BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027992
(215 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C920|KDSB_ARATH 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial
OS=Arabidopsis thaliana GN=KDSB PE=1 SV=1
Length = 290
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/203 (88%), Positives = 189/203 (93%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
+VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEKKYD+VVNIQGDEPLIE
Sbjct: 88 IVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEKKYDVVVNIQGDEPLIE 147
Query: 73 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS 132
PEIIDGVVKALQ PDAVFSTAVTSLKPED DPNRVKCVVDN GYAIYFSRGLIPYNKS
Sbjct: 148 PEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNRGYAIYFSRGLIPYNKS 207
Query: 133 GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE 192
GKVNP FPY+LHLGIQS+DS FLK+Y L PTPLQ EEDLEQLKVLENGYKMKVIKVDHE
Sbjct: 208 GKVNPDFPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLKVLENGYKMKVIKVDHE 267
Query: 193 AHGVDAPEDVEKIESFMRERNLS 215
AHGVD P+DVEKIES MRERN+S
Sbjct: 268 AHGVDTPDDVEKIESLMRERNMS 290
>sp|Q6MD00|KDSB_PARUW 3-deoxy-manno-octulosonate cytidylyltransferase OS=Protochlamydia
amoebophila (strain UWE25) GN=kdsB PE=3 SV=1
Length = 259
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 125/204 (61%), Gaps = 3/204 (1%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKY--DIVVNIQGDEPL 70
L+VATDDE+I E + F V+MTSE C GT+R E L + +VNIQGDEP
Sbjct: 53 LIVATDDERIFEHVRSFNGKVVMTSEQCPTGTDRLAEVLSLYPEWMHATAIVNIQGDEPC 112
Query: 71 IEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 129
+ P I+ V+AL P ST VT L E+A + + VKCV+D G A+YFSR LIP
Sbjct: 113 LNPLTINLAVQALVNDPQGQVSTIVTPLLDEEEAKNSSIVKCVMDQQGNALYFSRALIPS 172
Query: 130 NKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV 189
NK+ Y HLG+ Y +F+ Y L TPLQLEEDLEQLKVLE+GY++KV V
Sbjct: 173 NKTNSFKNGAIYFRHLGLYVYRPSFIINYQKLPSTPLQLEEDLEQLKVLEHGYRIKVAIV 232
Query: 190 DHEAHGVDAPEDVEKIESFMRERN 213
D GVD PED+ K+E ++ ++N
Sbjct: 233 DQANIGVDTPEDIHKVEEWLCKQN 256
>sp|Q8RFA8|KDSB_FUSNN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=kdsB PE=3 SV=1
Length = 245
Score = 164 bits (415), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 126/204 (61%), Gaps = 5/204 (2%)
Query: 12 GLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLI 71
L+VATDDE+I FG IMTS++ NGT R E +K+ +YD ++NIQGDEPLI
Sbjct: 44 SLIVATDDERIYNEVINFGGQAIMTSKNHTNGTSRIAEVCEKM-TEYDTIINIQGDEPLI 102
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 130
E E+I+ +++ + D +T L E+ +PN VK V D + YAIYFSR +IPY
Sbjct: 103 EYEMINSLIETFKENKDLKMATLKHKLLNKEEIKNPNNVKVVCDKNDYAIYFSRSVIPYP 162
Query: 131 KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD 190
+ N Y H+GI Y +F+ Y + TPL+ E LEQL+VLENGYK+KV++
Sbjct: 163 RK---NGNISYFKHIGIYGYKRDFVIEYSKMLATPLEEIESLEQLRVLENGYKIKVLETT 219
Query: 191 HEAHGVDAPEDVEKIESFMRERNL 214
H GVD E++E++ ++++E N+
Sbjct: 220 HSLIGVDTQENLEQVINYIKENNI 243
>sp|A6L9D4|KDSB_PARD8 3-deoxy-manno-octulosonate cytidylyltransferase OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=kdsB PE=3 SV=1
Length = 251
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 15 VATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE 74
VATDD +I + FG V+MTS+ R+GT+RC EA QK+ + YD++VNIQGDEP I PE
Sbjct: 47 VATDDIRIENAVKAFGGQVVMTSDQHRSGTDRCYEAYQKIGEGYDVIVNIQGDEPFIHPE 106
Query: 75 IIDGVVKALQAAPDAVFSTAVTSLKPED-----AFDPNRVKCVVDNHGYAIYFSRGLIPY 129
I +K A + +T V + +D F+PN K V++ + A+YFSR +IPY
Sbjct: 107 QIQ-TIKTCFADANTQIATLVKPFRSDDDFESSLFNPNSPKVVLNKNNEAMYFSRSIIPY 165
Query: 130 NKSGKVNPQFP---YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 186
+ K P + H+G+ +Y + LK L + L+L E LEQL+ LENGYK+KV
Sbjct: 166 IRGKKYTEWLPSHTFYKHIGLYAYRAQVLKEITQLPQSALELAESLEQLRWLENGYKIKV 225
Query: 187 IKVDHEAHGVDAPEDVEKIESFMRER 212
+ E G+D PED+EK +F+ R
Sbjct: 226 GITEQETIGIDTPEDMEKALAFLANR 251
>sp|C5CKW0|KDSB_VARPS 3-deoxy-manno-octulosonate cytidylyltransferase OS=Variovorax
paradoxus (strain S110) GN=kdsB PE=3 SV=1
Length = 257
Score = 156 bits (395), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 123/206 (59%), Gaps = 12/206 (5%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
+VVA DD I E C + G + I+T + +G++R EA ++L DI+VN+QGDEPLI
Sbjct: 45 VVVAGDDAAIVEACARHGVEAILTRQDHPSGSDRLAEACEQLGLDGSDIIVNVQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF-DPNRVKCVVDNHGYAIYFSRGLIPYN 130
+P +ID V AL A P+A STA + D F +PN VK V+D G A+YFSR IP+
Sbjct: 105 DPALIDAVASALAAHPEAAMSTAAHEIDSLDDFLNPNVVKAVLDAQGNALYFSRAPIPWW 164
Query: 131 KSGKVNPQFPYLL-------HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
+ G N P +L H+GI Y + F++ +P L P P++ E LEQL+ L +G++
Sbjct: 165 RDGSANGAPPSVLPAPAPLRHIGIYGYRAGFVRSFPSLAPAPVEATEALEQLRALWHGHR 224
Query: 184 MKVIKVDHEA--HGVDAPEDVEKIES 207
+ V V H A GVD P D+E++ +
Sbjct: 225 IAV-HVSHVAPGPGVDTPADLERVRA 249
>sp|Q9PKL1|KDSB_CHLMU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=kdsB PE=3 SV=2
Length = 254
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 123/200 (61%), Gaps = 8/200 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
+VVATDD++I + +FG +MT ESC NGTER EA+ + + +IVVNIQGDEP +
Sbjct: 52 VVVATDDQRIFDHVVEFGGLCVMTCESCANGTERVEEAVSQHFPQAEIVVNIQGDEPCLS 111
Query: 73 PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P IIDG+V+ L+ P +T VT ++ P+ ++VKCV D G A+YFSR +IP N
Sbjct: 112 PSIIDGLVEMLEGNPAIDIATPVTETVDPDAILTNHKVKCVFDKTGRALYFSRSVIPNNF 171
Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
P LH+G+ ++ FL Y + P+ L L EDLEQL+VLE+G + V V
Sbjct: 172 KRST----PIYLHIGVYAFRRAFLSEYVKIPPSSLSLAEDLEQLRVLESGRSIYV-HVVQ 226
Query: 192 EAHG--VDAPEDVEKIESFM 209
A G VD PED+ K+E ++
Sbjct: 227 NATGPSVDYPEDISKVEQYL 246
>sp|B0BBG2|KDSB_CHLTB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis serovar L2b (strain UCH-1/proctitis) GN=kdsB
PE=3 SV=1
Length = 254
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 120/200 (60%), Gaps = 8/200 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
+VVATDD++I + +FG +MTS SC NGTER E + + + +IVVNIQGDEP +
