKFAGQMGIQLFETSAKENVNVE 159 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCch-hcccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 9999999999999999999999998877654 689999999999864 45577788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 027985 168 QVFFSIAREIKQRLVESDS 186 (216)
Q Consensus 168 ~l~~~l~~~~~~~~~~~~~ 186 (216)
++|++|.+.+.+...+...
T Consensus 160 ~l~~~l~~~~~~~~~~~~~ 178 (181)
T 3tw8_B 160 EMFNCITELVLRAKKDNLA 178 (181)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 9999999999887766543
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.8e-35 Score=212.62 Aligned_cols=173 Identities=46% Similarity=0.839 Sum_probs=155.3
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
+...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 34567889999999999999999999999998888888888888888888999889999999999999999899999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|+|+++
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999999887666799999999999964 456778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027985 169 VFFSIAREIKQRLV 182 (216)
Q Consensus 169 l~~~l~~~~~~~~~ 182 (216)
+|++|.+.+.++..
T Consensus 179 l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 179 LFLDLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999886543
No 10
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.3e-34 Score=209.16 Aligned_cols=177 Identities=45% Similarity=0.784 Sum_probs=157.7
Q ss_pred ccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027985 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (216)
+|+...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+...+..+++
T Consensus 2 ~m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 81 (186)
T 2bme_A 2 HMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR 81 (186)
T ss_dssp --CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred CcccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence 45666788999999999999999999999999998888888888888888889988889999999999999999999999
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNV 166 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (216)
.+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+++..+++..++.++++||++|+|+
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENELMFLETSALTGENV 160 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 999999999999999999999999888877666899999999999954 3456778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 027985 167 EQVFFSIAREIKQRLVES 184 (216)
Q Consensus 167 ~~l~~~l~~~~~~~~~~~ 184 (216)
+++|++|.+.+.++..+.
T Consensus 161 ~~l~~~l~~~~~~~~~~~ 178 (186)
T 2bme_A 161 EEAFVQCARKILNKIESG 178 (186)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 999999999998765443
No 11
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=209.76 Aligned_cols=174 Identities=66% Similarity=1.095 Sum_probs=157.3
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
....+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 34567889999999999999999999999999888889988889889999999889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..+..+.++...++.++++||++|.|+++
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999999999888777899999999999965 456777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 027985 169 VFFSIAREIKQRLVE 183 (216)
Q Consensus 169 l~~~l~~~~~~~~~~ 183 (216)
+|++|.+.+.++...
T Consensus 169 l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 169 SFMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999866443
No 12
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2.3e-34 Score=209.03 Aligned_cols=171 Identities=50% Similarity=0.899 Sum_probs=150.8
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 46789999999999999999999999999888888888877888888889888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++++|++++|
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887666899999999999954 44577888899999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027985 171 FSIAREIKQRLV 182 (216)
Q Consensus 171 ~~l~~~~~~~~~ 182 (216)
++|.+.+.++..
T Consensus 176 ~~l~~~i~~~~~ 187 (191)
T 2a5j_A 176 INTAKEIYRKIQ 187 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 13
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=7.3e-34 Score=208.16 Aligned_cols=173 Identities=54% Similarity=0.957 Sum_probs=155.8
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
..++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 35678999999999999999999999999888888888878888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..+.++.+++..++.++++||++|.|++++|
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT-SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999998877666799999999999965 44567888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 027985 171 FSIAREIKQRLVES 184 (216)
Q Consensus 171 ~~l~~~~~~~~~~~ 184 (216)
++|.+.+.++..+.
T Consensus 163 ~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 163 ERLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998776554
No 14
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.2e-34 Score=207.85 Aligned_cols=174 Identities=43% Similarity=0.788 Sum_probs=153.9
Q ss_pred cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (216)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (216)
.....+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 97 (193)
T 2oil_A 18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 97 (193)
T ss_dssp --CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 33456788999999999999999999999999888888887777877888888888999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..++++.++...++.++++||++|.|++
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ-AREVPTEEARMFAENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999988776666799999999999964 34567788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 027985 168 QVFFSIAREIKQRLV 182 (216)
Q Consensus 168 ~l~~~l~~~~~~~~~ 182 (216)
++|++|.+.+.++..
T Consensus 177 ~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 177 LAFETVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999876653
No 15
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=211.33 Aligned_cols=170 Identities=49% Similarity=0.869 Sum_probs=144.8
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
..++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 45678999999999999999999999999887788888777878888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNVEQV 169 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l 169 (216)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++++.+++..++ .++++||++|+|++++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 183 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE-LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA 183 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc-ccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999887666799999999999964 345778889999999998 9999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027985 170 FFSIAREIKQRL 181 (216)
Q Consensus 170 ~~~l~~~~~~~~ 181 (216)
|++|.+.+.++.
T Consensus 184 ~~~l~~~i~~~~ 195 (201)
T 2hup_A 184 FLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999887543
No 16
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=4.8e-34 Score=204.78 Aligned_cols=169 Identities=47% Similarity=0.867 Sum_probs=151.4
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
...++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 45678899999999999999999999999988777888777787888888888899999999999999998999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|++++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 168 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999998887766899999999999954 4456778899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027985 170 FFSIAREIKQ 179 (216)
Q Consensus 170 ~~~l~~~~~~ 179 (216)
|++|.+.+.+
T Consensus 169 ~~~l~~~i~~ 178 (179)
T 1z0f_A 169 FLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhh
Confidence 9999987753
No 17
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3.8e-34 Score=203.65 Aligned_cols=165 Identities=61% Similarity=1.101 Sum_probs=144.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
+.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 57999999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (216)
|+|++++.++..+..|+..+......+.|+++|+||+|+. ...+..++++.+++..++.++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC--cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999988776689999999999993 35567888899999999999999999999999999999
Q ss_pred HHHHHHH
Q 027985 174 AREIKQR 180 (216)
Q Consensus 174 ~~~~~~~ 180 (216)
.+.+.++
T Consensus 160 ~~~~~~~ 166 (170)
T 1g16_A 160 AKLIQEK 166 (170)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9988754
No 18
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=208.63 Aligned_cols=173 Identities=45% Similarity=0.770 Sum_probs=144.3
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 34577899999999999999999999999888888888887888888888988899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..+++..+++..++.++++||++|.|++++
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVEEA 178 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999988877666899999999999854 3456778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027985 170 FFSIAREIKQRLVE 183 (216)
Q Consensus 170 ~~~l~~~~~~~~~~ 183 (216)
|++|.+.+.++..+
T Consensus 179 ~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 179 FLKCARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998876544
No 19
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=6.5e-34 Score=202.52 Aligned_cols=166 Identities=37% Similarity=0.773 Sum_probs=143.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45789999999999999999999999988888888888888878888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
++|+|++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|++++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 9999999999999999999888776655789999999999964 345678888999999999999999999999999999
Q ss_pred HHHHHHH
Q 027985 172 SIAREIK 178 (216)
Q Consensus 172 ~l~~~~~ 178 (216)
+|.+.+.
T Consensus 162 ~l~~~~~ 168 (170)
T 1z08_A 162 DLCKRMI 168 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
No 20
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=8.8e-34 Score=203.91 Aligned_cols=169 Identities=40% Similarity=0.712 Sum_probs=150.2
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 45678999999999999999999999999888777888777888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|+|++++|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD-ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99999999999999999999999887666899999999999964 44567888999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027985 171 FSIAREIKQR 180 (216)
Q Consensus 171 ~~l~~~~~~~ 180 (216)
++|.+.+.+.
T Consensus 167 ~~l~~~~~~~ 176 (181)
T 2efe_B 167 YEIARRLPRV 176 (181)
T ss_dssp HHHHHTCC--
T ss_pred HHHHHHHHhc
Confidence 9998877543
No 21
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-33 Score=208.12 Aligned_cols=174 Identities=59% Similarity=1.066 Sum_probs=152.4
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
....+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+
T Consensus 14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 33456789999999999999999999999998888888888888888888998888999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ...+..+++..+++..++.++++||+++.|+++
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNE 171 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS--SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc--ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999998888766678999999999993 455677888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 027985 169 VFFSIAREIKQRLVES 184 (216)
Q Consensus 169 l~~~l~~~~~~~~~~~ 184 (216)
+|++|.+.+.++....
T Consensus 172 l~~~l~~~~~~~~~~~ 187 (213)
T 3cph_A 172 IFFTLAKLIQEKIDSN 187 (213)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999988766443
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-33 Score=201.58 Aligned_cols=170 Identities=52% Similarity=0.949 Sum_probs=143.7
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
...+..++|+|+|.+|+|||||+++|++..+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 44678899999999999999999999998884 46677878788777778898889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+++.|+++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL 163 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 9999999999999999999999998887666899999999999965 455677888899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027985 169 VFFSIAREIKQR 180 (216)
Q Consensus 169 l~~~l~~~~~~~ 180 (216)
+|++|.+.+.++
T Consensus 164 l~~~l~~~~~~~ 175 (180)
T 2g6b_A 164 AFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999888644
No 23
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=208.67 Aligned_cols=172 Identities=45% Similarity=0.895 Sum_probs=144.4
Q ss_pred ccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027985 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (216)
...+..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++
T Consensus 18 ~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (192)
T 2il1_A 18 GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR 97 (192)
T ss_dssp ----CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred CCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 34456778999999999999999999999999888778888888888888889988899999999999999988999999
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEecCCCCC
Q 027985 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETSAKTNFN 165 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~ 165 (216)
.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++.. ++.++++||++|+|
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREITRQQGEKFAQQITGMRFCEASAKDNFN 176 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence 999999999999999999999999888887766899999999999954 3456777888888874 78999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIKQ 179 (216)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (216)
++++|++|.+.+.+
T Consensus 177 i~~l~~~l~~~i~~ 190 (192)
T 2il1_A 177 VDEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 24
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.3e-35 Score=212.85 Aligned_cols=173 Identities=54% Similarity=0.966 Sum_probs=155.4
Q ss_pred cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027985 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (216)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 87 (216)
.....++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++.
T Consensus 16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence 34456788999999999999999999999999888888888777888888887777899999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|++
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVR 174 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 99999999999999999999999999887767899999999999854 45677888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027985 168 QVFFSIAREIKQRL 181 (216)
Q Consensus 168 ~l~~~l~~~~~~~~ 181 (216)
++|++|.+.+.++.
T Consensus 175 ~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 175 QAFERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987654
No 25
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.9e-34 Score=211.77 Aligned_cols=176 Identities=49% Similarity=0.888 Sum_probs=151.8
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCe----------EEEEEEEeCCCccccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK----------RIKLQIWDTAGQERFR 78 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~ 78 (216)
....++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++. .+.+.|||+||++.+.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 345678899999999999999999999999988888888887777777777665 6899999999999998
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEE
Q 027985 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFE 157 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (216)
..+..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..++++.+++..++.+++
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~ 177 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPYFE 177 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc-ccccCHHHHHHHHHHCCCcEEE
Confidence 8899999999999999999999999999999887765443 5789999999999954 3456788899999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985 158 TSAKTNFNVEQVFFSIAREIKQRLVESD 185 (216)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~~~~~~~~ 185 (216)
+||++++|++++|++|.+.+.++..+..
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~~~~~~~ 205 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMKRMEQCV 205 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999987665544
No 26
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=4.1e-33 Score=200.87 Aligned_cols=169 Identities=36% Similarity=0.590 Sum_probs=149.5
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
.......++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.|||+||++.+...+..+++.+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34566789999999999999999999999988888888877665 66778888888999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecC-CCCCH
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK-TNFNV 166 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i 166 (216)
|++++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+ +++|+
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQGKEMATKYNIPYIETSAKDPPLNV 169 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh-ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCH
Confidence 9999999999999999999999888654 345789999999999965 56788889999999999999999999 99999
Q ss_pred HHHHHHHHHHHHH
Q 027985 167 EQVFFSIAREIKQ 179 (216)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (216)
+++|++|.+.+.+
T Consensus 170 ~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 170 DKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 27
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.1e-33 Score=203.33 Aligned_cols=171 Identities=42% Similarity=0.706 Sum_probs=136.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccccccccccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
.....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.++ +..+.+.|||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 45678999999999999999999999999888888888777777777776 55579999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCCCC
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETSAKTNF 164 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 164 (216)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+....+..++++.+++ ..+..++++||++|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999988876543 5789999999999966556677888888887 456899999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREIKQRL 181 (216)
Q Consensus 165 ~i~~l~~~l~~~~~~~~ 181 (216)
|++++|++|.+.+.+++
T Consensus 164 gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQN 180 (182)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999887653
No 28
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=4.9e-34 Score=210.48 Aligned_cols=168 Identities=33% Similarity=0.633 Sum_probs=141.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 34679999999999999999999999888777777766443 45567788788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-------CCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985 92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKR-------AVPTAKGQELADEYGI-KFFETSAKT 162 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
|+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+... .+..+++..+++..++ .++++||++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 9999999999999987 78888877654 789999999999854221 3467888899999996 999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~~ 181 (216)
|+|++++|++|.+.+.+..
T Consensus 164 g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHhhhh
Confidence 9999999999999887543
No 29
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=3.9e-33 Score=202.53 Aligned_cols=174 Identities=48% Similarity=0.872 Sum_probs=152.0
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEE-EEEEEECCe---------EEEEEEEeCCCccccccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFK-IRTIELDGK---------RIKLQIWDTAGQERFRTI 80 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~ 80 (216)
..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++. ...+..++. .+.+.|||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4678899999999999999999999999888777888777776 556666655 689999999999999999
Q ss_pred cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEe
Q 027985 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETS 159 (216)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (216)
+..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..++++.+++..++.++++|
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~S 165 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED-QRAVKEEEARELAEKYGIPYFETS 165 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999998877654 5789999999999954 345677888999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhhc
Q 027985 160 AKTNFNVEQVFFSIAREIKQRLVESD 185 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~~~~~~ 185 (216)
|+++.|++++|++|.+.+.++..+..
T Consensus 166 a~~~~~v~~l~~~l~~~~~~~~~~~~ 191 (195)
T 3bc1_A 166 AANGTNISHAIEMLLDLIMKRMERSV 191 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999987665543
No 30
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=7.5e-33 Score=200.27 Aligned_cols=170 Identities=35% Similarity=0.615 Sum_probs=146.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+...+.++.+ +.....+.+++..+.+.|||+||++.+..++..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999888777666664 445566778888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ..+..+.++.+++..++.++++||++|.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS--CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc--cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999998887754 34789999999999963 56778889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 027985 172 SIAREIKQRLVESD 185 (216)
Q Consensus 172 ~l~~~~~~~~~~~~ 185 (216)
+|.+.+.++..+..
T Consensus 159 ~l~~~~~~~~~~~~ 172 (189)
T 4dsu_A 159 TLVREIRKHKEKMS 172 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcc
Confidence 99999987776654
No 31
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=3.8e-33 Score=200.43 Aligned_cols=171 Identities=32% Similarity=0.567 Sum_probs=148.8
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
......++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.|||+||++.+..++..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 34567899999999999999999999999888777777765554 66778888889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
++++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ ...+..++++.++...++.++++||++|.|+++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGASHHVAYFEASAKLRLNVDE 161 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 999999999999999999999888443 345789999999999964 345778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027985 169 VFFSIAREIKQRLV 182 (216)
Q Consensus 169 l~~~l~~~~~~~~~ 182 (216)
+|++|.+.+.++..
T Consensus 162 l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 162 AFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999876543
No 32
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-33 Score=199.17 Aligned_cols=164 Identities=43% Similarity=0.740 Sum_probs=148.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK--RAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
|+|++++.++..+..|+..+......+.|+++|+||+|+.+.. ..+..++.+.+++..++.++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999988766689999999999986432 56778888999999999999999999999999999
Q ss_pred HHHHHH
Q 027985 172 SIAREI 177 (216)
Q Consensus 172 ~l~~~~ 177 (216)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998754
No 33
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-33 Score=205.42 Aligned_cols=169 Identities=37% Similarity=0.703 Sum_probs=149.2
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 34577899999999999999999999999887777788777777777888877889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+++.|++++
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD-IREVPLKDAKEYAESIGAIVVETSAKNAINIEEL 176 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence 999999999999999999999999887666799999999999954 3456788899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027985 170 FFSIAREIKQ 179 (216)
Q Consensus 170 ~~~l~~~~~~ 179 (216)
|++|.+.+.+
T Consensus 177 ~~~l~~~i~~ 186 (192)
T 2fg5_A 177 FQGISRQIPP 186 (192)
T ss_dssp HHHHHHTCC-
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 34
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=5.9e-33 Score=197.46 Aligned_cols=165 Identities=39% Similarity=0.723 Sum_probs=149.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
.+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998887888888788888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
++|||++++.++..+..|+..+........|+++|+||+|+.+ ...+..++.+.+++..++.++++||++|.|++++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAKDYADSIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 9999999999999999999999887666899999999999964 345678888999999999999999999999999999
Q ss_pred HHHHHH
Q 027985 172 SIAREI 177 (216)
Q Consensus 172 ~l~~~~ 177 (216)
+|.+.+
T Consensus 162 ~i~~~i 167 (170)
T 1z0j_A 162 EISRRI 167 (170)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998765
No 35
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=2.9e-33 Score=198.95 Aligned_cols=164 Identities=44% Similarity=0.761 Sum_probs=147.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999999888877788887787888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+++..++...++.++++||++|+|++++|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999998887666899999999999854 3456778888899999999999999999999999999
Q ss_pred HHHHH
Q 027985 173 IAREI 177 (216)
Q Consensus 173 l~~~~ 177 (216)
|.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98765
No 36
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2e-33 Score=199.49 Aligned_cols=165 Identities=36% Similarity=0.678 Sum_probs=148.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999888888888887888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+++.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLD-DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 9999999999999999998887765 4789999999999864 3456778888999999999999999999999999999
Q ss_pred HHHHHHH
Q 027985 173 IAREIKQ 179 (216)
Q Consensus 173 l~~~~~~ 179 (216)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988753
No 37
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=4.9e-33 Score=200.14 Aligned_cols=168 Identities=31% Similarity=0.464 Sum_probs=147.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.|||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34679999999999999999999998888887778777666 66778888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|++++|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 160 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999998886654 34789999999999954 56678899999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027985 171 FSIAREIKQRL 181 (216)
Q Consensus 171 ~~l~~~~~~~~ 181 (216)
++|.+.+.+..
T Consensus 161 ~~l~~~~~~~~ 171 (181)
T 3t5g_A 161 RRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHhc
Confidence 99999886543
No 38
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.9e-33 Score=203.82 Aligned_cols=168 Identities=43% Similarity=0.809 Sum_probs=145.2
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-ccccccccccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAM 89 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d 89 (216)
.....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+. .++..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 45678999999999999999999999999888888888888888888889888999999999999887 78888999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCC---CC
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTN---FN 165 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~ 165 (216)
++|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+++ +|
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~ 174 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 174 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence 9999999999999999999999887765 45789999999999954 3456788889999999999999999999 99
Q ss_pred HHHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIKQ 179 (216)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (216)
++++|++|.+.+.+
T Consensus 175 i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 175 VEAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887753
No 39
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2.5e-33 Score=201.05 Aligned_cols=167 Identities=40% Similarity=0.725 Sum_probs=149.9
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.+...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34567999999999999999999999999888888888888888888899988899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
+++|+|++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..++.+.+++..++.++++||++|.|++++|
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999988877666799999999999964 34567788888999999999999999999999999
Q ss_pred HHHHHHHH
Q 027985 171 FSIAREIK 178 (216)
Q Consensus 171 ~~l~~~~~ 178 (216)
++|.+.+.
T Consensus 169 ~~l~~~~~ 176 (179)
T 2y8e_A 169 RRVAAALP 176 (179)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHh
Confidence 99987664
No 40
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=206.70 Aligned_cols=176 Identities=27% Similarity=0.463 Sum_probs=142.1
Q ss_pred cccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 027985 6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 85 (216)
Q Consensus 6 ~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 85 (216)
+.+.......++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+...+..++
T Consensus 15 ~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 93 (201)
T 3oes_A 15 YFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI 93 (201)
T ss_dssp --------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGT
T ss_pred CCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHH
Confidence 44455566789999999999999999999999998887777776555 55566666668999999999999999999999
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985 86 RGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF 164 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (216)
+.+|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (201)
T 3oes_A 94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP-EREVQAVEGKKLAESWGATFMESSARENQ 172 (201)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECCTTCHH
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc-ccccCHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 99999999999999999999999998886653 34689999999999964 45677888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 027985 165 NVEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 165 ~i~~l~~~l~~~~~~~~~~ 183 (216)
|++++|++|.+.+.+....
T Consensus 173 ~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 173 LTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhhhhh
Confidence 9999999999998765433
No 41
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=7.6e-33 Score=199.91 Aligned_cols=165 Identities=22% Similarity=0.372 Sum_probs=142.5
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
......+||+|+|.+|+|||||+++|++..+...+.++.. .+...+.+++..+.+.|||++|++.+. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 3566789999999999999999999999998777777633 445778889988999999999987765 788899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC-CCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMD-ESKRAVPTAKGQELADEYG-IKFFETSAKTNFNV 166 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 166 (216)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .....+..++++.+++..+ +.++++||++|+|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 99999999999999999999999877642 468999999999985 3356688889999999997 89999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027985 167 EQVFFSIAREIKQRL 181 (216)
Q Consensus 167 ~~l~~~l~~~~~~~~ 181 (216)
+++|++|.+.+.++.
T Consensus 168 ~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 168 ERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 42
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1e-32 Score=197.63 Aligned_cols=167 Identities=39% Similarity=0.683 Sum_probs=145.4
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 35678999999999999999999999999888888888888888888899988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-HhCCcEEEEecCCCCC
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAA----DNVNKILVGNKADMDESKRAVPTAKGQELAD-EYGIKFFETSAKTNFN 165 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~ 165 (216)
+++|||++++.++..+..|+..+..... .+.|+++|+||+|+. ...+..++++.+++ ..++.++++||++|.|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 9999999999999999999988876553 578999999999986 35667788888887 5568999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIKQ 179 (216)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (216)
++++|++|.+.+.+
T Consensus 161 i~~l~~~l~~~~~~ 174 (177)
T 1wms_A 161 VAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988763
No 43
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.2e-34 Score=207.12 Aligned_cols=164 Identities=32% Similarity=0.487 Sum_probs=140.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.|||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 34569999999999999999999999888776666665433 34566788888999999999999888888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ..+..+++..++...++.++++||++|.|++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNVKEL 161 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Confidence 999999999999999888877766542 3689999999999964 456778888899999999999999999999999
Q ss_pred HHHHHHHHH
Q 027985 170 FFSIAREIK 178 (216)
Q Consensus 170 ~~~l~~~~~ 178 (216)
|++|.+.+.
T Consensus 162 ~~~l~~~~~ 170 (199)
T 2gf0_A 162 FQELLTLET 170 (199)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHHHh
Confidence 999988664
No 44
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.7e-33 Score=201.95 Aligned_cols=172 Identities=46% Similarity=0.800 Sum_probs=151.7
Q ss_pred ccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027985 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (216)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 86 (216)
.+.......++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++
T Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (195)
T 1x3s_A 7 GMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR 86 (195)
T ss_dssp --CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT
T ss_pred CcccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhc
Confidence 34445567899999999999999999999999988888888888888888888988899999999999999999999999
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985 87 GAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN 165 (216)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (216)
.+|++|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+. ...+..+++..+++..++.++++||+++.|
T Consensus 87 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (195)
T 1x3s_A 87 GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDG 164 (195)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 9999999999999999999999998887654 2468999999999994 355677888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIKQR 180 (216)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (216)
++++|++|.+.+.+.
T Consensus 165 i~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 165 VQCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988754
No 45
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=206.54 Aligned_cols=168 Identities=46% Similarity=0.792 Sum_probs=138.5
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 45568999999999999999999999998877777887777878888889888999999999999998889999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----CCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE-----SKRAVPTAKGQELADEYGIKFFETSAKTNFN 165 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (216)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ....+..++++.+++..++.++++||++|.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 99999999999999999999988877666799999999999952 3456778888999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIK 178 (216)
Q Consensus 166 i~~l~~~l~~~~~ 178 (216)
++++|++|.+.+.
T Consensus 184 v~el~~~l~~~i~ 196 (199)
T 2p5s_A 184 IVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 46
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=3.6e-33 Score=206.25 Aligned_cols=171 Identities=20% Similarity=0.449 Sum_probs=144.6
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
......+||+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||++|++.+..++..+++.+|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3456789999999999999999999999999888888877665 455667777789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEE
Q 027985 90 GILLVYDVTDESSFNN-IRNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFF 156 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~ 156 (216)
++|+|||++++.++.. +..|+..+.... .+.|+++|+||+|+.++ ...+..+++..+++..++ .++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999998 688998888775 47899999999999643 356888999999999999 999
Q ss_pred EEecCCCCC-HHHHHHHHHHHHHHHHh
Q 027985 157 ETSAKTNFN-VEQVFFSIAREIKQRLV 182 (216)
Q Consensus 157 ~~Sa~~~~~-i~~l~~~l~~~~~~~~~ 182 (216)
++||++|.| ++++|++|.+.+.+...
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred EeccCCCcccHHHHHHHHHHHHhccCc
Confidence 999999998 99999999998875443
No 47
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.1e-32 Score=200.59 Aligned_cols=169 Identities=28% Similarity=0.558 Sum_probs=145.9
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
.......++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.|||+||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 95 (194)
T 3reg_A 17 IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 95 (194)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred ccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCC
Confidence 345667899999999999999999999999988777787765554 4567888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCCCCHHHHHHHHHHhCCc-EEEEecCCCCC
Q 027985 89 MGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-KRAVPTAKGQELADEYGIK-FFETSAKTNFN 165 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 165 (216)
|++|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. ...+..++++.+++..++. ++++||++|+|
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence 999999999999999997 66777777654 46899999999999653 4567889999999999987 99999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIKQ 179 (216)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (216)
++++|++|.+.+.+
T Consensus 175 i~~l~~~l~~~i~~ 188 (194)
T 3reg_A 175 LNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
No 48
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=6.3e-33 Score=197.29 Aligned_cols=164 Identities=28% Similarity=0.396 Sum_probs=132.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-ccccccccccEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGILL 93 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~ 93 (216)
.++|+|+|.+|+|||||+++|++........++.+.+.....+.+++..+.+.+||+||++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998877666666667778888888999889999999999988765 67778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|+|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh-cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 9999999999999999998877654 4789999999999964 4667888999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027985 173 IAREIKQ 179 (216)
Q Consensus 173 l~~~~~~ 179 (216)
|.+.+..
T Consensus 161 l~~~i~~ 167 (169)
T 3q85_A 161 AVRQIRL 167 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 49
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.7e-33 Score=201.86 Aligned_cols=167 Identities=34% Similarity=0.555 Sum_probs=144.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECC-eEEEEEEEeCCCccccccccccccccccE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++ ..+.+.|||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 34579999999999999999999999888777778877778778888876 56899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAA--DNVN-KILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
+|+|||++++.+++.+..|+..+..... ...| +++|+||+|+.+ ...+..++++.+++..++.++++||++|+|++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH-MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF 161 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 9999999999999999999888876432 1345 789999999954 34567788899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027985 168 QVFFSIAREIKQ 179 (216)
Q Consensus 168 ~l~~~l~~~~~~ 179 (216)
++|++|.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (178)
T 2hxs_A 162 LCFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 50
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=200.25 Aligned_cols=171 Identities=30% Similarity=0.483 Sum_probs=138.7
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
......++|+|+|.+|+|||||+++|++..+...+.++.... ....+.+++..+.+.|||+||++.+..++..+++.+|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDN-FSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEE-EEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccce-eEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 356678999999999999999999999988877767766533 3456778888889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEE
Q 027985 90 GILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFF 156 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~ 156 (216)
++|+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. ...+..+++..+++..++ .++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 999999999999999997 68888877654 7899999999999652 356778889999999887 999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHh
Q 027985 157 ETSAKTNFNVEQVFFSIAREIKQRLV 182 (216)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (216)
++||++|+|++++|++|.+.+.+...
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999998876644
No 51
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=195.98 Aligned_cols=168 Identities=31% Similarity=0.451 Sum_probs=133.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--cccccccccccccE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTITTAYYRGAMG 90 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 90 (216)
+..++|+|+|.+|+|||||+++|++..+...+. +.+.+.....+.+++..+.+.+||+||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 357999999999999999999999887755433 344456667778888888999999999887 45666778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.++...++.++++||++|+|++++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 159 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR-CREVSVEEGRACAVVFDCKFIETSATLQHNVAEL 159 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence 999999999999999999988887653 34789999999999965 3557778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027985 170 FFSIAREIKQRLV 182 (216)
Q Consensus 170 ~~~l~~~~~~~~~ 182 (216)
|++|.+.+.++..
T Consensus 160 ~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 160 FEGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhc
Confidence 9999998875543
No 52
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=4.2e-33 Score=203.07 Aligned_cols=168 Identities=28% Similarity=0.389 Sum_probs=141.0
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-cccccccccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAM 89 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d 89 (216)
..+..++|+|+|.+|+|||||+++|++........++.+.+.....+.+++..+.+.|||++|++.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 456789999999999999999999986544434455556666677788899889999999999987654 6777889999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|+++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc-cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 99999999999999999999988877543 4789999999999965 455778888999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027985 169 VFFSIAREIKQ 179 (216)
Q Consensus 169 l~~~l~~~~~~ 179 (216)
+|++|.+.+.+
T Consensus 178 lf~~l~~~i~~ 188 (195)
T 3cbq_A 178 LFEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=3.7e-32 Score=198.98 Aligned_cols=167 Identities=35% Similarity=0.624 Sum_probs=146.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE---------------------------
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR--------------------------- 63 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 63 (216)
+.+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence 34567999999999999999999999999888888888777777777777655
Q ss_pred ----------EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985 64 ----------IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (216)
Q Consensus 64 ----------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 133 (216)
+.+.|||+||++.+...+..+++.+|++|+|+|++++.++..+..|+..+..... .|+++|+||+|.
