Query 027989
Match_columns 216
No_of_seqs 143 out of 566
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 06:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ytm_A Phosphoenolpyruvate car 100.0 1.7E-52 5.7E-57 400.0 18.5 190 19-215 2-226 (532)
2 2olr_A Phosphoenolpyruvate car 100.0 6E-51 2E-55 389.3 18.3 184 21-215 9-233 (540)
3 1ii2_A Phosphoenolpyruvate car 100.0 3.3E-51 1.1E-55 390.5 15.3 177 33-215 2-205 (524)
4 1j3b_A ATP-dependent phosphoen 100.0 1.4E-47 4.9E-52 365.8 16.3 186 23-215 3-217 (529)
5 2jmk_A Hypothetical protein TA 35.3 39 0.0013 25.5 3.8 30 169-200 67-96 (111)
6 2zci_A Phosphoenolpyruvate car 26.8 4.1E+02 0.014 25.8 10.2 121 70-197 101-232 (610)
7 1pyo_A Caspase-2; apoptosis, c 24.8 91 0.0031 24.9 4.6 92 12-108 52-161 (167)
8 3ijw_A Aminoglycoside N3-acety 24.6 49 0.0017 28.7 3.2 68 18-85 18-100 (268)
9 1qtn_A Caspase-8; apoptosis, d 19.7 61 0.0021 25.8 2.6 92 12-108 49-157 (164)
10 3moe_A Phosphoenolpyruvate car 19.2 67 0.0023 31.3 3.1 119 70-196 116-247 (624)
No 1
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=100.00 E-value=1.7e-52 Score=399.96 Aligned_cols=190 Identities=13% Similarity=0.152 Sum_probs=178.5
Q ss_pred hhhhhhhhCCCCcCcceeecCChHHHHHhh---------ccccccCCceEE--------------EEecCCC----C---
Q 027989 19 GLNWALAGRGVVVNDKAFQNLTTSELQQKG---------ATIAESLSGLPV--------------YVRGNLL----G--- 68 (216)
Q Consensus 19 ~ln~~L~~~gi~~~~~v~~Nls~~~L~e~~---------eg~l~~~Gal~v--------------iV~~~~t----~--- 68 (216)
.|.+.|+.+||++..++|||+++++|+|++ ||.++++|++++ ||+++.+ |
T Consensus 2 ~~~~~~~~~g~~~~~~i~~n~~~~~L~e~a~~~~~~~~~eg~l~~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~i~w~~~ 81 (532)
T 1ytm_A 2 SLSESLAKYGITGATNIVHNPSHEELFAAETQASLEGFEKGTVTEMGAVNVMTGVYTGRSPKDKFIVKNEASKEIWWTSD 81 (532)
T ss_dssp CHHHHHHHHTCCCCSEEEESCCHHHHHHHHTCTTCCGGGCEEECTTSSEEECCTTCCSBCGGGEEEECSGGGTTSCCCCS
T ss_pred ccccchHhcCCCCCCeEEECCCHHHHHHHHHhhccCCcccceecCCCCEEEcCCCcccCCCCceEEeCCCCccccccccc
Confidence 466889999999988999999999999985 688999999999 8877655 6
Q ss_pred --C--CcCCCHHHHHHHHHHHHHHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCCCCCe
Q 027989 69 --G--SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPL 144 (216)
Q Consensus 69 --~--n~pis~e~F~~L~~~v~~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f~pdf 144 (216)
+ |+|+++++|+.|+++|.+||++ +++||+|+++|+||+||++||+|||+|||+||++||||||+.+|+++|+|||
T Consensus 82 ~~~~~n~~~~~e~f~~l~~~~~~~l~~-k~l~v~d~~~G~d~~~~~~vr~it~~a~~~lf~~nLf~rp~~ee~~~f~pd~ 160 (532)
T 1ytm_A 82 EFKNDNKPVTEEAWAQLKALAGKELSN-KPLYVVDLFCGANENTRLKIRFVMEVAWQAHFVTNMFIRPTEEELKGFEPDF 160 (532)
T ss_dssp SSCCSCEEECHHHHHHHHHHHHHHHSS-SEEEEEEEEESSCTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHTTCCCSE
T ss_pred ccCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEEEeeCChhhceeEEEEeCHHHHHHHHHHhccCCChHHhccCCCCE
Confidence 4 7899999999999999999999 5899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCC-CCCCCCccCCcCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989 145 TVYVTTS-ISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA 215 (216)
Q Consensus 145 TI~~aP~-f~adp~~~~Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~ 215 (216)