Sbjct: 52 VVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLS 111
Query: 73 PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P +IDG+V L+ P A T VT + PE ++VKCV D +G A+YFSR IP+N
Sbjct: 112 PTVIDGLVSTLENNPAADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNF 171
Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
P LH+G+ ++ FL Y + P+ L L EDLEQL+VLE G + V V
Sbjct: 172 KHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYV-HVVQ 226
Query: 192 EAHG--VDAPEDVEKIESFM 209
A G VD PED+ K+E ++
Sbjct: 227 NATGPSVDYPEDITKVEQYL 246
>sp|B0B9T2|KDSB_CHLT2 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B)
GN=kdsB PE=3 SV=1
Length = 254
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 120/200 (60%), Gaps = 8/200 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
+VVATDD++I + +FG +MTS SC NGTER E + + + +IVVNIQGDEP +
Sbjct: 52 VVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLS 111
Query: 73 PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P +IDG+V L+ P A T VT + PE ++VKCV D +G A+YFSR IP+N
Sbjct: 112 PTVIDGLVSTLENNPAADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNF 171
Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
P LH+G+ ++ FL Y + P+ L L EDLEQL+VLE G + V V
Sbjct: 172 KHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYV-HVVQ 226
Query: 192 EAHG--VDAPEDVEKIESFM 209
A G VD PED+ K+E ++
Sbjct: 227 NATGPSVDYPEDITKVEQYL 246
>sp|P0CD75|KDSB_CHLTR 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=kdsB PE=3 SV=1
Length = 254
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 121/200 (60%), Gaps = 8/200 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
+VVATDD++I + +FG +MTS SC NGTER E + + + +IVVNIQGDEP +
Sbjct: 52 VVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLS 111
Query: 73 PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P +IDG+V L+ P A T+VT + PE ++VKCV D +G A+YFSR IP+N
Sbjct: 112 PTVIDGLVSTLENNPAADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNF 171
Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
P LH+G+ ++ FL Y + P+ L L EDLEQL+VLE G + V V
Sbjct: 172 KHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYV-HVVQ 226
Query: 192 EAHG--VDAPEDVEKIESFM 209
A G VD PED+ K+E ++
Sbjct: 227 NATGPSVDYPEDITKVEQYL 246
>sp|Q3KMI0|KDSB_CHLTA 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=kdsB PE=3 SV=1
Length = 254
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 121/200 (60%), Gaps = 8/200 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
+VVATDD++I + +FG +MTS SC NGTER E + + + +IVVNIQGDEP +
Sbjct: 52 VVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLS 111
Query: 73 PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P +IDG+V L+ P A T+VT + PE ++VKCV D +G A+YFSR IP+N
Sbjct: 112 PTVIDGLVSTLENNPAADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNF 171
Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
P LH+G+ ++ FL Y + P+ L L EDLEQL+VLE G + V V
Sbjct: 172 KHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYV-HVVQ 226
Query: 192 EAHG--VDAPEDVEKIESFM 209
A G VD PED+ K+E ++
Sbjct: 227 NATGPSVDYPEDITKVEQYL 246
>sp|Q01T78|KDSB_SOLUE 3-deoxy-manno-octulosonate cytidylyltransferase OS=Solibacter
usitatus (strain Ellin6076) GN=kdsB PE=3 SV=1
Length = 252
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 118/202 (58%), Gaps = 5/202 (2%)
Query: 10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEP 69
++ATDDE++ + FGA V MT +GT+R E + +I+VNIQGDEP
Sbjct: 45 LTSTIIATDDERVYTAAKSFGARVRMTRADHLSGTDRVAEVASA--ENAEIIVNIQGDEP 102
Query: 70 LIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIP 128
LI+P ID V L PD + T ++ P + DPN VK V D+ G AIYFSR IP
Sbjct: 103 LIDPAAIDAAVLPLVHEPDVLMGTLKKRIEDPREIVDPNVVKVVTDHAGDAIYFSRCPIP 162
Query: 129 YNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIK 188
+++ + PY H+G+ Y +FL Y L PL+ E LEQL+ LENGY+++V++
Sbjct: 163 FDRDRSADT--PYFKHVGLYVYQRDFLLSYSTLPVGPLERSERLEQLRALENGYRIRVVE 220
Query: 189 VDHEAHGVDAPEDVEKIESFMR 210
++E+ GVD PED+E++ +
Sbjct: 221 TEYESLGVDTPEDLERVSRLFK 242
>sp|A1BI64|KDSB_CHLPD 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlorobium
phaeobacteroides (strain DSM 266) GN=kdsB PE=3 SV=1
Length = 247
Score = 154 bits (389), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 127/203 (62%), Gaps = 11/203 (5%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
+VVATD+++IA Q +GA+V+MTS R GTER EA + +E DI VN+QGDEPLI
Sbjct: 46 VVVATDNDEIASVLQAYGAEVVMTSPHARCGTERIAEAAKSIEG--DIYVNLQGDEPLIS 103
Query: 73 PEIIDGVVKAL--QAAPDAVFSTAVTSLKPEDAF---DPNRVKCVVDNHGYAIYFSRGLI 127
PE ID ++ + PD ST V L PED D N VK V+DN GYA+YFSR I
Sbjct: 104 PENIDLALEPFFTETPPDC--STLVFPLLPEDFRQLEDINTVKVVMDNAGYALYFSRSPI 161
Query: 128 PYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVI 187
PY + +++ H+G+ ++ ++ L + L P+ L+L E LEQL++LENGY+++ +
Sbjct: 162 PYQR--QISTSTECYRHIGLYAFRADVLHAFASLAPSMLELAESLEQLRLLENGYRIRCV 219
Query: 188 KVDHEAHGVDAPEDVEKIESFMR 210
K +A GV+ ED+E + +R
Sbjct: 220 KTTRDAPGVNTYEDLELVRQLLR 242
>sp|A5G5T4|KDSB_GEOUR 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
uraniireducens (strain Rf4) GN=kdsB PE=3 SV=1
Length = 251
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 118/207 (57%), Gaps = 13/207 (6%)
Query: 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE 68
L ++VATDDE+IA FG MTS GT+R E +L+ DI+VN+QGDE
Sbjct: 42 LVSEVIVATDDERIAAAVHAFGGRAEMTSRVHETGTDRLAEVAARLDS--DIIVNVQGDE 99
Query: 69 PLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLI 127
PLIEP +ID +K L + T T +K D PN VK V D GYA+YFSR +
Sbjct: 100 PLIEPAMIDEAIKPLAEDSSVMMGTLKTRIKTLHDFLSPNVVKVVTDWEGYALYFSRSPL 159
Query: 128 PYNKSGKVN---------PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVL 178
P N K N + H+G+ Y +FL + + PT L++ E LEQL+VL
Sbjct: 160 P-NFRDKWNDLKDEAFASRKLLCYKHVGLYVYRRDFLLQFAQMSPTYLEMAEKLEQLRVL 218
Query: 179 ENGYKMKVIKVDHEAHGVDAPEDVEKI 205
ENGY++KV++ D+E+ GVD P D+EK+
Sbjct: 219 ENGYRIKVVETDYESIGVDTPGDLEKV 245
>sp|C6E0M8|KDSB_GEOSM 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp.
