BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027992
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OAM|A Chain A, Crystal Structure Of Cytidylyltransferase From Vibrio
Cholerae
pdb|3OAM|B Chain B, Crystal Structure Of Cytidylyltransferase From Vibrio
Cholerae
pdb|3OAM|C Chain C, Crystal Structure Of Cytidylyltransferase From Vibrio
Cholerae
pdb|3OAM|D Chain D, Crystal Structure Of Cytidylyltransferase From Vibrio
Cholerae
Length = 252
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 121/207 (58%), Gaps = 8/207 (3%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+++ATDDE++ + Q FG V MTS + ++GTER E + K+ D IVVN+QGDEPLI
Sbjct: 45 VIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN- 130
P II V L A + + AV + F+PN VK + D GYA+YFSR IP++
Sbjct: 105 PPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDR 164
Query: 131 ----KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 186
K+ K Q P L H+GI +Y + F+ Y P+ L+ E LEQL+VL +G K+ V
Sbjct: 165 DNFAKADKAIVQ-PLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHV 223
Query: 187 -IKVDHEAHGVDAPEDVEKIESFMRER 212
+ ++ GVD PED+E + + ER
Sbjct: 224 AVALEAPPAGVDTPEDLEVVRRIVAER 250
>pdb|1VIC|A Chain A, Crystal Structure Of Cmp-kdo Synthetase
pdb|1VIC|B Chain B, Crystal Structure Of Cmp-kdo Synthetase
Length = 262
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 123/207 (59%), Gaps = 10/207 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
+++ATD+E +A+ + FGA+V MTS + +GTER E ++KL +I+VNIQGDEPLI
Sbjct: 45 VIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P I+ V L + S AV E+ F+PN VK + D GY +YFSR +IPY++
Sbjct: 105 PPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
Query: 132 SGKVNPQ--------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
+N Q YL H+GI +Y + F+K Y PT L+ E LEQL+VL NG +
Sbjct: 165 DQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGER 224
Query: 184 MKV-IKVDHEAHGVDAPEDVEKIESFM 209
+ V + + A GVD ED+EK+ + +
Sbjct: 225 IHVELAKEVPAVGVDTAEDLEKVRAIL 251
>pdb|3DUV|A Chain A, Crystal Structure Of 3-Deoxy-Manno-Octulosonate
Cytidylyltransferase From Haemophilus Influenzae
Complexed With The Substrate 3-Deoxy-Manno-Octulosonate
In The- Configuration
pdb|3DUV|B Chain B, Crystal Structure Of 3-Deoxy-Manno-Octulosonate
Cytidylyltransferase From Haemophilus Influenzae
Complexed With The Substrate 3-Deoxy-Manno-Octulosonate
In The- Configuration
Length = 262
Score = 140 bits (354), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 120/207 (57%), Gaps = 10/207 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
+++ATD+E +A+ + FGA+V TS + +GTER E ++KL +I+VNIQGDEPLI
Sbjct: 45 VIIATDNENVADVAKSFGAEVCXTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P I+ V L S AV E+ F+PN VK + D GY +YFSR +IPY++
Sbjct: 105 PPVIVRQVADNLAKFNVNXASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
Query: 132 S--------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
KV YL H+GI +Y + F+K Y PT L+ E LEQL+VL NG +
Sbjct: 165 DQFXNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGER 224
Query: 184 MKV-IKVDHEAHGVDAPEDVEKIESFM 209
+ V + + A GVD ED+EK+ + +
Sbjct: 225 IHVELAKEVPAVGVDTAEDLEKVRAIL 251
>pdb|1VH3|A Chain A, Crystal Structure Of Cmp-kdo Synthetase
pdb|1VH3|B Chain B, Crystal Structure Of Cmp-kdo Synthetase
pdb|1VH3|C Chain C, Crystal Structure Of Cmp-kdo Synthetase
Length = 262
Score = 140 bits (354), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 120/207 (57%), Gaps = 10/207 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
+++ATD+E +A+ + FGA+V TS + +GTER E ++KL +I+VNIQGDEPLI
Sbjct: 45 VIIATDNENVADVAKSFGAEVCXTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P I+ V L S AV E+ F+PN VK + D GY +YFSR +IPY++
Sbjct: 105 PPVIVRQVADNLAKFNVNXASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
Query: 132 S--------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
KV YL H+GI +Y + F+K Y PT L+ E LEQL+VL NG +
Sbjct: 165 DQFXNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGER 224
Query: 184 MKV-IKVDHEAHGVDAPEDVEKIESFM 209
+ V + + A GVD ED+EK+ + +
Sbjct: 225 IHVELAKEVPAVGVDTAEDLEKVRAIL 251
>pdb|3K8D|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8E|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
Length = 264
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 116/204 (56%), Gaps = 6/204 (2%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
++VATD E +A + G +V MT ++GTER E ++K D ++VN+QGDEP+I
Sbjct: 61 IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMI 120
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
II V L + + AV E+AF+PN VK V+D GYA+YFSR IP+++
Sbjct: 121 PATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 180
