Query 027990
Match_columns 216
No_of_seqs 244 out of 1205
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 06:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 4E-25 1.4E-29 157.6 5.5 60 28-87 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 90.5 0.13 4.5E-06 37.7 2.3 27 24-52 3-30 (77)
3 1u3e_M HNH homing endonuclease 85.0 0.15 5.2E-06 41.1 -0.3 38 29-69 109-146 (174)
4 1z1b_A Integrase; protein-DNA 78.6 2.6 8.7E-05 35.5 5.0 41 31-75 15-55 (356)
5 3jtz_A Integrase; four strande 62.9 12 0.00041 27.1 4.9 44 32-75 28-75 (88)
6 3ju0_A Phage integrase; four s 44.4 28 0.00095 26.1 4.4 44 32-75 28-75 (108)
7 1uta_A FTSN, MSGA, cell divisi 36.3 27 0.00094 24.0 3.0 34 40-73 35-68 (81)
8 1x60_A Sporulation-specific N- 35.8 20 0.00067 24.4 2.1 23 51-73 46-68 (79)
9 2ftc_I Mitochondrial ribosomal 31.8 59 0.002 24.9 4.5 36 39-76 79-114 (118)
10 1b69_A Protein (integrase); in 26.9 88 0.003 22.1 4.3 22 26-47 9-30 (69)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.91 E-value=4e-25 Score=157.62 Aligned_cols=60 Identities=70% Similarity=1.193 Sum_probs=57.1
Q ss_pred ceeeeeeCCCCcEEEEEecCCC-CceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 027990 28 RYRGVRKRPWGRFAAEIRDPWK-KTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLN 87 (216)
Q Consensus 28 ~yRGV~~r~~GrW~A~I~~p~~-gk~i~LGtFdT~EEAArAYD~Aa~~l~G~~A~tNFp~s 87 (216)
+||||++++||||+|+|+++.+ |+++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999999999999999875 79999999999999999999999999999999999975
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=90.51 E-value=0.13 Score=37.66 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=21.8
Q ss_pred CCCCceeeeeeCC-CCcEEEEEecCCCCce
Q 027990 24 SPDIRYRGVRKRP-WGRFAAEIRDPWKKTR 52 (216)
Q Consensus 24 ~~~S~yRGV~~r~-~GrW~A~I~~p~~gk~ 52 (216)
...|+|.||+|.+ .+.|.|+-.+ +|++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~r 30 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASR 30 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeE
Confidence 4679999999887 4999999998 5654
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=85.02 E-value=0.15 Score=41.10 Aligned_cols=38 Identities=8% Similarity=-0.106 Sum_probs=29.5
Q ss_pred eeeeeeCCCCcEEEEEecCCCCceEecCCCCCHHHHHHHHH
Q 027990 29 YRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYD 69 (216)
Q Consensus 29 yRGV~~r~~GrW~A~I~~p~~gk~i~LGtFdT~EEAArAYD 69 (216)
++||.+...++|.+.|.. . +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 456655223679999988 5 6678999999999999964
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=78.63 E-value=2.6 Score=35.51 Aligned_cols=41 Identities=17% Similarity=0.033 Sum_probs=30.9
Q ss_pred eeeeCCCCcEEEEEecCCCCceEecCCCCCHHHHHHHHHHHHHHh
Q 027990 31 GVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSL 75 (216)
Q Consensus 31 GV~~r~~GrW~A~I~~p~~gk~i~LGtFdT~EEAArAYD~Aa~~l 75 (216)
||++++.|.|..+... +|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5777778999987665 788899996 8888877766554444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=62.92 E-value=12 Score=27.12 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=31.3
Q ss_pred eeeCCCC--cEEEEEecCCCCceEecCCCC--CHHHHHHHHHHHHHHh
Q 027990 32 VRKRPWG--RFAAEIRDPWKKTRVWLGTFD--SAEDAARAYDAAARSL 75 (216)
Q Consensus 32 V~~r~~G--rW~A~I~~p~~gk~i~LGtFd--T~EEAArAYD~Aa~~l 75 (216)
++..++| .|.-+.+...+.+++-||.|. |.++|...-+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4556654 488888874455678899997 5788877777766555
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=44.43 E-value=28 Score=26.14 Aligned_cols=44 Identities=27% Similarity=0.291 Sum_probs=30.3
Q ss_pred eeeCCCC--cEEEEEecCCCCceEecCCCC--CHHHHHHHHHHHHHHh
Q 027990 32 VRKRPWG--RFAAEIRDPWKKTRVWLGTFD--SAEDAARAYDAAARSL 75 (216)
Q Consensus 32 V~~r~~G--rW~A~I~~p~~gk~i~LGtFd--T~EEAArAYD~Aa~~l 75 (216)
++..++| .|.-+.+..++.+++-||.|. |..+|...-+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4556655 488888874445678899997 4777777766665555
No 7
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=36.29 E-value=27 Score=24.02 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=23.6
Q ss_pred EEEEEecCCCCceEecCCCCCHHHHHHHHHHHHH
Q 027990 40 FAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAAR 73 (216)
Q Consensus 40 W~A~I~~p~~gk~i~LGtFdT~EEAArAYD~Aa~ 73 (216)
+.+.|.....--+|++|.|.+.++|..+-++...
T Consensus 35 ~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 35 FDSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 3455554223357999999999999888766554
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=35.80 E-value=20 Score=24.44 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=18.7
Q ss_pred ceEecCCCCCHHHHHHHHHHHHH
Q 027990 51 TRVWLGTFDSAEDAARAYDAAAR 73 (216)
Q Consensus 51 k~i~LGtFdT~EEAArAYD~Aa~ 73 (216)
-+|++|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47889999999999888766554
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=31.79 E-value=59 Score=24.91 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=28.7
Q ss_pred cEEEEEecCCCCceEecCCCCCHHHHHHHHHHHHHHhc
Q 027990 39 RFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLR 76 (216)
Q Consensus 39 rW~A~I~~p~~gk~i~LGtFdT~EEAArAYD~Aa~~l~ 76 (216)
.|+|+|.. +..-+-++...+++.|..|...|+.+|=
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 39999986 5555556666889999999999998873
No 10
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=26.94 E-value=88 Score=22.07 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.4
Q ss_pred CCceeeeeeCCCCcEEEEEecC
Q 027990 26 DIRYRGVRKRPWGRFAAEIRDP 47 (216)
Q Consensus 26 ~S~yRGV~~r~~GrW~A~I~~p 47 (216)
..-+.|+++++.|+|+.++.+.
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~ 30 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDS 30 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECT
T ss_pred CccCCCeEEccCCcEEEEEEcC
Confidence 3456789999899999999984
Done!