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D~- 159 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDK- 159 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTTC-
T ss_pred cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCCc-
Confidence 7899999999999999999999999999999999999999999999988877653 899999999993
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985 134 ESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (216)
....+..++++.+++..++.++++||++|.|++++|++|.+.+.++.
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 160 -NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp -C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred -ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 34567788999999999999999999999999999999999887653
No 54
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=7.4e-33 Score=203.26 Aligned_cols=174 Identities=24% Similarity=0.524 Sum_probs=142.8
Q ss_pred CccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 027985 4 APARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83 (216)
Q Consensus 4 ~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 83 (216)
+++.|.......++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..
T Consensus 17 ~~~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 95 (205)
T 1gwn_A 17 RGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPL 95 (205)
T ss_dssp ----------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGG
T ss_pred CCCCCCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHh
Confidence 4456666677889999999999999999999999998877777776555 345667777899999999999999999999
Q ss_pred ccccccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHh
Q 027985 84 YYRGAMGILLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEY 151 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~ 151 (216)
+++.+|++|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. ...+..++++.+++.+
T Consensus 96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174 (205)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence 99999999999999999999998 688888877643 6899999999999642 2457788899999988
Q ss_pred C-CcEEEEecC-CCCCHHHHHHHHHHHHHH
Q 027985 152 G-IKFFETSAK-TNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 152 ~-~~~~~~Sa~-~~~~i~~l~~~l~~~~~~ 179 (216)
+ +.++++||+ +++|++++|++|.+.+..
T Consensus 175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 175 GAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 8 699999999 689999999999988764
No 55
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=199.04 Aligned_cols=165 Identities=29% Similarity=0.479 Sum_probs=139.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..+ ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 345679999999999999999999999988877777776554 455677888899999999999887764 568899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEec-CCCCCH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSA-KTNFNV 166 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i 166 (216)
+|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++..++.++++|| ++|+|+
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ-YRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh-cCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 999999999999999999998887764 24789999999999954 4567888899999999999999999 899999
Q ss_pred HHHHHHHHHHHH
Q 027985 167 EQVFFSIAREIK 178 (216)
Q Consensus 167 ~~l~~~l~~~~~ 178 (216)
+++|++|.+.+.
T Consensus 174 ~~lf~~l~~~i~ 185 (187)
T 3c5c_A 174 QHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=3.5e-32 Score=196.34 Aligned_cols=171 Identities=36% Similarity=0.633 Sum_probs=146.1
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
......++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3455689999999999999999999999888777777665444 455677888889999999999999888999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..++++.+++..++.++++||+++.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 99999999999999999999988877654 4789999999999964 345678888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027985 169 VFFSIAREIKQRLV 182 (216)
Q Consensus 169 l~~~l~~~~~~~~~ 182 (216)
+|++|.+.+.++..
T Consensus 171 l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 171 VFFDLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999876554
No 57
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=5e-32 Score=194.34 Aligned_cols=165 Identities=23% Similarity=0.372 Sum_probs=137.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...+||+|+|.+|+|||||+++|++..+.. +.++.+ +.+...+.+++..+.+.|||+||++. ..+++.+|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 457999999999999999999999988876 556655 33456677888889999999999875 45788899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHHh-CCcEEEEecCCCCCHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDE-SKRAVPTAKGQELADEY-GIKFFETSAKTNFNVE 167 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~ 167 (216)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ....+..++++.+++.. ++.++++||++|+|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999999876665443 35789999999999853 34567888888898877 5899999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 027985 168 QVFFSIAREIKQRLVES 184 (216)
Q Consensus 168 ~l~~~l~~~~~~~~~~~ 184 (216)
++|++|.+.+.+...+.
T Consensus 158 ~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999988765543
No 58
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.7e-32 Score=196.73 Aligned_cols=165 Identities=28% Similarity=0.558 Sum_probs=143.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 45789999999999999999999999988777777765444 45567777778999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEE
Q 027985 92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFET 158 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~ 158 (216)
|+|||+++++++..+. .|+..+..... +.|+++|+||+|+.+. .+.+..+++..+++..++ .++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999997 78888877644 7899999999999653 245778889999999997 99999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 027985 159 SAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~ 178 (216)
||++|+|++++|++|.+.+.
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998764
No 59
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-32 Score=200.40 Aligned_cols=171 Identities=27% Similarity=0.411 Sum_probs=136.7
Q ss_pred cCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCC--CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-cccccccc
Q 027985 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAY 84 (216)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~ 84 (216)
.+...+..+||+|+|.+|+|||||+++|++... ... .++.+.+++...+.+++..+.+.+||++|.+. +..+...+
T Consensus 30 ~~~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~ 108 (211)
T 2g3y_A 30 SSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHC 108 (211)
T ss_dssp -----CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCC
T ss_pred ccccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHH
Confidence 334556789999999999999999999996433 333 23455566667788899888999999999876 45566678
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCC
Q 027985 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTN 163 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (216)
++.++++|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++.+.++...++.++++||++|
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~-~r~v~~~e~~~~a~~~~~~~~e~SAk~g 187 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSEGRACAVVFDCKFIETSAAVQ 187 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc-CceEeHHHHHHHHHHcCCEEEEEeCCCC
Confidence 899999999999999999999999988776532 34789999999999954 3557777888888889999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027985 164 FNVEQVFFSIAREIKQR 180 (216)
Q Consensus 164 ~~i~~l~~~l~~~~~~~ 180 (216)
+||+++|++|.+.+..+
T Consensus 188 ~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 188 HNVKELFEGIVRQVRLR 204 (211)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999987543
No 60
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=5e-33 Score=204.20 Aligned_cols=172 Identities=24% Similarity=0.479 Sum_probs=114.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC--CCCCccccceeeEEEEEEEEECCe--EEEEEEEeCCCccccccccccccccc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
...++|+|+|.+|+|||||+++|++. .+...+.++.+.++....+.+++. .+.+.|||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999988 777777777776777778888876 78999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC-CC
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT-NF 164 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 164 (216)
|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+....+..++++.+++..++.++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988765 57999999999999642456778889999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 027985 165 NVEQVFFSIAREIKQRLVES 184 (216)
Q Consensus 165 ~i~~l~~~l~~~~~~~~~~~ 184 (216)
|++++|++|.+.+.++..+.
T Consensus 178 gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999888765544
No 61
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=6.4e-32 Score=191.55 Aligned_cols=163 Identities=32% Similarity=0.456 Sum_probs=120.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.+||+|+|.+|+|||||+++|++....... ++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999977654332 2222222 45667888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (216)
||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++.+.++...++.++++||++|+|++++|++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS-SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc-ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 99999999999999998887653 35789999999999965 46678888899999999999999999999999999999
Q ss_pred HHHHHHH
Q 027985 174 AREIKQR 180 (216)
Q Consensus 174 ~~~~~~~ 180 (216)
.+.+.++
T Consensus 159 ~~~~~~~ 165 (166)
T 3q72_A 159 VRQIRLR 165 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988754
No 62
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=4.2e-32 Score=192.49 Aligned_cols=163 Identities=37% Similarity=0.668 Sum_probs=140.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|+|.+|+|||||+++|++..+...+.++.+... ...+.+++..+.+.|||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999888777767665444 3456788888899999999999988889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 9999999999999999988877654 4789999999999965 3457788899999999999999999999999999999
Q ss_pred HHHHHH
Q 027985 173 IAREIK 178 (216)
Q Consensus 173 l~~~~~ 178 (216)
|.+.+.
T Consensus 161 l~~~i~ 166 (168)
T 1u8z_A 161 LMREIR 166 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 63
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=2.3e-31 Score=192.82 Aligned_cols=168 Identities=37% Similarity=0.591 Sum_probs=134.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....++|+|+|.+|+|||||+++|++..+...+.++.+.. ....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 34577999999999999999999999988877666665533 34566778888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
+++|||+++..++..+..|+..+..... .+.|+++|+||+|+.+ ..+..++++.+++..++.++++||+++.|++++
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999888876543 4689999999999865 456788889999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027985 170 FFSIAREIKQRL 181 (216)
Q Consensus 170 ~~~l~~~~~~~~ 181 (216)
|++|.+.+.++.
T Consensus 174 ~~~l~~~~~~~~ 185 (190)
T 3con_A 174 FYTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 64
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=5.2e-32 Score=191.85 Aligned_cols=164 Identities=35% Similarity=0.607 Sum_probs=142.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|+|++|+|||||+++|++..+...+.++.+. .....+.+++..+.+.|||+||++.+..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 3589999999999999999999998887777776653 335667788888899999999999998888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..++.+.+++..+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc-cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 999999999999999988887654 35789999999999854 4556778888999999999999999999999999999
Q ss_pred HHHHHHH
Q 027985 173 IAREIKQ 179 (216)
Q Consensus 173 l~~~~~~ 179 (216)
|.+.+.+
T Consensus 160 l~~~~~~ 166 (167)
T 1kao_A 160 IVRQMNY 166 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9988753
No 65
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=6.4e-32 Score=191.56 Aligned_cols=162 Identities=35% Similarity=0.650 Sum_probs=140.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 368999999999999999999999888777777776544 3556677777899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEecCCCCCHHHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEY-GIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~ 171 (216)
|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++.. ++.++++||++|.|++++|+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc-cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 999999999999999988887653 45789999999999964 4556778888888887 78999999999999999999
Q ss_pred HHHHHH
Q 027985 172 SIAREI 177 (216)
Q Consensus 172 ~l~~~~ 177 (216)
+|.+.+
T Consensus 160 ~l~~~i 165 (167)
T 1c1y_A 160 DLVRQI 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998876
No 66
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-31 Score=195.77 Aligned_cols=167 Identities=36% Similarity=0.578 Sum_probs=143.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++. ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 34579999999999999999999999988877777776544 45567788889999999999887 67778889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC-CHHHH
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF-NVEQV 169 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l 169 (216)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|. |++++
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence 99999999999999999988887654 35789999999999965 35677888999999999999999999999 99999
Q ss_pred HHHHHHHHHHHH
Q 027985 170 FFSIAREIKQRL 181 (216)
Q Consensus 170 ~~~l~~~~~~~~ 181 (216)
|++|.+.+.++.
T Consensus 182 ~~~l~~~i~~~~ 193 (196)
T 2atv_A 182 FYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999887654
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.9e-32 Score=202.77 Aligned_cols=173 Identities=30% Similarity=0.498 Sum_probs=144.7
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
......++|+|+|.+|+|||||+++|++..+...+.++.+.......+... +..+.+.|||+||++.+...+..+++.+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 345678999999999999999999999988877777777666665555444 3347899999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+.+..++...++.++++||++|.|+++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN-RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL 164 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Confidence 9999999999999999999999999887776799999999999964 446777888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 027985 169 VFFSIAREIKQRLVE 183 (216)
Q Consensus 169 l~~~l~~~~~~~~~~ 183 (216)
+|++|.+.+.++...
T Consensus 165 l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 165 PFLHLARIFTGRPDL 179 (218)
T ss_dssp HHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHhccccc
Confidence 999999988655433
No 68
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=7.9e-32 Score=194.49 Aligned_cols=165 Identities=25% Similarity=0.547 Sum_probs=141.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999988777777776554 34567777788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhC-CcEEEE
Q 027985 92 LLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYG-IKFFET 158 (216)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~ 158 (216)
|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+. ...+..++++.+++.++ +.++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 67888887664 37899999999999642 24577888999999888 699999
Q ss_pred ecC-CCCCHHHHHHHHHHHHH
Q 027985 159 SAK-TNFNVEQVFFSIAREIK 178 (216)
Q Consensus 159 Sa~-~~~~i~~l~~~l~~~~~ 178 (216)
||+ +++|++++|++|.+.+.
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHH
T ss_pred eecCCCcCHHHHHHHHHHHHh
Confidence 999 68999999999998875
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2.6e-31 Score=194.44 Aligned_cols=165 Identities=33% Similarity=0.608 Sum_probs=142.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+.++. ..+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 456899999999999999999999999887777777765554 3467888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEE
Q 027985 92 LLVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFET 158 (216)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 158 (216)
|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.. +.+..+++..+++..++ .++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999999998 57777776654 378999999999996531 35677888899999887 89999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 027985 159 SAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~ 178 (216)
||++|+|++++|++|.+.+.
T Consensus 180 SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998765
No 70
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=3e-31 Score=191.39 Aligned_cols=164 Identities=31% Similarity=0.599 Sum_probs=142.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+..++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999999888777666665333 455678888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEEe
Q 027985 93 LVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETS 159 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (216)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. ...+..+++..+++..++ .++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 68888877654 7899999999998653 245677888889999987 999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 027985 160 AKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~ 178 (216)
|++|.|++++|++|.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHS
T ss_pred CCCccCHHHHHHHHHHHHh
Confidence 9999999999999998874
No 71
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=210.24 Aligned_cols=167 Identities=68% Similarity=1.129 Sum_probs=141.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 45678999999999999999999999999988888888888888889999988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (216)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++..++.++++||++|+|++++|
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~ 187 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc-cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999877666899999999999964 34455566778888889999999999999999999
Q ss_pred HHHHHHHH
Q 027985 171 FSIAREIK 178 (216)
Q Consensus 171 ~~l~~~~~ 178 (216)
++|.+.+.
T Consensus 188 ~~l~~~l~ 195 (199)
T 3l0i_B 188 MTMAAEIK 195 (199)
T ss_dssp HHHTTTTT
T ss_pred HHHHHHHH
Confidence 99987664
No 72
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=197.56 Aligned_cols=167 Identities=34% Similarity=0.597 Sum_probs=123.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+...+.++.+.. +...+.+++..+.+.|||+||++.+..++..+++.+|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 357999999999999999999999988877666666433 3456678888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEEe
Q 027985 93 LVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFETS 159 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S 159 (216)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. ..+..+++..+++..++ .++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999987 6888887664 468999999999996532 35677888999999997 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 027985 160 AKTNFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~~ 181 (216)
|++|.|++++|++|.+.+.+..
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999887543
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=6.7e-31 Score=185.83 Aligned_cols=161 Identities=37% Similarity=0.630 Sum_probs=140.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.++|+|+|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 5899999999999999999999988876666665533 345667788888999999999998888888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHAA-DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSI 173 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (216)
||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....+.++.+++..++.++++||+++.|++++|++|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999988876643 3689999999999865 4567788899999999999999999999999999999
Q ss_pred HHHHH
Q 027985 174 AREIK 178 (216)
Q Consensus 174 ~~~~~ 178 (216)
.+.+.
T Consensus 160 ~~~~~ 164 (166)
T 2ce2_X 160 VREIR 164 (166)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 74
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=2e-31 Score=194.37 Aligned_cols=172 Identities=16% Similarity=0.292 Sum_probs=129.1
Q ss_pred ccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 027985 5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83 (216)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 83 (216)
++..........+|+|+|.+|+|||||+++|++..+.. .+.++.+ .....+...+ +.+.|||+||++.+..++..
T Consensus 7 ~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~ 82 (199)
T 4bas_A 7 HHHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGR--VAFTVFDMGGAKKFRGLWET 82 (199)
T ss_dssp ---------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEETT--EEEEEEEECCSGGGGGGGGG
T ss_pred ccccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEeCC--EEEEEEECCCCHhHHHHHHH
Confidence 34445567789999999999999999999999999877 6677766 3334445544 79999999999999999999
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCCCCCCHHHHH-HH-----HH
Q 027985 84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAA--------DNVNKILVGNKADMDESKRAVPTAKGQ-EL-----AD 149 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~-----~~ 149 (216)
+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.. ..+++. .+ ++
T Consensus 83 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~ 159 (199)
T 4bas_A 83 YYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK---TAAELVEILDLTTLMG 159 (199)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC---CHHHHHHHHTHHHHHT
T ss_pred HHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC---CHHHHHHHhcchhhcc
Confidence 99999999999999999999999999887755421 268999999999996532 122221 11 13
Q ss_pred HhCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027985 150 EYGIKFFETSAKTNFNVEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 183 (216)
..++.++++||++|+|++++|++|.+.+.++..+
T Consensus 160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 160 DHPFVIFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp TSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred CCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 3567899999999999999999999998866443
No 75
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=4.4e-31 Score=194.05 Aligned_cols=165 Identities=35% Similarity=0.599 Sum_probs=136.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
+..++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+..++..+.+.|||+||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45789999999999999999999999887777777665544 34678888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEEe
Q 027985 93 LVYDVTDESSFNNI-RNWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFETS 159 (216)
Q Consensus 93 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S 159 (216)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.. ..+..++...++...++ .++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 67877777654 478999999999996531 34677788889988887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 027985 160 AKTNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~ 179 (216)
|++|.|++++|++|.+.+.+
T Consensus 181 A~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988763
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=1.3e-31 Score=195.12 Aligned_cols=168 Identities=22% Similarity=0.309 Sum_probs=136.0
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCc-----------cccceeeEEEEEEE-EECCeEEEEEEEeCCCcccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTS-----------FITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERF 77 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~ 77 (216)
...+..+||+|+|.+|+|||||++.+.+. +... ..++.+.++....+ .+++..+.+.|||+||++.+
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 34567899999999999999999766554 3333 23444444444334 55667789999999999999
Q ss_pred ccccccccccccEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh
Q 027985 78 RTITTAYYRGAMGILLVYDVT------DESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY 151 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 151 (216)
...+..+++.+|++|+|||++ +.+++..+..|+..+.. ...+.|+++|+||+|+.+ .+..++++.+++..
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPE 163 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT---CCCHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc---ccCHHHHHHHHHhc
Confidence 999999999999999999999 45677777778777632 335789999999999955 37788899999999
Q ss_pred CC-cEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 027985 152 GI-KFFETSAKTNFNVEQVFFSIAREIKQRLV 182 (216)
Q Consensus 152 ~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (216)
++ .++++||++|+|++++|++|.+.+.++..
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 98 99999999999999999999999987654
No 77
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5.4e-31 Score=187.53 Aligned_cols=162 Identities=30% Similarity=0.476 Sum_probs=138.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 358999999999999999999999888766666655443 3445677777899999999999888888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (216)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ...+...+.+.++...++.++++||++|.|++++|+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence 9999999999999999888776532 3689999999999854 345677788888899999999999999999999999
Q ss_pred HHHHHH
Q 027985 172 SIAREI 177 (216)
Q Consensus 172 ~l~~~~ 177 (216)
+|.+.+
T Consensus 160 ~l~~~~ 165 (172)
T 2erx_A 160 ELLNLE 165 (172)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 998765
No 78
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=1.5e-31 Score=198.41 Aligned_cols=168 Identities=30% Similarity=0.621 Sum_probs=145.6
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 88 (216)
.......++|+|+|.+|+|||||+++|+...+...+.++.+.+.....+.+++..+.+.|||+||++.+..++..+++.+
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34567789999999999999999999887777677777777778888888888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 89 MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
|++|+|||++++.++..+..|+..+..... +.|+++|+||+|+.+.. . ......+++..++.++++||++|.|+++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK--V-KAKSIVFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCS--S-CGGGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCcccccc--c-cHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999999987754 78999999999996522 2 2255667888899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027985 169 VFFSIAREIKQR 180 (216)
Q Consensus 169 l~~~l~~~~~~~ 180 (216)
+|++|.+.+...
T Consensus 165 l~~~l~~~l~~~ 176 (221)
T 3gj0_A 165 PFLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999988644
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=1.1e-31 Score=193.17 Aligned_cols=164 Identities=32% Similarity=0.646 Sum_probs=125.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.|||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45699999999999999999999998887766666543332 23445666678899999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC---------CCCHHHHHHHHHHhCC-cEEEEecC
Q 027985 93 LVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESKR---------AVPTAKGQELADEYGI-KFFETSAK 161 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (216)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+... .+..+++..+++..++ .++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999997 68888877654 789999999999855322 2467788889999996 99999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027985 162 TNFNVEQVFFSIAREIK 178 (216)
Q Consensus 162 ~~~~i~~l~~~l~~~~~ 178 (216)
+|+|++++|++|.+.+.
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988763
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=3.5e-30 Score=187.18 Aligned_cols=167 Identities=28% Similarity=0.432 Sum_probs=134.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCC--CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccccc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAM 89 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 89 (216)
+..+||+|+|.+|+|||||+++|++.. +...+ ++.+.+++...+.+++..+.+.+||++|.+. ...++..+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999998633 33332 3345556667778899888999999999776 4556677788899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
++++|||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++.+.++...++.++++||++|.||++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE 161 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc-cccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence 9999999999999999999988776643 34789999999999854 345677777888888889999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027985 169 VFFSIAREIKQRL 181 (216)
Q Consensus 169 l~~~l~~~~~~~~ 181 (216)
+|++|.+.+..+.
T Consensus 162 lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 162 LFEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999999886544
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=9.5e-31 Score=191.89 Aligned_cols=164 Identities=32% Similarity=0.599 Sum_probs=137.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+ +.....+.+++..+.+.|||+||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 45679999999999999999999999888777666664 44456667788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEE
Q 027985 92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFET 158 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 158 (216)
|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. ..+..+++..+++..++ .++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999997 7888887765 478999999999986532 23677888889999986 59999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 027985 159 SAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~ 177 (216)
||++|+|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 82
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1.3e-29 Score=185.09 Aligned_cols=169 Identities=50% Similarity=0.857 Sum_probs=147.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 56799999999999999999999999888888888877788888889998889999999999988888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
+|+|+.+..+++.+..|+..+......+.|+++|+||+|+.+ ......++++.++...++.++++|++++.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999988898877665555789999999999954 3456677888999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027985 173 IAREIKQRLV 182 (216)
Q Consensus 173 l~~~~~~~~~ 182 (216)
|.+.+.+...
T Consensus 162 l~~~~~~~~~ 171 (199)
T 2f9l_A 162 ILTEIYRIVS 171 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999876543
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.3e-30 Score=186.27 Aligned_cols=162 Identities=19% Similarity=0.340 Sum_probs=129.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCC-CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
.....++|+|+|.+|+|||||+++|++.. +...+.++.+ .....+.+++ +.+.|||+||++.+...+..+++.+|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 45567999999999999999999999887 4555556554 5556666666 68999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecC
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAA---DNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAK 161 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 161 (216)
++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ....+++..+.. ..++.++++||+
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD---AVTSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc---CCCHHHHHHHhChhhccCCceEEEEccCC
Confidence 99999999999999999999888876543 4789999999999954 334455555543 234689999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027985 162 TNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~ 179 (216)
+|+|++++|++|.+.+.+
T Consensus 170 ~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTBTHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999887743
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=3.9e-30 Score=183.09 Aligned_cols=158 Identities=22% Similarity=0.401 Sum_probs=125.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+|+|.+|+|||||+++|++..+.. +.++.+ .....+.+++ +.+.+||+||++.+...+..+++.+|++++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 45899999999999999999999887743 444444 4445566665 689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-----HHHhCCcEEEEecCCCCCHH
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQEL-----ADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 167 (216)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ....+... +...++.++++||++|+|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 999999999999988887775532 2478999999999996522 22222222 12234579999999999999
Q ss_pred HHHHHHHHHHHH
Q 027985 168 QVFFSIAREIKQ 179 (216)
Q Consensus 168 ~l~~~l~~~~~~ 179 (216)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988753
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.1e-29 Score=183.87 Aligned_cols=162 Identities=22% Similarity=0.402 Sum_probs=128.4
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....++|+|+|.+|+|||||+++|++..+...+.++.+.++. .+...+ +.+.|||+||++.+...+..+++.+|+
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSA 93 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCE
Confidence 3456899999999999999999999998887777777665543 345554 789999999999999989999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCC
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNF 164 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 164 (216)
+|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++..... ..++.++++||++|.
T Consensus 94 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 170 (188)
T 1zd9_A 94 IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA---LDEKELIEKMNLSAIQDREICCYSISCKEKD 170 (188)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC---CCHHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence 999999999999999999888776532 257899999999999652 22222222111 123578999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREIKQ 179 (216)
Q Consensus 165 ~i~~l~~~l~~~~~~ 179 (216)
|++++|++|.+.+.+
T Consensus 171 gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 171 NIDITLQWLIQHSKS 185 (188)
T ss_dssp THHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999887643
No 86
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=6.2e-30 Score=184.06 Aligned_cols=158 Identities=21% Similarity=0.313 Sum_probs=123.8
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 90 (216)
.....++|+|+|.+|+|||||+++|++..+ ..+.++.+. ....+.+++ +.+.|||+||++.+...+..+++.+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS--NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSS--SCEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCce--eeEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 455679999999999999999999998887 344444443 334556666 789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCC
Q 027985 91 ILLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNF 164 (216)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 164 (216)
+|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ....+++..... ..++.++++||++|.
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE---CMTVAEISQFLKLTSIKDHQWHIQACCALTGE 168 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc---CCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 999999999999999999888776542 34789999999999854 233344433321 234589999999999
Q ss_pred CHHHHHHHHHHH
Q 027985 165 NVEQVFFSIARE 176 (216)
Q Consensus 165 ~i~~l~~~l~~~ 176 (216)
|++++|++|.+.
T Consensus 169 gi~~l~~~l~~~ 180 (181)
T 2h17_A 169 GLCQGLEWMMSR 180 (181)
T ss_dssp THHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998754
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=5.5e-29 Score=179.72 Aligned_cols=160 Identities=23% Similarity=0.408 Sum_probs=128.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++.. ...+.++.+ .....+.+++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999887 556666655 3445566665 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNV 166 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 166 (216)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+. ...+++..... ..++.++++||++|+|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA---LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC---CCHHHHHHHhChhhccCCceEEEEeeCCCCCCH
Confidence 999999999999999988877654 2347899999999999652 22333333221 23468999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027985 167 EQVFFSIAREIKQR 180 (216)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (216)
+++|++|.+.+.++
T Consensus 168 ~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 168 LPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887643
No 88
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1.7e-28 Score=178.06 Aligned_cols=167 Identities=51% Similarity=0.897 Sum_probs=147.5
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
.+.++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.++
T Consensus 24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 34567899999999999999999999999988888888888888888999998888999999999988888888899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
++++|+|..+..+++.+..|+..+........|+++|+||+|+.+ ......++++.++...++.++++|++++.|++++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 182 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999888888877665555789999999999954 3456678888999999999999999999999999
Q ss_pred HHHHHHHH
Q 027985 170 FFSIAREI 177 (216)
Q Consensus 170 ~~~l~~~~ 177 (216)
|++|.+.+
T Consensus 183 ~~~l~~~i 190 (191)
T 1oix_A 183 FQTILTEI 190 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.4e-29 Score=184.75 Aligned_cols=155 Identities=21% Similarity=0.310 Sum_probs=120.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+++|++|+|||||+++|.+..+.. +.++.+. ....+.+++ +.+.+|||||++.+..++..+++.+|++++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHP--TSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCC--SCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCc--eeEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999877643 3444433 235666777 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----------------hCCcE
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE-----------------YGIKF 155 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 155 (216)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+ .+..++++.+... .++.+
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 99999999999999998887654 234789999999999954 4566777766542 23579
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q 027985 156 FETSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~ 176 (216)
+++||++|+|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998754
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=1.9e-30 Score=183.60 Aligned_cols=156 Identities=21% Similarity=0.408 Sum_probs=121.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 95 (216)
++|+|+|.+|+|||||+++|++..+.. +.|+.+ .....+...+ +.+.|||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877754 345544 3344455544 68999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCHHHH
Q 027985 96 DVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l 169 (216)
|+++++++..+..|+..+... ...+.|+++|+||+|+.+. ....++..... ..++.++++||++|.|++++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC---CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHH
Confidence 999999999999888877553 2347899999999999542 22222222111 12356999999999999999
Q ss_pred HHHHHHHHHH
Q 027985 170 FFSIAREIKQ 179 (216)
Q Consensus 170 ~~~l~~~~~~ 179 (216)
|++|.+.+.+
T Consensus 153 ~~~l~~~i~~ 162 (164)
T 1r8s_A 153 LDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=4e-29 Score=181.26 Aligned_cols=155 Identities=22% Similarity=0.296 Sum_probs=125.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
..++|+++|++|+|||||+++|.+..+.. +.++.+ .....+.+++ +.+.+||+||++.+...+..+++.+|++++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWH--PTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCS--CEEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCC--CCeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999887743 344444 3455677777 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH------------hCCcEEEEec
Q 027985 94 VYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE------------YGIKFFETSA 160 (216)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 160 (216)
|||++++++++.+..|+..+... ...+.|+++|+||+|+.+ .+..+++..+... .++.++++||
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 99999999999999998887653 234789999999999954 4555666555432 3457999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027985 161 KTNFNVEQVFFSIARE 176 (216)
Q Consensus 161 ~~~~~i~~l~~~l~~~ 176 (216)
++|+|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.5e-29 Score=181.73 Aligned_cols=159 Identities=21% Similarity=0.326 Sum_probs=124.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+. .+.++.+ .....+.+++ +.+.|||+||++.+...+..+++.+|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999987775 4455544 3344556666 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNV 166 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 166 (216)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ....+++..... ..++.++++||++|+|+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE---CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC---CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCH
Confidence 9999999999999999988886642 24789999999999954 233444444332 23468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027985 167 EQVFFSIAREIKQ 179 (216)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (216)
+++|++|.+.+..