(strain M21) GN=kdsB PE=3 SV=1
Length = 252
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 125/217 (57%), Gaps = 11/217 (5%)
Query: 5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNI 64
+ L ++VATDDE+IA + FG V MTS + GT+R E K++ DIVVN+
Sbjct: 38 AKATLVSEVIVATDDERIAAAVRAFGGRVEMTSPTHETGTDRLAEVAAKIDA--DIVVNV 95
Query: 65 QGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFS 123
QGDEPLI+P +ID ++ L P +T +K D PN VK V D G +YFS
Sbjct: 96 QGDEPLIDPAMIDEAIRPLLDDPSIPMATLKCRIKTLHDFLSPNVVKVVSDPTGNVLYFS 155
Query: 124 RGLIPYNKS--------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQL 175
R +P+ + V+ + H+G+ Y FL ++ GL PT L+L E LEQL
Sbjct: 156 RSPLPFFRDKWNDLKDDAFVSGKLLCYKHVGLYVYRREFLPVFAGLKPTYLELAEKLEQL 215
Query: 176 KVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 212
+VLENGY++K+++ + E+ GVD P D++K+ +++R
Sbjct: 216 RVLENGYRIKIVETEFESIGVDTPADLDKVLERLKDR 252
>sp|Q7MTW6|KDSB_PORGI 3-deoxy-manno-octulosonate cytidylyltransferase OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=kdsB PE=3 SV=1
Length = 254
Score = 150 bits (380), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 123/210 (58%), Gaps = 12/210 (5%)
Query: 14 VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP 73
VVATDDE+I + + FG +V+MTS C +GTERC EA K+ + IV+N+QGDEP I+
Sbjct: 47 VVATDDERIRQAVEDFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQK 106
Query: 74 EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFD----PNRVKCVVDNHGYAIYFSRGLIPY 129
E ID ++ A P+ +T + +F+ PN K V+D+ GYA+YFSR +IPY
Sbjct: 107 EQIDLLISAFD-KPETDIATLAEVFSSDVSFERLNNPNSPKIVLDHGGYALYFSRSVIPY 165
Query: 130 NKSGKVNP-----QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKM 184
+ V P + Y H+GI ++ L+ L + + E LEQL+ LE GY++
Sbjct: 166 LRG--VQPDSWCRRHTYYKHIGIYAFRPTVLRKITSLPQSTAEQAESLEQLRWLEYGYRI 223
Query: 185 KVIKVDHEAHGVDAPEDVEKIESFMRERNL 214
+V++ G+D PED+EK +++R + +
Sbjct: 224 RVLQTQQSTIGIDTPEDMEKAIAYLRSQGM 253
>sp|B9M9Q4|KDSB_GEOSF 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp.
(strain FRC-32) GN=kdsB PE=3 SV=1
Length = 253
Score = 150 bits (379), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 120/215 (55%), Gaps = 13/215 (6%)
Query: 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE 68
L ++VATDDE+I + FG MTS S GT+R E +L+ DI+VN+QGDE
Sbjct: 42 LVSEVIVATDDERIVAAVRAFGGRAEMTSRSHETGTDRLAEVAARLDS--DIIVNVQGDE 99
Query: 69 PLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLI 127
PLI+P +ID + L + T T +K D PN VK V D GYA+YFSR +
Sbjct: 100 PLIDPAMIDEAISPLAEDSSLLMGTLKTRIKSLHDFLSPNVVKVVTDWEGYALYFSRSPL 159
Query: 128 PYNKSGKVN---------PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVL 178
P N K N + H+G+ Y FL + + PT L++ E LEQL+VL
Sbjct: 160 P-NFRDKWNDLKDEAFSSRKLLCFKHVGLYVYRREFLLQFAQMSPTYLEMAEKLEQLRVL 218
Query: 179 ENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN 213
ENGY++KV++ D E+ GVD P D++K+ +++R
Sbjct: 219 ENGYRIKVVETDFESIGVDTPGDLDKVLERLKDRG 253
>sp|B5ETK7|KDSB_VIBFM 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio fischeri
(strain MJ11) GN=kdsB PE=3 SV=1
Length = 249
Score = 150 bits (379), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 121/203 (59%), Gaps = 6/203 (2%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+++ATDD +I + FG DV MTS + +GTER E ++K D IVVN+QGDEPLI
Sbjct: 45 VIIATDDSRIEAVVKGFGGDVCMTSPNHESGTERLAEVIEKCGISADEIVVNVQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P II V + L + + + AVT + +D F+PN VK V D GYA+YFSR IP+++
Sbjct: 105 PPSIIQQVAQNLSDSVAPMATLAVTIDEEDDVFNPNAVKVVTDAEGYALYFSRASIPWDR 164
Query: 132 ----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV- 186
G+ P L H+GI +Y + F+ Y P+ L+ E LEQL+VL G K+ V
Sbjct: 165 DAFAQGETLTANPLLRHIGIYAYRAGFINTYINWQPSVLEKIECLEQLRVLWYGEKIHVA 224
Query: 187 IKVDHEAHGVDAPEDVEKIESFM 209
+ + A GVD PED+EK+ + +
Sbjct: 225 VAKEAPAAGVDTPEDLEKVRAIL 247
>sp|Q5E0E9|KDSB_VIBF1 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=kdsB PE=3 SV=1
Length = 249
Score = 150 bits (379), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 121/203 (59%), Gaps = 6/203 (2%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+++ATDD +I + FG DV MTS + +GTER E ++K D IVVN+QGDEPLI
Sbjct: 45 VIIATDDSRIEAVVKGFGGDVCMTSPNHESGTERLAEVIEKCGISADEIVVNVQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P II V + L + + + AVT + +D F+PN VK V D GYA+YFSR IP+++
Sbjct: 105 PPSIIQQVAQNLSDSVAPMATLAVTIDEEDDVFNPNAVKVVTDAEGYALYFSRASIPWDR 164
Query: 132 ----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV- 186
G+ P L H+GI +Y + F+ Y P+ L+ E LEQL+VL G K+ V
Sbjct: 165 DAFAQGETLTANPLLRHIGIYAYRAGFINTYINWQPSVLEKIECLEQLRVLWYGEKIHVA 224
Query: 187 IKVDHEAHGVDAPEDVEKIESFM 209
+ + A GVD PED+EK+ + +
Sbjct: 225 VAKEAPAAGVDTPEDLEKVRAIL 247
>sp|B2RLM4|KDSB_PORG3 3-deoxy-manno-octulosonate cytidylyltransferase OS=Porphyromonas
gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
GN=kdsB PE=3 SV=1
Length = 254
Score = 150 bits (378), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 123/210 (58%), Gaps = 12/210 (5%)
Query: 14 VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP 73
VVATDDE+I + + FG +V+MTS C +GTERC EA K+ + IV+N+QGDEP I+
Sbjct: 47 VVATDDERIRQAVEDFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQK 106
Query: 74 EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFD----PNRVKCVVDNHGYAIYFSRGLIPY 129
E ID ++ A P+ +T + +F+ PN K V+D+ GYA+YFSR +IPY
Sbjct: 107 EQIDLLISAFD-KPETDIATLAEVFSSDASFERLNNPNSPKIVLDHGGYALYFSRSVIPY 165
Query: 130 NKSGKVNP-----QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKM 184
+ V P + Y H+GI ++ L+ L + + E LEQL+ LE GY++
Sbjct: 166 LRG--VQPDSWCRRHTYYKHIGIYAFRPTVLRKITSLPQSTAEQAESLEQLRWLEYGYRI 223
Query: 185 KVIKVDHEAHGVDAPEDVEKIESFMRERNL 214
+V++ G+D PED++K +++R + +
Sbjct: 224 RVLQTQQSTIGIDTPEDMDKAIAYLRSQGM 253