Query: 132 ----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV- 186
G +L HLGI Y + F++ Y P+PL+ E LEQL+VL G K+ V
Sbjct: 181 DRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVA 240
Query: 187 IKVDHEAHGVDAPEDVEKIESFMR 210
+ + GVD PED+E++ + MR
Sbjct: 241 VAQEVPGTGVDTPEDLERVRAEMR 264
>pdb|1VH1|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|B Chain B, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|C Chain C, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|D Chain D, Crystal Structure Of Cmp-Kdo Synthetase
Length = 256
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 112/204 (54%), Gaps = 6/204 (2%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
++VATD E +A + G +V T ++GTER E ++K D ++VN+QGDEP I
Sbjct: 45 IIVATDHEDVARAVEAAGGEVCXTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPXI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
II V L + AV E+AF+PN VK V+D GYA+YFSR IP+++
Sbjct: 105 PATIIRQVADNLAQRQVGXATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDR 164
Query: 132 ----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV- 186
G +L HLGI Y + F++ Y P+PL+ E LEQL+VL G K+ V
Sbjct: 165 DRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEXLEQLRVLWYGEKIHVA 224
Query: 187 IKVDHEAHGVDAPEDVEKIESFMR 210
+ + GVD PED+E++ + R
Sbjct: 225 VAQEVPGTGVDTPEDLERVRAEXR 248
>pdb|1H6J|A Chain A, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H6J|B Chain B, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H7E|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7E|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7F|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7F|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7G|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7G|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7H|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7H|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7T|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1H7T|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1GQ9|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQ9|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQC|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
pdb|1GQC|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
Length = 245
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 110/195 (56%), Gaps = 5/195 (2%)
Query: 15 VATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE 74
VATDD ++ + Q FG IMT +GT+R E + K+E DI +N+QGDEP+I P
Sbjct: 48 VATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKVEA--DIYINLQGDEPMIRPR 105
Query: 75 IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGK 134
++ +++ ++ P +T ++ +A +P+ VK VV+ A+YFSR IPY ++ +
Sbjct: 106 DVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAE 165
Query: 135 VNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH 194
+ YL H+GI +Y + L+ Y L + + E LEQL+++ G ++ +V
Sbjct: 166 ---KARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGP 222
Query: 195 GVDAPEDVEKIESFM 209
GVD P +EK+ + M
Sbjct: 223 GVDTPACLEKVRALM 237
>pdb|4FCU|A Chain A, 1.9 Angstrom Crystal Structure Of
3-Deoxy-Manno-Octulosonate Cytidylyltransferase (Kdsb)
From Acinetobacter Baumannii Without His- Tag Bound To
The Active Site
Length = 253
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 115/212 (54%), Gaps = 14/212 (6%)
Query: 10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQ-KLEKKYDIVVNIQGDE 68
F L VATDDE+IAE C+ G DV++TS +GT+R +E + K DI+VN+QGDE
Sbjct: 42 FDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDE 101
Query: 69 PLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLI 127
PL+ +++ V K L P+ ST + D F + VK V+ A+YFSR I
Sbjct: 102 PLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATI 161
Query: 128 PYNKSGKVNPQFPYL-----LHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGY 182
PY++ G + P L HLG+ +Y + L+ Y L+ E LEQL+VLENG+
Sbjct: 162 PYDRDGAKRDE-PTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGH 220
Query: 183 KMKVIKVDHE-AHGVDAPEDVEK-----IESF 208
++ + + GVD D+++ +ESF
Sbjct: 221 RIAIAVAEANLPPGVDTQADLDRLNNMPVESF 252
>pdb|3POL|A Chain A, 2.3 Angstrom Crystal Structure Of
3-deoxy-manno-octulosonate Cytidylyltransferase (kdsb)
From Acinetobacter Baumannii
Length = 276
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 117/214 (54%), Gaps = 18/214 (8%)
Query: 10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQ-KLEKKYDIVVNIQGDE 68
F L VATDDE+IAE C+ G DV++TS +GT+R +E + K DI+VN+QGDE
Sbjct: 65 FDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDE 124
Query: 69 PLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLI 127