T Consensus 166 ~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 166 CQGLEWMMSRLKI 178 (187)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987743
No 93
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2.8e-29 Score=180.66 Aligned_cols=161 Identities=20% Similarity=0.356 Sum_probs=125.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|++|+|||||+++|++..+ ..+.++.+ .....+.+++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999998776 34444444 3344556665 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----hCCcEEEEecCCCCCH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELADE-----YGIKFFETSAKTNFNV 166 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i 166 (216)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++...... .++.++++||++|+|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 9999999999999999988876543 357899999999998542 233444333321 2347999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027985 167 EQVFFSIAREIKQRL 181 (216)
Q Consensus 167 ~~l~~~l~~~~~~~~ 181 (216)
+++|++|.+.+.+++
T Consensus 168 ~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 168 TEGLDWLIDVIKEEQ 182 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987654
No 94
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=8.3e-30 Score=185.70 Aligned_cols=169 Identities=19% Similarity=0.240 Sum_probs=120.1
Q ss_pred cccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccc---
Q 027985 6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTIT--- 81 (216)
Q Consensus 6 ~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~--- 81 (216)
+.........+||+|+|.+|+|||||++++.+... .....+...........+. +..+.+.|||+||++.+....
T Consensus 11 ~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 89 (196)
T 3llu_A 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY 89 (196)
T ss_dssp ---------CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred CCCCcccCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence 44445677899999999999999999998877533 2222222222222222232 445789999999999876665
Q ss_pred ccccccccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------CCCCCHHHHHHHHH----
Q 027985 82 TAYYRGAMGILLVYDVTDE--SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES------KRAVPTAKGQELAD---- 149 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------~~~~~~~~~~~~~~---- 149 (216)
..+++.+|++|+|||+++. +++..+..|+..+.... .+.|+++|+||+|+.+. .+.+..+..+.+++
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 7899999999999999987 67777777777765443 47899999999998542 22344555666777
Q ss_pred HhCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985 150 EYGIKFFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
..++.++++||++ +|++++|+.|++.+
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 5678999999999 99999999998764
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=3.6e-28 Score=190.47 Aligned_cols=164 Identities=30% Similarity=0.577 Sum_probs=142.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+++|.+|+|||||+++|++..+...+.++... .....+.+++..+.+.|||+||++.+...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 34589999999999999999999998887776666653 34556778888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHhCC-cEEEEe
Q 027985 93 LVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES-----------KRAVPTAKGQELADEYGI-KFFETS 159 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (216)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. ...+..+++..+++..++ .++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999987 68777776654 7899999999998543 256778889999999997 999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 027985 160 AKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~ 178 (216)
|++|.|++++|++|.+.+.
T Consensus 311 a~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999998875
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=5.7e-30 Score=186.00 Aligned_cols=159 Identities=21% Similarity=0.385 Sum_probs=119.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+.. +.++.+ .....+...+ +.+.|||+||++.+...+..+++.+|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3457999999999999999999999887653 344444 4445556655 7899999999999998898999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCC
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFN 165 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 165 (216)
|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++..... ..++.++++||++|.|
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA---MPVSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 99999999999999999888775532 347899999999999542 22222222111 1235699999999999
Q ss_pred HHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIK 178 (216)
Q Consensus 166 i~~l~~~l~~~~~ 178 (216)
++++|++|.+.+.
T Consensus 178 i~~l~~~l~~~i~ 190 (192)
T 2b6h_A 178 LYDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988763
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=1.3e-28 Score=177.29 Aligned_cols=160 Identities=22% Similarity=0.390 Sum_probs=124.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
+...++|+++|++|+|||||+++|.+..+. .+.++.+ .....+.+++ +.+.+||+||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 356799999999999999999999987652 3344444 3444566665 6899999999999988889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCC
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFN 165 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 165 (216)
++|||+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++..... ..++.++++||++|+|
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 164 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTGEG 164 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCceEEEEccCCCCCC
Confidence 9999999999999999888777543 23478999999999996522 2223222211 1235799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIKQ 179 (216)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (216)
++++|++|.+.+.+
T Consensus 165 i~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 165 VQDGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887754
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=1.4e-29 Score=183.38 Aligned_cols=160 Identities=19% Similarity=0.341 Sum_probs=126.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+.. +.++.+ .....+..++ +.+.+||+||++.+...+..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999998877643 344444 3444556665 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HHhCCcEEEEecCCCCCH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELA-----DEYGIKFFETSAKTNFNV 166 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i 166 (216)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..+++.... ...++.++++||++++|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA---SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC---CHHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence 9999999999999988887775532 3478999999999995522 222222211 122457999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027985 167 EQVFFSIAREIKQR 180 (216)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (216)
+++|++|.+.+.++
T Consensus 172 ~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 172 VEGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988654
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=3.1e-31 Score=194.43 Aligned_cols=164 Identities=32% Similarity=0.604 Sum_probs=135.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.... ....+.+++..+.+.|||+||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 3567999999999999999999999888876666665433 344556667778899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHhCC-cEEEE
Q 027985 92 LLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDESK-----------RAVPTAKGQELADEYGI-KFFET 158 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 158 (216)
|+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.. ..+..+++..+++..++ .++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 9999999999999987 77777766544 68999999999996532 14556677778888887 89999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 027985 159 SAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~ 177 (216)
||++|+|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999988765
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=1.7e-29 Score=182.26 Aligned_cols=163 Identities=25% Similarity=0.437 Sum_probs=119.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC--CCCCccccceeeEEEEEEEEE---CCeEEEEEEEeCCCcccccccccccccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD--SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 89 (216)
.+||+|+|++|+|||||+++|++. .+...+.++.+.++....+.. ++..+.+.+||++|++.+..++..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 489999999999999999999985 455556677766665554443 234578999999999998888888999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC---HHHHHHHHHHhCCc----EEEEecC
Q 027985 90 GILLVYDVTDE-SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP---TAKGQELADEYGIK----FFETSAK 161 (216)
Q Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~ 161 (216)
++++|||++++ .++..+..|+..+.... .+.|+++|+||+|+.+. ..+. .+..+.+++..++. ++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDE-KQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCH-HHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccc-hhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 57889999998887654 36899999999998542 1111 23344555556765 9999999
Q ss_pred CCC-CHHHHHHHHHHHHHH
Q 027985 162 TNF-NVEQVFFSIAREIKQ 179 (216)
Q Consensus 162 ~~~-~i~~l~~~l~~~~~~ 179 (216)
++. +++++++.|.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 997 999999998887753
No 101
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=1.2e-27 Score=178.35 Aligned_cols=168 Identities=21% Similarity=0.178 Sum_probs=120.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc---------cccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITT 82 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~ 82 (216)
....++|+|+|.+|+|||||+++|++..+.....+..+.+.....+..++ +.+.||||||+.... ..+.
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 35679999999999999999999999887544445555555555556665 689999999983211 1122
Q ss_pred cccccccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHH---HHHHHHHHhC--CcE
Q 027985 83 AYYRGAMGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA---KGQELADEYG--IKF 155 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~--~~~ 155 (216)
.++..+|++|+|||++++.++. ....|+..+.... .+.|+++|+||+|+.+. ..+..+ ..+.++...+ +.+
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcCCCceE
Confidence 3467889999999999987654 2234555554432 36899999999999652 334433 4566677776 799
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027985 156 FETSAKTNFNVEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 183 (216)
+++||++|+|++++|++|.+.+.+...+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876554
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=3e-29 Score=189.84 Aligned_cols=172 Identities=25% Similarity=0.357 Sum_probs=125.1
Q ss_pred CccccCCCCCeeeEEEEEcCC---------CCcHHHHHHHHhc---CCCCCccccce-eeEEEEEE--------------
Q 027985 4 APARARADYDYLIKLLLIGDS---------GVGKSCLLLRFSD---DSFTTSFITTI-GIDFKIRT-------------- 56 (216)
Q Consensus 4 ~~~~~~~~~~~~~~i~v~G~~---------~sGKstli~~l~~---~~~~~~~~~~~-~~~~~~~~-------------- 56 (216)
.+++.....+..+||+|+|.+ |+|||||+++|++ ..+...+.++. +.++....
T Consensus 8 ~~~~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~ 87 (255)
T 3c5h_A 8 SSGRENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSR 87 (255)
T ss_dssp ---CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-
T ss_pred CCccCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccc
Confidence 445566667788999999999 9999999999998 55555555553 22222111
Q ss_pred EEECCeEEEEEEEe-----------------------CCCccccccccccccc---------------------cccEEE
Q 027985 57 IELDGKRIKLQIWD-----------------------TAGQERFRTITTAYYR---------------------GAMGIL 92 (216)
Q Consensus 57 ~~~~~~~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i 92 (216)
...++..+.+.||| ++|++.+..++..+++ ++|++|
T Consensus 88 ~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 167 (255)
T 3c5h_A 88 SLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL 167 (255)
T ss_dssp --------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEE
T ss_pred cccCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEE
Confidence 12455668999999 6667777777777777 799999
Q ss_pred EEEECCCh--hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-hCCcEEEEecCCCCCHHH
Q 027985 93 LVYDVTDE--SSFNNIRNWMRNIDQH-AADNVNKILVGNKADMDESKRAVPTAKGQELADE-YGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 93 ~v~d~~~~--~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~ 168 (216)
+|||++++ .+++.+..|+..+... ...+.|+++|+||+|+.+. ..+ ++++.++.. .++.++++||++|.|+++
T Consensus 168 lV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~-~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~e 244 (255)
T 3c5h_A 168 LGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE-RYI--RDAHTFALSKKNLQVVETSARSNVNVDL 244 (255)
T ss_dssp EEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH-HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHH
T ss_pred EEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc-HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHH
Confidence 99999998 9999999999888765 3347899999999998542 222 466667765 378999999999999999
Q ss_pred HHHHHHHHHH
Q 027985 169 VFFSIAREIK 178 (216)
Q Consensus 169 l~~~l~~~~~ 178 (216)
+|++|.+.+.
T Consensus 245 lf~~l~~~l~ 254 (255)
T 3c5h_A 245 AFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988763
No 103
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=4.9e-28 Score=173.36 Aligned_cols=161 Identities=21% Similarity=0.203 Sum_probs=121.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++ ..+.|||+||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 34578999999999999999999999888777766666666666677777 4688999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-------C--CcEEEEecCC
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-------G--IKFFETSAKT 162 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~ 162 (216)
|+|+|++++...... .++..+ ...+.|+++|+||+|+.+. ..+......... + +.++++||++
T Consensus 83 i~v~d~~~~~~~~~~-~~l~~~---~~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV-EAINHA---KAANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKT 154 (178)
T ss_dssp EEEEETTCCCCHHHH-HHHHHH---GGGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSS
T ss_pred EEEEECCCCCcHHHH-HHHHHH---HhCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEEecCC
Confidence 999999884322221 112222 2237899999999998652 223333222222 1 4799999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 027985 163 NFNVEQVFFSIAREIKQRLV 182 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~~~ 182 (216)
|+|++++|++|.+.+.....
T Consensus 155 ~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 155 KEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp SHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhhhhhcc
Confidence 99999999999988765443
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=6.2e-28 Score=171.11 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=115.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc-
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYYR- 86 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~- 86 (216)
..++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++ ..+.+|||||+..+.. +...+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 358999999999999999999998877666666666666666677776 5899999999877642 2344554
Q ss_pred -cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985 87 -GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN 165 (216)
Q Consensus 87 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (216)
.+|++++|+|+++.+. ...|+..+... +.|+++|+||+|+.+. ..+.. +.+.+++..++.++++||++|+|
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~SA~~~~~ 151 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKS-LGIEI-DVDKLEKILGVKVVPLSAAKKMG 151 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHH-TTCCC-CHHHHHHHHTSCEEECBGGGTBS
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccc-cChhh-HHHHHHHHhCCCEEEEEcCCCCC
Confidence 7999999999987543 34466666542 6899999999998532 22222 36778888899999999999999
Q ss_pred HHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREI 177 (216)
Q Consensus 166 i~~l~~~l~~~~ 177 (216)
++++|++|.+.+
T Consensus 152 v~~l~~~l~~~~ 163 (165)
T 2wji_A 152 IEELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=3.1e-28 Score=179.60 Aligned_cols=162 Identities=15% Similarity=0.238 Sum_probs=112.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCe-EEEEEEEeCCCcccccc-cccccccccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRT-ITTAYYRGAM 89 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d 89 (216)
....++|+|+|.+|+|||||+++|++..+...+.++ +.+.. .+.+++. .+.+.||||||++.+.. ++..+++.+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 345799999999999999999999998887666543 33333 3556543 47899999999998877 7888899999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHH-HHh--cCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHH-----------------
Q 027985 90 GILLVYDVTDES-SFNNIRNWMRNI-DQH--AADNVNKILVGNKADMDESKRA-VPTAKGQEL----------------- 147 (216)
Q Consensus 90 ~~i~v~d~~~~~-s~~~~~~~~~~l-~~~--~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~----------------- 147 (216)
++|+|||+++.. ++..+..++..+ ... ...+.|+++|+||+|+.+.... ...+.+...
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999999853 455555544433 321 2346899999999999653211 001111111
Q ss_pred ---------------HH-Hh--CCcEEEEecCCC------CCHHHHHHHHHHH
Q 027985 148 ---------------AD-EY--GIKFFETSAKTN------FNVEQVFFSIARE 176 (216)
Q Consensus 148 ---------------~~-~~--~~~~~~~Sa~~~------~~i~~l~~~l~~~ 176 (216)
+. .. ++.|++|||++| .||+++|++|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 11 567999999999 9999999999865
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.4e-28 Score=189.59 Aligned_cols=159 Identities=20% Similarity=0.392 Sum_probs=119.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 92 (216)
...++|+|+|.+|+|||||+++|++..+... .++.+ .....+...+ +.+.||||||++.+..++..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETT--EEEEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccc--eEEEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3468999999999999999999998887443 34444 3344455555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCCH
Q 027985 93 LVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFNV 166 (216)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 166 (216)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.. ..+.+..... ..++.++++||++|.||
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi 314 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGL 314 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc---CHHHHHHHhchhhhhcCCCEEEEEECCCCcCH
Confidence 9999999999999988877765432 3478999999999996522 2222222211 12346999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027985 167 EQVFFSIAREIKQ 179 (216)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (216)
+++|++|.+.+.+
T Consensus 315 ~el~~~l~~~l~~ 327 (329)
T 3o47_A 315 YEGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=6.2e-27 Score=181.53 Aligned_cols=162 Identities=21% Similarity=0.311 Sum_probs=124.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-----cccccccccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYYRG 87 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~ 87 (216)
..+||+++|.+|+|||||+++|++.... ....+..|.+.....+.+++ .+.+.|||+||++.+ ...+..+++.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 3589999999999999999999887332 12233333444444555544 379999999999887 6778888999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCC-CC----CCHHHHHHHHHHhC---CcEEE
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESK-RA----VPTAKGQELADEYG---IKFFE 157 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~-~~----~~~~~~~~~~~~~~---~~~~~ 157 (216)
+|++|+|||++++++++.+..|...+.... ..+.|+++|+||+|+.+.. +. +..++++.+++.++ +.+++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 999999999999999999877755543321 3479999999999986421 22 45577888888887 79999
Q ss_pred EecCCCCCHHHHHHHHHHHH
Q 027985 158 TSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~ 177 (216)
+||++ .++.++|..+++.+
T Consensus 161 tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTT
T ss_pred eeecC-ChHHHHHHHHHHHH
Confidence 99999 89999998877654
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=5.4e-26 Score=187.25 Aligned_cols=164 Identities=21% Similarity=0.405 Sum_probs=125.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 91 (216)
....++|+|+|.+|+|||||+++|++..+.. ..+|.+ .....+.+.+ +.+.||||+|++.+..++..+++.+|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccc--eeEEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 3457999999999999999999999888643 345544 4444555555 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HhCCcEEEEecCCCCC
Q 027985 92 LLVYDVTDESSFNNIRNWMRNIDQHA-ADNVNKILVGNKADMDESKRAVPTAKGQELAD-----EYGIKFFETSAKTNFN 165 (216)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 165 (216)
|+|||+++++++..+..|+..+.... ..++|+++|+||+|+.+. ....++..... ..++.++++||++|+|
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 470 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 470 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC---CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBT
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC---CCHHHHHHHhchhhhhcCCeEEEEEECCCCCC
Confidence 99999999999999999888875532 347899999999998542 22222222211 1224599999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 027985 166 VEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 166 i~~l~~~l~~~~~~~~~~ 183 (216)
|+++|++|.+.+.++..+
T Consensus 471 i~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 471 LYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp HHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999999887544433
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.1e-26 Score=167.79 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=124.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR 86 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~ 86 (216)
+..++|+|+|++|+|||||+++|++..+.....++.+.+.....+..++ ..+.+|||||+..+. .++..+++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 3568999999999999999999998776666667777777777777776 689999999987764 23444554
Q ss_pred --cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985 87 --GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF 164 (216)
Q Consensus 87 --~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (216)
.++++++|+|..+ ++....|+..+.. .+.|+++|+||+|+.+.. .+. ...+.+++..++.++++||++++
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSL-GIE-IDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHT-TCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccc-cch-HHHHHHHHHhCCCeEEEEecCCC
Confidence 4899999999965 4555666666654 368999999999985422 222 35677888889999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREIKQR 180 (216)
Q Consensus 165 ~i~~l~~~l~~~~~~~ 180 (216)
|++++|++|.+.+.+.
T Consensus 155 ~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 155 GIEELKKAISIAVKDK 170 (188)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999887543
No 110
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=4.8e-27 Score=167.65 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=115.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAY 84 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 84 (216)
..++|+|+|.+|+|||||+++|++.... ....++.+.++....+.+++ ..+.+|||||....... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3579999999999999999999987642 33445556666677778887 46899999997643211 1135
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF 164 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (216)
++.+|++++|+|++++.++.. ..|+..+......+.|+++|+||+|+.+.... ++...+..++++||++|+
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETLG--------MSEVNGHALIRLSARTGE 151 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCTTTCT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchhh--------hhhccCCceEEEeCCCCC
Confidence 789999999999998877653 46777776665557899999999998542211 112245689999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREIK 178 (216)
Q Consensus 165 ~i~~l~~~l~~~~~ 178 (216)
|++++|++|.+.+.
T Consensus 152 gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 152 GVDVLRNHLKQSMG 165 (172)
T ss_dssp THHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999987764
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=3.8e-27 Score=170.41 Aligned_cols=156 Identities=24% Similarity=0.304 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITTAY 84 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 84 (216)
++|+|+|.+|+|||||+++|++..+...+.++.+.... .+.+. .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999887777776654433 33333 589999999 55566666667
Q ss_pred ccc-ccEEEEEEECCChhhHHHH-HHHHHH--------H-HHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC
Q 027985 85 YRG-AMGILLVYDVTDESSFNNI-RNWMRN--------I-DQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI 153 (216)
Q Consensus 85 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------l-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 153 (216)
++. ++++++|+++.+..++..+ ..|... + ......+.|+++|+||+|+.+.. .+..+.+++.++.
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV----QEVINFLAEKFEV 151 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH----HHHHHHHHHHHTC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH----HHHHHHHHHHhhh
Confidence 776 7766666666666777665 445432 1 22223478999999999986522 5667888888886
Q ss_pred c-------EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985 154 K-------FFETSAKTNFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 154 ~-------~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (216)
. ++++||++|+|++++|++|.+.+.+..
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 4 799999999999999999999886543
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=2.1e-26 Score=174.24 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=122.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc------cccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------TAYY 85 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~ 85 (216)
....++|+|+|.+|+|||||+++|++..+.....++.+.+.....+...+ ..+.|||+||+..+...+ ..++
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 34679999999999999999999999877666667777777766777666 689999999987765432 3444
Q ss_pred --ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCC
Q 027985 86 --RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTN 163 (216)
Q Consensus 86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (216)
..+|++++|+|+++.+... .|+..+.. .+.|+++|+||+|+.+.. .+. .+...+++.++++++++||++|
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~-~i~-~~~~~l~~~lg~~vi~~SA~~g 151 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKT-GMK-IDRYELQKHLGIPVVFTSSVTG 151 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHT-TCC-BCHHHHHHHHCSCEEECCTTTC
T ss_pred hhcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCcc-chH-HHHHHHHHHcCCCEEEEEeeCC
Confidence 5899999999999865433 34444443 378999999999985422 222 2467788899999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 027985 164 FNVEQVFFSIAREIK 178 (216)
Q Consensus 164 ~~i~~l~~~l~~~~~ 178 (216)
.|++++|++|.+.+.
T Consensus 152 ~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 152 EGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhh
Confidence 999999999988653
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=2.4e-26 Score=161.85 Aligned_cols=150 Identities=20% Similarity=0.183 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTAYYRG 87 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 87 (216)
.+|+|+|.+|+|||||+++|.+..+. ....++.+.+.....+..++ ..+.|||+||.... ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988753 34445555566666777777 47899999998762 3344567889
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCH
Q 027985 88 AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNFNV 166 (216)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 166 (216)
+|++++|+|++++.+... .++..+... .+.|+++|+||+|+.+.. +++..++ ..++ .++++||++|.|+
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~-----~~~~~~~-~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE-----LYLGPLY-GLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG-----GGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch-----HhHHHHH-hCCCCCeEEEecccCCCh
Confidence 999999999987533322 222222222 268999999999996531 2333444 5666 8999999999999
Q ss_pred HHHHHHHHHHH
Q 027985 167 EQVFFSIAREI 177 (216)
Q Consensus 167 ~~l~~~l~~~~ 177 (216)
+++|++|.+.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998754
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=9.4e-27 Score=169.13 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=106.6
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI 80 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 80 (216)
.....++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++ .+.+||+|| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 455789999999999999999999998875444444433333334444554 699999999 5566666
Q ss_pred cccccccc---cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCH--HHHHH-HHHHhCCc
Q 027985 81 TTAYYRGA---MGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT--AKGQE-LADEYGIK 154 (216)
Q Consensus 81 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~-~~~~~~~~ 154 (216)
+..+++.+ |++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+.. .+.. +.+.. +....++.
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKG-KWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGG-GHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChH-HHHHHHHHHHHHHcccCCCc
Confidence 66777666 9999999999876665532 2222322 368999999999986522 1111 22222 22223578
Q ss_pred EEEEecCCCCCHHHHHHHHHHHH
Q 027985 155 FFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
++++||++|+|++++|++|.+.+
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEccCCCCHHHHHHHHHHHh
Confidence 99999999999999999998776
No 115
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=1.6e-26 Score=174.60 Aligned_cols=151 Identities=16% Similarity=0.144 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAYY 85 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 85 (216)
.+|+++|.+|+|||||+|+|++........++.+.+.....+.+++ ..+.|||+||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999999877667778888888888888887 4899999999876653 344455
Q ss_pred --ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCC
Q 027985 86 --RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTN 163 (216)
Q Consensus 86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (216)
+.+|++|+|+|+++.+....+..+ +. ..+.|+++|+||+|+.+... .......+.+.++++++++||++|
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~--~~~~~~~l~~~lg~~vi~~SA~~g 151 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRG--ISIDTEKLESLLGCSVIPIQAHKN 151 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTT--CEECHHHHHHHHCSCEEECBGGGT
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCC--cHHHHHHHHHHcCCCEEEEECCCC
Confidence 789999999999886554443332 22 23789999999999854221 122355677888999999999999
Q ss_pred CCHHHHHHHHHHH
Q 027985 164 FNVEQVFFSIARE 176 (216)
Q Consensus 164 ~~i~~l~~~l~~~ 176 (216)
.|++++|++|.+.
T Consensus 152 ~gi~el~~~i~~~ 164 (256)
T 3iby_A 152 IGIPALQQSLLHC 164 (256)
T ss_dssp BSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998765
No 116
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=3.6e-25 Score=171.62 Aligned_cols=162 Identities=18% Similarity=0.101 Sum_probs=126.6
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEEC-CeEEEEEEEeCCCccccc----------
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFR---------- 78 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~---------- 78 (216)
.....-.|+++|.+|+|||||+|+|++..+.. ...+..+..........+ + .++.||||||+....
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence 45567889999999999999999999988753 344445545555555555 4 689999999986543
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--CcEE
Q 027985 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFF 156 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~ 156 (216)
..+..+++.+|++++|+|++++.+......|+..+... +.|+++|+||+|+.. ......+....+.+..+ ..++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIG-PAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSS-SGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCC-CHHHHHHHHHHHHHhccCCCeEE
Confidence 44556788999999999999888888777777766653 689999999999863 23445666777777775 6899
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 027985 157 ETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
++||++|.|++++|++|.+.+.
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEeCCCCCCHHHHHHHHHHhCc
Confidence 9999999999999999988774
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=4.4e-26 Score=165.38 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=110.4
Q ss_pred CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 027985 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRT 79 (216)
Q Consensus 10 ~~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~ 79 (216)
......++|+|+|.+|+|||||+++|++..... ..++.+.+........+. .+.+||+|| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence 345677899999999999999999999887432 222222223333333443 588999999 555666
Q ss_pred ccccccccc---cEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHhC-
Q 027985 80 ITTAYYRGA---MGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADEYG- 152 (216)
Q Consensus 80 ~~~~~~~~~---d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~- 152 (216)
++..+++.+ |++++|+|+.+..... .+..|+ ... +.|+++|+||+|+.+.. .....+.++.++...+
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~---~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWM---KSL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HHT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHH---HHc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 666666655 9999999998753333 233332 222 68999999999986422 2233344555555534
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985 153 IKFFETSAKTNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 153 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (216)
+.++++||++|+|++++|++|.+.+.+
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 699999999999999999999988753
No 118
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=2.7e-26 Score=175.23 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=119.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccc----------ccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TTA 83 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~ 83 (216)
..++|+|+|.+|+|||||+|+|++........++.+.+.....+...+ ..+.||||||+..+... +..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 358999999999999999999999887667778888788777787776 47889999998776521 112
Q ss_pred c--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985 84 Y--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK 161 (216)
Q Consensus 84 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (216)
+ .+.+|++|+|+|+++.+....+.. .+... +.|+++|+||+|+.+... .......+.+.++++++++||+
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~---~l~~~---~~p~ivv~NK~Dl~~~~~--~~~~~~~l~~~lg~~~i~~SA~ 151 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTL---QLLEL---GIPCIVALNMLDIAEKQN--IRIEIDALSARLGCPVIPLVST 151 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHH---HHHHH---TCCEEEEEECHHHHHHTT--EEECHHHHHHHHTSCEEECCCG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHH---HHHhc---CCCEEEEEECccchhhhh--HHHHHHHHHHhcCCCEEEEEcC
Confidence 2 268999999999988655444333 33333 689999999999854221 1223567788889999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027985 162 TNFNVEQVFFSIAREIK 178 (216)
Q Consensus 162 ~~~~i~~l~~~l~~~~~ 178 (216)
+|.|++++|++|.+.+.
T Consensus 152 ~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKA 168 (274)
T ss_dssp GGHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999876653
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=2.6e-26 Score=190.56 Aligned_cols=164 Identities=24% Similarity=0.316 Sum_probs=121.8
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEE------EEEE--CCeEEEEEEEeCCCccccccccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIR------TIEL--DGKRIKLQIWDTAGQERFRTITT 82 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~i~D~~G~~~~~~~~~ 82 (216)
.....+||+++|.+|+|||||+++|++..+...+.++.+.++... .+.+ ++..+.+.|||+||++.+..++.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 456789999999999999999999999988777777776555533 1122 22347899999999999999999
Q ss_pred cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985 83 AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT 162 (216)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
.+++.+|++|+|+|+++. +.+..|+..+..+.. +.|+++|+||+|+.+ ...+..+.++.++...++.++++||++
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~ 191 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENP-SYNIEQKKINERFPAIENRFHRISCKN 191 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCT-TCCCCHHHHHHHCGGGTTCEEECCC--
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCccc-ccccCHHHHHHHHHhcCCceEEEecCc
Confidence 999999999999999765 455678888877654 689999999999965 455667788888888889999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~~~ 179 (216)
|.|+++++++|.+.+.+
T Consensus 192 g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 192 GDGVESIAKSLKSAVLH 208 (535)
T ss_dssp ---CTTHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHhc
Confidence 99999999999988754
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=6.4e-26 Score=172.58 Aligned_cols=153 Identities=19% Similarity=0.203 Sum_probs=114.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR- 86 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 86 (216)
+.++|+++|++|+|||||+++|++........++.+.+.....+ .. ...+.|||+||+..+. .++..++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 45899999999999999999999876555555666555444333 32 3589999999988765 33444554
Q ss_pred -cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985 87 -GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN 165 (216)
Q Consensus 87 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (216)
.+|++++|+|+++.+.. ..|...+.. .+.|+++|+||+|+.+.. .+. .....+++.++++++++||++|.|
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~-~~~-~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQ-GKK-INVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHT-TCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcC-CcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence 69999999999876543 344444444 378999999999985422 222 356778888899999999999999
Q ss_pred HHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREI 177 (216)
Q Consensus 166 i~~l~~~l~~~~ 177 (216)
++++|++|.+.+
T Consensus 151 i~el~~~i~~~~ 162 (272)
T 3b1v_A 151 VDQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH
Confidence 999999997754
No 121
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=6.4e-27 Score=180.23 Aligned_cols=158 Identities=18% Similarity=0.245 Sum_probs=117.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC---ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---ccccccccccE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMG 90 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 90 (216)
||+++|..|+|||||++++.+..... ...+|.+.++. .+ + ..++++||||+|++++.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~--~v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE--HF--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE--EE--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE--EE--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887664432 24555554443 22 2 237899999999999864 35788999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------CCCCHHHHHHHHHH----hCCcEEEE
Q 027985 91 ILLVYDVTDE--SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK------RAVPTAKGQELADE----YGIKFFET 158 (216)
Q Consensus 91 ~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~~~----~~~~~~~~ 158 (216)
+|+|||+++. +....+.+|+..+.... .+.|+++|+||+|+.+.. +.+..++++.+++. .++.+|++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999987 33344444455554443 479999999999996532 34556667777775 57899999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHH
Q 027985 159 SAKTNFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~~~ 181 (216)
||++ .+|.++|..+++.+.++.