>sp|Q72UN2|KDSB_LEPIC 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni (strain Fiocruz L1-130) GN=kdsB PE=3 SV=1
Length = 248
Score = 150 bits (378), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 117/213 (54%), Gaps = 7/213 (3%)
Query: 5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNI 64
S + LVVATDD +I E Q+FG +MTS +GT+R E + + Y I+VNI
Sbjct: 40 SRSSVLSELVVATDDVRIHEVVQKFGGRSVMTSSDHPSGTDRIIEVANQFSE-YSIIVNI 98
Query: 65 QGDEPLIEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFS 123
QGDEP IEPE+IDGV + P+ ST AV L A D NRVK ++D +G AIYFS
Sbjct: 99 QGDEPGIEPELIDGVASLKASHPEWAMSTAAVPLLDFSHAIDFNRVKVIIDRNGKAIYFS 158
Query: 124 RGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
R LIP + P HLGI YD +FL Y L + L+ E LEQL+ +E GY
Sbjct: 159 RSLIP----SQFKTTVPLYRHLGIYGYDRDFLLQYNSLPKSNLEESESLEQLRAIEAGYG 214
Query: 184 MKVIKVDHEAHGVDAPEDVE-KIESFMRERNLS 215
+ + VD P D+E IE F + + +S
Sbjct: 215 IGIYLSKEAGLSVDTPADLEIVIEDFKKRKWIS 247
>sp|Q8F0C3|KDSB_LEPIN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=kdsB PE=3 SV=2
Length = 247
Score = 150 bits (378), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 117/213 (54%), Gaps = 7/213 (3%)
Query: 5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNI 64
S + LVVATDD +I E Q+FG +MTS +GT+R E + + Y I+VNI
Sbjct: 39 SRSSVLSELVVATDDVRIHEVVQKFGGRSVMTSSDHPSGTDRIIEVANQFSE-YSIIVNI 97
Query: 65 QGDEPLIEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFS 123
QGDEP IEPE+IDGV + P+ ST AV L A D NRVK ++D +G AIYFS
Sbjct: 98 QGDEPGIEPELIDGVASLKASHPEWAMSTAAVPLLDFSHAIDFNRVKVIIDRNGKAIYFS 157
Query: 124 RGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
R LIP + P HLGI YD +FL Y L + L+ E LEQL+ +E GY
Sbjct: 158 RSLIP----SQFKTTVPLYRHLGIYGYDRDFLLQYNSLPKSNLEESESLEQLRAIEAGYG 213
Query: 184 MKVIKVDHEAHGVDAPEDVE-KIESFMRERNLS 215
+ + VD P D+E IE F + + +S
Sbjct: 214 IGIYLSKEAGLSVDTPADLEIVIEDFKKRKWIS 246
>sp|Q5P107|KDSB_AROAE 3-deoxy-manno-octulosonate cytidylyltransferase OS=Aromatoleum
aromaticum (strain EbN1) GN=kdsB PE=3 SV=1
Length = 258
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 120/206 (58%), Gaps = 9/206 (4%)
Query: 11 CGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEP 69
+ VATD ++ + + G D +MT E +GT+R E + L K D IVVN+QGDEP
Sbjct: 44 ASVWVATDHPEVLDAVRAAGGDALMTREDHPSGTDRLAEVVDALGWKADDIVVNVQGDEP 103
Query: 70 LIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIP 128
LIEP++I V +AL P A +TA L + F+PN VK V D H +A+YFSR IP
Sbjct: 104 LIEPKLIAAVAQALADDPVAAIATAAHPLHAAAELFNPNVVKVVCDAHDHALYFSRAPIP 163
Query: 129 YNKSGKVNPQ------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGY 182
+ + + P L H+G+ +Y FL+ Y L P+PL+ E LEQL+ L +G+
Sbjct: 164 WARDAFATARDDIPAGLPVLRHVGLYAYRVAFLRCYASLAPSPLEQWEALEQLRALWHGH 223
Query: 183 KMKVIKVD-HEAHGVDAPEDVEKIES 207
+++V+ V A GVD PED+E++ +
Sbjct: 224 RIRVMTVAVAPAAGVDTPEDLERVRA 249
>sp|Q39W63|KDSB_GEOMG 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=kdsB PE=3 SV=1
Length = 254
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 11/206 (5%)
Query: 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE 68
L ++VATDDE++AE + FG V MTS + GT+R E +++ DI+VN+QGDE
Sbjct: 42 LVSEVIVATDDERVAEAVRAFGGRVEMTSATHETGTDRLAEVAARIDA--DIIVNVQGDE 99
Query: 69 PLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLI 127
PLIEP +ID + L A T + +K D PN VK V D G A+YFSR +
Sbjct: 100 PLIEPAMIDEAIAPLVADASIRMGTLKSRIKSLHDFLSPNVVKVVTDREGDALYFSRSPL 159
Query: 128 P-----YNK---SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLE 179
P +N V + H+G+ Y +FL + + PTPL+L E LEQL+VLE
Sbjct: 160 PNFRDKWNDLKDEAFVTGRLLCYKHVGLYVYRRDFLLAFARMAPTPLELAEKLEQLRVLE 219
Query: 180 NGYKMKVIKVDHEAHGVDAPEDVEKI 205
NG++++V++ E+ GVD P D++K+
Sbjct: 220 NGFRIRVVETSFESIGVDTPSDLDKV 245
>sp|Q9Z8U9|KDSB_CHLPN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
pneumoniae GN=kdsB PE=3 SV=1
Length = 254
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 120/205 (58%), Gaps = 5/205 (2%)
Query: 6 HSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ 65
S L +VVATDD+ I + FG +MTS +C NGTER E +K K +I+VNIQ
Sbjct: 46 QSSLLDKIVVATDDQHIIDHVTDFGGYAVMTSPTCSNGTERTGEVARKYFPKAEIIVNIQ 105
Query: 66 GDEPLIEPEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSR 124
GDEP + E++D +V+ L+++P+A T V + E+ +VKCV D+ G A+YFSR
Sbjct: 106 GDEPCLNSEVVDALVQKLRSSPEAELVTPVALTTDREEILTEKKVKCVFDSEGRALYFSR 165
Query: 125 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKM 184
IP+ + P LH+G+ ++ L Y TPL EDLEQL+ LE+G K+
Sbjct: 166 SPIPF----ILKKATPVYLHIGVYAFKREALFRYLQHSSTPLSDAEDLEQLRFLEHGGKI 221
Query: 185 KVIKVDHEAHGVDAPEDVEKIESFM 209
V VD ++ VD PED+ K+E ++
Sbjct: 222 HVCIVDAKSPSVDYPEDIAKVEQYI 246
>sp|B5E8N2|KDSB_GEOBB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
GN=kdsB PE=3 SV=2
Length = 255
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 121/210 (57%), Gaps = 11/210 (5%)
Query: 5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNI 64
+ L ++VATDDE+IA + FG V MTS + GT+R E +++ DI+VN+
Sbjct: 42 AKATLVSEVIVATDDERIAAAVRAFGGRVEMTSPTHETGTDRLAEVAARIDA--DIIVNV 99
Query: 65 QGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFS 123
QGDEPLI+P +ID ++ L P +T +K D PN VK V D G +YFS
Sbjct: 100 QGDEPLIDPAMIDEAIRPLLDDPSIPMATLKCRIKTLHDFLSPNVVKVVSDPTGNVLYFS 159
Query: 124 RGLIPYNKS--------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQL 175
R +P+ + V+ + H+G+ Y FL ++ GL PT L+L E LEQL
Sbjct: 160 RSPLPFFRDKWNDLKDDAFVSGKLLCYKHVGLYVYRREFLPVFAGLQPTYLELAEKLEQL 219
Query: 176 KVLENGYKMKVIKVDHEAHGVDAPEDVEKI 205
+VLENGY++K+++ + E+ GVD P D++K+
Sbjct: 220 RVLENGYRIKIVETEFESIGVDTPADLDKV 249
>sp|B8FKL0|KDSB_DESAA 3-deoxy-manno-octulosonate cytidylyltransferase
OS=Desulfatibacillum alkenivorans (strain AK-01) GN=kdsB
PE=3 SV=1
Length = 245