|||++|+ |+++|..+ |++| +++|++|+++++++||||+ |+|||||++||+|||++|++|+||||+
T Consensus 161 ~i~~~p~~f~~~~~~~-G~~s---~~~v~~n~~~~~~~I~gt~--Y~GemKK~~ftl~n~~~~~~G~L~~H~ 226 (532)
T 1ytm_A 161 VVLNASKAKVENFKEL-GLNS---ETAVVFNLAEKMQIILNTW--YGGEMKKGMFSMMNFYLPLQGIAAMHC 226 (532)
T ss_dssp EEEEETTCCCTTTTTT-TCSS---SCEEEEETTTTEEEEESCC--CTTHHHHHHHHHHHHHTGGGTCEEEEE
T ss_pred EEEECCccccCCcccC-CCCC---ceEEEEECCCCEEEEeCCc--cCchhhHhHHHHHHHHHHHCCcEeecC
Confidence 9999999 99998554 9999 6999999999999999999 799999999999999999999999995
No 2
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=100.00 E-value=6e-51 Score=389.25 Aligned_cols=184 Identities=16% Similarity=0.207 Sum_probs=174.0
Q ss_pred hhhhhhCCCCcCcceeecCChHHHHHhh---------ccccccCCceEE--------------EEecCCC-----C-C--
Q 027989 21 NWALAGRGVVVNDKAFQNLTTSELQQKG---------ATIAESLSGLPV--------------YVRGNLL-----G-G-- 69 (216)
Q Consensus 21 n~~L~~~gi~~~~~v~~Nls~~~L~e~~---------eg~l~~~Gal~v--------------iV~~~~t-----~-~-- 69 (216)
...|+.+||++..++|||+++++|+|++ ||.++++|++++ ||+++.+ | +
T Consensus 9 ~~~~~~~gi~~~~~v~~n~~~~~L~e~al~~~~~~~eeg~l~~~Gal~~~tg~~tgRsp~dk~Iv~~~~~~~~i~w~~~~ 88 (540)
T 2olr_A 9 PQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKG 88 (540)
T ss_dssp HHHHHHTTCCCCCCEEESCCHHHHHHHHHCTTCCGGGCEEECTTSCEEECCCSCSSCCGGGEEEECSTTTTTTSCCTTSS
T ss_pred ccchhhcCCCCCCeEEeCCCHHHHHHHHHhcCCCccccceecCCCCEEEcCCCcccCCCCceEEeCCCCCcccccccccc
Confidence 4578999999988999999999999995 689999999999 8888766 4 3
Q ss_pred -----CcCCCHHHHHHHHHHHHHHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCCCCCe
Q 027989 70 -----SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPL 144 (216)
Q Consensus 70 -----n~pis~e~F~~L~~~v~~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f~pdf 144 (216)
|+|+++++|+.|+++|.+||++ +++||+|+++|+||+||++||+|||+|||+||++||||||+.+|+++|+|||
T Consensus 89 ~~~~~N~~~~~e~f~~l~~~~~~~l~~-k~lyv~d~~~G~d~~~~~~vr~ite~a~~alf~~nLf~rp~~ee~~~~~pd~ 167 (540)
T 2olr_A 89 KGKNDNKPLSPETWQHLKGLVTRQLSG-KRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDF 167 (540)
T ss_dssp SSCCSCEEECHHHHHHHHHHHHHHHTT-SCEEEEEEEESSSTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHHTCCCSE
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHcC-CCEEEEeeeeeCChhhceeEEEEeCHHHHHHHHHHhhcCCChHHhcCCCCCE
Confidence 6899999999999999999999 5899999999999999999999999999999999999999999999999999
Q ss_pred EEEEc-----CCCCCCCCccCCcCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989 145 TVYVT-----TSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA 215 (216)
Q Consensus 145 TI~~a-----P~f~adp~~~~Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~ 215 (216)
|||++ |+|+++ |++| +++|++|+++++++||||+ |+|||||++||+|||+||++|+||||+
T Consensus 168 ~i~~~~~~~~p~f~~~-----G~~s---~~~v~~~~~~~~~~I~Gt~--Y~GemKK~~ftl~n~~l~~~G~L~mH~ 233 (540)
T 2olr_A 168 IVMNGAKCTNPQWKEQ-----GLNS---ENFVAFNLTERMQLIGGTW--YGGEMKKGMFSMMNYLLPLKGIASMHC 233 (540)
T ss_dssp EEEEETTCCCTTTTTT-----TCSS---SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHTGGGTCEEECE
T ss_pred EEEEeccCCCCCcccC-----CccC---ccEEEEEccCCeEEEeCCc--CchHhhhhHHHHhHHHHHHCCcEeecc