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhH
Confidence 9998 589999999988765443
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=4.3e-25 Score=168.48 Aligned_cols=156 Identities=21% Similarity=0.167 Sum_probs=121.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY-- 85 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-- 85 (216)
..++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++ ..+.|||+||+..+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999999999999887667778888888888888877 4699999999877655 344444
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCC
Q 027985 86 RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFN 165 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (216)
..+|++++|+|+++.+ ....|+..+.... ..|+++|+||+|+.+... ... ....+.+.++++++++||++|.|
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~-~~~-~~~~l~~~lg~~~~~~Sa~~g~g 152 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKG-AKI-DIKKMRKELGVPVIPTNAKKGEG 152 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHT-CCC-CHHHHHHHHSSCEEECBGGGTBT
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccc-cHH-HHHHHHHHcCCcEEEEEeCCCCC
Confidence 6799999999998753 2223333343331 289999999999853211 111 26778888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027985 166 VEQVFFSIAREIK 178 (216)
Q Consensus 166 i~~l~~~l~~~~~ 178 (216)
++++|+++.+.+.
T Consensus 153 i~~l~~~i~~~~~ 165 (271)
T 3k53_A 153 VEELKRMIALMAE 165 (271)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=6.5e-24 Score=172.74 Aligned_cols=157 Identities=19% Similarity=0.152 Sum_probs=99.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAY 84 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 84 (216)
..++|+|+|.+|+|||||+|+|++... .....++.+.+.....+.+++ +.+.||||||+..+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 458999999999999999999998754 345566777777777788887 689999999987655333 346
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF 164 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (216)
++.+|++++|+|++++.++..+..+...+... . +.|+++|+||+|+.+... ...+.+.+.....++++||++|+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~-~~piIvV~NK~Dl~~~~~----~~~~~l~~~~~~~~i~vSAktg~ 383 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH-P-AAKFLTVANKLDRAANAD----ALIRAIADGTGTEVIGISALNGD 383 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T-TSEEEEEEECTTSCTTTH----HHHHHHHHHHTSCEEECBTTTTB
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C-CCCEEEEEECcCCCCccc----hhHHHHHhcCCCceEEEEECCCC
Confidence 78999999999999887765433333323222 2 689999999999865221 12233444434789999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREIK 178 (216)
Q Consensus 165 ~i~~l~~~l~~~~~ 178 (216)
|++++|++|.+.+.
T Consensus 384 GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 384 GIDTLKQHMGDLVK 397 (476)
T ss_dssp SHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988775
No 124
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=1.3e-24 Score=176.10 Aligned_cols=162 Identities=17% Similarity=0.160 Sum_probs=115.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------cccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTI 80 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~ 80 (216)
.+..++|+++|.+|+|||||+|+|++.... ....++.+.+.....+..++. .+.||||||+.. +...
T Consensus 172 ~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 249 (436)
T 2hjg_A 172 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 249 (436)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHH
Confidence 346799999999999999999999988763 455666777777777788874 699999999732 3222
Q ss_pred cc-cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHH-HHHHHHHH----hCCc
Q 027985 81 TT-AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTA-KGQELADE----YGIK 154 (216)
Q Consensus 81 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~----~~~~ 154 (216)
.. .+++.+|++++|+|++++.+.++. .|+..+.. .+.|+++|+||+|+.+.. ....+ ..+.+.+. .+++
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~l~~~~~~~ 324 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKD-ESTMKEFEENIRDHFQFLDYAP 324 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCC-TTHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcc-hHHHHHHHHHHHHhcccCCCCC
Confidence 22 367889999999999998777765 46555544 368999999999996532 22222 22222232 3579
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 155 FFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
++++||++|.|++++|+.+.+.+...
T Consensus 325 ~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 325 ILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998887654
No 125
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=4.5e-25 Score=163.58 Aligned_cols=165 Identities=12% Similarity=0.060 Sum_probs=107.9
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCC--CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc----------ccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFR 78 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~ 78 (216)
.....++|+|+|.+|+|||||+++|++... .....++.+.......+.. .....+.||||||.. .+.
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC-CCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 345679999999999999999999998863 3333444444433333331 122579999999943 233
Q ss_pred ccccccccc---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHHHHH----
Q 027985 79 TITTAYYRG---AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAKGQELADE---- 150 (216)
Q Consensus 79 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---- 150 (216)
.....+++. +|++++|+|+.+..+.. ...++..+.. .+.|+++|+||+|+.+.... ...+.+......
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 444455554 88899999998753322 2234444443 36899999999998542110 011122222222
Q ss_pred ---hCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 151 ---YGIKFFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 151 ---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
.++.++++||++|.|++++|++|.+.+...
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 346899999999999999999999888644
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=2.1e-23 Score=165.01 Aligned_cols=164 Identities=16% Similarity=0.168 Sum_probs=123.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---------ITTA 83 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~ 83 (216)
...++|+++|.+|+|||||+++|++........+..+.......+...+ ..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4678999999999999999999998775443444444455555555555 5899999999754211 1113
Q ss_pred ccccccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecC
Q 027985 84 YYRGAMGILLVYDVTDES--SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAK 161 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (216)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.+.. ..+....++...+++++++||+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~ 318 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE---NIKRLEKFVKEKGLNPIKISAL 318 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH---HHHHHHHHHHHTTCCCEECBTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH---HHHHHHHHHHhcCCCeEEEeCC
Confidence 445699999999998876 67777888888877554 68999999999985421 1244556666778899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 027985 162 TNFNVEQVFFSIAREIKQRLV 182 (216)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~~~ 182 (216)
+|+|+++++++|.+.+.....
T Consensus 319 ~g~gi~~l~~~i~~~l~~~~~ 339 (357)
T 2e87_A 319 KGTGIDLVKEEIIKTLRPLAE 339 (357)
T ss_dssp TTBTHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHh
Confidence 999999999999998865433
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=7.6e-24 Score=163.45 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=108.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTA 83 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 83 (216)
....+|+|+|.+|+|||||+|+|++..+.. ...+..+.......+..++ .++.||||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHH
Confidence 345679999999999999999999988743 3344444333333344444 6899999999765 3344456
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-C-CcEEEEec
Q 027985 84 YYRGAMGILLVYDVTDESSFNNIRNWM-RNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-G-IKFFETSA 160 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa 160 (216)
+++.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+.+.... +....+.+ + ..++++||
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~iSA 154 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE-----AMKAYHELLPEAEPRMLSA 154 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH-----HHHHHHHTSTTSEEEECCT
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH-----HHHHHHHhcCcCcEEEEeC
Confidence 789999999999998764433 3343 3444332 36899999999998542110 22223322 3 47899999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 027985 161 KTNFNVEQVFFSIAREI 177 (216)
Q Consensus 161 ~~~~~i~~l~~~l~~~~ 177 (216)
++|.|+++++++|.+.+
T Consensus 155 ~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 155 LDERQVAELKADLLALM 171 (301)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999988765
No 128
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.1e-24 Score=161.06 Aligned_cols=144 Identities=17% Similarity=0.294 Sum_probs=105.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC---ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc-
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG- 87 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 87 (216)
....++|+|+|++|+|||||+++|++..+.. .+.++.+.++ ..+.+.+||+||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4567999999999999999999999887654 2444433222 22579999999999988888888877
Q ss_pred ---ccEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCCCCCC------HHHHHHHHHHhCC
Q 027985 88 ---AMGILLVYDVT-DESSFNNIRNWMRNIDQH----AADNVNKILVGNKADMDESKRAVP------TAKGQELADEYGI 153 (216)
Q Consensus 88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~D~~~~~~~~~------~~~~~~~~~~~~~ 153 (216)
+|++|+|+|++ ++.++..+..|+..+... ...+.|+++|+||+|+.+.. .+. .+++..++...++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR-PPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC-CHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 888899888888777654 33579999999999996532 222 3446666677778
Q ss_pred cEEEEecCCCCC
Q 027985 154 KFFETSAKTNFN 165 (216)
Q Consensus 154 ~~~~~Sa~~~~~ 165 (216)
.++++||++|.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 899999998865
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=1.1e-23 Score=171.61 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=117.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCC-CCCccccceeeEEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI 80 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 80 (216)
....++|+++|.+++|||||+++|++.. ......++.+.+.....+..++. .+.|||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 4567999999999999999999999765 33455666666666667777774 899999999 4545444
Q ss_pred cc-cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh-----CCc
Q 027985 81 TT-AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY-----GIK 154 (216)
Q Consensus 81 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~ 154 (216)
.. .+++.+|++|+|+|+++..... ...|+..+.. .+.|+++|+||+|+.+. .....++....++.. +++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~---~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE---AGKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSCC-CSSHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH---cCCCEEEEEEChhcCCC-chHHHHHHHHHHHHhcccCCCCC
Confidence 33 3678899999999998753322 2344444444 36899999999999652 334445555555544 479
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985 155 FFETSAKTNFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (216)
++++||++|.|++++|+++.+.+.++.
T Consensus 345 ~~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 345 ILFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998876554
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=2.8e-24 Score=168.11 Aligned_cols=157 Identities=19% Similarity=0.240 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccccccccc---cc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYYR---GA 88 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~ 88 (216)
.+|+|+|.+++|||||+++|++........+..+.......+.+++. ..+.|||+||..+ +..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36889999999999999999987654333444444555556666643 4799999999543 3334444544 49
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--CcEEEEecC
Q 027985 89 MGILLVYDVTD---ESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETSAK 161 (216)
Q Consensus 89 d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 161 (216)
+++|+|+|+++ ..+++.+..|+..+..+.. ...|+++|+||+|+.+. .+..+.+.+.+. ..++++||+
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-----~e~~~~l~~~l~~~~~v~~iSA~ 312 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAV 312 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-----HHHHHHHHHHhhcCCCEEEEECC
Confidence 99999999998 7889999999988887652 47899999999998541 234566666666 689999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027985 162 TNFNVEQVFFSIAREIK 178 (216)
Q Consensus 162 ~~~~i~~l~~~l~~~~~ 178 (216)
+++|+++++++|.+.+.
T Consensus 313 tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 313 TREGLRELLFEVANQLE 329 (342)
T ss_dssp CSSTTHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999988874
No 131
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.90 E-value=1.8e-23 Score=170.94 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=115.4
Q ss_pred cccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCC-------CCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985 6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDDS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 6 ~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
+.+....+..++|+++|..++|||||+++|++.. +..+..++.|.+.....+.+++ ..+.|||+||++.+.
T Consensus 10 ~~~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~ 87 (482)
T 1wb1_A 10 EGRPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLI 87 (482)
T ss_dssp ---CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHH
T ss_pred CcchhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHH
Confidence 4445556778999999999999999999999876 3344455555555555566666 689999999999988
Q ss_pred cccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHh---
Q 027985 79 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADEY--- 151 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~--- 151 (216)
..+...++.+|++|+|+|+++ +++.+.+ ..+... ++|+++|+||+|+.+.. .....++++.+....
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~~---~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 160 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL 160 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHHc---CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc
Confidence 888889999999999999987 4444433 223322 67889999999996421 112234455555554
Q ss_pred -CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 152 -GIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 152 -~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
+++++++||++|+|+++++++|.+.+.
T Consensus 161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 161 KNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 478999999999999999999988775
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=1.2e-24 Score=174.47 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=115.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc-------cc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------TA 83 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~ 83 (216)
....++|+|+|..++|||||+++|++..+. ....++.+.+.....+.+.+. ..+.||||||+..+..+. ..
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 456899999999999999999999988763 445566666777777777764 389999999988766543 33
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCC
Q 027985 84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTN 163 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (216)
+++.+|++|+|+|+...+ ....|+..+... +.|+++|+||+|+.+.... +..+.+.+.+++.++++||++|
T Consensus 110 ~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~---~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE---ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT---HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH---HHHHHHHHHcCCCEEEEECCCC
Confidence 688899999999994332 334566666555 7899999999999653332 5666677777899999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 027985 164 FNVEQVFFSIAREIK 178 (216)
Q Consensus 164 ~~i~~l~~~l~~~~~ 178 (216)
.|++++|++|.+.+.
T Consensus 181 ~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 181 KGFDDIGKTISEILP 195 (423)
T ss_dssp TSTTTHHHHHHHHSC
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999999998874
No 133
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.90 E-value=9.8e-23 Score=160.85 Aligned_cols=164 Identities=16% Similarity=0.107 Sum_probs=111.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc---------cccccccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAY 84 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~ 84 (216)
....|+|+|.+|+|||||+|+|++........++.|.+.....+.+++ ..+.+|||+|... +...+ ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 334499999999999999999998877555566666677777888888 4789999999621 22222 24
Q ss_pred cccccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHh---CCcEEEEe
Q 027985 85 YRGAMGILLVYDVTDES--SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEY---GIKFFETS 159 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~S 159 (216)
+..+|++++|+|++++. ....+..|...+......+.|+++|+||+|+.+.........+..+.... +..++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 78899999999998876 55566666665655544578999999999985422100012233344554 23689999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 027985 160 AKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~ 180 (216)
|++++|+++++++|.+.+...
T Consensus 335 A~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhccc
Confidence 999999999999998877643
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=2.4e-23 Score=169.48 Aligned_cols=153 Identities=24% Similarity=0.267 Sum_probs=116.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc-ccccc--------cccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-RFRTI--------TTAY 84 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~--------~~~~ 84 (216)
.++|+|+|.+|+|||||+|+|++... .....++++.++....+.+++ ..+.||||||.. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999998764 345566677777777888887 579999999987 54321 2346
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF 164 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (216)
++.+|++|+|+|++++.+++... ++..+ .+.|+++|+||+|+.+. +..+++..+.. .+++++++||++|+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~---~~~~~~~~~~~-~~~~~i~iSAktg~ 390 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK---INEEEIKNKLG-TDRHMVKISALKGE 390 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC---CCHHHHHHHHT-CSTTEEEEEGGGTC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc---cCHHHHHHHhc-CCCcEEEEECCCCC
Confidence 78899999999999877765532 22222 26899999999999542 33444444432 33689999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREIKQ 179 (216)
Q Consensus 165 ~i~~l~~~l~~~~~~ 179 (216)
|+++++++|.+.+..
T Consensus 391 Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 391 GLEKLEESIYRETQE 405 (482)
T ss_dssp CHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998764
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=4.6e-22 Score=159.64 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=114.5
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEE-------EE---------EE---CCeEEEEEEEeC
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIR-------TI---------EL---DGKRIKLQIWDT 71 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~i~D~ 71 (216)
.....++|+++|.+++|||||+++|++............ ..... .+ .. ......+.||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAET-NIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEE-EEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcccc-ceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 455679999999999999999999998654331110000 00000 00 00 112268999999
Q ss_pred CCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHHHHH
Q 027985 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAKGQELADE 150 (216)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~ 150 (216)
||++.+...+...++.+|++|+|+|++++.+.....+++..+.... ..|+++|+||+|+.+.... ...+++..+...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999888899999999999999998766777777776665542 2589999999998652210 111222222222
Q ss_pred h---CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 151 Y---GIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 151 ~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
. +++++++||++|+|+++++++|.+.+.
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 2 468999999999999999999887653
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=1.4e-22 Score=164.32 Aligned_cols=151 Identities=24% Similarity=0.320 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cccccccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTAYY 85 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~ 85 (216)
.+|+|+|.||+|||||+|+|++.... ....++.|.+.....+.+++. .+.||||||.+.. ...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987753 456677777777788888884 6899999996542 23345678
Q ss_pred ccccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHHHHhCC-cEEEEecC
Q 027985 86 RGAMGILLVYDVTDESSFNN--IRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKG-QELADEYGI-KFFETSAK 161 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~ 161 (216)
+++|++++|+|+.++.+..+ +..|+ ... +.|+++|+||+|+... . .... ..+. ..++ .++++||+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l---~~~---~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~iSA~ 148 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFL---RKS---TVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIPVSAE 148 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHH---HHH---TCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEECBTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHH---HHc---CCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEEEecc
Confidence 99999999999987544332 22332 222 6899999999997421 1 1222 3343 4566 78999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027985 162 TNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~ 179 (216)
+|.|+++++++|.+.+.+
T Consensus 149 ~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 149 HNINLDTMLETIIKKLEE 166 (439)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccc
Confidence 999999999999988864
No 137
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=4.7e-22 Score=159.83 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=103.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCC---CCCccccceeeE--EEEEEEEE-------------C--C----eEEEEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS---FTTSFITTIGID--FKIRTIEL-------------D--G----KRIKLQ 67 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~---~~~~~~~~~~~~--~~~~~~~~-------------~--~----~~~~~~ 67 (216)
+...++|+++|..++|||||+++|++.. +..+..++.|.+ +....+.. + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3456999999999999999999998543 333444433332 22222211 1 1 136899
Q ss_pred EEeCCCccccccccccccccccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHH
Q 027985 68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTA 142 (216)
Q Consensus 68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~ 142 (216)
|||+||++.+...+...+..+|++|+|+|++++ ++.+.+. .+... . ..|+++|+||+|+.+... ....+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l-~-~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL-G-IDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT-T-CCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc-C-CCeEEEEEEccCCCCHHHHHHHHH
Confidence 999999999888777888899999999999853 4444432 22222 1 357999999999976432 22345
Q ss_pred HHHHHHHH---hCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 143 KGQELADE---YGIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 143 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
+++.+.+. .+++++++||++|+|+++|+++|.+.+.
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 56666654 2578999999999999999999887553
No 138
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=2e-22 Score=163.18 Aligned_cols=156 Identities=17% Similarity=0.105 Sum_probs=109.4
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCccccceeeEEEEEEEEE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDS-------------------------------FTTSFITTIGIDFKIRTIEL 59 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 59 (216)
.....++|+++|.+++|||||+++|+... ...+..++.+.+.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 44567999999999999999999995431 11223345566666666666
Q ss_pred CCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCC
Q 027985 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FN---NIRNWMRNIDQHAADNVN-KILVGNKADM 132 (216)
Q Consensus 60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~D~ 132 (216)
++ ..+.||||||++.+...+...++.+|++|+|+|+++... ++ ...+.+..+.. .+.| +++|+||+|+
T Consensus 93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD 167 (439)
T ss_pred CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence 65 589999999999998888889999999999999987532 11 12222222222 2566 8999999998
Q ss_pred CCCC-----CCCCHHHHHHHHHHhC------CcEEEEecCCCCCHHHHHH
Q 027985 133 DESK-----RAVPTAKGQELADEYG------IKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 133 ~~~~-----~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 171 (216)
.... .....+++..+.+..+ ++++++||++|+|++++++
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 5321 1112334445555554 4699999999999999765
No 139
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=2.8e-22 Score=161.29 Aligned_cols=164 Identities=16% Similarity=0.180 Sum_probs=111.6
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCC---CCCccccceeeEEEEEEEEE---------------C--C----eEE
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDDS---FTTSFITTIGIDFKIRTIEL---------------D--G----KRI 64 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~---------------~--~----~~~ 64 (216)
+..+...++|+++|..++|||||+++|++.. +..+..++.|.+.......+ + + ...
T Consensus 4 ~~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~ 83 (410)
T 1kk1_A 4 RKSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVR 83 (410)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEE
T ss_pred cccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCccccccc
Confidence 3456778999999999999999999998543 33344443333322222221 1 1 126
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CC
Q 027985 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AV 139 (216)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~ 139 (216)
.+.|||+||++.+.......+..+|++|+|+|+++. ++.+.+. .+.... ..|+++|+||+|+.+... ..
T Consensus 84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~ 157 (410)
T 1kk1_A 84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALE 157 (410)
T ss_dssp EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHH
T ss_pred EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHH
Confidence 899999999998887777788899999999999853 3444432 222221 357899999999865221 11
Q ss_pred CHHHHHHHHHH---hCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 140 PTAKGQELADE---YGIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
..++++.+.+. .+++++++||++|+|+++|+++|.+.+.
T Consensus 158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 22344445443 3578999999999999999999887553
No 140
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=3.9e-22 Score=165.96 Aligned_cols=158 Identities=25% Similarity=0.316 Sum_probs=110.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC--CCC-------------ccccceeeEEEEEEEEE---CCeEEEEEEEeCCCcc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDS--FTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQE 75 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~ 75 (216)
+..+|+|+|..++|||||+++|+... +.. +...+.+.......+.+ ++..+.++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 56799999999999999999997532 110 11122222222223333 4556899999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC--
Q 027985 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-- 153 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-- 153 (216)
.+...+...++.+|++|+|+|+++.........|+.... .++|+++|+||+|+.+.. .....+.+.+.++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~---~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD---PERVAEEIEDIVGIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc---HHHHHHHHHHHhCCCc
Confidence 999889999999999999999998766666666655443 268999999999996532 23345556666665
Q ss_pred -cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 154 -KFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 154 -~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
.++++||++|.|+++++++|.+.+.
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCC
Confidence 4999999999999999999987763
No 141
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.88 E-value=2.3e-22 Score=157.85 Aligned_cols=128 Identities=18% Similarity=0.191 Sum_probs=103.5
Q ss_pred EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCC
Q 027985 52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWMRNIDQH-AADN 120 (216)
Q Consensus 52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~ 120 (216)
.....+.+++ +.+.|||++|++.+...|..++++++++|+|||+++ .+++.....|+..+... ...+
T Consensus 183 i~~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~ 260 (353)
T 1cip_A 183 IVETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 260 (353)
T ss_dssp EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred eEEEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccC
Confidence 3344556655 789999999999999999999999999999999998 46788888888887653 2347
Q ss_pred CcEEEEEeCCCCCCCC--------------CCCCHHHHHHHHHH-----------hCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 121 VNKILVGNKADMDESK--------------RAVPTAKGQELADE-----------YGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 121 ~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
.|+++|+||+|+.+.. ..+..+++..++.. .++.+++|||+++.||+++|+++.+
T Consensus 261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 9999999999984211 13567788877762 4568999999999999999999999
Q ss_pred HHHHHH
Q 027985 176 EIKQRL 181 (216)
Q Consensus 176 ~~~~~~ 181 (216)
.+.+..
T Consensus 341 ~i~~~~ 346 (353)
T 1cip_A 341 VIIKNN 346 (353)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 887554
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=1e-22 Score=165.18 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=103.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAY 84 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 84 (216)
..++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++ ..+.||||||...+...+ ...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4689999999999999999999986542 44456666666666677777 578999999976543322 236
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCC
Q 027985 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNF 164 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (216)
++.+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+.+.... . ..+.+. .+..++++||++|+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~-~--~~~~~~--~~~~~i~iSAktg~ 369 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLI-T--SLEYPE--NITQIVHTAAAQKQ 369 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGS-T--TCCCCT--TCCCEEEEBTTTTB
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhh-H--HHHHhc--cCCcEEEEECCCCC
Confidence 788999999999998655544 33444332 3699999999999653221 1 111111 34689999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREIK 178 (216)
Q Consensus 165 ~i~~l~~~l~~~~~ 178 (216)
|+++++++|.+.+.
T Consensus 370 Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 370 GIDSLETAILEIVQ 383 (462)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988775
No 143
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=4.5e-22 Score=150.87 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=108.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCC-CCCccccc-eeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS-FTTSFITT-IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------- 81 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------- 81 (216)
....++|+|+|.+|+|||||+++|++.. +.....++ .+.......+..++ ..+.||||||+..+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 4457999999999999999999999877 44444444 45555555666766 589999999976543222
Q ss_pred ---ccccccccEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEe-CCCCCCCCCCCCH-------HHHHHHHH
Q 027985 82 ---TAYYRGAMGILLVYDVTDESSF-NNIRNWMRNIDQHAADNVNKILVGN-KADMDESKRAVPT-------AKGQELAD 149 (216)
Q Consensus 82 ---~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~ivv~n-K~D~~~~~~~~~~-------~~~~~~~~ 149 (216)
...++.+|++|+|+|+++.... ..+..++..+..... ..|+++|+| |+|+... .+.. ..++.+..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHHH
Confidence 2256889999999999862221 122223222211111 346666666 9998642 1111 23444666
Q ss_pred HhCCc---E--EEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 150 EYGIK---F--FETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 150 ~~~~~---~--~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
..+.. + +++||+++.|++++|++|.+.+...
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 66543 2 7899999999999999999988753
No 144
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=8.4e-22 Score=163.70 Aligned_cols=159 Identities=20% Similarity=0.301 Sum_probs=112.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC--CCCC-------------ccccceeeEEEEEEEEE---CCeEEEEEEEeCCCc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 74 (216)
+...+|+|+|..++|||||+++|+.. .+.. +...+.+.......+.+ ++..+.++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45789999999999999999999752 1110 01111222111122222 455689999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-
Q 027985 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI- 153 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 153 (216)
..+...+...++.+|++|+|+|+++.........|+.... .++|+++|+||+|+.+.. .....+.+.+.++.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~---~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD---VDRVKKQIEEVLGLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHTSCCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC---HHHHHHHHHHhhCCC
Confidence 9998888889999999999999998877777766655443 268999999999986532 22334555555565
Q ss_pred --cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 154 --KFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 154 --~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
.++++||++|.|++++|++|.+.+.
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 4899999999999999999987664
No 145
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.87 E-value=5.1e-24 Score=174.89 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=115.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 94 (216)
.++|+|+|.+++|||||+++|.+..+.....++.+.++....+..++. ..+.||||||++.+..++..+++.+|++|+|
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 578999999999999999999877665555556555554444444322 3799999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH---HHHh--CCcEEEEecCCCCCHHHH
Q 027985 95 YDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQEL---ADEY--GIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~l 169 (216)
+|+++........ ++..+. ..+.|+++|+||+|+.+............+ ...+ .++++++||++|.|++++
T Consensus 83 VDa~dg~~~qt~e-~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 83 VAADDGVMKQTVE-SIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp CBSSSCCCHHHHH-HHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EECCCCccHHHHH-HHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 9998854443322 222222 337899999999999654333222333222 1111 247999999999999999
Q ss_pred HHHHHHHHH
Q 027985 170 FFSIAREIK 178 (216)
Q Consensus 170 ~~~l~~~~~ 178 (216)
|++|...+.
T Consensus 159 le~I~~l~~ 167 (537)
T 3izy_P 159 AEATIALAE 167 (537)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 999987653
No 146
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=5.9e-21 Score=142.98 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=108.9
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCcccc--ceeeEEEEEEEEECCeEEEEEEEeCCCcc-----------cc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQE-----------RF 77 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~ 77 (216)
.....++|+|+|.+|+|||||+++|++..+.....+ +.+.......+.+++ ..+.||||||.. .+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 345679999999999999999999999887655544 455556666677777 479999999943 23
Q ss_pred ccccccccccccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC------HHHHHHHHH
Q 027985 78 RTITTAYYRGAMGILLVYDVTDESS--FNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP------TAKGQELAD 149 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~------~~~~~~~~~ 149 (216)
...+...++.+|++|+|+|+++... ...+..+...+.... ..|+++|+||+|+.+.. .+. .+.++.+.+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~--~~~~iiv~nK~D~~~~~-~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA--RSFMILIFTRKDDLGDT-NLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH--GGGEEEEEECGGGC-------------CHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc--cceEEEEEeCCccCCcc-cHHHHHHhchHHHHHHHH
Confidence 3334445678899999999875332 222222222222221 35899999999985422 111 246778888
Q ss_pred HhCCcEEEEecCCC-----CCHHHHHHHHHHHHHH
Q 027985 150 EYGIKFFETSAKTN-----FNVEQVFFSIAREIKQ 179 (216)
Q Consensus 150 ~~~~~~~~~Sa~~~-----~~i~~l~~~l~~~~~~ 179 (216)
..+..++.++...+ .++.++|+.+...+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88888888877644 6788888887776654
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=2.9e-21 Score=156.64 Aligned_cols=161 Identities=19% Similarity=0.170 Sum_probs=107.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT---------- 81 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------- 81 (216)
+..++|+|+|++|+|||||+|+|++... .....++.+.+.....+.+++. .+.+|||+|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 4569999999999999999999998765 2344556666666667788885 68999999975432211
Q ss_pred --ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HHHHH----hCCc
Q 027985 82 --TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ-ELADE----YGIK 154 (216)
Q Consensus 82 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~ 154 (216)
...++.+|++++|+|+.+..+..+. .+...+.. .+.|+++|+||+|+.+.. ....++.. .+... .+++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHR-EKRYDEFTKLFREKLYFIDYSP 330 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTG-GGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCch-hhHHHHHHHHHHHHhccCCCCc
Confidence 1245678999999999876555442 22222332 368999999999986522 22222222 22222 3468
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 155 FFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
++++||++|.|++++|+.+.+.+...