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 121/204 (59%), Gaps = 4/204 (1%)
Query: 11 CGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEP 69
G+ VATDDE+I ++FG +MTS++CR+GT+R EA + L DIVVN+QGD+P
Sbjct: 44 TGVAVATDDERIVSAVEKFGGKAVMTSDACRSGTDRVFEAGRTLGLTGSDIVVNVQGDQP 103
Query: 70 LIEPEIIDGVVKALQAAPDAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIP 128
+ +PE ID V L P +T A + + DP VK V D G+A+YFSR IP
Sbjct: 104 VFDPECIDEVTAPLIGDPGTGMTTLAFAIVNEREMTDPKDVKMVFDQDGWALYFSRATIP 163
Query: 129 YNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIK 188
+++ G N +F HLG+ +Y +FL + L L+ E LEQL+ LE G +K +
Sbjct: 164 HDRDG--NMEFDTYKHLGVYAYTMDFLAEFCSLPEGHLEKIEKLEQLRALEYGLGIKTVV 221
Query: 189 VDHEAHGVDAPEDVEKIESFMRER 212
+++ VD PED+ +IE+ ++++
Sbjct: 222 TAYDSPEVDLPEDIARIEALLKDQ 245
>sp|A8ZWH0|KDSB_DESOH 3-deoxy-manno-octulosonate cytidylyltransferase OS=Desulfococcus
oleovorans (strain DSM 6200 / Hxd3) GN=kdsB PE=3 SV=1
Length = 248
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 121/199 (60%), Gaps = 4/199 (2%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
+ VATDD +I E +FG + +MTS +CR+GT+R EA +++ DIVVNIQGD+PLI
Sbjct: 46 IAVATDDRRIVEAVTRFGGNALMTSAACRSGTDRAAEAAKQMGLAPEDIVVNIQGDQPLI 105
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 130
P+ ID + L + PD +TA + + ++ +P VK V D G+A+YFSR IP+
Sbjct: 106 APQTIDETLAPLLSDPDLGMTTAAFAIMDKQEITNPKDVKMVFDADGFALYFSRSPIPFA 165
Query: 131 KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD 190
+ + +F HLGI +Y FL I+ L L+ E LEQL+ LE+ +++K +
Sbjct: 166 RDK--DTRFDTFKHLGIYAYTRRFLDIFTQLPNGVLEEIEKLEQLRALEHSHRIKTVVTR 223
Query: 191 HEAHGVDAPEDVEKIESFM 209
+++ VD PED+ +IE+ M
Sbjct: 224 YDSPEVDIPEDIPRIEAMM 242
>sp|Q3A370|KDSB_PELCD 3-deoxy-manno-octulosonate cytidylyltransferase OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=kdsB PE=3
SV=1
Length = 250
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 120/205 (58%), Gaps = 9/205 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
+VVATDD +IA+ FG +V MT GT+R E +++ + ++VN+QGDEPLI+
Sbjct: 46 VVVATDDSRIADVVSGFGGEVQMTRADHATGTDRLAEVTARIDTQ--LIVNVQGDEPLID 103
Query: 73 PEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P +I+ V L P T T L ++ DPN VK V D G+A+YFSR IP+ +
Sbjct: 104 PHMIEAAVAPLSEDPAIPMGTLKTPLLNWQEYRDPNVVKVVTDRRGFALYFSRAPIPHPR 163
Query: 132 S-----GKVNPQFPYLL-HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMK 185
V+P L H+G+ Y +FL + GL +PL+ E LEQL+ LENGY ++
Sbjct: 164 ELAVDDSAVSPASMGLFRHIGLYVYRKDFLLTFAGLPESPLERLEKLEQLRALENGYAIR 223
Query: 186 VIKVDHEAHGVDAPEDVEKIESFMR 210
V++ D + GVD PED+ ++E+ +R
Sbjct: 224 VVETDRVSLGVDTPEDLVRVEAHLR 248
>sp|Q87R14|KDSB_VIBPA 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=kdsB PE=3 SV=1
Length = 251
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 125/210 (59%), Gaps = 14/210 (6%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+++ATDDE+++ +QFG V MTS + +GTER E ++K+ D I+VN+QGDEPL+
Sbjct: 45 VIIATDDERVSAAVEQFGGKVCMTSPNHESGTERLAEVVEKMAIPADHIIVNVQGDEPLV 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIYFSRGLIPYN 130
P II V L AA DA +T ++ ED F+PN VK V D GYA+YFSR IP++
Sbjct: 105 PPVIIRQVADNL-AASDAPMATLAVEIESEDEVFNPNAVKVVADERGYAMYFSRATIPWD 163
Query: 131 K-------SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
+ VN P + H+GI +Y + F+ Y P+ L+ E LEQL+VL G K
Sbjct: 164 RDNFAKQDKAIVN---PLMRHIGIYAYRAGFINTYVNWAPSALEQIECLEQLRVLWYGEK 220
Query: 184 MKV-IKVDHEAHGVDAPEDVEKIESFMRER 212
+ V + + A GVD PED+E + + + ++
Sbjct: 221 IHVAVAKEAPAAGVDTPEDLEAVRAIVAKK 250
>sp|A7MV12|KDSB_VIBHB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=kdsB PE=3 SV=1
Length = 252
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 122/206 (59%), Gaps = 6/206 (2%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+++ATDD++++ +QFG V MTS + +GTER E ++K+ D IVVN+QGDEPLI
Sbjct: 45 VIIATDDKRVSAAAEQFGGKVCMTSPNHESGTERLAEVVEKMAIPADHIVVNVQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P II V L + + AV E+ F+PN VK V D GYA+YFSR IP+++
Sbjct: 105 PPSIIRQVADNLAGCDAPMATLAVEIESEEEVFNPNAVKVVADERGYAMYFSRATIPWDR 164
Query: 132 S--GKVNPQF--PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV- 186
K + P +LH+GI +Y + F+ Y P+ L+ E LEQL+VL G K+ V
Sbjct: 165 DNFAKQDKTIANPLMLHIGIYAYRAGFINTYVNWQPSALEQIECLEQLRVLWYGEKIHVE 224
Query: 187 IKVDHEAHGVDAPEDVEKIESFMRER 212
+ + A GVD PED+E + + + ++
Sbjct: 225 VAKEAPAAGVDTPEDLESVRAIVAKQ 250
>sp|Q04XW6|KDSB_LEPBL 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550)
GN=kdsB PE=3 SV=1
Length = 246
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 115/213 (53%), Gaps = 7/213 (3%)
Query: 5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNI 64
S LVVATDD +I E Q FG + +MT +GT+R E + L +Y I++NI
Sbjct: 39 SRSTALSELVVATDDTRIHEVVQGFGGNSVMTRADHISGTDRIIE-VANLFSEYSIIINI 97
Query: 65 QGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFS 123
QGDEP IEPE+IDGV + P+ STA L DPNRVK ++D +G AIYFS
Sbjct: 98 QGDEPGIEPELIDGVAGLKASHPEWKMSTAAVPLIDFSHGEDPNRVKVIIDRNGKAIYFS 157
Query: 124 RGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
R LIP + P HLGI YD +FL Y L + L+ E LEQL+ +E GY
Sbjct: 158 RSLIP----SQFKQTVPLYRHLGIYGYDRDFLLKYNSLPKSNLEESESLEQLRAIEAGYG 213
Query: 184 MKVIKVDHEAHGVDAPEDVE-KIESFMRERNLS 215
+ V VD P D+E IE F + + ++
Sbjct: 214 IGVYLAQEAGLSVDTPADLEVVIEDFKKRKWIT 246
>sp|Q04VK9|KDSB_LEPBJ 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=kdsB PE=3 SV=1
Length = 246
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 115/213 (53%), Gaps = 7/213 (3%)
Query: 5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNI 64
S LVVATDD +I E Q FG + +MT +GT+R E + L +Y I++NI
Sbjct: 39 SRSTALSELVVATDDTRIHEVVQGFGGNSVMTRADHISGTDRIIE-VANLFSEYSIIINI 97
Query: 65 QGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFS 123
