Your job contains 1 sequence.
>027992
MLVMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDI
VVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI
YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLEN
GYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027992
(215 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2037015 - symbol:CKS "CMP-KDO synthetase" spec... 952 9.7e-96 1
UNIPROTKB|Q9KQX2 - symbol:kdsB "3-deoxy-manno-octulosonat... 366 1.2e-33 1
TIGR_CMR|VC_1875 - symbol:VC_1875 "3-deoxy-manno-octuloso... 366 1.2e-33 1
TIGR_CMR|GSU_1896 - symbol:GSU_1896 "3-deoxy-D-manno-octu... 354 2.3e-32 1
UNIPROTKB|P04951 - symbol:kdsB "3-deoxy-D-manno-octuloson... 339 8.8e-31 1
TIGR_CMR|SO_2478 - symbol:SO_2478 "3-deoxy-D-manno-octulo... 339 8.8e-31 1
TIGR_CMR|CJE_0904 - symbol:CJE_0904 "3-deoxy-D-manno-octu... 328 1.3e-29 1
TIGR_CMR|CPS_2128 - symbol:CPS_2128 "3-deoxy-D-manno-octu... 317 1.9e-28 1
TIGR_CMR|SPO_0038 - symbol:SPO_0038 "3-deoxy-D-manno-octu... 296 3.2e-26 1
TIGR_CMR|CBU_0479 - symbol:CBU_0479 "3-deoxy-D-manno-octu... 286 3.6e-25 1
UNIPROTKB|Q0BY57 - symbol:HNE_2908 "Putative 3-deoxy-D-ma... 225 1.1e-18 1
>TAIR|locus:2037015 [details] [associations]
symbol:CKS "CMP-KDO synthetase" species:3702 "Arabidopsis
thaliana" [GO:0008690 "3-deoxy-manno-octulosonate
cytidylyltransferase activity" evidence=IEA;IDA] [GO:0009103
"lipopolysaccharide biosynthetic process" evidence=IEA;ISS]
[GO:0016779 "nucleotidyltransferase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009860 "pollen tube growth"
evidence=IMP] [GO:0033468 "CMP-keto-3-deoxy-D-manno-octulosonic
acid biosynthetic process" evidence=IDA] [GO:0031307 "integral to
mitochondrial outer membrane" evidence=IDA] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
HAMAP:MF_00057 InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00358 EMBL:CP002684 GO:GO:0009555 GO:GO:0031307
GO:GO:0009860 GO:GO:0009103 EMBL:AC019018 EMBL:AJ505021
EMBL:AK317553 IPI:IPI00529090 RefSeq:NP_175708.2 UniGene:At.18072
HSSP:P04951 ProteinModelPortal:Q9C920 SMR:Q9C920 STRING:Q9C920
PRIDE:Q9C920 EnsemblPlants:AT1G53000.1 GeneID:841733
KEGG:ath:AT1G53000 TAIR:At1g53000 HOGENOM:HOG000007602
InParanoid:Q9C920 KO:K00979 OMA:NSGTERC PhylomeDB:Q9C920
ProtClustDB:PLN02917 BRENDA:2.7.7.38 Genevestigator:Q9C920
GO:GO:0008690 GO:GO:0033468 PANTHER:PTHR21485:SF4
TIGRFAMs:TIGR00466 Uniprot:Q9C920
Length = 290
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 179/203 (88%), Positives = 189/203 (93%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
+VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEKKYD+VVNIQGDEPLIE
Sbjct: 88 IVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEKKYDVVVNIQGDEPLIE 147
Query: 73 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
PEIIDGVVKALQ PDAVFSTAVTSLKPED DPNRVKCVVDN GYAIYFSRGLIPYNKS
Sbjct: 148 PEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNRGYAIYFSRGLIPYNKS 207
Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
GKVNP FPY+LHLGIQS+DS FLK+Y L PTPLQ EEDLEQLKVLENGYKMKVIKVDHE