T Consensus 331 ~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 331 LIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999998877654
No 148
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.87 E-value=1.4e-21 Score=150.91 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=108.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeeEEEEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTA 83 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~ 83 (216)
...+|+|+|++|+|||||+|+|++..+.. ...+..+.......+..++ .++.+|||||+. .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 34579999999999999999999887632 2233333333333344444 589999999987 23444567
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCC
Q 027985 84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKT 162 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (216)
.++.+|++++|+|+.+ +.....|+..... ..+.|+++|+||+|+.. ......+.+..+.+..+. .++++||++
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCc-cHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 7899999999999976 2222233322222 23689999999999854 112223445555555565 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027985 163 NFNVEQVFFSIAREI 177 (216)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (216)
+.|++++++.|...+
T Consensus 159 g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 159 GLNVDTIAAIVRKHL 173 (301)
T ss_dssp TTTHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999988654
No 149
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=2.5e-21 Score=145.58 Aligned_cols=165 Identities=16% Similarity=0.112 Sum_probs=107.3
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccc--eeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITT--IGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTIT 81 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~ 81 (216)
....++|+|+|.+|+|||||+|+|++........+. .+.......+..++ ..+.||||||... +....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 356799999999999999999999988775443322 34444455566666 5899999999632 22222
Q ss_pred ccc----cccccEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCC-----CCHHHHHHHHH
Q 027985 82 TAY----YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA---ADNVNKILVGNKADMDESKRA-----VPTAKGQELAD 149 (216)
Q Consensus 82 ~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~-----~~~~~~~~~~~ 149 (216)
... .+.+|++|+|+|+++... ....++..+.... ..+.|+++++||.|+.+.... ...+.++.+.+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 222 388999999999975211 1122233333322 125799999999999542111 11244677778
Q ss_pred HhCCcEEEEecCC-----CCCHHHHHHHHHHHHHHH
Q 027985 150 EYGIKFFETSAKT-----NFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 150 ~~~~~~~~~Sa~~-----~~~i~~l~~~l~~~~~~~ 180 (216)
..+..++.+++.. +.|+++|++.|.+.+.++
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 8888888777654 578999999998887653
No 150
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=1.3e-22 Score=155.00 Aligned_cols=162 Identities=19% Similarity=0.223 Sum_probs=91.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-cc-------ccceeeEEEEEEEEECCeEEEEEEEeCCCcccc------
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF------ 77 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------ 77 (216)
+...++|+|+|.+|+|||||+|+|++..... .+ .++.+.+.....+..++..+.+.||||||....
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 4567999999999999999999988765533 33 455555665555555665579999999996321
Q ss_pred -cccc-------cccc-------------ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985 78 -RTIT-------TAYY-------------RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESK 136 (216)
Q Consensus 78 -~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~ 136 (216)
..+. ..++ ..+|+++++++.........-..++..+.. ++|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 1111 1112 237789999977652222222233333332 68999999999985311
Q ss_pred C-CCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985 137 R-AVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 137 ~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
. ......+.......++.++.+|+.+++|+++++++|.+.+
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 1 1112334445556788999999999999999999887654
No 151
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=1.9e-22 Score=163.43 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccccccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYY 85 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~ 85 (216)
..+|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++ ..+.||||||++ .+...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999999987653 34456666666666666655 479999999975 4455566778
Q ss_pred ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCC
Q 027985 86 RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSAKTNF 164 (216)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (216)
+.+|++|+|+|+.++.+..+ .++..+.. ..+.|+++|+||+|+.+..... ..+. ..+. .++++||++|.
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~~-----~~~~-~lg~~~~~~iSA~~g~ 150 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRANI-----YDFY-SLGFGEPYPISGTHGL 150 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----CC-----CSSG-GGSSCCCEECBTTTTB
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhhH-----HHHH-HcCCCCeEEEeCcCCC
Confidence 99999999999987655443 23333222 2378999999999985422111 1122 3454 78999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREIK 178 (216)
Q Consensus 165 ~i~~l~~~l~~~~~ 178 (216)
|++++++++.+.+.
T Consensus 151 gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 151 GLGDLLDAVAEHFK 164 (436)
T ss_dssp THHHHHHHHHHTGG
T ss_pred ChHHHHHHHHHhcC
Confidence 99999999988764
No 152
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.86 E-value=3.1e-21 Score=151.95 Aligned_cols=128 Identities=20% Similarity=0.198 Sum_probs=95.7
Q ss_pred EEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCC
Q 027985 53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWMRNIDQH-AADNV 121 (216)
Q Consensus 53 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~ 121 (216)
....+.+++ +.+.|||++|++.+...|..++++++++|+|||+++ .+++.....|+..+... ...+.
T Consensus 192 ~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~ 269 (362)
T 1zcb_A 192 HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV 269 (362)
T ss_dssp EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred EEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence 334455655 789999999999999999999999999999999998 67899998888888654 23578
Q ss_pred cEEEEEeCCCCCCCC--------------C-CCCHHHHHHHHH-----------HhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 122 NKILVGNKADMDESK--------------R-AVPTAKGQELAD-----------EYGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 122 p~ivv~nK~D~~~~~--------------~-~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
|+++|+||+|+.+.. . ....+++..++. ..++.++++||++++||+++|+++.+
T Consensus 270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 999999999984211 1 255677776652 34578899999999999999999999
Q ss_pred HHHHHHh
Q 027985 176 EIKQRLV 182 (216)
Q Consensus 176 ~~~~~~~ 182 (216)
.+.+...
T Consensus 350 ~i~~~~l 356 (362)
T 1zcb_A 350 TILHDNL 356 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876554
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=1.7e-21 Score=159.62 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=99.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC-------------------------------CCccccceeeEEEEEEEEECC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-------------------------------TTSFITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (216)
...++|+++|.+++|||||+++|+.... ..+..++.+.+.....+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3579999999999999999999975411 111223334444444444444
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHH------HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN------IRNWMRNIDQHAADNVNKILVGNKADMDES 135 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 135 (216)
..+.||||||++.+...+...++.+|++|+|+|++++.+... ..+.+..+.. .. ..|+++|+||+|+.+.
T Consensus 111 --~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~-~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 111 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG-IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp --CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TT-CCCEEEEEECGGGGTT
T ss_pred --ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cC-CCcEEEEEECcCcccc
Confidence 689999999999999889999999999999999998654322 1122222222 21 3569999999998652
Q ss_pred CCCCC---HHHHHHHHHHhC-----CcEEEEecCCCCCHHHH
Q 027985 136 KRAVP---TAKGQELADEYG-----IKFFETSAKTNFNVEQV 169 (216)
Q Consensus 136 ~~~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l 169 (216)
..... .+++..+....+ +.++++||++|+|++++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 21111 223333444443 57899999999999853
No 154
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=1e-21 Score=158.96 Aligned_cols=155 Identities=20% Similarity=0.140 Sum_probs=105.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC---CCc------------------------------cccceeeEEEEEEEE
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF---TTS------------------------------FITTIGIDFKIRTIE 58 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~---~~~------------------------------~~~~~~~~~~~~~~~ 58 (216)
....++|+++|.+++|||||+++|+.... ... ...+.+.+.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 45679999999999999999999975431 100 001222333333344
Q ss_pred ECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 138 (216)
.++ ..+.||||||++.+...+...++.+|++|+|+|+++... ....+++..+... . ..|+++|+||+|+.+....
T Consensus 101 ~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~-~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 101 TAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-G-IKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp CSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-T-CCEEEEEEECTTTTTSCHH
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-C-CCeEEEEEEcCcCCcccHH
Confidence 444 589999999999998888888999999999999987542 2233444444332 1 2368999999999652211
Q ss_pred ---CCHHHHHHHHHHhC-----CcEEEEecCCCCCHHHHHH
Q 027985 139 ---VPTAKGQELADEYG-----IKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 139 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 171 (216)
...++.+.+++..+ +.++++||++|+|++++++
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 12344556666666 6799999999999998544
No 155
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=3.3e-21 Score=151.25 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=94.5
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 027985 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWMRNIDQHA-ADNVNKILVGNKA 130 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~ 130 (216)
..+.+.|||++|++.+...|..++++++++|+|||++ +.+++..+..|+..+.... ..+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7789999999988886542 3578999999999
Q ss_pred CCCCCCC-CC-------------------CHHHHHHHHHH----------------hCCcEEEEecCCCCCHHHHHHHHH
Q 027985 131 DMDESKR-AV-------------------PTAKGQELADE----------------YGIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 131 D~~~~~~-~~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
|+.+... .+ ..+++..++.. ..+.++++||++++||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843111 01 13556666432 123468999999999999999999
Q ss_pred HHHHHHHhh
Q 027985 175 REIKQRLVE 183 (216)
Q Consensus 175 ~~~~~~~~~ 183 (216)
+.+.+...+
T Consensus 341 ~~I~~~~l~ 349 (354)
T 2xtz_A 341 ETLRRRNLL 349 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988765543
No 156
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=6.8e-21 Score=147.49 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=100.9
Q ss_pred EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCC
Q 027985 52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWMRNIDQHA-ADN 120 (216)
Q Consensus 52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~ 120 (216)
+....+..++ +.+.|||++|++.+...|..++++++++|+|+|++ +.+++.....|+..+.... ..+
T Consensus 157 i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~ 234 (327)
T 3ohm_A 157 IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN 234 (327)
T ss_dssp EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence 4445566665 79999999999999999999999999999999664 5677888878877775532 357
Q ss_pred CcEEEEEeCCCCCCCC---------------CCCCHHHHHHHHH----------HhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 121 VNKILVGNKADMDESK---------------RAVPTAKGQELAD----------EYGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 121 ~p~ivv~nK~D~~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
.|+++++||+|+.+.. .....+++..+.. ..++.++++||+++.||+++|..+.+
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 8999999999984311 1356777777743 34467899999999999999999999
Q ss_pred HHHHHH
Q 027985 176 EIKQRL 181 (216)
Q Consensus 176 ~~~~~~ 181 (216)
.+.+..
T Consensus 315 ~Il~~~ 320 (327)
T 3ohm_A 315 TILQLN 320 (327)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 987654
No 157
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.4e-21 Score=140.27 Aligned_cols=114 Identities=19% Similarity=0.351 Sum_probs=87.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC---ccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccccccc-
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG- 87 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 87 (216)
....++|+|+|.+|+|||||+++|++..+.. ...++.+.++ . .+.+.+||+||+..+...+..+++.
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------D--GSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------C--CTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------c--CCeEEEEECCCCchHHHHHHHHHHhh
Confidence 3567899999999999999999999887644 2222222211 2 2579999999998887777777766
Q ss_pred ---ccEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCC
Q 027985 88 ---AMGILLVYDVT-DESSFNNIRNWMRNIDQH----AADNVNKILVGNKADMDE 134 (216)
Q Consensus 88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~D~~~ 134 (216)
+|++|+|||++ +.+++..+..|+..+... ...+.|+++|+||+|+.+
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 89999999999 899999988888777554 234799999999999865
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=2.6e-22 Score=162.50 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=104.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC--CCCCc-----------------------------cccceeeEEEEEEEEECC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTTS-----------------------------FITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (216)
...++|+++|.+++|||||+++|+.. .+... ..++.+.+.....+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35689999999999999999999864 33211 123334444433444444
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHH-------HHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW-------MRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-------~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
..+.||||||++.+...+...++.+|++|+|+|+++ .+++.+..| +..+... ...|+++|+||+|+.+
T Consensus 84 --~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 84 --YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTE 158 (435)
T ss_dssp --CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCC
Confidence 689999999999998888889999999999999998 666644332 2222221 1236899999999965
Q ss_pred CCC-----CCCHHHHHHHHHHhC-----CcEEEEecCCCCCHHHHHH
Q 027985 135 SKR-----AVPTAKGQELADEYG-----IKFFETSAKTNFNVEQVFF 171 (216)
Q Consensus 135 ~~~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 171 (216)
... ....++++.+++..+ +.++++||++|+|+.+++.
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 211 122355666776665 6799999999999986654
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=1.3e-21 Score=157.12 Aligned_cols=148 Identities=17% Similarity=0.137 Sum_probs=103.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC--------CCCCc---------cccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD--------SFTTS---------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
....++|+++|.+++|||||+++|++. .+... ...+.+.+.....+...+ ..+.||||||+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~~~iiDtpG~ 85 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGH 85 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCS
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC--eEEEEEECCCh
Confidence 345799999999999999999999863 21111 123334344333333333 58999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--CCCHHHHHHHHHHh
Q 027985 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEY 151 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~ 151 (216)
+.+...+...++.+|++|+|+|+++... ....+++..+... +.| +++|+||+|+.+... +...++++.+.+..
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 9988888888999999999999987543 3344555555443 577 889999999864111 11123455666665
Q ss_pred C-----CcEEEEecCCCCC
Q 027985 152 G-----IKFFETSAKTNFN 165 (216)
Q Consensus 152 ~-----~~~~~~Sa~~~~~ 165 (216)
+ ++++++||++|.|
T Consensus 162 ~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 162 EFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp TSCTTTSCEEECCHHHHHH
T ss_pred cccccCCCEEEccHHHhhh
Confidence 5 6899999999987
No 160
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=5.5e-21 Score=157.38 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=85.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC------------------CC----ccccceeeEEEEEEEEECCeEEEEEEEe
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF------------------TT----SFITTIGIDFKIRTIELDGKRIKLQIWD 70 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (216)
....+|+|+|.+++|||||+++|+.... .. +..++.+.......+.+.+ +.+.|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 3568999999999999999999962111 00 0113334444445566666 6899999
Q ss_pred CCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
|||+..+...+...++.+|++|+|+|+++........-| ..+.. .++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 999999998899999999999999999986665555444 33332 3689999999999854
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=5.2e-21 Score=153.21 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=107.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------CCC---------ccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDS-------FTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 78 (216)
.++|+++|.+++|||||+++|++.. +.. +.....+.+.....+..++ ..+.||||||++.+.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADYV 80 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC--eEEEEEECCChHHHH
Confidence 5899999999999999999998631 110 1123334443333333333 589999999999988
Q ss_pred cccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--CCCHHHHHHHHHHhC---
Q 027985 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR--AVPTAKGQELADEYG--- 152 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~--- 152 (216)
..+...++.+|++|+|+|+++....+. .+++..+... ++| +++++||+|+.+... ....++++.+++..+
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 888888999999999999988543322 2333333332 678 688999999864211 112245566666665
Q ss_pred --CcEEEEecCCCCC----------HHHHHHHHHHHH
Q 027985 153 --IKFFETSAKTNFN----------VEQVFFSIAREI 177 (216)
Q Consensus 153 --~~~~~~Sa~~~~~----------i~~l~~~l~~~~ 177 (216)
++++++||++|.| +.++++.|.+.+
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999999764 778887776544
No 162
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=2.8e-21 Score=152.93 Aligned_cols=147 Identities=11% Similarity=0.075 Sum_probs=108.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEE
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 96 (216)
+|+++|.+++|||||+++|+ ....+.+.....+..++ ..+.||||||++.+.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 33334444444444444 579999999999987777778899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCCCCCC--HHHHHHHHHHhC---CcEEE--EecCC---CC
Q 027985 97 VTDESSFNNIRNWMRNIDQHAADNVNK-ILVGN-KADMDESKRAVP--TAKGQELADEYG---IKFFE--TSAKT---NF 164 (216)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~~~---~~~~~--~Sa~~---~~ 164 (216)
.+ .......+++..+... +.|. ++++| |+|+ + ..... .++++.+.+..+ +++++ +||++ ++
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~-~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-H-MHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-C-HHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-C-HHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 43 4445555665555443 5677 88899 9998 4 21111 134455554433 68999 99999 99
Q ss_pred CHHHHHHHHHHHHHHH
Q 027985 165 NVEQVFFSIAREIKQR 180 (216)
Q Consensus 165 ~i~~l~~~l~~~~~~~ 180 (216)
|++++++.|.+.+...
T Consensus 166 gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 166 GVDELKARINEVAEKI 181 (370)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcccc
Confidence 9999999999887654
No 163
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=2.8e-22 Score=163.42 Aligned_cols=156 Identities=17% Similarity=0.095 Sum_probs=92.3
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC--CCCC-----------------------------ccccceeeEEEEEEEEECC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTT-----------------------------SFITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 61 (216)
...++|+++|..++|||||+++|+.. .+.. +...+.|++.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45789999999999999999999742 1110 0112233333333445555
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC
Q 027985 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKR 137 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~ 137 (216)
..+.||||||++.|...+...++.+|++|+|+|+++.. +|+...++...+......++| +++|+||+|+.+...
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 58999999999999888888999999999999998752 222222222222222223677 899999999854211
Q ss_pred -----CCCHHHHHHHHHHh-------CCcEEEEecCCCCCHHHHH
Q 027985 138 -----AVPTAKGQELADEY-------GIKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 138 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~l~ 170 (216)
.....++..+.+.. ++.++++||++|+|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11223456666665 3569999999999998866
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=4.4e-20 Score=153.75 Aligned_cols=160 Identities=18% Similarity=0.131 Sum_probs=105.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEEC-----------C-----eEEEEEEEeCCCcccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELD-----------G-----KRIKLQIWDTAGQERF 77 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~~~i~D~~G~~~~ 77 (216)
..++|+|+|.+++|||||+++|++..+........+.+......... + ....+.||||||++.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 35789999999999999999998754422111111111111111110 0 0125999999999999
Q ss_pred ccccccccccccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCC------------CHH
Q 027985 78 RTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAV------------PTA 142 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~~ 142 (216)
..++...++.+|++|+|+|+++ +++++.+. .+.. .+.|+++++||+|+.+..... ...
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999999999999999999998 56655443 2222 378999999999985421100 000
Q ss_pred ----------HHHHHHHHhC---------------CcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 143 ----------KGQELADEYG---------------IKFFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 143 ----------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
+........+ ++++++||++|.|+++++++|...+...
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 0111111111 3799999999999999999999877643
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.83 E-value=1.7e-22 Score=164.58 Aligned_cols=153 Identities=19% Similarity=0.242 Sum_probs=107.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 93 (216)
...+|+++|.+++|||||+++|.+..+.....++.+.+.....+..++ ..+.||||||++.+..++...+..+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 347899999999999999999987655444334444333333344455 378999999999999999999999999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-CCCHHH--HHHHHHHhC--CcEEEEecCCCCC
Q 027985 94 VYDVTDE---SSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR-AVPTAK--GQELADEYG--IKFFETSAKTNFN 165 (216)
Q Consensus 94 v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~--~~~~~~~~~--~~~~~~Sa~~~~~ 165 (216)
|+|+++. ++.+.+ ..+.. .+.|+++++||+|+.+... .+..+. ...+...++ ++++++||++|.|
T Consensus 81 VVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 9999873 443332 22222 3689999999999964321 111110 000112222 6899999999999
Q ss_pred HHHHHHHHHH
Q 027985 166 VEQVFFSIAR 175 (216)
Q Consensus 166 i~~l~~~l~~ 175 (216)
++++|++|..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999999764
No 166
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.5e-21 Score=154.25 Aligned_cols=162 Identities=22% Similarity=0.327 Sum_probs=87.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccc--------cceeeEEEEEEEEECCeEEEEEEEeCCCc-------c
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFI--------TTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------E 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~ 75 (216)
....++|+|+|++|+|||||+++|++... ...+. ++.+.......+..++..+.+.+|||||. +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 35579999999999999999999876533 22221 34444443344455566678999999998 5
Q ss_pred ccccccc-------cccccc-------------cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 76 RFRTITT-------AYYRGA-------------MGILLVYDVTDESSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 76 ~~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
.+..++. .+++.+ ++++|+++.. ..++..+. .++..+ ..++|+|+|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLT 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCC
Confidence 5555544 344332 3455555432 23344333 233332 34789999999999864
Q ss_pred CCCCCCH--HHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 135 SKRAVPT--AKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 135 ~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
. ..+.. +.+..++...++.++++||+++.+ ++.|.++.+.+.+.
T Consensus 189 ~-~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 189 L-KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp H-HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 2 22222 455566666788999999999999 88888888877643
No 167
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.83 E-value=8.5e-20 Score=144.87 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=100.2
Q ss_pred EEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCCcE
Q 027985 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWMRNIDQH-AADNVNK 123 (216)
Q Consensus 55 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~p~ 123 (216)
..+.+++ +.+.|||++|++.+...|..++++++++|+|||+++ .+++..+..|+..+... ...+.|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 4455665 789999999999999999999999999999999998 88999999999888765 2357899
Q ss_pred EEEEeCCCCCCCCC--CC---------------------------CHHHHHHHH-----HH--------hCCcEEEEecC
Q 027985 124 ILVGNKADMDESKR--AV---------------------------PTAKGQELA-----DE--------YGIKFFETSAK 161 (216)
Q Consensus 124 ivv~nK~D~~~~~~--~~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~ 161 (216)
+||+||+|+.+... .+ ..+++..|+ +. ..+.++++||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999843111 01 134555553 22 13567899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 027985 162 TNFNVEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~~~~ 183 (216)
+++||+++|.++.+.+.+...+
T Consensus 368 d~~nV~~vF~~v~~~I~~~~l~ 389 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRMHLR 389 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988766544
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=6e-21 Score=159.80 Aligned_cols=155 Identities=15% Similarity=0.086 Sum_probs=104.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-------------------------------ccceeeEEEEEEEEECC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF-------------------------------ITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 61 (216)
...++|+++|.+++|||||+++|++....... .++.+.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 34789999999999999999999866332111 13444444444555554
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhH---HHHHHHHHHHHHhcCCC-CcEEEEEeCCCCCCCCC
Q 027985 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWMRNIDQHAADN-VNKILVGNKADMDESKR 137 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~~~~~~~~~l~~~~~~~-~p~ivv~nK~D~~~~~~ 137 (216)
..+.||||||++.+...+...++.+|++|+|+|++++... ....++...+......+ .|+++|+||+|+.+...
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 5899999999999998888999999999999999874211 00111222221111123 45899999999865221
Q ss_pred CC---CHHHHHHHHHHhC-----CcEEEEecCCCCCHHHH
Q 027985 138 AV---PTAKGQELADEYG-----IKFFETSAKTNFNVEQV 169 (216)
Q Consensus 138 ~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l 169 (216)
.. ....+..+....+ +.++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 11 1233444444444 58999999999999876
No 169
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.83 E-value=7e-22 Score=164.95 Aligned_cols=151 Identities=20% Similarity=0.175 Sum_probs=81.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCccccceeeEEEEEEEEEC
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS-------------------------------FTTSFITTIGIDFKIRTIELD 60 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (216)
....++|+|+|.+++|||||+++|+... ...+..++.|.+.....+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4467899999999999999999996321 111123444555554445444
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 027985 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SF---NNIRNWMRNIDQHAADNVN-KILVGNKADMD 133 (216)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~ 133 (216)
+ ..+.||||||++.+...+...++.+|++|+|+|++++. .+ ......+..+... ++| +|+|+||+|+.
T Consensus 254 ~--~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 K--KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred C--eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence 4 68999999999999988889999999999999997532 11 1111222222222 455 88999999986
Q ss_pred CCCCCCC---HHHHHHHH-HHhCC-----cEEEEecCCCCCHH
Q 027985 134 ESKRAVP---TAKGQELA-DEYGI-----KFFETSAKTNFNVE 167 (216)
Q Consensus 134 ~~~~~~~---~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 167 (216)
+...... ..++..+. +..++ +++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 5222111 22333333 33343 69999999999998
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.82 E-value=2.5e-21 Score=157.48 Aligned_cols=153 Identities=16% Similarity=0.113 Sum_probs=105.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC--CCCC-----------------------------ccccceeeEEEEEEEEECC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD--SFTT-----------------------------SFITTIGIDFKIRTIELDG 61 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 61 (216)
...++|+++|.+++|||||+++|++. .+.. +...+.+.+.....+..++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46799999999999999999999864 2211 0012334444434444444
Q ss_pred eEEEEEEEeCCCccccccccccccccccEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027985 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FN---NIRNWMRNIDQHAADNVN-KILVGNKADMDE 134 (216)
Q Consensus 62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~ 134 (216)
..+.||||||++.+...+...++.+|++|+|+|+++... ++ ...+++..+... +.| +++|+||+|+.+
T Consensus 85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVK 159 (458)
T ss_dssp --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGT
T ss_pred --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 689999999999998888889999999999999987532 21 222333322222 455 899999999963
Q ss_pred CCCC---CCHHHHHHHHHHhC-----CcEEEEecCCCCCHHHHH
Q 027985 135 SKRA---VPTAKGQELADEYG-----IKFFETSAKTNFNVEQVF 170 (216)
Q Consensus 135 ~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~ 170 (216)
.... ...++++.+++..+ ++++++||++|+|+.++.
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 2111 12344556666665 689999999999997653
No 171
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.82 E-value=3.2e-19 Score=138.59 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=100.0
Q ss_pred EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCC
Q 027985 52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWMRNIDQHA-ADN 120 (216)
Q Consensus 52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~ 120 (216)
+....+.+++ +.++|||++|++.+...|..++++++++|+|||++ +.+++.....|+..+.... ..+
T Consensus 151 i~~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~ 228 (340)
T 4fid_A 151 IHEYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKG 228 (340)
T ss_dssp CEEEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTT
T ss_pred eEEEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCC
Confidence 3444455554 78999999999999999999999999999999998 6788888888888876543 357
Q ss_pred CcEEEEEeCCCCCCC--------------CCCCCHHHHHHHHH-Hh--------------------------CCcEEEEe
Q 027985 121 VNKILVGNKADMDES--------------KRAVPTAKGQELAD-EY--------------------------GIKFFETS 159 (216)
Q Consensus 121 ~p~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~-~~--------------------------~~~~~~~S 159 (216)
.|+++++||+|+.+. ......+++..+.. .. .+.++++|
T Consensus 229 ~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~Ts 308 (340)
T 4fid_A 229 AVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTN 308 (340)
T ss_dssp SEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEEC
T ss_pred CeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEE
Confidence 899999999998321 11124555544443 22 26789999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhh
Q 027985 160 AKTNFNVEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~~~~ 183 (216)
|+++.||+.+|..+.+.+.+ ..+
T Consensus 309 A~dt~nv~~vF~~v~~~Il~-~l~ 331 (340)
T 4fid_A 309 ATDGSNIKRVFMLAVDVIMK-NMA 331 (340)
T ss_dssp TTCHHHHHHHHHHHHHHHHH-HHH
T ss_pred eeCcHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999988 443
No 172
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=3.2e-21 Score=157.05 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=99.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCC--------cccccccc
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG--------QERFRTIT 81 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~ 81 (216)
..+...+|+|+|.+|+|||||+|+|++..+. ....++.+.+.....+...+ ..+.|||||| ++.+...+
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQA 96 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHH
Confidence 3455689999999999999999999987653 33445555555555444444 5899999999 55566667
Q ss_pred ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEec
Q 027985 82 TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGI-KFFETSA 160 (216)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (216)
..+++.+|++|+|+|..+.... ...|+..+... .+.|+++|+||+|+.+... ....+. ..+. .++++||
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~-----~~~e~~-~lg~~~~~~iSA 166 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEMRA-----NIYDFY-SLGFGEPYPISG 166 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC--------------CCSG-GGSSSSEEECCT
T ss_pred HhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhhhh-----hHHHHH-HcCCCceEEeec
Confidence 7788999999999998764322 22333333222 4789999999999854211 111111 2232 5789999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 027985 161 KTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~ 178 (216)
++|.|+.++++.+.+.+.
T Consensus 167 ~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp TTCTTHHHHHHHHHTTGG
T ss_pred ccccchHHHHHHHHhhcc
Confidence 999999999999877653
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.81 E-value=6.9e-20 Score=159.60 Aligned_cols=160 Identities=19% Similarity=0.125 Sum_probs=106.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCC-------C---------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDS-------F---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
....++|+++|.+++|||||+++|++.. + ..+...+.+++. ..+.++.....+.||||||++
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdv--a~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINT--SHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CC--SCEEEECSSCEEEEEECCCHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEE--EEEEEcCCCEEEEEEECCChH
Confidence 4467999999999999999999998631 0 001112222222 222333233689999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCC--CCHHHHHHHHHHhC
Q 027985 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESKRA--VPTAKGQELADEYG 152 (216)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~ 152 (216)
.+.......++.+|++|+|+|+++.... ...+++..+... ++| +++|+||+|+.+.... ...++++.+.+..+
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 9988888889999999999999875322 233444444433 577 7899999999642111 12245566666665
Q ss_pred -----CcEEEEecCCC--------CCHHHHHHHHHHHH
Q 027985 153 -----IKFFETSAKTN--------FNVEQVFFSIAREI 177 (216)
Q Consensus 153 -----~~~~~~Sa~~~--------~~i~~l~~~l~~~~ 177 (216)
++++++||++| .|+.++++.|.+.+
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 58999999999 35777777665543
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=3e-20 Score=143.48 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=101.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCC------ccccce----------------------eeE------------
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTT------SFITTI----------------------GID------------ 51 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~------~~~~~~----------------------~~~------------ 51 (216)
....++|+|+|.+|+|||||+|+|++..+.+ ...|+. +.+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999999887632 122321 000
Q ss_pred -----------EEEEEEEECCeEEEEEEEeCCCccc-------------cccccccccccccEEE-EEEECCChhhHHHH
Q 027985 52 -----------FKIRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYYRGAMGIL-LVYDVTDESSFNNI 106 (216)
Q Consensus 52 -----------~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~ 106 (216)
.....+...+ ...+.||||||... +......+++.++.+| +|+|+++.......