Confidence 99999 999987 9999 6999999999999999999 899999999999999999999999995
No 3
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=100.00 E-value=3.3e-51 Score=390.52 Aligned_cols=177 Identities=19% Similarity=0.229 Sum_probs=165.8
Q ss_pred cceeecCChHHHHHhh----cc-ccccCCceEE--------------EEecCCC-----CC--CcCCCHHHHHHHHHHHH
Q 027989 33 DKAFQNLTTSELQQKG----AT-IAESLSGLPV--------------YVRGNLL-----GG--SSDISKAQYAKLLKQVT 86 (216)
Q Consensus 33 ~~v~~Nls~~~L~e~~----eg-~l~~~Gal~v--------------iV~~~~t-----~~--n~pis~e~F~~L~~~v~ 86 (216)
.++|||+++++|+|++ || .++++|+|++ ||+++.+ |+ |+|+++++|+.|+++|.
T Consensus 2 ~~v~~n~~~~eL~e~A~~~~eg~~lt~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~~i~w~~~n~~~~~e~f~~l~~~~~ 81 (524)
T 1ii2_A 2 PTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGKVNMKLSEESFARVRKIAK 81 (524)
T ss_dssp CEEEESCCHHHHHHHHHHHCTTCEECTTSCEEECCTTCSSBCGGGEEEECCHHHHTTSCBTTTBCEECHHHHHHHHHHHH
T ss_pred CeeEeCCCHHHHHHHHHHhCCCcEEcCCCCEEEecCcccCCCcCceEEeCCCCCccccccCcCcccCCHHHHHHHHHHHH
Confidence 3689999999999995 68 8999999999 8877754 66 79999999999999999
Q ss_pred HHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCC-CCCeEEEEcCCCCCCCCccCCcCCC
Q 027989 87 AHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHD-SCPLTVYVTTSISPGVVNAVGLRAQ 165 (216)
Q Consensus 87 ~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f-~pdfTI~~aP~f~adp~~~~Gt~Se 165 (216)
+||++++++||+|+++|+||+||++|||||+.|||+||++|||+||+.+|+.+| +||||||++|+|+++|.. +||+|
T Consensus 82 ~~l~~k~~l~v~d~~~G~d~~~~~~vrvit~~a~~~lf~~nl~~rp~~~e~~~fg~pd~~i~~~p~f~~~~~~-~G~~s- 159 (524)
T 1ii2_A 82 EFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADPSI-PGLTS- 159 (524)
T ss_dssp HHHHTSSEEEEEEEEECSSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETTSCCCTTS-TTCCS-
T ss_pred HHHcCCCcEEEEeeeeecChhhcccEEEEECHHHHHHHHHHhhccCCHHHhcccCCCCEEEEeCCCccCCccc-CCcCc-
Confidence 999995349999999999999999999999999999999999999998999999 999999999999999855 59999
Q ss_pred CCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989 166 GDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA 215 (216)
Q Consensus 166 ~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~ 215 (216)
++||++|+++++++|+||+ |+|||||++||+|||++|++|+||||+
T Consensus 160 --~~~v~~~~~~~~~~I~Gt~--Y~GemKK~~ftl~n~~~~~~g~L~~H~ 205 (524)
T 1ii2_A 160 --TTCVALNFKTREQVILGTE--YAGEMKKGILTVMFELMPQMNHLCMHA 205 (524)
T ss_dssp --SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHHHHTTCEEESE
T ss_pred --ccEEEEECCCCeEEEECCc--chHHHHHHHHHHHHHHHHHCCcEeecc
Confidence 6999999999999999999 899999999999999999999999995
No 4
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=100.00 E-value=1.4e-47 Score=365.77 Aligned_cols=186 Identities=20% Similarity=0.258 Sum_probs=170.2
Q ss_pred hhhhCCCCcCcceeecCChHHHHHhh----ccccccCCceEE--------------EEecCCC-----CC--CcCCCHHH
Q 027989 23 ALAGRGVVVNDKAFQNLTTSELQQKG----ATIAESLSGLPV--------------YVRGNLL-----GG--SSDISKAQ 77 (216)
Q Consensus 23 ~L~~~gi~~~~~v~~Nls~~~L~e~~----eg~l~~~Gal~v--------------iV~~~~t-----~~--n~pis~e~ 77 (216)
.|+.+||.+..++|||++.++|+|++ +|.++++|++++ ||+++.+ |+ |++++++.