Sbjct: 208 GKVNPDFPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLKVLENGYKMKVIKVDHE 267
Query: 193 AHGVDAPEDVEKIESFMRERNLS 215
AHGVD P+DVEKIES MRERN+S
Sbjct: 268 AHGVDTPDDVEKIESLMRERNMS 290
>UNIPROTKB|Q9KQX2 [details] [associations]
symbol:kdsB "3-deoxy-manno-octulosonate
cytidylyltransferase" species:243277 "Vibrio cholerae O1 biovar El
Tor str. N16961" [GO:0008690 "3-deoxy-manno-octulosonate
cytidylyltransferase activity" evidence=ISS] [GO:0009244
"lipopolysaccharide core region biosynthetic process" evidence=ISS]
HAMAP:MF_00057 InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009244 KO:K00979 BRENDA:2.7.7.38
GO:GO:0008690 GO:GO:0033468 PANTHER:PTHR21485:SF4
TIGRFAMs:TIGR00466 eggNOG:COG1212 OMA:RAPLPWA ProtClustDB:PRK05450
PIR:A82146 RefSeq:NP_231509.1 PDB:3OAM PDBsum:3OAM
ProteinModelPortal:Q9KQX2 SMR:Q9KQX2 DNASU:2613629 GeneID:2613629
KEGG:vch:VC1875 PATRIC:20082792 EvolutionaryTrace:Q9KQX2
Uniprot:Q9KQX2
Length = 252
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 85/207 (41%), Positives = 123/207 (59%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+++ATDDE++ + Q FG V MTS + ++GTER E + K+ D IVVN+QGDEPLI
Sbjct: 45 VIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYN 130
P II V L AA A +T ++ E + F+PN VK + D GYA+YFSR IP++
Sbjct: 105 PPAIIRQVADNL-AACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWD 163
Query: 131 KSG--KVNPQF--PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 186
+ K + P L H+GI +Y + F+ Y P+ L+ E LEQL+VL +G K+ V
Sbjct: 164 RDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHV 223
Query: 187 -IKVDHEAHGVDAPEDVEKIESFMRER 212
+ ++ GVD PED+E + + ER
Sbjct: 224 AVALEAPPAGVDTPEDLEVVRRIVAER 250
>TIGR_CMR|VC_1875 [details] [associations]
symbol:VC_1875 "3-deoxy-manno-octulosonate
cytidylyltransferase" species:686 "Vibrio cholerae O1 biovar El
Tor" [GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] HAMAP:MF_00057
InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009244 KO:K00979 BRENDA:2.7.7.38
GO:GO:0008690 GO:GO:0033468 PANTHER:PTHR21485:SF4
TIGRFAMs:TIGR00466 eggNOG:COG1212 OMA:RAPLPWA ProtClustDB:PRK05450
PIR:A82146 RefSeq:NP_231509.1 PDB:3OAM PDBsum:3OAM
ProteinModelPortal:Q9KQX2 SMR:Q9KQX2 DNASU:2613629 GeneID:2613629
KEGG:vch:VC1875 PATRIC:20082792 EvolutionaryTrace:Q9KQX2
Uniprot:Q9KQX2
Length = 252
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 85/207 (41%), Positives = 123/207 (59%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+++ATDDE++ + Q FG V MTS + ++GTER E + K+ D IVVN+QGDEPLI
Sbjct: 45 VIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYN 130
P II V L AA A +T ++ E + F+PN VK + D GYA+YFSR IP++
Sbjct: 105 PPAIIRQVADNL-AACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWD 163
Query: 131 KSG--KVNPQF--PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 186
+ K + P L H+GI +Y + F+ Y P+ L+ E LEQL+VL +G K+ V
Sbjct: 164 RDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHV 223
Query: 187 -IKVDHEAHGVDAPEDVEKIESFMRER 212
+ ++ GVD PED+E + + ER
Sbjct: 224 AVALEAPPAGVDTPEDLEVVRRIVAER 250
>TIGR_CMR|GSU_1896 [details] [associations]