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred hcccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0000011111 14799999999642 3344556777787666 79999875443333
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH--hC-CcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 107 RNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADE--YG-IKFFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 107 ~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
..++..+. ..+.|+++|+||+|+.+... ...+.++..... .+ ..++++||++|.|+++++++|.+.....
T Consensus 182 ~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~ 254 (299)
T 2aka_B 182 LKIAKEVD---PQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF 254 (299)
T ss_dssp HHHHHHHC---TTCSSEEEEEECGGGSCTTC-CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred HHHHHHhC---CCCCeEEEEEEccccCCCCc-hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHH
Confidence 33333332 34789999999999965322 122222210001 12 3678899999999999999988754433
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=8.9e-19 Score=132.86 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=87.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccc----
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR---- 86 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---- 86 (216)
....++|+|+|.+|+|||||+++|++... .....+..+.......+..++ ..+.||||||+..+......+++
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~ 110 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKG 110 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHH
Confidence 34679999999999999999999998875 233334444555556666777 58999999998877655444443
Q ss_pred -----cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027985 87 -----GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADN--VNKILVGNKADMDE 134 (216)
Q Consensus 87 -----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~D~~~ 134 (216)
.+|++++|++++.......-..|+..+....... .|+++|+||+|+.+
T Consensus 111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 7899999999876542222345666666554332 48999999999854
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.79 E-value=5.6e-19 Score=141.19 Aligned_cols=159 Identities=13% Similarity=0.160 Sum_probs=110.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccccc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGAM 89 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 89 (216)
.|+|+|++|+|||||++.|++........+..+.......+..++. ..+.+||+||... ...+...+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~-~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc-ceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 4789999999999999999887542222333333444445555542 4789999999643 11222222 34689
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 90 GILLVYDVTDESSFNNIRNWMRNIDQHAA--DNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
.+++++|++ ...+..+..|...+..+.. ...|.++|+||+|+... ...+.+....+..++.++.+||++++|++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 999999998 5667777777666655421 24789999999998542 22233444444557899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027985 168 QVFFSIAREIKQR 180 (216)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (216)
+++++|.+.+.+.
T Consensus 314 eL~~~i~~~l~~~ 326 (416)
T 1udx_A 314 ALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988643
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=3.5e-19 Score=130.55 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=98.0
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT 81 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~ 81 (216)
.....+|+++|++|+|||||+++|++..+.....++.+.......+.+++ .+.+||+||... +....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34567999999999999999999998764333333333333333344433 578999999742 12222
Q ss_pred cccc---ccccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHhC--C
Q 027985 82 TAYY---RGAMGILLVYDVTDESSFNN--IRNWMRNIDQHAADNVNKILVGNKADMDESK-RAVPTAKGQELADEYG--I 153 (216)
Q Consensus 82 ~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~--~ 153 (216)
..++ +.++++++++|+.++.+... +..|+ .. .+.|+++|+||+|+.... .+.....+..++...+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 2233 56899999999987644332 22222 22 268999999999975421 1111234445555444 4
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 154 KFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 154 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
.++++|++++.|+++++++|.+.+.
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHh
Confidence 7899999999999999999887653
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=2.3e-18 Score=146.20 Aligned_cols=120 Identities=19% Similarity=0.201 Sum_probs=86.0
Q ss_pred CCCCCeeeEEEEEcCCCCcHHHHHHHHhcC--CC------CC----------ccccceeeEEEEEEEEECCeEEEEEEEe
Q 027985 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDD--SF------TT----------SFITTIGIDFKIRTIELDGKRIKLQIWD 70 (216)
Q Consensus 9 ~~~~~~~~~i~v~G~~~sGKstli~~l~~~--~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (216)
....+...+|+|+|.+++|||||+++|+.. .+ .. +.....+.......+.+.+ +.+.|||
T Consensus 6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liD 83 (691)
T 1dar_A 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIID 83 (691)
T ss_dssp CCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEEC
T ss_pred cCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEE
Confidence 344567899999999999999999999832 11 00 0012233333344455555 6899999
Q ss_pred CCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
|||+..+...+...++.+|++|+|+|+++.........|.. +... ++|+++|+||+|+..
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---KVPRIAFANKMDKTG 143 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence 99999988888899999999999999998777666655543 3332 789999999999854
No 179
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.76 E-value=1.2e-17 Score=127.22 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=81.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccccc--------
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA-------- 83 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------- 83 (216)
...++|+|+|.+|+|||||+|+|++..+. ....+..+.......+..++ ..+.||||||...+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 45799999999999999999999987753 22233333333334445555 68999999998765433221
Q ss_pred -ccccccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027985 84 -YYRGAMGILLVYDVTDESSFNN-IRNWMRNIDQHAADN--VNKILVGNKADMDE 134 (216)
Q Consensus 84 -~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~--~p~ivv~nK~D~~~ 134 (216)
..+.+|+++||+|++.. .+.. -..|+..+....... .|+++|+||+|+.+
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 13479999999998653 2332 235666665554322 69999999999854
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.76 E-value=1.3e-17 Score=137.50 Aligned_cols=116 Identities=17% Similarity=0.121 Sum_probs=79.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC----------------------ccccceeeEEEEEEEEECCeEEEEEEEe
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT----------------------SFITTIGIDFKIRTIELDGKRIKLQIWD 70 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 70 (216)
....+|+|+|.+++|||||+++|+...... +...+.+.......+...+ +.+.|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 356899999999999999999998632100 0011112222233444555 6899999
Q ss_pred CCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
|||+..+...+...++.+|++|+|+|+.+..... ...++..+. ..++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 9999998888888999999999999998753322 122222222 23789999999999854
No 181
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=9.2e-19 Score=139.64 Aligned_cols=85 Identities=20% Similarity=0.212 Sum_probs=48.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEE---------------------ECC-eEEEEEEEeCCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIE---------------------LDG-KRIKLQIWDTAG 73 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G 73 (216)
++|+|+|.+|+|||||+|+|++........|+.|.+....... +++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998874434444444333333211 122 246899999999
Q ss_pred ccc----ccccc---ccccccccEEEEEEECCCh
Q 027985 74 QER----FRTIT---TAYYRGAMGILLVYDVTDE 100 (216)
Q Consensus 74 ~~~----~~~~~---~~~~~~~d~~i~v~d~~~~ 100 (216)
... ...+. ...++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 12222 2457899999999999874
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.76 E-value=3e-18 Score=145.59 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=105.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccee--------------eEE-------------------------
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTIG--------------IDF------------------------- 52 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~~--------------~~~------------------------- 52 (216)
...++|+|+|.+|+|||||+|+|++..+.+ ...+++. ..+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 357899999999999999999999877533 3333331 100
Q ss_pred --------------EEEEEEECCeE--EEEEEEeCCCccc---cccccccccccccEEEEEEECCChhhHHHHHHHHHHH
Q 027985 53 --------------KIRTIELDGKR--IKLQIWDTAGQER---FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNI 113 (216)
Q Consensus 53 --------------~~~~~~~~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l 113 (216)
....+..+... ..+.||||||... ....+..+++.+|++|+|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 00001111000 2589999999654 2344556788999999999999877777665554443
Q ss_pred HHhcCCCCcEEEEEeCCCCCCCCC--CCCHH-------HHHH-----HHHH--------hCCcEEEEecC----------
Q 027985 114 DQHAADNVNKILVGNKADMDESKR--AVPTA-------KGQE-----LADE--------YGIKFFETSAK---------- 161 (216)
Q Consensus 114 ~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~-------~~~~-----~~~~--------~~~~~~~~Sa~---------- 161 (216)
.. .+.|+++|+||+|+..... ....+ .+.. +... ....+|++||+
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 32 2678999999999854220 01100 1111 1111 12369999999
Q ss_pred ----CCCCHHHHHHHHHHHHHH
Q 027985 162 ----TNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 162 ----~~~~i~~l~~~l~~~~~~ 179 (216)
++.|++++++.|.+.+..
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHH
Confidence 999999999998887653
No 183
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.76 E-value=1.2e-17 Score=141.45 Aligned_cols=115 Identities=13% Similarity=0.195 Sum_probs=82.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-------------cc-----ccceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-------------SF-----ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 74 (216)
....+|+|+|+.|+|||||+++|++..... .+ ....+.......+...+ +.++||||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCc
Confidence 456789999999999999999998432210 00 11223333333444444 68999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027985 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD 133 (216)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~ 133 (216)
..+...+...++.+|++++|+|+.+.-.... ..++..+... +.|+++|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence 9988888889999999999999876533322 3444444433 68999999999985
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.75 E-value=7.1e-18 Score=143.30 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=85.0
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhc--CCCCC-----------c-----cccceeeEEEEEEEEECCeEEEEEEEeCC
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSD--DSFTT-----------S-----FITTIGIDFKIRTIELDGKRIKLQIWDTA 72 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~--~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 72 (216)
..+...+|+|+|.+|+|||||+++|+. ..+.. . ..+..+.......+.+++ +.+.|||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence 345678999999999999999999984 22110 0 012223333344455555 689999999
Q ss_pred CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
|+..+...+...++.+|++|+|+|+.+.........|. .+... +.|+++|+||+|+..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~---~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY---GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT---TCCEEEEEECTTSTT
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc---CCCEEEEEECCCccc
Confidence 99998888888999999999999999876666555443 33333 689999999999854
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.75 E-value=2.2e-17 Score=140.49 Aligned_cols=120 Identities=19% Similarity=0.141 Sum_probs=84.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCC--CCCc----------------cccceeeEEEEEEEEECC-----eEEEEE
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDS--FTTS----------------FITTIGIDFKIRTIELDG-----KRIKLQ 67 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~-----~~~~~~ 67 (216)
..+...+|+|+|..++|||||+++|+... +... .....+.......+.+.+ ..+.+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34567899999999999999999997431 1100 012223333333333332 337899
Q ss_pred EEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
||||||+..+...+...++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence 999999999888888899999999999999986554444333 22322 3689999999999854
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.74 E-value=4.9e-19 Score=136.62 Aligned_cols=163 Identities=21% Similarity=0.305 Sum_probs=83.3
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcC-CCCCccc--------cceeeEEEEEEEEECCeEEEEEEEeCCCc-------
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDD-SFTTSFI--------TTIGIDFKIRTIELDGKRIKLQIWDTAGQ------- 74 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------- 74 (216)
..+..++|+|+|++|+|||||+++|++. .++.... ++.........+..++....+.+||++|.
T Consensus 14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 4556799999999999999999998875 4333221 11111111122223344468999999997
Q ss_pred cccccccc-------ccccc-------------ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 75 ERFRTITT-------AYYRG-------------AMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 75 ~~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
+.+..+.. .+++. +++++|+.+.+. .+++.+. ...+... ....++++|+||.|+..
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAI-HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHH-TTTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCC
Confidence 33333332 22222 233444444322 1222222 1222222 23579999999999854
Q ss_pred CCC-CCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 135 SKR-AVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 135 ~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
... ....+.+..+++..++.++++||+++ |++++|.++.+.+.
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 211 12345777888889999999999999 99999999988875
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.74 E-value=1.1e-18 Score=138.13 Aligned_cols=155 Identities=11% Similarity=0.089 Sum_probs=98.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEE----------------------------------------
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFK---------------------------------------- 53 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 53 (216)
...+|+|+|.+|+|||||+++|++..+.+......+....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 4459999999999999999999997763322211110000
Q ss_pred --------------EEEEEECCeEEEEEEEeCCCcccc-------------ccccccccccccEEEEEEECCChhhHHHH
Q 027985 54 --------------IRTIELDGKRIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDVTDESSFNNI 106 (216)
Q Consensus 54 --------------~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 106 (216)
...+...+ ...+.||||||...+ ..+...+++.+|++|+|++..+.....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETT-SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HhcCCCCCcccceEEEEEeCCC-CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 00111111 136899999997664 344556788999999999875432221
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Q 027985 107 RNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQVFFS 172 (216)
Q Consensus 107 ~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (216)
..|+..+......+.|+++|+||+|+.+.. ....+.++.+....+..|+.++++.+.++++.+..
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKG-TDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTT-CCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCc-ccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 234444444445578999999999986532 23334444444455678999999987777665544
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=1.4e-17 Score=129.40 Aligned_cols=163 Identities=14% Similarity=0.115 Sum_probs=95.7
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc------ccceeeEEEE-------------------------------
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF------ITTIGIDFKI------------------------------- 54 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~------~~~~~~~~~~------------------------------- 54 (216)
....++|+|+|.+|+|||||+|+|++..+.+.. .++.......
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 345689999999999999999999998762221 1110000000
Q ss_pred ----------------------EEEEECCeEEEEEEEeCCCccc-------------cccccccccccccEEEEEEECCC
Q 027985 55 ----------------------RTIELDGKRIKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDVTD 99 (216)
Q Consensus 55 ----------------------~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~ 99 (216)
..+...+ ...+.||||||... +......+++.+|++++|+|..+
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCC-CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 0001111 14799999999653 33445567889999999999743
Q ss_pred hhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEec---CC---CCCHHHHHHH
Q 027985 100 ESSF-NNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSA---KT---NFNVEQVFFS 172 (216)
Q Consensus 100 ~~s~-~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~---~~~i~~l~~~ 172 (216)
.... .....+...+ ...+.|+++|+||+|+.+... ...+.++......+..++++++ .+ +.|+.++++.
T Consensus 180 ~~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 180 TDLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGT-DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp SCSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSC-CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred cchhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcch-HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 2211 1111222222 234789999999999865332 1222222111112245666655 44 7899999998
Q ss_pred HHHHHHH
Q 027985 173 IAREIKQ 179 (216)
Q Consensus 173 l~~~~~~ 179 (216)
+.+.+..
T Consensus 256 ~~~~~~~ 262 (315)
T 1jwy_B 256 EILYFKN 262 (315)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 8877754
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=131.87 Aligned_cols=162 Identities=18% Similarity=0.242 Sum_probs=81.7
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-Ccc-------ccceeeEEEEEEEEECCeEEEEEEEeCCCccccc----
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---- 78 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---- 78 (216)
..+..++|+|+|++|+|||||++.|++..+. ... .++.........+...+....+.+||++|.....
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 4556789999999999999999999987652 211 1122111111112223333579999999965431
Q ss_pred ---c------------------ccccccccccEEEEEEECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985 79 ---T------------------ITTAYYRGAMGILLVYDVTDE-SSFNNIR-NWMRNIDQHAADNVNKILVGNKADMDES 135 (216)
Q Consensus 79 ---~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 135 (216)
. +...+++++++.+++|..... .++..+. .|+..+. .+.|+|+|+||+|+..
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~- 181 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLT- 181 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCcc-
Confidence 1 123345566655555544332 2333332 4555443 2689999999999854
Q ss_pred CCCCCH--HHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027985 136 KRAVPT--AKGQELADEYGIKFFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 136 ~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
..++.. ..+..++...++.++++|+.++.++.++|..|...+
T Consensus 182 ~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 182 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 222222 566777788899999999999999998887776543
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=5.7e-18 Score=130.75 Aligned_cols=133 Identities=20% Similarity=0.206 Sum_probs=106.4
Q ss_pred HHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEECCChh-hHHHHH
Q 027985 30 CLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIR 107 (216)
Q Consensus 30 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 107 (216)
+|+.+++.+.|. ..+.|+.+..+. ..+..++ .+.|||+ ++.+..++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577788888887 778888884433 3322232 7899999 8889999999999999999999999987 788889
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhC--CcEEEEecCCCCCHHHHHHHHH
Q 027985 108 NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYG--IKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 108 ~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
.|+..+.. .++|+++|+||+|+.+.. . .++++.+++.++ +.++++||++|.|++++|..+.
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~-~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDED-D--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHH-H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCch-h--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 99887765 278999999999995421 1 144667777777 8999999999999999998764
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.67 E-value=7.9e-16 Score=120.62 Aligned_cols=146 Identities=15% Similarity=0.137 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeE---------------EEEEEEeCCCccccc--
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR-- 78 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~-- 78 (216)
++|+++|.||+|||||+|+|++........|+.|.+.....+.+++.. ..+.|||+||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 689999999999999999999877544444444444444445555421 479999999976532
Q ss_pred --cccc---cccccccEEEEEEECCCh----------hhHHHHHHHHHH-------------------------------
Q 027985 79 --TITT---AYYRGAMGILLVYDVTDE----------SSFNNIRNWMRN------------------------------- 112 (216)
Q Consensus 79 --~~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~------------------------------- 112 (216)
.+.. ..++.+|++++|+|+++. +.+.++..+..+
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 2222 347899999999999752 122222211111
Q ss_pred ---------HH-------------------Hh-cCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985 113 ---------ID-------------------QH-AADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT 162 (216)
Q Consensus 113 ---------l~-------------------~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
+. .+ ....+|+++++|+.|..- ........++.++...+..++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-ENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-SSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-cccHHHHHHHHHHHHcCCCEEEechHH
Confidence 10 00 112489999999999532 223345667777877889999999763
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.67 E-value=9.1e-16 Score=127.04 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=83.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCC----------------------CCCccccceeeEEEEEEEEECCeEEEEEEEeC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDS----------------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 71 (216)
..=+|+|+|..++|||||..+|+... ...+...+.++......+.+++ +.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 35679999999999999999985211 0123344445555566677777 68999999
Q ss_pred CCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
|||..|.......++-+|++|+|+|+.+.-......-|. .+..+ ++|.++++||+|...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHHT---TCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHHh---CCceEEEEecccchh
Confidence 999999999999999999999999998765555544443 33333 789999999999754
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.67 E-value=6.5e-17 Score=119.41 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=93.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeE--------------EEEEEEEEC----------------CeE
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGID--------------FKIRTIELD----------------GKR 63 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~----------------~~~ 63 (216)
...+|+|+|.+|+|||||+++|+..............+ .....+... ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45789999999999999999998652211100000000 001111110 012
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHH
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK 143 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 143 (216)
+.+.||||+|.-... ..+....+.+++|+|+..... ....+ .... +.|+++|+||+|+.+. .....+.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~---~~~~---~~~~iiv~NK~Dl~~~-~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKH---PEIF---RVADLIVINKVALAEA-VGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHC---HHHH---HTCSEEEEECGGGHHH-HTCCHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhh---hhhh---hcCCEEEEecccCCcc-hhhHHHH
Confidence 468899999851110 011125678999999876432 11111 1111 4688999999998531 1234555
Q ss_pred HHHHHHHhC--CcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027985 144 GQELADEYG--IKFFETSAKTNFNVEQVFFSIAREIKQR 180 (216)
Q Consensus 144 ~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (216)
+.......+ +.++++||++|.|+++++++|.+.+..+
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 555555543 6899999999999999999998877544
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.66 E-value=4.4e-18 Score=134.31 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=92.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCc------ccccee----------------------eE--------------
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTS------FITTIG----------------------ID-------------- 51 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~------~~~~~~----------------------~~-------------- 51 (216)
..++|+|+|.+|+|||||+++|++..+.+. ..|+.. .+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999876321 122210 00
Q ss_pred ---------EEEEEEEECCeEEEEEEEeCCCccc-------------cccccccccccc-cEEEEEEECCChhhHHHHHH
Q 027985 52 ---------FKIRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYYRGA-MGILLVYDVTDESSFNNIRN 108 (216)
Q Consensus 52 ---------~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~ 108 (216)
.....+...+ ...+.||||||... +..+...+++.. +++++|++++....-...
T Consensus 110 g~~~gi~~~~~~~~i~~~~-~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-- 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-- 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETT-CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--
T ss_pred ccCCCcccCceEEEEecCC-CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--
Confidence 0000111111 14799999999532 233444555554 455556676543222222
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHH--HHHHhC-CcEEEEecCCCCCHHHHHHHHHHH
Q 027985 109 WMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE--LADEYG-IKFFETSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 109 ~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (216)
...+......+.|+++|+||+|+.+.... ....++. +....+ ..++.+||+++.|++++++++.+.
T Consensus 187 -~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 187 -LKVAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp -HHHHHHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred -HHHHHHhCcCCCceEEEeccccccCcchh-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 22233333457899999999999653221 1111110 001123 257889999999999999988763
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.66 E-value=4.6e-17 Score=128.52 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=68.7
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHH
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK 143 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 143 (216)
+.+.||||||... .....+..+|++++|+|....+....+.. . ....|+++|+||+|+.+.. . ....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~-------~-~~~~p~ivVlNK~Dl~~~~-~-~~~~ 238 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK-------G-VLELADIVVVNKADGEHHK-E-ARLA 238 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT-------T-SGGGCSEEEEECCCGGGHH-H-HHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH-------h-HhhcCCEEEEECCCCcChh-H-HHHH
Confidence 5799999999532 22334588999999999876544322211 0 1135889999999984311 1 1111
Q ss_pred HHHHHHH---h-------CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985 144 GQELADE---Y-------GIKFFETSAKTNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 144 ~~~~~~~---~-------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (216)
...+... . +.+++++||++|+|+++++++|.+.+..
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1222222 2 4689999999999999999999888765
No 196
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.64 E-value=6.3e-15 Score=116.15 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=103.9
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------cccccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAY 84 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~ 84 (216)
+....+|+++|.|++|||||+|+|++........|+.|.+.....+.+++ .++.|+|+||..... ......
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 34457899999999999999999999887777788889999999999988 589999999953211 112235
Q ss_pred cccccEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC-------CCCCCCHHHHHHHHHHhCCcE
Q 027985 85 YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDE-------SKRAVPTAKGQELADEYGIKF 155 (216)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~~~~~~~~ 155 (216)
++.+|++++|+|+.++.. ........+.... -...|.++++||.|... .......++++.+.....+..
T Consensus 147 i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~ 224 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINS 224 (376)
T ss_dssp HHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCS
T ss_pred HHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccC
Confidence 678999999999998632 2222223332221 12468889999999632 123355666666666655432
Q ss_pred EEEecCCCCCHHHHH
Q 027985 156 FETSAKTNFNVEQVF 170 (216)
Q Consensus 156 ~~~Sa~~~~~i~~l~ 170 (216)
-++--..+...+++.
T Consensus 225 kpv~~~~nv~eddl~ 239 (376)
T 4a9a_A 225 AEIAFRCDATVDDLI 239 (376)
T ss_dssp EEEEECSCCCHHHHH
T ss_pred CCeeecccCCHHHHH
Confidence 333333344445443
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.63 E-value=4.8e-16 Score=134.60 Aligned_cols=120 Identities=19% Similarity=0.207 Sum_probs=86.1
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCC--C--------------CccccceeeEEEEEEEEE--------------C
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSF--T--------------TSFITTIGIDFKIRTIEL--------------D 60 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------------~ 60 (216)
..+...+|+|+|..++|||||+++|+.... . .+.....++......+.+ +
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 345678999999999999999999975411 0 011121222222222222 3
Q ss_pred CeEEEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
+..+.+.||||||+..+...+...++.+|++|+|+|+.+..+......|.... . .++|+++|+||+|+..
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcch
Confidence 34689999999999999999999999999999999999887777765554433 2 2689999999999853
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.63 E-value=3.7e-15 Score=117.17 Aligned_cols=103 Identities=13% Similarity=0.106 Sum_probs=62.3
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHH
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK 143 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 143 (216)
+.+.|+||+|.... .......+|++++|+|+..+.....+.. .+ ...|.++|+||+|+.+.. .. ...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~-~~-~~~ 233 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIV-PA-RRI 233 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHH-HH-HHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCch-hH-HHH
Confidence 57899999995321 2334678999999999976543222211 11 145789999999984310 00 011
Q ss_pred HHHHHH----------HhCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985 144 GQELAD----------EYGIKFFETSAKTNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 144 ~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (216)
...+.. ..+..++++||++|+|+++++++|.+.+..
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 222221 113578999999999999999999887654
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.62 E-value=9e-16 Score=120.96 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDG-------------------KRIKLQIWDTAGQER 76 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~ 76 (216)
++|+++|.+|+|||||+++|++........+..|.+.......+.+ ....+.|||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999987643222223223223333333321 124799999999765
Q ss_pred cc----cc---cccccccccEEEEEEECCCh----------hhHHHHHHHHHH---------------------------
Q 027985 77 FR----TI---TTAYYRGAMGILLVYDVTDE----------SSFNNIRNWMRN--------------------------- 112 (216)
Q Consensus 77 ~~----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~--------------------------- 112 (216)
.. .+ ....++.+|++++|+|+.+. ..+.++..+..+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 32 11 22347899999999999752 111111110000
Q ss_pred ------------HHH-------------------h-cCCCCcEEEEEeCCCC--CCCCCCCCHHHHHHHHHHhCCcEEEE
Q 027985 113 ------------IDQ-------------------H-AADNVNKILVGNKADM--DESKRAVPTAKGQELADEYGIKFFET 158 (216)
Q Consensus 113 ------------l~~-------------------~-~~~~~p~ivv~nK~D~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
+.. + ....+|+++++||.|. .+.........++.+++..+..++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 000 0 0113799999999984 22111345667788888889999999
Q ss_pred ecCCCCCHHHHHHH
Q 027985 159 SAKTNFNVEQVFFS 172 (216)
Q Consensus 159 Sa~~~~~i~~l~~~ 172 (216)
||+...++.++...
T Consensus 242 SAk~E~el~eL~~~ 255 (368)
T 2dby_A 242 SARLEAELAELSGE 255 (368)
T ss_dssp CHHHHHHHHTSCHH
T ss_pred echhHHHHHHhchH
Confidence 99987666655543
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.61 E-value=1.3e-17 Score=123.57 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=90.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEE------------EEEEEEC-CeE-----------------
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFK------------IRTIELD-GKR----------------- 63 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 63 (216)
..++|+|+|.+|+|||||+++|+...+...+.++...++. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999876554433333333222 1122221 110
Q ss_pred --EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCH
Q 027985 64 --IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT 141 (216)
Q Consensus 64 --~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 141 (216)
..+.++|++|.-.... .+-...+..+.++|......... .. .... ..|.++|+||+|+.+ ......
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~--~~---~~~~---~~~~iiv~NK~Dl~~-~~~~~~ 184 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE--KH---PGIM---KTADLIVINKIDLAD-AVGADI 184 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT--TC---HHHH---TTCSEEEEECGGGHH-HHTCCH
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh--hh---hhHh---hcCCEEEEeccccCc-hhHHHH
Confidence 1455666666211100 11112344566677532111100 00 0011 468899999999853 122455
Q ss_pred HHHHHHHHHh--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027985 142 AKGQELADEY--GIKFFETSAKTNFNVEQVFFSIAREIKQ 179 (216)
Q Consensus 142 ~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (216)
+.+..++... ++.++++||++|.|++++|++|.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 6666666655 4789999999999999999999887653
No 201
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.60 E-value=5.5e-16 Score=128.47 Aligned_cols=121 Identities=19% Similarity=0.215 Sum_probs=80.2
Q ss_pred CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCC---CccccceeeEEEEEE----------------------EE-------
Q 027985 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFT---TSFITTIGIDFKIRT----------------------IE------- 58 (216)
Q Consensus 11 ~~~~~~~i~v~G~~~sGKstli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~~------- 58 (216)
..+..++|+|+|.+|+|||||+|+|++..+. ....++++....... +.
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 4556799999999999999999999998763 333333221110000 00
Q ss_pred -------ECCe-EEEEEEEeCCCccc-----------cccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCC
Q 027985 59 -------LDGK-RIKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAAD 119 (216)
Q Consensus 59 -------~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~ 119 (216)
..+. ...+.||||||... +...+..++..+|++|+|+|+++.........++..+.. .
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence 0000 02589999999764 234445567889999999999875444555555555443 2
Q ss_pred CCcEEEEEeCCCCCC
Q 027985 120 NVNKILVGNKADMDE 134 (216)
Q Consensus 120 ~~p~ivv~nK~D~~~ 134 (216)
+.|+++|+||+|+.+
T Consensus 218 ~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 218 EDKIRVVLNKADMVE 232 (550)
T ss_dssp GGGEEEEEECGGGSC
T ss_pred CCCEEEEEECCCccC
Confidence 578999999999864
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.53 E-value=2.2e-15 Score=118.24 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=64.1
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCH--
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPT-- 141 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~-- 141 (216)
+.+.||||||...... ...+.+|++++|+|......+..+.. ... +.|.++|+||+|+.+.. ....
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~-----~~~---~~p~ivv~NK~Dl~~~~-~~~~~~ 216 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK-----GLM---EVADLIVINKDDGDNHT-NVAIAR 216 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH-----HHH---HHCSEEEECCCCTTCHH-HHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH-----hhh---cccCEEEEECCCCCChH-HHHHHH
Confidence 5799999999654332 24688999999999975433211111 001 35789999999985311 1110
Q ss_pred HHHHHHHHHh-------CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 142 AKGQELADEY-------GIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 142 ~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
...+...... ...++++||++|+|+++++++|.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1122211221 346899999999999999999988765
No 203
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.53 E-value=1.7e-15 Score=127.72 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCC----------------CccccceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD--DSFT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 77 (216)
-+|+|+|..++|||||..+|+. +... .+...+.|+......+.+++ +.++|+|||||..|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence 4689999999999999999852 1110 01122334444444455555 68999999999999
Q ss_pred ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
.......++-+|++|+|+|+.+.-..+...-| ..+..+ ++|.++++||+|...