T Consensus 3 ~~~~~~l~~~~~v~~n~~~~~l~e~a~~~g~g~~~~~g~~~~~tg~~tgRsp~~~fIv~~~~~~~~~~w~~~n~~~~~e~ 82 (529)
T 1j3b_A 3 RLEALGIHPKKRVFWNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAPEA 82 (529)
T ss_dssp CCGGGTCCCSSCEEESCCHHHHHHHHHHTTSCEECTTSCEEECCTTCCSCCGGGEEEECCTTTTTTSCBTTTBEEECHHH
T ss_pred chhhccCCCCCeEEECCChHHHHHHHHHcCCCEECCCCCEEeCCCCcccCCCCceEEeCCCCcCCccccccccCcCCHHH
Confidence 47889999888999999999999985 889999999988 8887755 55 78999999
Q ss_pred HHHHHHHHHHHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCC----ccccCCCCCCeEEEEcCCCC
Q 027989 78 YAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTP----SRAVSHDSCPLTVYVTTSIS 153 (216)
Q Consensus 78 F~~L~~~v~~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~----~~el~~f~pdfTI~~aP~f~ 153 (216)
|+.|++++.+||++ +++||+|+++|+|+.+++++|+||++|||+||++||||||. .+|+++|+|||+||++|+|+
T Consensus 83 f~~l~~~~~~~m~g-r~lyV~~~~~G~~~~~~~~~~~itd~a~~~lf~~~m~~rp~~~~~~~el~~~~pd~~i~~~p~f~ 161 (529)
T 1j3b_A 83 FEALYQRVVQYLSE-RDLYVQDLYAGADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQ 161 (529)
T ss_dssp HHHHHHHHHHHHHT-SCEEEEEEEECSSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CCCCSEEEEEETTCC
T ss_pred HHHHHHHHHHHhcC-CcEEEEEEeeeCCcccCeeEEEEcChHHHHHHHHHHhcccCcccchhhhccCCCCEEEEeCCCcc
Confidence 99999999999999 58999999999999999999999999999999999999998 78999999999999999999
Q ss_pred CCCCccCCcCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989 154 PGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA 215 (216)
Q Consensus 154 adp~~~~Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~ 215 (216)
++| ..+||+| +++|++|+++|+|+|+||+ |+|||||++|++|||++|++|+||||+
T Consensus 162 ~~~-~~~G~~s---~~~i~~~~~~~~i~i~Gt~--Y~Ge~KK~~l~i~~~~~~~~G~L~~H~ 217 (529)
T 1j3b_A 162 AVP-ERDGTRS---EVFVGISFQRRLVLIVGTK--YAGEIKKSIFTVMNYLMPKRGVFPMHA 217 (529)
T ss_dssp CCH-HHHCCSS---SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHGGGGTCEEEEC
T ss_pred cCc-ccCCCCC---ceEEEEECccCEEEEeCCc--cCcchHHHHHHHHHHHHHHCCeEeccc
Confidence 997 4459999 6999999999999999999 899999999999999999999999995
No 5
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=35.28 E-value=39 Score=25.55 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=27.0
Q ss_pred eEEEEecccCeEEEecCCCCccchhhhHHHHh
Q 027989 169 GFIAADIERSSLILCGKGFSDANGVKEALAAL 200 (216)
Q Consensus 169 ~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsv 200 (216)
+||+||=.+|++-|.=|+ --|.+|++|=.+
T Consensus 67 GFvviN~dKK~mSvsFsd--~~~~~K~~i~ei 96 (111)
T 2jmk_A 67 GFVVVNADKKLMSVSFSD--IDENMKKVIKAT 96 (111)
T ss_dssp EEEEEETTTTEEEEEECS--CCTTHHHHHHHH
T ss_pred EEEEEecCCeEEEEEeeh--hhhhHHHHHHHH
Confidence 699999999999999999 689999998655
No 6
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=26.85 E-value=4.1e+02 Score=25.83 Aligned_cols=121 Identities=10% Similarity=0.104 Sum_probs=78.9