symbol:GSU_1896 "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:243231 "Geobacter sulfurreducens PCA"
[GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] HAMAP:MF_00057
InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009103 HSSP:P04951
HOGENOM:HOG000007602 KO:K00979 OMA:NSGTERC GO:GO:0008690
GO:GO:0033468 PANTHER:PTHR21485:SF4 TIGRFAMs:TIGR00466
eggNOG:COG1212 ProtClustDB:PRK05450 RefSeq:NP_952945.2
ProteinModelPortal:Q74BY2 PRIDE:Q74BY2 GeneID:2686228
KEGG:gsu:GSU1896 PATRIC:22026657
BioCyc:GSUL243231:GH27-1932-MONOMER Uniprot:Q74BY2
Length = 250
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 82/202 (40%), Positives = 119/202 (58%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
+VVATDD++IA+ + FG V MTS GT+R E ++ +I+VN+QGDEPLIE
Sbjct: 46 VVVATDDDRIAQAVRGFGGRVEMTSRDHETGTDRLAEVASRIGA--EIIVNVQGDEPLIE 103
Query: 73 PEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPY-- 129
P +ID + L P T + ++ D PN VK V D GYA+YFSR +P+
Sbjct: 104 PAMIDEAIAPLAENPAVRMGTLKSRIRTLHDFLSPNVVKVVTDLEGYALYFSRSPLPFFR 163
Query: 130 NKSGKVNPQ-FPY--LL---HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
+K + + F LL H+G+ Y +FL + + PT L+L E LEQL+ LENG +
Sbjct: 164 DKWNDLKDESFASGRLLCYKHVGLYVYRRDFLMEFAKMPPTALELAEKLEQLRALENGCR 223
Query: 184 MKVIKVDHEAHGVDAPEDVEKI 205
++V++ HE+ GVD P D+EK+
Sbjct: 224 IRVVETAHESIGVDTPNDLEKV 245
>UNIPROTKB|P04951 [details] [associations]
symbol:kdsB "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:83333 "Escherichia coli K-12"
[GO:0033468 "CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic
process" evidence=IEA] [GO:0019294
"keto-3-deoxy-D-manno-octulosonic acid biosynthetic process"
evidence=IDA] [GO:0000287 "magnesium ion binding" evidence=IDA]
[GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_00057 InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737 GO:GO:0000287
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0019294 HOGENOM:HOG000007602
KO:K00979 GO:GO:0008690 GO:GO:0033468 PANTHER:PTHR21485:SF4
TIGRFAMs:TIGR00466 eggNOG:COG1212 OMA:RAPLPWA ProtClustDB:PRK05450
EMBL:J02614 PIR:A26322 RefSeq:NP_415438.1 RefSeq:YP_489190.1
PDB:1VH1 PDB:3K8D PDB:3K8E PDBsum:1VH1 PDBsum:3K8D PDBsum:3K8E
ProteinModelPortal:P04951 SMR:P04951 DIP:DIP-10066N IntAct:P04951
MINT:MINT-1224838 SWISS-2DPAGE:P04951 PRIDE:P04951
EnsemblBacteria:EBESCT00000001713 EnsemblBacteria:EBESCT00000016199
GeneID:12931016 GeneID:945539 KEGG:ecj:Y75_p0890 KEGG:eco:b0918
PATRIC:32117049 EchoBASE:EB0514 EcoGene:EG10519
BioCyc:EcoCyc:CPM-KDOSYNTH-MONOMER BioCyc:ECOL316407:JW0901-MONOMER
BioCyc:MetaCyc:CPM-KDOSYNTH-MONOMER EvolutionaryTrace:P04951
Genevestigator:P04951 Uniprot:P04951
Length = 248
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 80/204 (39%), Positives = 116/204 (56%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
++VATD E +A + G +V MT ++GTER E ++K D ++VN+QGDEP+I
Sbjct: 45 IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
II V L + + AV E+AF+PN VK V+D GYA+YFSR IP+++
Sbjct: 105 PATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 164
Query: 132 S----GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV- 186