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEecccccc
Confidence 99999999999999999999875433333333 334444 688999999999754
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.52 E-value=9.1e-14 Score=118.67 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=81.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC--------CC----------CCccccceeeEEEEEEEEECC-----eEEEEEEE
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD--------SF----------TTSFITTIGIDFKIRTIELDG-----KRIKLQIW 69 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 69 (216)
++.=+|+|+|..++|||||..+|+.. .. ..+.+...|+......+.+.+ ..+.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 55678999999999999999998521 11 112233334444444444432 24789999
Q ss_pred eCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027985 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDE 134 (216)
Q Consensus 70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~ 134 (216)
|||||..|.......++-+|++|+|+|+.+.-......-|..... . ++|.++++||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~-~---~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK-Y---GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-H---TCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH-c---CCCeEEEEccccccC
Confidence 999999999999999999999999999987544444444444333 3 789999999999743
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.52 E-value=1.1e-13 Score=104.59 Aligned_cols=111 Identities=14% Similarity=-0.014 Sum_probs=67.0
Q ss_pred EEEEEEeCCCccccccccc------cccccccEEEEEEECCChhhHHHHHHHHH-HHHHhcCCCCcEEEEEeCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWMR-NIDQHAADNVNKILVGNKADMDESK 136 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~l~~~~~~~~p~ivv~nK~D~~~~~ 136 (216)
+.+.||||||......... ..+.. +++|+++|+.............. ........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5799999999765432211 23456 88889998754322222211111 1111111257999999999985421
Q ss_pred CCCCHHHHHH----------------------------HHHHhC--CcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 137 RAVPTAKGQE----------------------------LADEYG--IKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 137 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
. ...+.. +....+ ..++++||++++|+++++++|.+.+.
T Consensus 188 ~---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 E---KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp H---HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred c---HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 1 111111 123333 47999999999999999999988764
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.50 E-value=9.7e-15 Score=123.90 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=94.7
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccce-------------------------------------------
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTT-SFITTI------------------------------------------- 48 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~-~~~~~~------------------------------------------- 48 (216)
....+|+|+|.+++|||||+|+|++..+-+ .....+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 356799999999999999999999977622 111100
Q ss_pred -------eeEEEEEEEEECCeEEEEEEEeCCCcccc-------------cccccccc-ccccEEEEEEECCChhhHHHHH
Q 027985 49 -------GIDFKIRTIELDGKRIKLQIWDTAGQERF-------------RTITTAYY-RGAMGILLVYDVTDESSFNNIR 107 (216)
Q Consensus 49 -------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 107 (216)
+.+.....+...+. .++.|+||||.... ..+...++ ..+|++++|+|++......+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 00011111222221 25889999995431 11222233 5789999999998643322221
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-H-HHHhC-CcEEEEecCCCCCHHHHHHHHHHH
Q 027985 108 NWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE-L-ADEYG-IKFFETSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 108 ~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (216)
.++..+ ...+.|+++|+||+|+.+.... ....... . ....+ ..++.+||++|.|+++|++.+.+.
T Consensus 208 ~ll~~L---~~~g~pvIlVlNKiDlv~~~~~-~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEV---DPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHH---CTTCSSEEEEEECTTSSCTTCC-SHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHH---HhcCCCEEEEEeCcccCCcchh-hHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 222222 3347899999999998653222 1111110 0 00112 357889999999999999988763
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=3.9e-13 Score=105.17 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=62.8
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHH
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK 143 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 143 (216)
+.+.|+||+|..... ......+|.+++|+|.......+.+... +. ..+.++++||+|+... .......
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~-~~~s~~~ 215 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDG-ERRASAA 215 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCC-HHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCc-hhHHHHH
Confidence 589999999964322 1234679999999998644322111111 11 2355778899997431 1111222
Q ss_pred HHHHHHHh----------CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 144 GQELADEY----------GIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 144 ~~~~~~~~----------~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
.+.+.... ..+++.+||+++.|++++++.|.+.+.
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 33333221 347899999999999999999988765
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.41 E-value=5.1e-13 Score=103.01 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=77.7
Q ss_pred ccccccccccccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCC-HHHHHHHHHHh
Q 027985 74 QERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVP-TAKGQELADEY 151 (216)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~ 151 (216)
++++..+...+++++|++++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+.+.. .+. .+....+++..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~-~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEE-EKKELERWISIYRDA 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHH-HHHHHHHHHHHHHHT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCcc-ccHHHHHHHHHHHHC
Confidence 5667777778999999999999999886 88888889887665 378999999999985421 111 34455666777
Q ss_pred CCcEEEEecCCCCCHHHHHHHHH
Q 027985 152 GIKFFETSAKTNFNVEQVFFSIA 174 (216)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~l~~~l~ 174 (216)
+..++++||++|+|++++++.+.
T Consensus 142 g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 142 GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHhhcc
Confidence 89999999999999999998763
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.39 E-value=4.2e-12 Score=100.67 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=64.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeE---------------EEEEEEeCCCcccc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF 77 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~ 77 (216)
...+|+++|.+|+|||||+|.|++... .....|+.+.+.....+.+.+.. ..+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457999999999999999999999776 56666776766766667666521 36899999995431
Q ss_pred -------ccccccccccccEEEEEEECCC
Q 027985 78 -------RTITTAYYRGAMGILLVYDVTD 99 (216)
Q Consensus 78 -------~~~~~~~~~~~d~~i~v~d~~~ 99 (216)
.......++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2223345688999999999863
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.36 E-value=4.1e-13 Score=106.26 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=54.1
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF 77 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~ 77 (216)
...++|+++|.+|+|||||+|+|++..+.....|+.|.+.....+.+++. ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34689999999999999999999998776666677776666666666542 135999999997653
Q ss_pred cc-------ccccccccccEEEEEEECCChh
Q 027985 78 RT-------ITTAYYRGAMGILLVYDVTDES 101 (216)
Q Consensus 78 ~~-------~~~~~~~~~d~~i~v~d~~~~~ 101 (216)
.. .+..+++.+|++++|+|+.+..
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 32 3445678999999999997643
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.25 E-value=1.3e-12 Score=93.67 Aligned_cols=103 Identities=9% Similarity=-0.026 Sum_probs=67.7
Q ss_pred CCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhc-----CCCCcEEEEEeCC-CCCCCCCCCCHHHHH
Q 027985 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA-----ADNVNKILVGNKA-DMDESKRAVPTAKGQ 145 (216)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~~p~ivv~nK~-D~~~~~~~~~~~~~~ 145 (216)
+|+...+.+|..++.++|++|||+|.+|.+.++ .+..+..+.... ..+.|++|++||. |++. ..+..++.
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~---Ams~~EI~ 185 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYLA 185 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC---BCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC---CCCHHHHH
Confidence 378888999999999999999999999875544 333332222211 2468999999995 6643 33444433
Q ss_pred HHHH----HhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 146 ELAD----EYGIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 146 ~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
.... ...+.+..|||.+|+|+.+-++||.+.+.
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 3221 12367899999999999999999987663
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.11 E-value=4.2e-11 Score=90.07 Aligned_cols=104 Identities=9% Similarity=-0.031 Sum_probs=72.0
Q ss_pred CCCccccccccccccccccEEEEEEECCChhhHHHHHHHH----HHHHHh-cCCCCcEEEEEeC-CCCCCCCCCCCHHHH
Q 027985 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWM----RNIDQH-AADNVNKILVGNK-ADMDESKRAVPTAKG 144 (216)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~----~~l~~~-~~~~~p~ivv~nK-~D~~~~~~~~~~~~~ 144 (216)
.+|+...+..|..++.++|++|||+|.+|.+.++ .+..+ ..+... ...+.|++|.+|| .|++. .....++
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~---Ams~~EI 269 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYL 269 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC---BCCHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC---CCCHHHH
Confidence 4577888999999999999999999999986544 22222 222221 1247899999996 58754 3344443
Q ss_pred HHHHH----HhCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027985 145 QELAD----EYGIKFFETSAKTNFNVEQVFFSIAREIK 178 (216)
Q Consensus 145 ~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (216)
..... ...+.+..|||.+|+|+.+-++||.+.+.
T Consensus 270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 32221 12357899999999999999999998764
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.09 E-value=5.8e-12 Score=99.69 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=85.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC------CCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc----cc--
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----TA-- 83 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~~-- 83 (216)
.+|+++|.+|+|||||+|+|++. .......++.|.+. ..+.++. .+.++||||........ ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999876 33334455555433 3344444 37899999954322111 11
Q ss_pred -cc---ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEe
Q 027985 84 -YY---RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETS 159 (216)
Q Consensus 84 -~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (216)
.+ ...+.++|+++....-.+..+.. +......+.|+++++||.|..+ ..........+.+..+..+.+.+
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~--~~~~~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVH--RTKLEKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEE--EEEGGGHHHHHHHHBTTTBCSSC
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccc--cccHHHHHHHHHHhcCCccCCCC
Confidence 11 56788999998843211111110 1112234689999999999854 22233445556667777777666
Q ss_pred cCCCCCH
Q 027985 160 AKTNFNV 166 (216)
Q Consensus 160 a~~~~~i 166 (216)
+.+.+++
T Consensus 312 ~~~~~~~ 318 (369)
T 3ec1_A 312 KRYAAEF 318 (369)
T ss_dssp GGGTTTC
T ss_pred chhhhhc
Confidence 6655444
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.99 E-value=9.9e-10 Score=86.87 Aligned_cols=96 Identities=22% Similarity=0.308 Sum_probs=71.5
Q ss_pred CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHH----HHH
Q 027985 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQ----ELA 148 (216)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~ 148 (216)
..+.|..++..+.+.++++++|+|+.++. ..|...+..... +.|+++|+||+|+.+. ....+... .++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~--~~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK--SVKHDKVKHWMRYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT--TSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc--ccCHHHHHHHHHHHH
Confidence 34677888888889999999999999853 345555555544 6899999999999642 22333333 345
Q ss_pred HHhCC---cEEEEecCCCCCHHHHHHHHHHH
Q 027985 149 DEYGI---KFFETSAKTNFNVEQVFFSIARE 176 (216)
Q Consensus 149 ~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~ 176 (216)
+..+. .++.+||++|+|++++++.|.+.
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 66676 79999999999999999998653
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.95 E-value=3.1e-11 Score=95.44 Aligned_cols=135 Identities=15% Similarity=0.156 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-------CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcccccccc----cc-
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSF-------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----TA- 83 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~~- 83 (216)
.+|+++|.+|+|||||+|+|++... .....++.|.. ...+.+++ .+.++||||......+. ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSS---SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHH
Confidence 5799999999999999999987521 12334444433 33344444 38899999964322111 11
Q ss_pred -----ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEE
Q 027985 84 -----YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFET 158 (216)
Q Consensus 84 -----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
.....+.++|+++......+..+. .+......+.|+++++||.|..+ ..........+.+..+..+++.
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~--~~~~~~~~~~~~~~~g~~l~p~ 309 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIH--RTKLEKADELYKNHAGDLLSPP 309 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEE--EEEHHHHHHHHHHHBTTTBCSS
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCccccc--cccHHHHHHHHHHHhCCccCCC
Confidence 135678888888874321111110 01112234689999999999854 2222334445556666655555
Q ss_pred ecC
Q 027985 159 SAK 161 (216)
Q Consensus 159 Sa~ 161 (216)
++.
T Consensus 310 ~~~ 312 (368)
T 3h2y_A 310 TPE 312 (368)
T ss_dssp CHH
T ss_pred chh
Confidence 543
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=9.4e-10 Score=87.91 Aligned_cols=62 Identities=23% Similarity=0.392 Sum_probs=36.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc----ccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSF----ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
..++++|+|++|+|||||++.|++..+.... .+..........+...+....+.++|++|..
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 4567999999999999999999887542211 1222222111122222222478999999843
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.93 E-value=4.4e-10 Score=91.89 Aligned_cols=150 Identities=13% Similarity=0.086 Sum_probs=84.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHh------cCCCCC-cc---ccc-----------eeeEEEEEE---------------
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFS------DDSFTT-SF---ITT-----------IGIDFKIRT--------------- 56 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~------~~~~~~-~~---~~~-----------~~~~~~~~~--------------- 56 (216)
.....|+|+|.+|+||||+++.|. +..... .. .+. ....++...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346689999999999999999997 332200 00 000 001111100
Q ss_pred EEECCeEEEEEEEeCCCcccccc-cccc---c--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeC
Q 027985 57 IELDGKRIKLQIWDTAGQERFRT-ITTA---Y--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNK-ILVGNK 129 (216)
Q Consensus 57 ~~~~~~~~~~~i~D~~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK 129 (216)
+...+ +.+.|+||||...... ++.. . +..+|.+++|+|+....... .....+... .|+ .+|+||
T Consensus 179 ~~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK 249 (504)
T 2j37_W 179 FKNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTK 249 (504)
T ss_dssp HHHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEEC
T ss_pred HHHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeC
Confidence 00022 5799999999653221 1111 1 22689999999997653321 112223221 464 888999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCcE------------------EEEecCCCCC-HHHHHHHHHHH
Q 027985 130 ADMDESKRAVPTAKGQELADEYGIKF------------------FETSAKTNFN-VEQVFFSIARE 176 (216)
Q Consensus 130 ~D~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~l~~~l~~~ 176 (216)
.|... ... .+.......+.++ +++|+..|.| +.+|++++.+.
T Consensus 250 ~D~~~-~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 250 LDGHA-KGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TTSCC-CCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred Ccccc-chH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99743 111 1222334444433 3467888988 99999888765
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.86 E-value=1.9e-08 Score=80.34 Aligned_cols=160 Identities=13% Similarity=0.139 Sum_probs=85.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-ccceeeEE--EEEEEEECCeEEEEEEEeCCCcccccccc-----ccccc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSFTTSF-ITTIGIDF--KIRTIELDGKRIKLQIWDTAGQERFRTIT-----TAYYR 86 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~~ 86 (216)
...++|+|++|+|||||+|.+++....... ....+.+. ....+... ..-.+.++|++|........ ...+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 347899999999999999999884322111 00000000 00111111 11158899999954211111 11233
Q ss_pred cccEEEEEEECC--ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC--C----CCCCCCHHH----HHHHH----HH
Q 027985 87 GAMGILLVYDVT--DESSFNNIRNWMRNIDQHAADNVNKILVGNKADMD--E----SKRAVPTAK----GQELA----DE 150 (216)
Q Consensus 87 ~~d~~i~v~d~~--~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~--~----~~~~~~~~~----~~~~~----~~ 150 (216)
..+..++ ++.. ...... ....+.. .+.|+++|.||.|+. + ......... ++.+. ..
T Consensus 148 ~~~~~~~-lS~G~~~kqrv~----la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKNDID----IAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GCSEEEE-EESSCCCHHHHH----HHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCccHHHHH----HHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4455554 7775 222211 1222222 267999999999962 1 111122222 33332 12
Q ss_pred hC---CcEEEEec--CCCCCHHHHHHHHHHHHHHHHhh
Q 027985 151 YG---IKFFETSA--KTNFNVEQVFFSIAREIKQRLVE 183 (216)
Q Consensus 151 ~~---~~~~~~Sa--~~~~~i~~l~~~l~~~~~~~~~~ 183 (216)
.+ ..+|.+|+ .++.|++++.+.+.+.+.+....
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~ 257 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRH 257 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHH
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhh
Confidence 22 36799999 55667999999998887655433
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.82 E-value=4.1e-09 Score=83.40 Aligned_cols=97 Identities=23% Similarity=0.295 Sum_probs=70.1
Q ss_pred CccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHH----HH
Q 027985 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQE----LA 148 (216)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~ 148 (216)
.++.|..++..+++.++++++|+|+.++.+ .|...+..... +.|+++|+||+|+.+. ....+.... ++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~--~~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR--SVKYPKLLRWMRRMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT--TCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC--ccCHHHHHHHHHHHH
Confidence 367788888888899999999999998763 33344444443 6899999999999652 222333333 34
Q ss_pred HHhCC---cEEEEecCCCCCHHHHHHHHHHHH
Q 027985 149 DEYGI---KFFETSAKTNFNVEQVFFSIAREI 177 (216)
Q Consensus 149 ~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (216)
+..+. .++.+||++|.|++++++.|.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 55665 689999999999999999886543
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.81 E-value=4.9e-09 Score=79.89 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=69.9
Q ss_pred EEeCCCccc-cccccccccccccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHH
Q 027985 68 IWDTAGQER-FRTITTAYYRGAMGILLVYDVTDESSFN--NIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKG 144 (216)
Q Consensus 68 i~D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 144 (216)
|-..|||.. ........+..+|+++.|+|+.++.+.. .+.++ . .+.|.++|+||+|+.+. ...+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~-------l-~~kp~ilVlNK~DL~~~---~~~~~~ 71 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI-------L-KNKPRIMLLNKADKADA---AVTQQW 71 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH-------C-SSSCEEEEEECGGGSCH---HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH-------H-CCCCEEEEEECcccCCH---HHHHHH
Confidence 446888753 3455666789999999999999886654 23333 2 36899999999999641 111222
Q ss_pred HHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027985 145 QELADEYGIKFFETSAKTNFNVEQVFFSIAREIKQRL 181 (216)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (216)
..+.+..+..++++||.++.|++++++.+.+.+....
T Consensus 72 ~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~ 108 (282)
T 1puj_A 72 KEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKF 108 (282)
T ss_dssp HHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHH
Confidence 3344445788999999999999999999888776543
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.79 E-value=2.7e-08 Score=75.33 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.++++|+|++|+|||||++.|++.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 588999999999999999999764
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.66 E-value=2.2e-08 Score=76.24 Aligned_cols=58 Identities=28% Similarity=0.360 Sum_probs=36.8
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDDSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 75 (216)
...++|+++|.||+|||||+|+|.+... .....++.|.... .+..+. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence 4568999999999999999999998764 3444454443332 333443 58999999964
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.50 E-value=3.9e-08 Score=74.12 Aligned_cols=56 Identities=20% Similarity=0.318 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 76 (216)
++++++|.+|+|||||+|+|.+.... ....++.+... ..+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeCC---CEEEEECCCccc
Confidence 69999999999999999999987652 23333333222 2233333 689999999653
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.49 E-value=2.7e-07 Score=74.14 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=53.2
Q ss_pred EEEEEEeCCCccccccccc------cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
+.+.|+||+|......... ......|.+++|+|+......... ...+... -.+..+|+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCcc---
Confidence 5789999999433221111 112347889999999764332222 2333332 235578899999732
Q ss_pred CCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985 138 AVPTAKGQELADEYGIKFFETSAKTNFNV 166 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (216)
....+..+....+.++.+++. |+++
T Consensus 254 --~gG~~ls~~~~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 254 --KGGGALSAVAATGAPIKFIGT--GEKI 278 (443)
T ss_dssp --SHHHHHHHHHTTCCCEEEEEC--SSST
T ss_pred --cccHHHHHHHHHCCCEEEEEc--CCCh
Confidence 223445556667888888874 5543
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.36 E-value=7.8e-07 Score=71.63 Aligned_cols=83 Identities=18% Similarity=0.090 Sum_probs=47.3
Q ss_pred EEEEEEeCCCcccccc-cc-----ccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRT-IT-----TAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNV-N-KILVGNKADMDES 135 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-~ivv~nK~D~~~~ 135 (216)
+.+.|+||||...... +. ...+..+|.+++|+|+..... .......+. . .. | ..+|+||.|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~---~-~~~~i~gvVlnK~D~~~- 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK---E-AVGEIGSIIVTKLDGSA- 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH---T-TSCSCEEEEEECSSSCS-
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh---h-cccCCeEEEEeCCCCcc-
Confidence 5789999999543211 11 112236899999999865432 111122222 1 34 5 788999999732
Q ss_pred CCCCCHHHHHHHHHHhCCcEEEE
Q 027985 136 KRAVPTAKGQELADEYGIKFFET 158 (216)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
. ...+..+....+.++.++
T Consensus 253 ~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 K----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----THHHHHHHHHSSCCEEEE
T ss_pred c----hHHHHHHHHHHCCCEEEe
Confidence 1 122334666667666655
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.32 E-value=3.3e-07 Score=76.31 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=39.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcCCCC-Ccccc--ceeeEEEEEEEEE-CCeEEEEEEEeCCCccc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDDSFT-TSFIT--TIGIDFKIRTIEL-DGKRIKLQIWDTAGQER 76 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~~~~-~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~ 76 (216)
....+.|+|+|.||+|||||+|+|++.... ..... ..+.......... ......+.|+||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 346789999999999999999999987642 11111 1111111111111 11114789999999654
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.30 E-value=1.8e-07 Score=70.49 Aligned_cols=93 Identities=17% Similarity=0.103 Sum_probs=60.7
Q ss_pred CCCcccc-ccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 027985 71 TAGQERF-RTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELAD 149 (216)
Q Consensus 71 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 149 (216)
.|||... .......+..+|+++.|+|+.++.+.... .+. .. ++|.++|+||+|+.+.. ..+....+.+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll--~k~~iivlNK~DL~~~~---~~~~~~~~~~ 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS--RKETIILLNKVDIADEK---TTKKWVEFFK 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT--TSEEEEEEECGGGSCHH---HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc--CCCcEEEEECccCCCHH---HHHHHHHHHH
Confidence 4676532 23455678899999999999987654321 011 11 68999999999996521 1122334455
Q ss_pred HhCCcEEEEecCCCCCHHHHHHHHHH
Q 027985 150 EYGIKFFETSAKTNFNVEQVFFSIAR 175 (216)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (216)
..+..+ .+||+++.|++++++.+..
T Consensus 73 ~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 567788 9999999999999887644
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.19 E-value=3.7e-07 Score=73.27 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=54.1
Q ss_pred EEEEEEeCCCccc--ccc-c---cccc--cccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027985 64 IKLQIWDTAGQER--FRT-I---TTAY--YRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDES 135 (216)
Q Consensus 64 ~~~~i~D~~G~~~--~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~ 135 (216)
+.+.|+||||... ... . .... ....+.+++|+|+......... ...+... -.+..+|+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc-
Confidence 5788999999533 111 1 1111 1235889999999764332222 2333333 235688999999632
Q ss_pred CCCCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985 136 KRAVPTAKGQELADEYGIKFFETSAKTNFNV 166 (216)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (216)
....+..+....+.++.+++. |+++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 233456666778899888884 6654
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.17 E-value=5.8e-07 Score=69.05 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=58.6
Q ss_pred cccccccccccEEEEEEECCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHHHHHhCCcEE
Q 027985 79 TITTAYYRGAMGILLVYDVTDESSFN-NIRNWMRNIDQHAADNVNKILVGNKADMDESKRA-VPTAKGQELADEYGIKFF 156 (216)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~ 156 (216)
.+....+.++|.+++|+|+.+|..-. .+.+++.... ..++|.++|+||+|+.+.... ........+....+..++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 34444678999999999998765433 3333332222 237899999999999652110 012334455556788999
Q ss_pred EEecCCCCCHHHHHH
Q 027985 157 ETSAKTNFNVEQVFF 171 (216)
Q Consensus 157 ~~Sa~~~~~i~~l~~ 171 (216)
.+||.++.|+++|+.
T Consensus 155 ~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 155 LTSSKDQDSLADIIP 169 (307)
T ss_dssp ECCHHHHTTCTTTGG
T ss_pred EEecCCCCCHHHHHh
Confidence 999998888776554
No 230
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.17 E-value=4.3e-06 Score=65.51 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=54.8
Q ss_pred ccccccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCC
Q 027985 84 YYRGAMGILLVYDVTDES-SFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAKGQELADEYGIKFFETSAKT 162 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (216)
...++|.+++|.+.. |. +...+.+++...... ++|+++|+||+|+.+.......+.........+..++.+|+.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 467899999887654 54 333344443333333 6788999999999652110001122233445678999999999
Q ss_pred CCCHHHHHHHH
Q 027985 163 NFNVEQVFFSI 173 (216)
Q Consensus 163 ~~~i~~l~~~l 173 (216)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999887643
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.09 E-value=7e-06 Score=62.87 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=56.0
Q ss_pred EEEEEEeCCCccc--ccc-ccc-----cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027985 64 IKLQIWDTAGQER--FRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDE 134 (216)
Q Consensus 64 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~ 134 (216)
+.+.|+||||... ... +.. .....+|.+++|+|+.... +.......+.. ..+ ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5799999999655 211 111 1234689999999986432 12122222222 245 678899999632
Q ss_pred CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 135 SKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
....+..+....+.++.+++ +|++++++
T Consensus 254 -----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 254 -----KGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp -----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred -----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 23345566777788888887 67776543
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.02 E-value=1.2e-05 Score=67.69 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.|+|+|+.|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998864
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.86 E-value=2.1e-05 Score=61.10 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=53.3
Q ss_pred EEEEEeCCCcccccccccc------ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCC
Q 027985 65 KLQIWDTAGQERFRTITTA------YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRA 138 (216)
Q Consensus 65 ~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~ 138 (216)
.+.++|++|.......... ..-..|-.++++|..... ++......+.... -..++++||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a---- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA---- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence 4667899995432211111 112367788999975442 3333333343322 23478889999521
Q ss_pred CCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 139 VPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
..-.+..+....+.++.+++ +|++++++
T Consensus 283 -~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 283 -RGGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp -CCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred -chhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 22345567778889988887 77776544
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.85 E-value=6.6e-07 Score=73.06 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=61.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeeEEEEEEEEECCeEEEEEEEeCCCccc--ccccc--------cc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTIT--------TA 83 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~~ 83 (216)
..+.|+++|.+|+||||+.+.|....... ..++.............+......+||..|.+. ....+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999986542211 011111000000001111112346788888632 22222 34
Q ss_pred ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 027985 84 YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGN 128 (216)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~n 128 (216)
++...++.++|+|.++. ..+....|+..+... +.+++++-.
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~ 157 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVES 157 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEE
Confidence 55567788999999986 555666666666554 344555443
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.78 E-value=1.9e-05 Score=63.69 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=23.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.....-|.|+|.+++|||||+|.|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 445677899999999999999999864
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.52 E-value=5.8e-05 Score=54.10 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=23.2
Q ss_pred CccccCCCCCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 4 APARARADYDYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 4 ~~~~~~~~~~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
+++|........--|+|+|++|+|||||++.|...
T Consensus 8 ~~~~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 8 SSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --------CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 44555555556667899999999999999999854
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.47 E-value=6.5e-05 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.765 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
++++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998754
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.33 E-value=0.00011 Score=51.79 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999764
No 239
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.28 E-value=0.0011 Score=53.33 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=45.6
Q ss_pred EEEEEEeCCCcccccc-ccc-----cccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVN-KILVGNKADMDESK 136 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~ 136 (216)
+.+.|+||||...... ... ..+...+.+++|+|+...... ......+.. ..+ .-+|+||.|... .