Q ss_pred CcCCCHHHH-HHHHHHHHHHHcCCCceEeEeeeecC--CcCCcceEEEEcchhhhHHhhhhcCCCCC--ccccCCCCCCe
Q 027989 70 SSDISKAQY-AKLLKQVTAHLSSIANVFVQDGAVGS--SSECDAKVRVISDSPSAVLKLSSILWKTP--SRAVSHDSCPL 144 (216)
Q Consensus 70 n~pis~e~F-~~L~~~v~~yL~~~~~lyV~D~~aGa--d~~~rl~VRvIte~AwhaLF~~nmfirp~--~~el~~f~pdf 144 (216)
|+-++++.+ ..|.+++..=+++ +.+||.=-.-|- +|-..+.|- ||++||-.+=+|-|...-. -+++..-..=+
T Consensus 101 nnw~~p~e~~~~l~~~f~G~M~G-RTMYViPfsMGP~gsp~s~~GVe-iTDS~YVv~smrIMtR~g~~v~~~lg~~~~Fv 178 (610)
T 2zci_A 101 NNWAPPQAMKDEMSKHYAGSMKG-RTMYVVPFCMGPISDPDPKLGVQ-LTDSEYVVMSMRIMTRMGIEALDKIGANGSFV 178 (610)
T ss_dssp SCCCCHHHHHHHHHHHHTTTTTT-SEEEEEEEEESCTTCSSCEEEEE-EESCHHHHHHHHHHSEESHHHHHHHTTTCCCE
T ss_pred cCccCHHHHHHHHHHhCCcccCC-CEEEEEeeecCCCCCCcccceeE-eeCCHHHHHHHHHHHhcCHHHHHHhCCCCCee
Confidence 678999988 4455666667788 689999877776 566666665 7999999887777764321 12332211123
Q ss_pred EEEEcCCCCCCCCccC---CcCCCCCCeEEEEecccCeEEEecCCCCccch---hhhHH
Q 027989 145 TVYVTTSISPGVVNAV---GLRAQGDNGFIAADIERSSLILCGKGFSDANG---VKEAL 197 (216)
Q Consensus 145 TI~~aP~f~adp~~~~---Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGE---iKKsi 197 (216)
.-+|+=+....+-+.| =++. +.+|+..-+.|.|..=|++ |+|+ =||.+
T Consensus 179 ~~vHSvG~pl~~~~~dv~wPc~~---~~~I~h~pe~r~I~S~GSg--YGGNaLLGKKcf 232 (610)
T 2zci_A 179 RCLHSVGAPLEPGQEDVAWPCND---TKYITQFPETKEIWSYGSG--YGGNAILAKKCY 232 (610)
T ss_dssp EEEEECSCCCCSSCCCCSSCCCS---SCEEEEETTTTEEEEESCC--SHHHHCTCCCCC
T ss_pred eeecccCCcCCCCCcCCCCCCCC---ceEEEEecCcCeEEEecCC--cCcchhhhhHHH
Confidence 3455544332221111 1333 5899999999999999999 7898 56643
No 7
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=24.77 E-value=91 Score=24.85 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=54.9
Q ss_pred CCCCccc---hhhhhhhhCCCCcCcceeecCChHHHHHh----hc-cccccCCceEEEEecCC----C-CC-CcCCCHHH
Q 027989 12 PGRAFSY---GLNWALAGRGVVVNDKAFQNLTTSELQQK----GA-TIAESLSGLPVYVRGNL----L-GG-SSDISKAQ 77 (216)
Q Consensus 12 ~~~g~~y---~ln~~L~~~gi~~~~~v~~Nls~~~L~e~----~e-g~l~~~Gal~viV~~~~----t-~~-n~pis~e~ 77 (216)
+|.|-+. .|...++.+|... .++.||+..++.+. ++ -..+....++|++=... . +. .++++.+
T Consensus 52 ~R~Gt~~D~~~L~~~f~~LgF~V--~~~~dlt~~em~~~l~~~~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~~~v~l~- 128 (167)
T 1pyo_A 52 FRSGGDVDHSTLVTLFKLLGYDV--HVLCDQTAQEMQEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQ- 128 (167)
T ss_dssp CCTTHHHHHHHHHHHHHHTTEEE--EEEESCCHHHHHHHHHHHHTCGGGGTSSEEEEEEESCEETTEEECTTSCEEEHH-
T ss_pred cCCCcHHHHHHHHHHHHHCCCEE--EEeeCCCHHHHHHHHHHhhhhhhccCCCEEEEEeCCCCCCCeEEEeCCCEEcHH-
Confidence 3555433 4566678889875 67999999998887 23 22344455555331111 1 22 3456554
Q ss_pred HHHHHHHHH----HHHcCCCceEeEeeeecCCcCC
Q 027989 78 YAKLLKQVT----AHLSSIANVFVQDGAVGSSSEC 108 (216)
Q Consensus 78 F~~L~~~v~----~yL~~~~~lyV~D~~aGad~~~ 108 (216)
.|+.-.. .-|.+|++||+.++.=|.....