G +L HLGI Y + F++ Y P+PL+ E LEQL+VL G K+ V
Sbjct: 165 DRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVA 224
Query: 187 IKVDHEAHGVDAPEDVEKIESFMR 210
+ + GVD PED+E++ + MR
Sbjct: 225 VAQEVPGTGVDTPEDLERVRAEMR 248
>TIGR_CMR|SO_2478 [details] [associations]
symbol:SO_2478 "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:211586 "Shewanella oneidensis MR-1"
[GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] HAMAP:MF_00057
InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0009103 HSSP:P04951
HOGENOM:HOG000007602 KO:K00979 OMA:NSGTERC GO:GO:0008690
GO:GO:0033468 PANTHER:PTHR21485:SF4 TIGRFAMs:TIGR00466
eggNOG:COG1212 ProtClustDB:PRK05450 RefSeq:NP_718065.1
ProteinModelPortal:Q8EEA9 GeneID:1170191 KEGG:son:SO_2478
PATRIC:23524575 Uniprot:Q8EEA9
Length = 245
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 77/198 (38%), Positives = 112/198 (56%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
+ VATDDE+I + FG V+MTS +GT+R N+A+ +L K D+V+N+QGD+PLI
Sbjct: 46 IYVATDDERIKSAVEGFGGKVVMTSPDAASGTDRINDAINQLGLKDDDLVINLQGDQPLI 105
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTS---LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIP 128
+P I+ V+ + P F A + + DP VK V DN YA+YFSR IP
Sbjct: 106 DPTSIEQVISLFERHPGE-FEMATLGYEIVNKAELDDPMHVKMVFDNDYYALYFSRARIP 164
Query: 129 YNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIK 188
+ + K +P HLG+ +Y F++ + L L+ E LEQL+ LE G+K+KV
Sbjct: 165 FGRDTK---DYPVYKHLGVYAYTRRFVQAFAALPLGRLEDLEKLEQLRALEYGHKIKVAI 221
Query: 189 VDHEAHGVDAPEDVEKIE 206
++ VD PED+ K E
Sbjct: 222 SAFDSIEVDTPEDIRKCE 239
>TIGR_CMR|CJE_0904 [details] [associations]
symbol:CJE_0904 "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:195099 "Campylobacter jejuni RM1221"
[GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] InterPro:IPR003329
InterPro:IPR004528 Pfam:PF02348 UniPathway:UPA00030
UniPathway:UPA00358 GO:GO:0005737 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0009103 HOGENOM:HOG000007602
KO:K00979 OMA:NSGTERC GO:GO:0008690 GO:GO:0033468
PANTHER:PTHR21485:SF4 TIGRFAMs:TIGR00466 eggNOG:COG1212
ProtClustDB:PRK05450 RefSeq:YP_178906.1 ProteinModelPortal:Q5HUX9
STRING:Q5HUX9 GeneID:3231417 KEGG:cjr:CJE0904 PATRIC:20043575
BioCyc:CJEJ195099:GJC0-924-MONOMER Uniprot:Q5HUX9
Length = 239
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 71/193 (36%), Positives = 113/193 (58%)
Query: 15 VATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEP 73
+A DDEK+ +++G + ++TS++ +GT+R NEA +KL K D I++N+Q DEP IE
Sbjct: 42 IALDDEKVLSIAKEYGLNAVLTSKNHESGTDRINEACKKLSLKDDEIIINVQADEPFIEC 101
Query: 74 EIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
E + + + D A ++ + E+A D N VK + D GYA+YFSR IPY +
Sbjct: 102 ENLLKFKEFASSCLDKKAFMASCYKKITQEEAMDSNLVKVLCDKEGYALYFSRAKIPYER 161
Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
N + + HLGI +Y L+ + L + L+ E LEQL+ +ENG K+K++++
Sbjct: 162 E---NYEESFKGHLGIYAYSVKALREFCSLLSSALERAEKLEQLRAIENGKKIKMLEIST 218
Query: 192 EAHGVDAPEDVEK 204
+ G+D ED EK
Sbjct: 219 TSMGIDTKEDYEK 231
>TIGR_CMR|CPS_2128 [details] [associations]