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~-~ 255 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDA-R 255 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSS-C
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCc-c
Confidence 5799999999543321 111 123467889999998754322 222222322 233 346889999632 1
Q ss_pred CCCCHHHHHHHHHHhCCcEEEE
Q 027985 137 RAVPTAKGQELADEYGIKFFET 158 (216)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
. ..+..+....+.++.++
T Consensus 256 --~--g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 --G--GAALSIRHITGKPIKFL 273 (433)
T ss_dssp --C--THHHHHHHHHCCCEEEE
T ss_pred --H--HHHHHHHHHHCCCeEEE
Confidence 1 23345566667655444
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.27 E-value=0.00014 Score=52.15 Aligned_cols=21 Identities=43% Similarity=0.638 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
.++|+|++|+|||||++.|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999875
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.22 E-value=0.0001 Score=56.62 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-.++|+|++|+|||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 368999999999999999998654
No 242
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.20 E-value=0.00018 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
-.|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999876
No 243
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.17 E-value=0.0002 Score=50.78 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~ 38 (216)
++|+|++|+|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999754
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.17 E-value=0.00021 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
-++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999999765
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.13 E-value=0.00024 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-++|+|++|||||||++.+.+-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999987643
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.12 E-value=0.00025 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-++|+|++|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999997643
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.10 E-value=0.00024 Score=49.65 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027985 17 KLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~ 36 (216)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 46899999999999999754
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.08 E-value=0.00028 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999987643
No 249
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.08 E-value=0.00044 Score=49.58 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=21.6
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~ 37 (216)
......|+|.|.+||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999998863
No 250
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.07 E-value=0.00043 Score=48.38 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|+|++||||||+.+.|..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 251
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.07 E-value=0.00086 Score=51.40 Aligned_cols=20 Identities=50% Similarity=0.758 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027985 17 KLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~ 36 (216)
.++++|++|+|||||+|.|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.05 E-value=0.00037 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=22.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.....|+|+|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44578899999999999999988653
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.04 E-value=0.00036 Score=49.52 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~ 38 (216)
|+|+|++|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 254
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.04 E-value=0.00035 Score=50.49 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-|+|+|++|+|||||++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 57899999999999999998653
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.01 E-value=0.00038 Score=48.06 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999987654
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.00 E-value=0.00039 Score=50.00 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999998754
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.98 E-value=0.00041 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
..|+|+|++||||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988654
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.98 E-value=0.00039 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999888754
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.98 E-value=0.00045 Score=47.99 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 027985 16 IKLLLIGDSGVGKSCLLLRF 35 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l 35 (216)
+-|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.97 E-value=0.00041 Score=49.17 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
-++|+|++|+|||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.97 E-value=0.00051 Score=48.05 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
.-|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 262
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.96 E-value=0.00045 Score=50.05 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027985 16 IKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~ 36 (216)
++|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999884
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.95 E-value=0.00043 Score=49.63 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
..|+|+|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999987654
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.94 E-value=0.00045 Score=47.96 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 265
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.94 E-value=0.0005 Score=53.84 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF 40 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~ 40 (216)
.++|+|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 579999999999999999997653
No 266
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.94 E-value=0.00049 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998853
No 267
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.92 E-value=0.00049 Score=49.32 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|+|++|||||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 268
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.92 E-value=0.00046 Score=50.54 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999988754
No 269
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.90 E-value=0.0006 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.649 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~ 36 (216)
...|+|+|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 270
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.89 E-value=0.00056 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998764
No 271
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.88 E-value=0.00073 Score=48.65 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 272
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.88 E-value=0.00057 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999988754
No 273
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.87 E-value=0.00072 Score=47.78 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
...|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999988654
No 274
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.86 E-value=0.00066 Score=49.04 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
+.|+|+|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988853
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.85 E-value=0.0007 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-|+|.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999998754
No 276
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.85 E-value=0.0006 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999988754
No 277
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.85 E-value=0.0006 Score=51.54 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999988754
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.84 E-value=0.0006 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988754
No 279
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.84 E-value=0.0005 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988654
No 280
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.83 E-value=0.0007 Score=47.84 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.83 E-value=0.00069 Score=48.83 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...|+|+|+.|||||||++.|.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 282
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.83 E-value=0.00085 Score=47.26 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 283
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.82 E-value=0.00062 Score=48.48 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999988653
No 284
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.82 E-value=0.0015 Score=44.18 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45899999999999999987654
No 285
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.81 E-value=0.00065 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|+|.+||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.81 E-value=0.00076 Score=47.69 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
No 287
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.81 E-value=0.00065 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.++|+|++|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998763
No 288
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.81 E-value=0.00073 Score=48.26 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998864
No 289
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.81 E-value=0.00065 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998754
No 290
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.81 E-value=0.00067 Score=51.02 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 36899999999999999998754
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.80 E-value=0.00085 Score=47.51 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988753
No 292
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.80 E-value=0.00077 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987653
No 293
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.80 E-value=0.00069 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 46899999999999999988754
No 294
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.79 E-value=0.00072 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988764
No 295
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.78 E-value=0.00078 Score=50.09 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988764
No 296
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.78 E-value=0.00072 Score=50.53 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998754
No 297
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.78 E-value=0.00077 Score=47.30 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-++|+|.+|+|||||++.|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46789999999999999999864
No 298
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.78 E-value=0.00083 Score=48.07 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|+|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999998853
No 299
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.78 E-value=0.00074 Score=48.39 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 300
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.77 E-value=0.00074 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999988754
No 301
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.77 E-value=0.00074 Score=48.88 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998853
No 302
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.77 E-value=0.00077 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5789999999999999988753
No 303
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.76 E-value=0.00079 Score=50.13 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999886
No 304
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.76 E-value=0.001 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.591 Sum_probs=21.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...+.|+|.|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999998854
No 305
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.76 E-value=0.001 Score=47.85 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999864
No 306
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.75 E-value=0.00094 Score=47.68 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=22.5
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
......|+|.|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 344578999999999999999998765
No 307
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.75 E-value=0.0008 Score=50.09 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999988754
No 308
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.75 E-value=0.00079 Score=48.21 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
..-|+|+|++||||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988653
No 309
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.74 E-value=0.00097 Score=47.20 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
No 310
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.74 E-value=0.00085 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999886
No 311
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.73 E-value=0.00059 Score=49.35 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998875
No 312
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.72 E-value=0.00082 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999988754
No 313
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.72 E-value=0.00091 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998753
No 314
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.72 E-value=0.0011 Score=49.16 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~ 37 (216)
..+.|+|+|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998853
No 315
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.72 E-value=0.0011 Score=47.64 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
+.|+|+|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
No 316
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.72 E-value=0.0009 Score=48.76 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998754
No 317
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.72 E-value=0.001 Score=50.96 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF 40 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~ 40 (216)
.++++|++|+|||||+|.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987543
No 318
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.72 E-value=0.00094 Score=50.57 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999988754
No 319
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.72 E-value=0.00099 Score=46.09 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
+.|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
No 320
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.70 E-value=0.00092 Score=49.37 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027985 17 KLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~ 36 (216)
-++|+|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999887
No 321
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.68 E-value=0.001 Score=48.33 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
+.|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998854
No 322
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.68 E-value=0.00093 Score=49.85 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999988764
No 323
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.67 E-value=0.00095 Score=50.20 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999988754
No 324
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.67 E-value=0.0012 Score=48.42 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.5
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
....-|+|.|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567899999999999999998775
No 325
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.66 E-value=0.00095 Score=51.40 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=21.9
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
....-|+|+|++|||||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34567899999999999999988653
No 326
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.66 E-value=0.00061 Score=49.98 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=14.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cC
Q 027985 17 KLLLIGDSGVGKSCLLLRFS-DD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~-~~ 38 (216)
-++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57899999999999999998 54
No 327
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.66 E-value=0.0009 Score=48.76 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
-++|+|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999874
No 328
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.66 E-value=0.0011 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998853
No 329
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.65 E-value=0.0017 Score=45.81 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
....|+|+|.+||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999988643
No 330
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.64 E-value=0.0012 Score=46.30 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~ 36 (216)
...|+|.|.+||||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3568999999999999999886
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.62 E-value=0.0012 Score=49.52 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998765
No 332
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.62 E-value=0.0014 Score=49.84 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...-|+|.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 333
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.60 E-value=0.0013 Score=48.07 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
+.|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998853
No 334
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.59 E-value=0.00061 Score=47.67 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.+.|+|++|||||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988754
No 335
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.58 E-value=0.0012 Score=46.18 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
.|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 336
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.58 E-value=0.0011 Score=52.09 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998765
No 337
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.57 E-value=0.0012 Score=48.15 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027985 16 IKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~ 36 (216)
..|+|.|.+||||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999885
No 338
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.56 E-value=0.0012 Score=49.83 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~ 38 (216)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999864
No 339
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.56 E-value=0.0018 Score=45.65 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.56 E-value=0.0019 Score=46.41 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
...|+|+|.+||||||+.+.|...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999998764
No 341
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.56 E-value=0.00083 Score=45.85 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++++|++|+|||||++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987643
No 342
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.55 E-value=0.0012 Score=51.78 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.|+|+|++|||||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998754
No 343
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.54 E-value=0.0016 Score=46.58 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998765
No 344
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.53 E-value=0.001 Score=51.08 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.++|+|+.|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5789999999999999988764
No 345
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.51 E-value=0.0024 Score=46.43 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
-|+|+|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999988753
No 346
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.50 E-value=0.0016 Score=46.06 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 347
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.49 E-value=0.0015 Score=48.60 Aligned_cols=22 Identities=36% Similarity=0.672 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~ 39 (216)
++++|++|+|||||++.+.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998643
No 348
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.49 E-value=0.00099 Score=46.74 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=16.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 349
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.49 E-value=0.0012 Score=48.03 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027985 16 IKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~ 36 (216)
..|+|+|++||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999885
No 350
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.48 E-value=0.0018 Score=47.91 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...|.|+|+.|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 351
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.48 E-value=0.0014 Score=51.33 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF 40 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~ 40 (216)
-++|+|+.|||||||++.+.+-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 368999999999999999987653
No 352
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.48 E-value=0.0015 Score=47.46 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
+.|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998853
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.47 E-value=0.0018 Score=45.12 Aligned_cols=23 Identities=17% Similarity=0.279 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
..++|+|.+|||||||+.+|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999998753
No 354
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.46 E-value=0.0016 Score=49.61 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999988753
No 355
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.46 E-value=0.0022 Score=49.48 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=21.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...++-|+|.|++|||||||++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988743
No 356
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.45 E-value=0.0016 Score=50.94 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-++|+|+.|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999988764
No 357
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.45 E-value=0.0019 Score=47.41 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~ 37 (216)
....|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998853
No 358
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.44 E-value=0.0017 Score=50.96 Aligned_cols=23 Identities=35% Similarity=0.314 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-++|+|+.|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36899999999999999988754
No 359
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.44 E-value=0.0017 Score=48.43 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998853
No 360
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.43 E-value=0.0014 Score=48.77 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=21.8
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~ 37 (216)
......|+++|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999998864
No 361
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.43 E-value=0.0023 Score=45.86 Aligned_cols=25 Identities=28% Similarity=0.178 Sum_probs=21.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~ 37 (216)
.....|+|+|.+|||||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 362
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.43 E-value=0.0017 Score=46.00 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 363
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.43 E-value=0.0023 Score=48.69 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.2
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHh
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~ 36 (216)
......|+|.|++|||||||++.|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999998764
No 364
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.43 E-value=0.0018 Score=45.40 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988653
No 365
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.43 E-value=0.002 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999998864
No 366
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.42 E-value=0.0018 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 367
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.42 E-value=0.0019 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
-|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988653
No 368
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.41 E-value=0.0018 Score=50.85 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 36899999999999999988754
No 369
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.41 E-value=0.0018 Score=51.13 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999998755
No 370
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.41 E-value=0.0019 Score=44.82 Aligned_cols=22 Identities=14% Similarity=0.375 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998853
No 371
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.41 E-value=0.0016 Score=50.54 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 372
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.40 E-value=0.0018 Score=45.99 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 373
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.40 E-value=0.0018 Score=50.79 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999988754
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.38 E-value=0.0024 Score=44.68 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...|+|+|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999998865
No 375
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.37 E-value=0.0017 Score=51.03 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|++|||||||++.+.+.-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.37 E-value=0.00081 Score=48.50 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998864
No 377
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.37 E-value=0.0018 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.++|+|++|||||||++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998753
No 378
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.35 E-value=0.002 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-++|+|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999988754
No 379
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.35 E-value=0.002 Score=50.74 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 36899999999999999987654
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.34 E-value=0.0021 Score=45.16 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988753
No 381
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.34 E-value=0.002 Score=49.44 Aligned_cols=90 Identities=13% Similarity=0.051 Sum_probs=48.6
Q ss_pred EEEEEeCCCcccccc-----c-------cccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027985 65 KLQIWDTAGQERFRT-----I-------TTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADM 132 (216)
Q Consensus 65 ~~~i~D~~G~~~~~~-----~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~ 132 (216)
.+.++|++|...... + ........+.+++++|.......- ..+..+.... + ..++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHHc--C-CcEEEEECCcc
Confidence 456889999432111 0 011233466788899986543322 2223333221 2 34778899985
Q ss_pred CCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHH
Q 027985 133 DESKRAVPTAKGQELADEYGIKFFETSAKTNFNVE 167 (216)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (216)
.. . .-.+..+....+.++.+++ +|++++
T Consensus 260 ~a-~----gg~~l~i~~~~~~pi~~ig--~Ge~~~ 287 (304)
T 1rj9_A 260 TA-K----GGVLIPIVRTLKVPIKFVG--VGEGPD 287 (304)
T ss_dssp SC-C----CTTHHHHHHHHCCCEEEEE--CSSSTT
T ss_pred cc-c----ccHHHHHHHHHCCCeEEEe--CCCChh
Confidence 32 1 2234456677888887776 555544
No 382
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.32 E-value=0.002 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-++|+|++|||||||++.+++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 47999999999999999987643
No 383
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.31 E-value=0.0022 Score=48.42 Aligned_cols=22 Identities=36% Similarity=0.672 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~ 39 (216)
++++|++|+|||||++.+.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999998643
No 384
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.30 E-value=0.0021 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998764
No 385
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.30 E-value=0.0022 Score=49.13 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
.--++++|+.|+||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34678999999999999998853
No 386
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.29 E-value=0.0027 Score=48.74 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
....|+|+|++|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999988763
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.29 E-value=0.0028 Score=45.87 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998865
No 388
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.28 E-value=0.0021 Score=52.88 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|++|||||||++.+++..
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998754
No 389
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.28 E-value=0.0017 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 36899999999999999988754
No 390
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.27 E-value=0.0034 Score=44.74 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=22.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
-.+...|+|.|.+||||||+.+.|...
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHh
Confidence 346788999999999999999988643
No 391
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.27 E-value=0.0023 Score=46.50 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
-++|+|++|+|||||+..+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999998743
No 392
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.25 E-value=0.0029 Score=47.02 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=21.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988754
No 393
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.24 E-value=0.003 Score=43.67 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=18.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~ 36 (216)
.-.|+|.|.+||||||+.+.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999874
No 394
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.24 E-value=0.0028 Score=47.16 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~ 36 (216)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 395
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.22 E-value=0.0029 Score=46.50 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~ 36 (216)
..+.|+|.|++||||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999885
No 396
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.17 E-value=0.0026 Score=50.44 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4689999999999999998764
No 397
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.14 E-value=0.003 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
...+++.|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998753
No 398
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.13 E-value=0.0031 Score=45.01 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
..+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988754
No 399
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.13 E-value=0.0027 Score=48.32 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999999988654
No 400
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.11 E-value=0.0017 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999988754
No 401
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.11 E-value=0.0022 Score=49.48 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
--++|+|..|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 356899999999999999998653
No 402
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.10 E-value=0.0025 Score=44.47 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999988643
No 403
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.10 E-value=0.0037 Score=47.30 Aligned_cols=24 Identities=42% Similarity=0.412 Sum_probs=21.0
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHh
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~ 36 (216)
...+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999885
No 404
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.10 E-value=0.0033 Score=44.04 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
-.+|+|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999753
No 405
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.09 E-value=0.0034 Score=45.29 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~ 37 (216)
...-|+|.|.+|+||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998754
No 406
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.08 E-value=0.0037 Score=45.63 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988643
No 407
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.07 E-value=0.0035 Score=45.99 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
..-|+|.|.+||||||+++.|...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999999999988653
No 408
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.06 E-value=0.0035 Score=45.23 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
-++|+|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 409
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0028 Score=51.49 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-.++|+|+.|||||||++.|.+..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 368999999999999999987653
No 410
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.04 E-value=0.0042 Score=45.47 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=19.6
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHh
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~ 36 (216)
.+.+++.|+|+|||||||+...|.
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHH
Confidence 467899999999999999998874
No 411
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.04 E-value=0.0036 Score=45.87 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999874
No 412
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.02 E-value=0.0036 Score=49.09 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
.--++++|+.|+||||+++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 44688999999999999998853
No 413
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.01 E-value=0.0034 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
-.|+|+|++|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998853
No 414
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.00 E-value=0.0043 Score=41.88 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
...|++.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999987654
No 415
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.00 E-value=0.0036 Score=51.02 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=50.6
Q ss_pred EEEEEEeCCCcccccccc----ccc---c-----ccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985 64 IKLQIWDTAGQERFRTIT----TAY---Y-----RGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~----~~~---~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 131 (216)
+.+.|+||+|........ ... . ...+-+++|+|+...... ......+.... + ...+|+||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a---l~~ak~f~~~~--~-itgvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA---VSQAKLFHEAV--G-LTGITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH---HHHHHHHHHHT--C-CSEEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH---HHHHHHHHhhc--C-CCEEEEEcCC
Confidence 457889999953221110 011 1 124567889998644221 12223333322 2 2367889999
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Q 027985 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQV 169 (216)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (216)
-.. ..-.+..+....+.++.++. +|++++++
T Consensus 450 ~ta-----kgG~~lsi~~~~~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 450 GTA-----KGGVIFSVADQFGIPIRYIG--VGERIEDL 480 (503)
T ss_dssp GCS-----CCTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred Ccc-----cccHHHHHHHHHCCCEEEEe--cCCChhhc
Confidence 521 22345667777888887765 66666543
No 416
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.99 E-value=0.0045 Score=47.11 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
.-|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 417
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.94 E-value=0.0041 Score=48.55 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
++.|+|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998874
No 418
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.93 E-value=0.02 Score=46.18 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=20.4
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHh
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~ 36 (216)
.....-|.|+|..++|||+|+|.|+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3456667799999999999999654
No 419
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.90 E-value=0.0068 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
...-|+|+|.+||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456889999999999999998753
No 420
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.89 E-value=0.0037 Score=44.93 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.+++.|+||+|||+++.++...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999998888653
No 421
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.87 E-value=0.0044 Score=48.94 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
-.++|+|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3678999999999999999875
No 422
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.83 E-value=0.0059 Score=41.54 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 027985 18 LLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~ 36 (216)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3799999999999999974
No 423
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.80 E-value=0.0049 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-.+++.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899999999999999998764
No 424
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.79 E-value=0.0052 Score=44.63 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998864
No 425
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.78 E-value=0.0054 Score=45.54 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
....|++.|++|+|||+|++.+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998753
No 426
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.76 E-value=0.0052 Score=46.31 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999764
No 427
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.74 E-value=0.0058 Score=43.81 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~ 38 (216)
++|.|++|+|||+|++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988653
No 428
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.72 E-value=0.0066 Score=46.20 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.+.-+++.|+||+|||+|.+.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456788899999999999998654
No 429
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.72 E-value=0.0062 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++++|+.|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 430
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.72 E-value=0.004 Score=46.56 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
....|+|.|.+||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999988654
No 431
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.70 E-value=0.0057 Score=46.73 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-.|++.|++|+|||+|++.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999998764
No 432
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.68 E-value=0.0056 Score=46.15 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 433
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.66 E-value=0.006 Score=49.69 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
.++|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999998853
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.66 E-value=0.0073 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~ 37 (216)
.....|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999988754
No 435
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.65 E-value=0.006 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
-.++|.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999988753
No 436
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.62 E-value=0.0063 Score=50.40 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-++++|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999998753
No 437
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.60 E-value=0.0077 Score=43.03 Aligned_cols=26 Identities=38% Similarity=0.534 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDSF 40 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~~ 40 (216)
...|+|+|++|+|||||...|.....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 35689999999999999999986643
No 438
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.59 E-value=0.0068 Score=48.89 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
+++|+|+.|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 67899999999999999988764
No 439
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.57 E-value=0.0085 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~ 37 (216)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999986643
No 440
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.56 E-value=0.01 Score=44.46 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44568999999999999999998764
No 441
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.56 E-value=0.0069 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 58999999999999999987653
No 442
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.52 E-value=0.0079 Score=42.94 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 443
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.0074 Score=50.70 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47899999999999999998643
No 444
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.51 E-value=0.0078 Score=50.38 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987643
No 445
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.44 E-value=0.0075 Score=47.25 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
-.++|.|++|+|||||++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 446
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.44 E-value=0.011 Score=46.03 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=19.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~ 36 (216)
....|+++|++|+||||+.+.|.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 44689999999999999998764
No 447
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.44 E-value=0.0084 Score=43.97 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999777653
No 448
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.41 E-value=0.0089 Score=47.03 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=18.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~ 36 (216)
.+ .+|+|+.|+|||||++.++
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 45 4599999999999999975
No 449
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.40 E-value=0.0081 Score=45.83 Aligned_cols=90 Identities=14% Similarity=0.102 Sum_probs=48.8
Q ss_pred EEEEEEeCCCccccccc----cccccc--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 64 IKLQIWDTAGQERFRTI----TTAYYR--GAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
+.+.|+||+|....... ....+. ..+.+++|+|++.. ...+.++...+.. -+ ..-+|+||.|...
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~--- 253 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETT--- 253 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCS---
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCccc---
Confidence 47899999996543211 111222 35678889987642 2333333222221 11 2356679999632
Q ss_pred CCCHHHHHHHHHHhCCcEEEEecCCCCCH
Q 027985 138 AVPTAKGQELADEYGIKFFETSAKTNFNV 166 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (216)
....+..+....+.++.+++ .|+++
T Consensus 254 --~~g~~~~~~~~~~~pi~~i~--~ge~v 278 (296)
T 2px0_A 254 --SLGSVFNILAESKIGVGFMT--NGQNV 278 (296)
T ss_dssp --CCHHHHHHHHTCSCCCSEEC--CSSCT
T ss_pred --chhHHHHHHHHHCcCEEEEE--CCCCC
Confidence 12255566677777766654 34443
No 450
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.39 E-value=0.014 Score=44.96 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
....|++.|+||+|||+|++.+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999998654
No 451
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.38 E-value=0.0092 Score=50.15 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57899999999999999998753
No 452
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.37 E-value=0.009 Score=45.41 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988653
No 453
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.35 E-value=0.0089 Score=49.53 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF 40 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~ 40 (216)
.++|+|+.|+|||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 368999999999999999987543
No 454
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.34 E-value=0.0096 Score=45.64 Aligned_cols=92 Identities=21% Similarity=0.141 Sum_probs=51.6
Q ss_pred EEEEEEeCCCcccccccc-------cc-----ccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027985 64 IKLQIWDTAGQERFRTIT-------TA-----YYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKAD 131 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~-------~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 131 (216)
+.+.|+|+||........ .. .....+.+++|+|+... .+.+.. ...+.... + ..-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~--~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV--N-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence 468999999953211100 00 11347788999998633 222222 22233221 2 2356779999
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCHHH
Q 027985 132 MDESKRAVPTAKGQELADEYGIKFFETSAKTNFNVEQ 168 (216)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (216)
... ..-.+..+....+.++.+++ .|+.+++
T Consensus 261 ~~~-----~gG~~l~~~~~~~~Pi~~i~--~Ge~~~d 290 (306)
T 1vma_A 261 GTA-----KGGITLAIARELGIPIKFIG--VGEKAED 290 (306)
T ss_dssp GCS-----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred Ccc-----chHHHHHHHHHHCCCEEEEe--CCCChhh
Confidence 532 22246778888898888886 4555544
No 455
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.33 E-value=0.0075 Score=46.95 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~ 38 (216)
+++.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988763
No 456
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.32 E-value=0.0092 Score=46.07 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.-.|++.|+||+|||+|++.+....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4579999999999999999987643
No 457
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.31 E-value=0.0094 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|.|++|+|||||++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987543
No 458
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.30 E-value=0.0088 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
-+.|+|++|+|||||+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999988653
No 459
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.29 E-value=0.01 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 460
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.28 E-value=0.0099 Score=49.97 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDSF 40 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~~ 40 (216)
.++|+|+.|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999987543
No 461
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.28 E-value=0.011 Score=49.00 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++|+|+.|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998754
No 462
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.28 E-value=0.0071 Score=50.76 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++++|+.|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 57899999999999999987753
No 463
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.25 E-value=0.01 Score=45.24 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
-.++++|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999988654
No 464
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.25 E-value=0.0099 Score=46.14 Aligned_cols=22 Identities=27% Similarity=0.606 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~ 39 (216)
+++.|++|+||||+++.+.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999987653
No 465
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.24 E-value=0.01 Score=42.86 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
.+.|+|.|.+||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988754
No 466
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.23 E-value=0.0079 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++++|+.|+|||||++.+.+--
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 67999999999999999887643
No 467
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.011 Score=47.53 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.+-.|++.|+||+|||+|++++.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999998764
No 468
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.20 E-value=0.013 Score=41.18 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~ 38 (216)
++|+|.++||||+|...|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 469
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.014 Score=46.89 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.4
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
..+-.|++.|+||+|||+|++++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34567999999999999999999764
No 470
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.17 E-value=0.025 Score=40.18 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=53.7
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCCCCH
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHA--ADNVNKILVGNKADMDESKRAVPT 141 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~ 141 (216)
+.+.|+|+|+.. .......+..+|.+|+++..+.. + ..+...+..+.... ..+.++.+|+|+.|... . ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~---~-~~ 147 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA---T-ML 147 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE---E-EE
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc---h-HH
Confidence 678999999865 33344566779999999987653 3 56666666665432 23467789999999522 1 22
Q ss_pred HHHHHHHHHhCCcEE
Q 027985 142 AKGQELADEYGIKFF 156 (216)
Q Consensus 142 ~~~~~~~~~~~~~~~ 156 (216)
.+...+.+..+.+++
T Consensus 148 ~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 148 NVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHcCCcee
Confidence 334455555554433
No 471
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.16 E-value=0.012 Score=45.77 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~ 37 (216)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988864
No 472
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.15 E-value=0.007 Score=50.62 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.++++|+.|+|||||++.+.+--
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57899999999999999777643
No 473
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.14 E-value=0.014 Score=42.94 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-|+|.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999998654
No 474
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.012 Score=47.34 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.2
Q ss_pred CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 13 DYLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 13 ~~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
..+-.|++.|+||+|||+|++++.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999998764
No 475
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.012 Score=49.42 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDSF 40 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~~ 40 (216)
++|+|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999987543
No 476
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.09 E-value=0.014 Score=45.25 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
-|+|+|++|||||||...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 477
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.08 E-value=0.017 Score=42.12 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=21.1
Q ss_pred CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 027985 12 YDYLIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 12 ~~~~~~i~v~G~~~sGKstli~~l~~ 37 (216)
.....-|+|.|.+|+||||+++.|..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33457789999999999999998754
No 478
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.08 E-value=0.06 Score=41.28 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~~ 39 (216)
+++.|++|+|||++++.+....
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHT
T ss_pred EEeeCcCCCCHHHHHHHHHHHh
Confidence 4556679999999999986543
No 479
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.07 E-value=0.0091 Score=50.05 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~ 38 (216)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988764
No 480
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.07 E-value=0.012 Score=45.59 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 027985 18 LLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~~~ 38 (216)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988654
No 481
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.06 E-value=0.0055 Score=45.79 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027985 17 KLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~ 37 (216)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999865
No 482
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.05 E-value=0.011 Score=46.42 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999988753
No 483
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.04 E-value=0.014 Score=44.72 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-.+++.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999887653
No 484
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.01 E-value=0.015 Score=43.40 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
..|+|.|++|+|||+|++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 568999999999999999987654
No 485
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.99 E-value=0.015 Score=44.60 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-|+|+|++|||||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35789999999999999998654
No 486
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.97 E-value=0.012 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
-.++|.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998643
No 487
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.97 E-value=0.016 Score=41.54 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 027985 18 LLLIGDSGVGKSCLLLRFS 36 (216)
Q Consensus 18 i~v~G~~~sGKstli~~l~ 36 (216)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3689999999999999873
No 488
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.96 E-value=0.017 Score=40.23 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.-|++.|++|+||||+.-.|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 468999999999999999998754
No 489
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.014 Score=46.36 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.+-.|++.|+||+|||.|++++.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999764
No 490
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.92 E-value=0.014 Score=45.64 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-.|++.|++|+|||+|++.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999998754
No 491
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.90 E-value=0.15 Score=37.23 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=58.2
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCCCCHHH
Q 027985 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMRNIDQHAADNVNKILVGNKADMDESKRAVPTAK 143 (216)
Q Consensus 64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 143 (216)
+.+.|+|+|+... ......+..+|.+|+++..+ ..++..+...++.+.........+.+|+|+.+... ....
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~---~~~~-- 190 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS---RITS-- 190 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT---TSCH--
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC---CCCH--
Confidence 5789999998542 23445677899999998775 57777777777777655433456788999998532 2233
Q ss_pred HHHHHHHhCCcEEEEe
Q 027985 144 GQELADEYGIKFFETS 159 (216)
Q Consensus 144 ~~~~~~~~~~~~~~~S 159 (216)
+.+.+..+.+++..-
T Consensus 191 -~~~~~~~~~~v~~~i 205 (245)
T 3ea0_A 191 -DEIEKVIGRPISKRI 205 (245)
T ss_dssp -HHHHHHHTSCEEEEE
T ss_pred -HHHHHHhCCCeEEEC
Confidence 344455677666553
No 492
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.90 E-value=0.0092 Score=49.55 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
....|+|+|.+|||||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3467899999999999999998654
No 493
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.89 E-value=0.014 Score=47.84 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 027985 17 KLLLIGDSGVGKSCLLLRFSDDS 39 (216)
Q Consensus 17 ~i~v~G~~~sGKstli~~l~~~~ 39 (216)
.|+++|++|+|||+|++.+.+..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999987643
No 494
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.88 E-value=0.014 Score=47.07 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
.-.++|.|++|+|||+|++.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988653
No 495
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.88 E-value=0.015 Score=44.94 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
..|+|.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999998654
No 496
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.85 E-value=0.19 Score=36.35 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=24.7
Q ss_pred EEEEECCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027985 92 LLVYDVTDESSFN-NIRNWMRNIDQHAADNVNKILVGNKADMDESKR 137 (216)
Q Consensus 92 i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~ 137 (216)
++.+|- -+.+. .+...+..+.. .++|+++.+-..|-.....
T Consensus 104 vV~IDE--aQFf~~~~v~~l~~la~---~gi~Vi~~GLd~DF~~~~F 145 (219)
T 3e2i_A 104 VIGIDE--VQFFDDEIVSIVEKLSA---DGHRVIVAGLDMDFRGEPF 145 (219)
T ss_dssp EEEECC--GGGSCTHHHHHHHHHHH---TTCEEEEEEESBCTTSCBC
T ss_pred EEEEec--hhcCCHHHHHHHHHHHH---CCCEEEEeecccccccCCC
Confidence 455554 34444 34444555543 3799999999999754333
No 497
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.83 E-value=0.013 Score=42.87 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=17.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
..-|+|.|.+||||||+++.|..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998854
No 498
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.82 E-value=0.021 Score=41.32 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 027985 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (216)
Q Consensus 15 ~~~i~v~G~~~sGKstli~~l~~ 37 (216)
..-|+|.|.+|+||||+++.|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46789999999999999998853
No 499
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.82 E-value=0.016 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC
Q 027985 14 YLIKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 14 ~~~~i~v~G~~~sGKstli~~l~~~ 38 (216)
....|+|.|++|+|||+|++.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998754
No 500
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.82 E-value=0.016 Score=47.26 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027985 16 IKLLLIGDSGVGKSCLLLRFSDD 38 (216)
Q Consensus 16 ~~i~v~G~~~sGKstli~~l~~~ 38 (216)
-.|+++|++|+|||+|++.+.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999998763
Done!