T Consensus 129 --~i~~~F~~~~CpsL~gKPKlffiQACRG~~~d~ 161 (167)
T 1pyo_A 129 --EVFQLFDNANCPSLQNKPKMFFIQACRGDETDR 161 (167)
T ss_dssp --HHHHHTSTTTCGGGTTSCEEEEEESCSSSBCBC
T ss_pred --HHHHHhcccCChhHcCCCeEEEEECCCCCCCCC
Confidence 3333332 2477888899999887765443
No 8
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=24.63 E-value=49 Score=28.73 Aligned_cols=68 Identities=6% Similarity=-0.015 Sum_probs=44.8
Q ss_pred chhhhhhhhCCCCcCcce--eecC--------ChHHHHHhhccccccCCceEEEE-----ecCCCCCCcCCCHHHHHHHH
Q 027989 18 YGLNWALAGRGVVVNDKA--FQNL--------TTSELQQKGATIAESLSGLPVYV-----RGNLLGGSSDISKAQYAKLL 82 (216)
Q Consensus 18 y~ln~~L~~~gi~~~~~v--~~Nl--------s~~~L~e~~eg~l~~~Gal~viV-----~~~~t~~n~pis~e~F~~L~ 82 (216)
-+|-..|..+||.+...+ |-.| .+..+++.=...+..+|.|++-. .|+..|.+.|++++-++.+.
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~~lG~v~gg~~~vi~AL~~~vg~~GTLvmPt~t~~~~dp~~w~~ppvp~~~~~~ir 97 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLSSIGWISGGAVAVVEALMEVITEEGTIIMPTQSSDLSDPKHWSRPPVPEEWWQIIR 97 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTGGGCCBTTHHHHHHHHHHHHHCTTSEEEEECCCGGGSCGGGCCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEechHHhCCCCCCHHHHHHHHHHHhCCCCeEEEeccccccCChhhhcCCCCcHHHHHHHH
Confidence 367788899999886544 3233 23455554355567789988821 23444888899999887777
Q ss_pred HHH
Q 027989 83 KQV 85 (216)
Q Consensus 83 ~~v 85 (216)
+.+
T Consensus 98 ~~~ 100 (268)
T 3ijw_A 98 DNV 100 (268)
T ss_dssp HHS
T ss_pred hhC
Confidence 654
No 9
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=19.69 E-value=61 Score=25.77 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=55.1
Q ss_pred CCCCccc---hhhhhhhhCCCCcCcceeecCChHHHHHhh----ccccccCCceEEEEecCCC-----CC-CcCCCHHHH
Q 027989 12 PGRAFSY---GLNWALAGRGVVVNDKAFQNLTTSELQQKG----ATIAESLSGLPVYVRGNLL-----GG-SSDISKAQY 78 (216)
Q Consensus 12 ~~~g~~y---~ln~~L~~~gi~~~~~v~~Nls~~~L~e~~----eg~l~~~Gal~viV~~~~t-----~~-n~pis~e~F 78 (216)
.|.|-+. .|-..++.+|... .+|.|++..++.+.- +-..+....++|++=.... +. .++++.+.