symbol:CPS_2128 "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] HAMAP:MF_00057
InterPro:IPR003329 InterPro:IPR004528 Pfam:PF02348
UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009103 HOGENOM:HOG000007602
KO:K00979 GO:GO:0008690 GO:GO:0033468 PANTHER:PTHR21485:SF4
TIGRFAMs:TIGR00466 RefSeq:YP_268854.1 ProteinModelPortal:Q483B3
SMR:Q483B3 STRING:Q483B3 GeneID:3522547 KEGG:cps:CPS_2128
PATRIC:21467371 eggNOG:COG1212 OMA:RAPLPWA
BioCyc:CPSY167879:GI48-2198-MONOMER Uniprot:Q483B3
Length = 280
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 80/215 (37%), Positives = 119/215 (55%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
++VATD++++A FGA+V T ++GTER E ++K + D I+VN+QGDEP I
Sbjct: 61 VIVATDNDEVAAVVNSFGAEVCKTRADHQSGTERLAEVMEKYQFSDDEIIVNVQGDEPFI 120
Query: 72 EPEIIDGVVKAL----QAAPDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIYFSRGL 126
P+ I V L Q++ A ST ++ D AF+PN VK ++D GYA+YFSR
Sbjct: 121 PPDNIAQVANNLANQQQSSHVARMSTLAINIDSVDEAFNPNAVKVILDKDGYALYFSRAT 180
Query: 127 IPYNKSGKVNPQFP-----------YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQL 175
IPY++ +N YL H+GI +Y + F+K Y + L+ E LEQL
Sbjct: 181 IPYDRERFLNSDATTEENIRAIGDFYLRHVGIYAYRAGFIKDYVNWPTSELEQVEALEQL 240
Query: 176 KVLENGYKMKV-IKVDH-EAHGVDAPEDVEKIESF 208
+VL G ++ V + H GVD PED+ K ++
Sbjct: 241 RVLYQGERIHVAVANSHVPVEGVDTPEDLAKARAY 275
>TIGR_CMR|SPO_0038 [details] [associations]
symbol:SPO_0038 "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] InterPro:IPR003329
InterPro:IPR004528 Pfam:PF02348 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0009103 HOGENOM:HOG000007602
KO:K00979 OMA:NSGTERC GO:GO:0008690 PANTHER:PTHR21485:SF4
ProtClustDB:PRK05450 RefSeq:YP_165311.1 ProteinModelPortal:Q5LWI2
GeneID:3196170 KEGG:sil:SPO0038 PATRIC:23373307 Uniprot:Q5LWI2
Length = 266
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 81/217 (37%), Positives = 114/217 (52%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
+VVATDD++I + FGA+V+MTS C NGTERC EA L +DIVVN+QGD PL
Sbjct: 51 VVVATDDDRIRAVAEGFGAEVVMTSSDCVNGTERCAEAHAVLGGGFDIVVNLQGDAPLTP 110
Query: 73 PEIIDGVVKALQAAPDAVFSTAVTSLKPE--DAFDPNR-------VKCVVDNHGYAIYFS 123
++ ++ L+AAP+A +T V + F +R V A+YFS
Sbjct: 111 HWFVEDLIAGLRAAPEADIATPVLRCDGMALNGFLNDRKHGRVGGTTAVFAADRSALYFS 170
Query: 124 RGLIPYNKSGKVNPQ-FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGY 182
+ +IP+ + P H+G+ +Y L YP PL+ E LEQL+ +ENG
Sbjct: 171 KEVIPFTSQIYADDAPTPVFHHVGVYAYRPGALADYPTWPMGPLETLEGLEQLRFMENG- 229
Query: 183 KMKVIKVDHEAHG-----VDAPEDVEKIESFMRERNL 214
KV+ V+ EA G ++ PEDV +IE M L
Sbjct: 230 -RKVLCVEVEARGRQFWELNNPEDVARIEEMMAAMGL 265
>TIGR_CMR|CBU_0479 [details] [associations]
symbol:CBU_0479 "3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:227377 "Coxiella burnetii RSA 493"
[GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0019294
"keto-3-deoxy-D-manno-octulosonic acid biosynthetic process"
evidence=ISS] HAMAP:MF_00057 InterPro:IPR003329 InterPro:IPR004528
Pfam:PF02348 UniPathway:UPA00030 UniPathway:UPA00358 GO:GO:0005737
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0009103