QGDEP IEPE+IDGV + P+ STA L DPNRVK ++D +G AIYFS
Sbjct: 98 QGDEPGIEPELIDGVAGLKASHPEWKMSTAAVPLIDFSHGEDPNRVKVIIDRNGKAIYFS 157
Query: 124 RGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
R LIP + P HLGI YD +FL Y L + L+ E LEQL+ +E GY
Sbjct: 158 RSLIP----SQFKQTVPLYRHLGIYGYDRDFLLKYNSLPKSNLEESESLEQLRAIEAGYG 213
Query: 184 MKVIKVDHEAHGVDAPEDVE-KIESFMRERNLS 215
+ V VD P D+E IE F + + ++
Sbjct: 214 IGVYLAQEAGLSVDTPADLEVVIEDFKKRKWIT 246
>sp|Q8DAU9|KDSB_VIBVU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio
vulnificus (strain CMCP6) GN=kdsB PE=3 SV=1
Length = 251
Score = 147 bits (370), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 123/209 (58%), Gaps = 10/209 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+++ATDD+++A+ FG V MTS + +GTER E +Q + D IVVN+QGDEPLI
Sbjct: 45 VIIATDDQRVADAVAVFGGKVCMTSPNHESGTERLAEVVQLMGIADDHIVVNVQGDEPLI 104
Query: 72 EPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 129
P II V + L A AP A A+TS E+ F+PN VK V D GYA+YFSR IP+
Sbjct: 105 PPSIIRQVAENLAASSAPMATLGVAITS--EEEVFNPNAVKVVTDKEGYALYFSRATIPW 162
Query: 130 NK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMK 185
++ G+V + + H+GI +Y + F+ Y P+ L+ E LEQL+VL G K+
Sbjct: 163 DRDAFARGEVLTEHSLMRHIGIYAYRAGFINTYVNWQPSSLEKIECLEQLRVLWYGEKIH 222
Query: 186 V-IKVDHEAHGVDAPEDVEKIESFMRERN 213
V + + GVD PED+E + + ++
Sbjct: 223 VELAKEAPPAGVDTPEDLELVRELIAAKS 251
>sp|Q7MJ10|KDSB_VIBVY 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio
vulnificus (strain YJ016) GN=kdsB PE=3 SV=1
Length = 251
Score = 146 bits (369), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 123/209 (58%), Gaps = 10/209 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+++ATDD+++A+ FG V MTS + +GTER E +Q + D IVVN+QGDEPLI
Sbjct: 45 VIIATDDQRVADAVAVFGGKVCMTSPNHESGTERLAEVVQLMGIADDHIVVNVQGDEPLI 104
Query: 72 EPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 129
P II V + L A AP A A+TS E+ F+PN VK V D GYA+YFSR IP+
Sbjct: 105 PPSIIRQVAENLAASSAPMATLGVAITS--EEEVFNPNAVKVVTDKEGYALYFSRATIPW 162
Query: 130 NK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMK 185
++ G+V + + H+GI +Y + F+ Y P+ L+ E LEQL+VL G K+
Sbjct: 163 DRDAFARGEVLTEHSLMRHIGIYAYRAGFINTYVNWQPSSLEKIECLEQLRVLWYGEKIH 222
Query: 186 V-IKVDHEAHGVDAPEDVEKIESFMRERN 213
V + + GVD PED+E + + ++
Sbjct: 223 VELAKEAPPAGVDTPEDLELVRKIIAAKS 251
>sp|Q7NSS6|KDSB_CHRVO 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=kdsB PE=3 SV=1
Length = 251
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 114/206 (55%), Gaps = 10/206 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+VVATD I C G + ++T E +GT+R E KL D +VVN+QGDEPLI
Sbjct: 46 VVVATDHADILAACAAHGVEAVLTREDHASGTDRLAEVAAKLALPDDALVVNVQGDEPLI 105
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 130
+PE+I+ + + L A DA +T +L D F+PN VK +D HG A+YFSR IPY
Sbjct: 106 QPELINRLAELLAGA-DAPVATLAHALHDAADHFNPNVVKVALDKHGRALYFSRAPIPYA 164
Query: 131 KSG------KVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKM 184
+ + P H+G+ Y + FL Y GL P PL+ E LEQL+VL +GY +
Sbjct: 165 RDAYAADRSALPAGLPVYRHIGMYGYRAGFLAAYAGLEPGPLEQYEALEQLRVLWHGYGI 224
Query: 185 KVIKVDHE-AHGVDAPEDVEKIESFM 209
V D A GVD PED+E++
Sbjct: 225 AVALADEAPAAGVDTPEDLERVRRLF 250
>sp|P57883|KDSB_PASMU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Pasteurella
multocida (strain Pm70) GN=kdsB PE=3 SV=1
Length = 258
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 124/211 (58%), Gaps = 14/211 (6%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
++VATD E++A + FGA+V MTSE+ ++GTER E ++KL D I+VNIQGDEPLI
Sbjct: 46 VIVATDHEQVATVARGFGAEVCMTSETHQSGTERLAEVVEKLGIAEDEIIVNIQGDEPLI 105
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P I+ V + L + S AV PE+ F+PN VK + D+ GY +YFSR IP+++
Sbjct: 106 PPAIVRQVAENLAKYQVKMASLAVNITDPEELFNPNAVKVLTDHAGYVLYFSRAPIPWHR 165
Query: 132 ------------SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLE 179
G++ YL H+GI +Y + F+K Y P+ L+ E LEQL+VL
Sbjct: 166 DQFASLPKEKSTRGQLVLSDHYLRHIGIYAYRAGFIKQYIQWQPSVLEQIESLEQLRVLW 225
Query: 180 NGYKMKV-IKVDHEAHGVDAPEDVEKIESFM 209
G K+ V + + GVD ED+EK+ S +
Sbjct: 226 YGEKIHVELAREVPPVGVDTAEDLEKVRSIL 256
>sp|C3LNH9|KDSB_VIBCM 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=kdsB PE=3 SV=1
Length = 252
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 121/207 (58%), Gaps = 8/207 (3%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+++ATDDE++ + Q FG V MTS + ++GTER E + K+ D IVVN+QGDEPLI
Sbjct: 45 VIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN- 130
P II V L A + + AV + F+PN VK + D GYA+YFSR IP++
Sbjct: 105 PPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDR 164
Query: 131 ----KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 186
K+ K Q P L H+GI +Y + F+ Y P+ L+ E LEQL+VL +G K+ V
Sbjct: 165 DNFAKADKAIVQ-PLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHV 223
Query: 187 -IKVDHEAHGVDAPEDVEKIESFMRER 212
+ ++ GVD PED+E + + ER
Sbjct: 224 AVALEAPPAGVDTPEDLEVVRRIVAER 250
>sp|Q9KQX2|KDSB_VIBCH 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=kdsB PE=1 SV=1
Length = 252
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 121/207 (58%), Gaps = 8/207 (3%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+++ATDDE++ + Q FG V MTS + ++GTER E + K+ D IVVN+QGDEPLI
Sbjct: 45 VIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN- 130
P II V L A + + AV + F+PN VK + D GYA+YFSR IP++
Sbjct: 105 PPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDR 164
Query: 131 ----KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 186
K+ K Q P L H+GI +Y + F+ Y P+ L+ E LEQL+VL +G K+ V
Sbjct: 165 DNFAKADKAIVQ-PLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHV 223
Query: 187 -IKVDHEAHGVDAPEDVEKIESFMRER 212
+ ++ GVD PED+E + + ER