T Consensus 49 ~R~Gt~~D~~~L~~~f~~LgF~V--~~~~dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~~~v~i~~- 125 (164)
T 1qtn_A 49 DRNGTHLDAGALTTTFEELHFEI--KPHDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYE- 125 (164)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCEE--EEEESCCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEETTEEECTTSCEEEHHH-
T ss_pred CCCCcHHHHHHHHHHHHHCCCEE--EEecCCCHHHHHHHHHHHHHhhccCCCEEEEEeCCCCCCCEEEeeCCCEeeHHH-
Confidence 5666544 3556678889885 779999999988872 2223445566653311111 22 34555533
Q ss_pred HHHHHHHH----HHHcCCCceEeEeeeecCCcCC
Q 027989 79 AKLLKQVT----AHLSSIANVFVQDGAVGSSSEC 108 (216)
Q Consensus 79 ~~L~~~v~----~yL~~~~~lyV~D~~aGad~~~ 108 (216)
|+.-.. .-|.+|++||+.++.=|.....
T Consensus 126 --i~~~F~~~~CpsL~gKPKlFfiQACRG~~~d~ 157 (164)
T 1qtn_A 126 --LTSQFTGLKCPSLAGKPKVFFIQACQGDNYQK 157 (164)
T ss_dssp --HHGGGSTTTCGGGTTSCEEEEEESCSSSBCBC
T ss_pred --HHHHhccccChhhcCCCeEEEEECCCCCCccC
Confidence 332222 2477888899999888865443
No 10
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=19.15 E-value=67 Score=31.35 Aligned_cols=119 Identities=14% Similarity=0.201 Sum_probs=75.1
Q ss_pred CcCCCHHHHHH-HHHHHHHHHcCCCceEeEeeeecC--CcCCcceEEEEcchhhhHHhhhhcCCCCC--ccccCCCCCCe
Q 027989 70 SSDISKAQYAK-LLKQVTAHLSSIANVFVQDGAVGS--SSECDAKVRVISDSPSAVLKLSSILWKTP--SRAVSHDSCPL 144 (216)
Q Consensus 70 n~pis~e~F~~-L~~~v~~yL~~~~~lyV~D~~aGa--d~~~rl~VRvIte~AwhaLF~~nmfirp~--~~el~~f~pdf 144 (216)
|+-++++.+.+ |.+++..=+++ +.+||.=-.-|- +|-..+.|- ||+++|-.+=+|-|...-. -+.+.+ . +|
T Consensus 116 nnwm~p~e~~~~l~~~f~G~M~G-RTMYViPFsMGP~GSp~s~~GVe-iTDS~YVv~smrIMtR~g~~vld~lg~-~-~F 191 (624)
T 3moe_A 116 GRWMSEEDFEKAFNARFPGCMKG-RTMYVIPFSMGPLGSPLAKIGIE-LTDSPYVVASMRIMTRMGTSVLEALGD-G-EF 191 (624)
T ss_dssp CCEECHHHHHHHHHTTSTTTTTT-SEEEEEEEEESCSSCTTCEEEEE-EESCHHHHHHHHHHSEESHHHHHHHTT-C-CC
T ss_pred cccCCHHHHHHHHHhhCcccccC-CeEEEEeeecCCCCCCccceeEE-ccCcHHHHHhHHHHhhCCHHHHHhhcC-C-Ce
Confidence 56789988854 44555666677 689999877776 455555554 8999999887777764211 122222 1 33
Q ss_pred -EEEEcCCCCCCCCccC----CcCCCCCCeEEEEecccCeEEEecCCCCccch---hhhH
Q 027989 145 -TVYVTTSISPGVVNAV----GLRAQGDNGFIAADIERSSLILCGKGFSDANG---VKEA 196 (216)
Q Consensus 145 -TI~~aP~f~adp~~~~----Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGE---iKKs 196 (216)
.-+|+=+-...+-..+ =++-+ .++|+.+-+.|.|..=|++ |+|. =||.
T Consensus 192 v~clHSvG~pl~~~~~~v~~Wpcnp~--k~~I~h~pe~r~I~S~GSg--YGGNaLLGKKc 247 (624)
T 3moe_A 192 IKCLHSVGCPLPLKKPLVNNWACNPE--LTLIAHLPDRREIISFGSG--YGGNSLLGKKC 247 (624)
T ss_dssp EEEEEECSCCSSCSSCCBTTBCCCGG--GCEEEEEGGGTEEEEESCC--SHHHHCTCCCC
T ss_pred eeeecccCCCCCCCCccCCCCCCCCC--ceEEEEecccCeEEEecCC--cCcchhhhHHH
Confidence 3455544332221110 02222 3699999999999999999 7897 5665
Done!