HOGENOM:HOG000007602 KO:K00979 GO:GO:0008690 GO:GO:0033468
PANTHER:PTHR21485:SF4 TIGRFAMs:TIGR00466 eggNOG:COG1212 OMA:RAPLPWA
RefSeq:NP_819514.2 PDB:3TQD PDBsum:3TQD ProteinModelPortal:Q83E52
PRIDE:Q83E52 GeneID:1208363 KEGG:cbu:CBU_0479 PATRIC:17929649
ProtClustDB:PRK05450 BioCyc:CBUR227377:GJ7S-476-MONOMER
EvolutionaryTrace:Q83E52 Uniprot:Q83E52
Length = 249
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 70/204 (34%), Positives = 116/204 (56%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+V+ATDD++I + + FGA V MTS ++GTER EA L + D I+V +QGDEPLI
Sbjct: 45 VVIATDDKRIRQVAEDFGAVVCMTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 130
P+ I + + L + ++ T + + ++ F+P+ K V++ YA+YFS IP+
Sbjct: 105 PPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWG 164
Query: 131 K---SGKVNPQF--PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMK 185
+ S K N Q + H+GI +Y FL+ Y P + E LEQL++L +G ++
Sbjct: 165 RDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEKMEALEQLRILWHGGRIH 224
Query: 186 VIKVDHEAH-GVDAPEDVEKIESF 208
++ + GVD ED+E++ ++
Sbjct: 225 MVVAKSKCPPGVDTEEDLERVRAY 248
>UNIPROTKB|Q0BY57 [details] [associations]
symbol:HNE_2908 "Putative 3-deoxy-D-manno-octulosonate
cytidylyltransferase" species:228405 "Hyphomonas neptunium ATCC
15444" [GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase
activity" evidence=ISS] [GO:0009244 "lipopolysaccharide core region
biosynthetic process" evidence=ISS] InterPro:IPR003329
InterPro:IPR004528 Pfam:PF02348 GO:GO:0005737 GO:GO:0009244
EMBL:CP000158 GenomeReviews:CP000158_GR HOGENOM:HOG000007602
KO:K00979 GO:GO:0008690 PANTHER:PTHR21485:SF4 eggNOG:COG1212
ProtClustDB:PRK05450 RefSeq:YP_761586.1 ProteinModelPortal:Q0BY57
STRING:Q0BY57 GeneID:4289023 KEGG:hne:HNE_2908 PATRIC:32218685
OMA:APCELEQ BioCyc:HNEP228405:GI69-2915-MONOMER Uniprot:Q0BY57
Length = 270
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 66/213 (30%), Positives = 107/213 (50%)
Query: 14 VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP 73
VVATDD +I + C+ +V+MT + +G++R A+ L D VVN+QGD P
Sbjct: 51 VVATDDTRILQYCRDNNINVVMTDPALPSGSDRALAAVDGLGMSPDFVVNLQGDAPFTPA 110
Query: 74 EIIDGVVKALQ------AAPDAVFS-TAVTSLKPEDAFDP-NRVKCVVDNHGYAIYFSRG 125
E + VV+AL+ A P S A+ L+ A P + V D G AI+FS+
Sbjct: 111 EHVVAVVEALEKSGTDAATPYIRLSWAALDQLRNHKAQTPFSGTTLVKDPKGRAIWFSKI 170
Query: 126 LIPYNKSG----KVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENG 181
++P + K+N P H+G+ + + L+ Y L + + E LEQL+++ENG
Sbjct: 171 ILPAIRKEPELRKLNDLSPVCQHVGLYGFRLDTLRRYCALPESYYERLEGLEQLRLIENG 230
Query: 182 YKMKVIKVDH---EAHGVDAPEDVEKIESFMRE 211
+ ++ ++V G+D ED+ E + E
Sbjct: 231 FSVQAVEVKPGKIAIPGIDTAEDIALAERLVAE 263
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.138 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 215 215 0.00087 112 3 11 22 0.38 33
32 0.50 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 577 (61 KB)
Total size of DFA: 176 KB (2103 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.78u 0.16s 20.94t Elapsed: 00:00:01
Total cpu time: 20.79u 0.16s 20.95t Elapsed: 00:00:01
Start: Thu May 9 21:28:38 2013 End: Thu May 9 21:28:39 2013