Sbjct: 224 AVALEAPPAGVDTPEDLEVVRRIVAER 250
>sp|A5F726|KDSB_VIBC3 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=kdsB PE=3 SV=1
Length = 252
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 121/207 (58%), Gaps = 8/207 (3%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+++ATDDE++ + Q FG V MTS + ++GTER E + K+ D IVVN+QGDEPLI
Sbjct: 45 VIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN- 130
P II V L A + + AV + F+PN VK + D GYA+YFSR IP++
Sbjct: 105 PPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDR 164
Query: 131 ----KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 186
K+ K Q P L H+GI +Y + F+ Y P+ L+ E LEQL+VL +G K+ V
Sbjct: 165 DNFAKADKAIVQ-PLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHV 223
Query: 187 -IKVDHEAHGVDAPEDVEKIESFMRER 212
+ ++ GVD PED+E + + ER
Sbjct: 224 AVALEAPPAGVDTPEDLEVVRRIVAER 250
>sp|B6ES02|KDSB_ALISL 3-deoxy-manno-octulosonate cytidylyltransferase OS=Aliivibrio
salmonicida (strain LFI1238) GN=kdsB PE=3 SV=1
Length = 249
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 119/203 (58%), Gaps = 6/203 (2%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
+++ATDD +I + FG DV MTS + +GTER E + K +IVVN+QGDEPLI
Sbjct: 45 VIIATDDSRIEAVVKGFGGDVCMTSPNHESGTERLAEVIDKCGIASNEIVVNVQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P II V K L + + + AVT + ED F+PN VK V D GYA+YFSR IP+++
Sbjct: 105 PPSIIRQVAKNLADSIAPMATLAVTIDEEEDVFNPNAVKVVTDAEGYALYFSRAAIPWDR 164
Query: 132 ----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV- 186
G+ P L H+GI +Y + F+ Y P+ L+ E LEQL+VL G K+ V
Sbjct: 165 DAFAKGEALTANPLLRHIGIYAYRAGFINTYINWQPSVLEKIECLEQLRVLWYGEKIHVA 224
Query: 187 IKVDHEAHGVDAPEDVEKIESFM 209
+ + A GVD ED++K+ + +
Sbjct: 225 VAKEAPAAGVDTQEDLDKVRAIL 247
>sp|B0U168|KDSB_FRAP2 3-deoxy-manno-octulosonate cytidylyltransferase OS=Francisella
philomiragia subsp. philomiragia (strain ATCC 25017)
GN=kdsB PE=3 SV=1
Length = 250
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 121/209 (57%), Gaps = 12/209 (5%)
Query: 10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDE 68
F +++ATD ++I E + FGA VI+T + +GT+R EA+ KL DIVVN+QGDE
Sbjct: 43 FKSIIIATDSQEIKEVAENFGAKVILTRDDHESGTDRIAEAVTKLGFADEDIVVNVQGDE 102
Query: 69 PLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLI 127
PLI E I+ + L P+AV ST + + ED ++PN VK V D + YA+YFSR I
Sbjct: 103 PLIPVENIEQAAQLLIEKPEAVVSTLCERITEAEDIYNPNNVKVVFDKNNYALYFSRASI 162
Query: 128 PYNKSGKVNPQFP---YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKM 184
P+ + N Q + H+GI +Y FLK Y L +P++ E LEQL+VL NGYK
Sbjct: 163 PFERGFSENHQVSISEFFRHIGIYTYRVGFLKHYAELAISPIEKYEALEQLRVLYNGYK- 221
Query: 185 KVIKVDHEAH----GVDAPEDVEKIESFM 209
I ++ A GVD +D+EK+
Sbjct: 222 --IAIEQSAKPTPAGVDTLQDLEKVRKLF 248
>sp|B5YGT5|KDSB_THEYD 3-deoxy-manno-octulosonate cytidylyltransferase
OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=kdsB PE=3 SV=1
Length = 255
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 124/204 (60%), Gaps = 11/204 (5%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL-EKKYD-----IVVNIQG 66
+ VATDD +I + FG IMTS +GT+R EA+ KL ++ Y+ IV+N+QG
Sbjct: 46 VFVATDDSRILHTVESFGGKAIMTSSKHPSGTDRIAEAVDKLLQEGYNLQESSIVINLQG 105
Query: 67 DEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGL 126
DEPLI+ E+ID ++ ++ D++ + A K +D F+PN VK V D +GYA+YFSR
Sbjct: 106 DEPLIKKEMIDQLIDLMKNENDSIGTLAKRIEKEDDFFNPNIVKVVFDKNGYALYFSRSP 165
Query: 127 IPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGY 182
IP+++ G F Y H+GI Y+ LK + GL + L+ E LEQL+ LENG
Sbjct: 166 IPFDREKFIKGFSKNNFMY-KHIGIYGYNVRILKNFVGLPMSRLEEIESLEQLRALENGI 224
Query: 183 KMKVIKVDHEAHGVDAPEDVEKIE 206
K+KV ++++ G+D PED+E E
Sbjct: 225 KIKVGLTEYDSFGIDTPEDLEVAE 248
>sp|B0KF43|KDSB_PSEPG 3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas
putida (strain GB-1) GN=kdsB PE=3 SV=1
Length = 254
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 119/206 (57%), Gaps = 9/206 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+V+ATDD I E CQ FGA+V+MT +GT+R E + L D IVVN+QGDEPLI
Sbjct: 47 VVIATDDASILEACQAFGAEVLMTRADHESGTDRLAEVVAHLGLPADAIVVNVQGDEPLI 106
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 130
P IID V L A P+A +T + +PE F+PN VK V D +G A+ FSR +P+
Sbjct: 107 PPVIIDQVAANLAAHPEAGIATLAEPIHEPETVFNPNAVKVVSDKNGLALTFSRAPLPWA 166
Query: 131 KSG-----KVNPQ-FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKM 184
+ V P+ PY H+G+ +Y FL+ + P L+ E LEQL+ L +G ++
Sbjct: 167 RDAFAKDRNVLPEGVPYRRHIGMYAYRVGFLQDFVSWGPCWLEQTEALEQLRALWHGVRI 226
Query: 185 KV-IKVDHEAHGVDAPEDVEKIESFM 209
V ++ A GVD PED+E++ +
Sbjct: 227 HVEDAIEAPAVGVDTPEDLERVRRLL 252
>sp|Q254V8|KDSB_CHLFF 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila
felis (strain Fe/C-56) GN=kdsB PE=3 SV=1
Length = 254
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 120/198 (60%), Gaps = 5/198 (2%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
+VVATD+++I + FG D +MTS C NGTER EA+ + + +I+VNIQGDEP ++
Sbjct: 53 VVVATDNQRIMDHVLDFGGDCVMTSPECANGTERTAEAISRYFPEAEIIVNIQGDEPCLQ 112
Query: 73 PEIIDGVVKALQAAPD-AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
++D +V+ L+ +P+ V + A + + +VKCV D +G A+YFSR IP+
Sbjct: 113 HTVVDTLVRKLEESPEIQVVTPAAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPH-- 170
Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
+ + P LH+G+ ++ N L Y PT L EDLEQL++LE+G + + V+
Sbjct: 171 --ILKKETPIYLHIGVYAFRRNALFSYIESTPTSLSQAEDLEQLRILEHGGSIHICVVEA 228
Query: 192 EAHGVDAPEDVEKIESFM 209
++ VD PED+ K+E ++
Sbjct: 229 KSPSVDYPEDINKVEKYL 246
>sp|A1WWF7|KDSB_HALHL 3-deoxy-manno-octulosonate cytidylyltransferase OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=kdsB PE=3 SV=1
Length = 257
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLI 71