PL+ +++ V K L P+ ST + D F + VK V+ A+YFSR I
Sbjct: 125 PLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATI 184
Query: 128 PYNKSGKVNPQFPYL-----LHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGY 182
PY++ G + P L HLG+ +Y + L+ Y L+ E LEQL+VLENG+
Sbjct: 185 PYDRDGAKRDE-PTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGH 243
Query: 183 KMKVIKVDHEAH---GVDAPEDVEK-----IESF 208
++ + EA+ GVD D+++ +ESF
Sbjct: 244 RIAIAVA--EANLPPGVDTQADLDRLNNMPVESF 275
>pdb|3JTJ|A Chain A, 3-Deoxy-Manno-Octulosonate Cytidylyltransferase From
Yersinia Pestis
Length = 253
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
++VATD + + + G +V +T ++GTER E ++ DI+VN+QGDEPL+
Sbjct: 48 VIVATDHPDVVKAVEAAGGEVCLTRADHQSGTERLAEVIEHYGFADDDIIVNVQGDEPLV 107
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P II V L A + AV E+AF+PN VK V D GYA+YFSR IP+ +
Sbjct: 108 PPVIIRQVADNLAACSAGXATLAVPIASSEEAFNPNAVKVVXDAQGYALYFSRATIPWER 167
Query: 132 SGKVNPQFP----YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKM 184
+ +L H+GI +Y + F++ Y P+ L+ E LEQL+VL G K+
Sbjct: 168 ERFAQSKETIGDCFLRHIGIYAYRAGFIRRYVNWAPSQLEQIELLEQLRVLWYGEKI 224
>pdb|2Y6P|A Chain A, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|B Chain B, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|C Chain C, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
Length = 234
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 112/199 (56%), Gaps = 11/199 (5%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
+++ATD E++ E + +V +T +G++R ++ L+ D+++N QGDEP +
Sbjct: 44 VILATDSERVKEVVEDL-CEVFLTPSDLPSGSDRVLYVVRDLD--VDLIINYQGDEPFVY 100
Query: 73 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFD-PNRVKCVVDNHGYAIYFSRGLIPYNK 131
E I + + L+ V + K ++A++ P VK V+D GYA+YFSR IPY +
Sbjct: 101 EEDIKLIFRELEKGERVV----TLARKDKEAYERPEDVKVVLDREGYALYFSRSPIPYFR 156
Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
N F L H+GI + L + + P+ L+ E LEQL++LENG K+KV+ ++
Sbjct: 157 K---NDTFYPLKHVGIYGFRKETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITEN 213
Query: 192 EAHGVDAPEDVEKIESFMR 210
HGVD ED++ +E ++
Sbjct: 214 YYHGVDTEEDLKIVEEKLK 232
>pdb|3TQD|A Chain A, Structure Of The 3-Deoxy-D-Manno-Octulosonate
Cytidylyltransferase (Kdsb) From Coxiella Burnetii
Length = 256
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 112/205 (54%), Gaps = 8/205 (3%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+V+ATDD++I + + FGA V TS ++GTER EA L + D I+V +QGDEPLI
Sbjct: 52 VVIATDDKRIRQVAEDFGAVVCXTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLI 111
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYN 130
P+ I + + L + ++ T + D F+P+ K V++ YA+YFS IP+
Sbjct: 112 PPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWG 171
Query: 131 K---SGKVNPQF--PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMK 185
+ S K N Q + H+GI +Y FL+ Y P + E LEQL++L +G ++
Sbjct: 172 RDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEKXEALEQLRILWHGGRIH 231
Query: 186 VIKVDHEA-HGVDAPEDVEKIESFM 209
+ + GVD ED+E++ ++
Sbjct: 232 XVVAKSKCPPGVDTEEDLERVRAYF 256
>pdb|1QWJ|A Chain A, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic
Acid Synthetase
pdb|1QWJ|B Chain B, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic
Acid Synthetase
pdb|1QWJ|C Chain C, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic
Acid Synthetase
pdb|1QWJ|D Chain D, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic
Acid Synthetase
Length = 229
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 9 LFCGLVVATDDEKIAECCQQFGADV-IMTSESCRNGTERCNEALQKL--EKKYDIVVNIQ 65
+F + V+TD ++I +QFGA V +SE+ ++ + + ++ L + DIV NIQ
Sbjct: 43 VFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQ 102
Query: 66 GDEPLIEPEIIDGVVKAL-QAAPDAVFST 93
P + P + V + + + D+VFS
Sbjct: 103 ATSPCLHPTDLQKVAEMIREEGYDSVFSV 131
>pdb|1AX3|A Chain A, Solution Nmr Structure Of B. Subtilis Iiaglc, 16
Structures
pdb|1GPR|A Chain A, Refined Crystal Structure Of Iia Domain Of The Glucose
Permease Of Bacillus Subtilis At 1.9 Angstroms
Resolution
Length = 162
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 20/104 (19%)
Query: 66 GDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRG 125
G+E + P I G + + PD VFS + G+AI S G
Sbjct: 11 GEEVFVSP--ITGEIHPITDVPDQVFSGKMM------------------GDGFAILPSEG 50
Query: 126 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLE 169
++ GK+ FP +G+QS + I+ G+ L+ E
Sbjct: 51 IVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,822,314
Number of Sequences: 62578
Number of extensions: 288610
Number of successful extensions: 940
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 20
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)