+VVATDD +I C+ FGA+V++T+ GT+R E + +L + IVVN+QGDEPL+
Sbjct: 48 VVVATDDARIESACRDFGAEVLLTAPDHPTGTDRIAEVVDRLALVDEAIVVNLQGDEPLM 107
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYN 130
PE++ V + L PDA +T T + D F+P+ VK V D+ +A+YFSR +P++
Sbjct: 108 PPELVALVAERLDTDPDAAIATLATPVTAADELFEPSVVKVVRDHRDHALYFSRAPVPWD 167
Query: 131 KS-------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
+ G V +L HLG+ +Y + FL+ +PGL P P + E LEQL+ L +G+
Sbjct: 168 RDRFDGIDDGAVAAGG-WLRHLGLYAYRAAFLRRFPGLEPAPPERLESLEQLRALWHGFA 226
Query: 184 MKVIKVDHE-AHGVDAPEDVEKI 205
++V D GVD P D+E +
Sbjct: 227 IQVAATDQRPGPGVDTPADLEAV 249
>sp|Q4QPI6|KDSB_HAEI8 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain 86-028NP) GN=kdsB PE=3 SV=1
Length = 254
Score = 144 bits (363), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 123/207 (59%), Gaps = 10/207 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
+++ATD+E +A+ + FGA+V MTS + +GTER E ++KL +I+VNIQGDEPLI
Sbjct: 45 VIIATDNENVADVAKNFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P I+ V L + S AV E+ F+PN VK + D GY +YFSR +IPY++
Sbjct: 105 PPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
Query: 132 SGKVNPQ--------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
+N Q YL H+GI +Y + F+K Y PT L+ E LEQL+VL NG +
Sbjct: 165 DQFMNLQDVQKVQLADAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGER 224
Query: 184 MKV-IKVDHEAHGVDAPEDVEKIESFM 209
+ V + + A GVD ED+EK+ + +
Sbjct: 225 IHVELAKEVPAVGVDTAEDLEKVRAIL 251
>sp|B3EAK6|KDSB_GEOLS 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=kdsB
PE=3 SV=1
Length = 252
Score = 144 bits (363), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 119/212 (56%), Gaps = 11/212 (5%)
Query: 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE 68
L +VATDD +IA+ Q G + IMTS GT+R E + L+ DI+VN+QGDE
Sbjct: 42 LVSRAIVATDDRRIADVIHQIGGEAIMTSTDHETGTDRLAEVARGLDA--DIIVNVQGDE 99
Query: 69 PLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLI 127
PLI+P +I+ ++ P T + +K D PN VK V DN+GYA+YFSR +
Sbjct: 100 PLIDPAMINQAIEPFLGNPGLKMGTLKSRVKCLHDFLSPNVVKVVTDNNGYALYFSRSPL 159
Query: 128 PYNKS--------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLE 179
P+ + + + H+G+ Y NFL Y + T L+L E LEQL+ LE
Sbjct: 160 PFFRDKWQDLKDEAFASGRLLCFKHVGLYVYQRNFLLEYAAMPQTFLELSEKLEQLRALE 219
Query: 180 NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 211
NG +++V++ + E+ GVD P+D+ K + M++
Sbjct: 220 NGIRIRVVETEFESLGVDTPDDLNKAKERMKQ 251
>sp|P44490|KDSB_HAEIN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=kdsB PE=1 SV=2
Length = 254
Score = 144 bits (363), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 123/207 (59%), Gaps = 10/207 (4%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71
+++ATD+E +A+ + FGA+V MTS + +GTER E ++KL +I+VNIQGDEPLI
Sbjct: 45 VIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLI 104
Query: 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
P I+ V L + S AV E+ F+PN VK + D GY +YFSR +IPY++
Sbjct: 105 PPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDR 164
Query: 132 SGKVNPQ--------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYK 183
+N Q YL H+GI +Y + F+K Y PT L+ E LEQL+VL NG +
Sbjct: 165 DQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGER 224
Query: 184 MKV-IKVDHEAHGVDAPEDVEKIESFM 209
+ V + + A GVD ED+EK+ + +
Sbjct: 225 IHVELAKEVPAVGVDTAEDLEKVRAIL 251
>sp|Q822T3|KDSB_CHLCV 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila
caviae (strain GPIC) GN=kdsB PE=3 SV=1
Length = 254
Score = 144 bits (363), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 118/198 (59%), Gaps = 5/198 (2%)
Query: 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72
++VATDD++I + FG D ++TS C NGTER E + + + +I+VNIQGDEP ++
Sbjct: 53 VIVATDDQRIMDHVLDFGGDCVLTSPECANGTERTAETISRYFPEAEIIVNIQGDEPCLQ 112
Query: 73 PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK 131
++D +V+ L+ P+ T V + + +VKCV D +G A+YFSR IP+
Sbjct: 113 HTVVDALVRKLEEFPEIQIVTPVAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPH-- 170
Query: 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH 191
+ + P LH+G+ ++ N L Y PTPL EDLEQL++LE+G + V V+
Sbjct: 171 --ILKKETPIYLHIGVYAFRRNALFNYIESSPTPLSQAEDLEQLRILEHGGSIHVCVVEA 228
Query: 192 EAHGVDAPEDVEKIESFM 209
++ VD PED+ K+E ++
Sbjct: 229 KSPSVDYPEDINKVEKYL 246
>sp|Q74BY2|KDSB_GEOSL 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=kdsB PE=3 SV=2
Length = 250
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 117/210 (55%), Gaps = 11/210 (5%)
Query: 5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNI 64
+ L +VVATDD++IA+ + FG V MTS GT+R E ++ +I+VN+
Sbjct: 38 ARARLVSEVVVATDDDRIAQAVRGFGGRVEMTSRDHETGTDRLAEVASRI--GAEIIVNV 95
Query: 65 QGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFS 123
QGDEPLIEP +ID + L P T + ++ D PN VK V D GYA+YFS
Sbjct: 96 QGDEPLIEPAMIDEAIAPLAENPAVRMGTLKSRIRTLHDFLSPNVVKVVTDLEGYALYFS 155
Query: 124 RGLIPYNKSGK--------VNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQL 175
R +P+ + + + H+G+ Y +FL + + PT L+L E LEQL
Sbjct: 156 RSPLPFFRDKWNDLKDESFASGRLLCYKHVGLYVYRRDFLMEFAKMPPTALELAEKLEQL 215
Query: 176 KVLENGYKMKVIKVDHEAHGVDAPEDVEKI 205
+ LENG +++V++ HE+ GVD P D+EK+
Sbjct: 216 RALENGCRIRVVETAHESIGVDTPNDLEKV 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,582,133
Number of Sequences: 539616
Number of extensions: 3691677
Number of successful extensions: 12130
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 10578
Number of HSP's gapped (non-prelim): 454
length of query: 215
length of database: 191,569,459
effective HSP length: 113
effective length of query: 102
effective length of database: 130,592,851
effective search space: 13320470802
effective search space used: 13320470802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)