Query 027992
Match_columns 215
No_of_seqs 210 out of 1320
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 04:37:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1212 KdsB CMP-2-keto-3-deox 100.0 1.1E-38 2.3E-43 245.1 17.7 205 4-212 38-245 (247)
2 TIGR00466 kdsB 3-deoxy-D-manno 100.0 2.7E-30 5.9E-35 207.8 20.0 194 9-203 38-238 (238)
3 PLN02917 CMP-KDO synthetase 100.0 1.2E-29 2.7E-34 209.2 22.9 212 4-215 82-293 (293)
4 COG1083 NeuA CMP-N-acetylneura 100.0 1E-28 2.2E-33 188.8 11.9 181 2-212 36-225 (228)
5 TIGR03584 PseF pseudaminic aci 100.0 5.6E-27 1.2E-31 186.6 17.6 178 3-210 33-221 (222)
6 PRK13368 3-deoxy-manno-octulos 99.9 1.1E-19 2.4E-24 146.0 19.7 198 5-209 38-238 (238)
7 cd02513 CMP-NeuAc_Synthase CMP 99.8 2.4E-19 5.1E-24 142.5 16.3 175 4-209 36-223 (223)
8 PF01128 IspD: 2-C-methyl-D-er 99.8 2.7E-18 5.9E-23 135.9 14.0 178 5-211 39-221 (221)
9 PRK05450 3-deoxy-manno-octulos 99.8 1.8E-16 3.9E-21 127.9 21.6 199 9-209 41-244 (245)
10 PRK13385 2-C-methyl-D-erythrit 99.8 9.9E-18 2.1E-22 134.2 14.1 179 4-211 40-225 (230)
11 PF02348 CTP_transf_3: Cytidyl 99.7 6.6E-18 1.4E-22 133.8 8.8 128 2-130 32-162 (217)
12 PLN02728 2-C-methyl-D-erythrit 99.7 7E-17 1.5E-21 130.6 14.6 180 6-213 64-248 (252)
13 COG1211 IspD 4-diphosphocytidy 99.7 3.9E-17 8.3E-22 129.0 11.8 177 5-211 43-228 (230)
14 cd02517 CMP-KDO-Synthetase CMP 99.7 1.9E-15 4.2E-20 121.4 21.1 201 6-208 38-239 (239)
15 PRK00155 ispD 2-C-methyl-D-ery 99.6 7.2E-15 1.6E-19 117.3 13.4 178 5-212 42-225 (227)
16 TIGR00453 ispD 2-C-methyl-D-er 99.6 1.4E-14 3E-19 114.9 14.9 174 6-209 39-217 (217)
17 cd02516 CDP-ME_synthetase CDP- 99.4 2.4E-12 5.2E-17 102.0 12.7 171 6-205 40-218 (218)
18 PRK09382 ispDF bifunctional 2- 99.4 1E-11 2.2E-16 105.9 16.2 166 6-211 45-214 (378)
19 COG1207 GlmU N-acetylglucosami 99.3 3.4E-10 7.3E-15 95.5 16.7 192 7-212 42-245 (460)
20 COG2068 Uncharacterized MobA-r 99.2 9.2E-11 2E-15 90.2 10.7 79 7-86 43-125 (199)
21 TIGR03552 F420_cofC 2-phospho- 99.2 5.7E-10 1.2E-14 87.0 13.1 79 10-91 45-123 (195)
22 cd02518 GT2_SpsF SpsF is a gly 99.1 3.6E-09 7.7E-14 84.8 15.5 77 5-85 35-115 (233)
23 COG1861 SpsF Spore coat polysa 99.1 5.6E-10 1.2E-14 86.6 9.4 84 4-92 38-125 (241)
24 PRK14356 glmU bifunctional N-a 99.1 1.5E-08 3.3E-13 88.9 17.4 195 5-212 43-246 (456)
25 cd02540 GT2_GlmU_N_bac N-termi 99.0 2.7E-08 5.9E-13 79.1 16.2 181 8-202 39-229 (229)
26 PRK14353 glmU bifunctional N-a 99.0 4.2E-08 9.1E-13 85.9 17.9 191 6-211 44-244 (446)
27 TIGR01173 glmU UDP-N-acetylglu 99.0 5.2E-08 1.1E-12 85.3 18.2 189 7-211 40-237 (451)
28 cd06915 NTP_transferase_WcbM_l 99.0 5.5E-08 1.2E-12 76.8 15.8 173 8-206 42-223 (223)
29 PRK14359 glmU bifunctional N-a 98.9 1.2E-07 2.6E-12 82.5 17.6 180 10-211 44-235 (430)
30 PRK14354 glmU bifunctional N-a 98.9 1.6E-07 3.4E-12 82.5 18.3 190 7-211 42-241 (458)
31 PRK14360 glmU bifunctional N-a 98.8 3.4E-07 7.4E-12 80.2 17.0 188 8-211 42-238 (450)
32 PRK14355 glmU bifunctional N-a 98.8 6.7E-07 1.5E-11 78.7 18.6 192 7-211 43-244 (459)
33 PRK00317 mobA molybdopterin-gu 98.7 5.3E-07 1.1E-11 70.1 13.7 74 8-85 42-116 (193)
34 PRK02726 molybdopterin-guanine 98.7 5.2E-07 1.1E-11 70.7 12.4 75 9-85 46-120 (200)
35 COG2266 GTP:adenosylcobinamide 98.6 1.7E-06 3.6E-11 65.2 13.5 71 9-84 40-112 (177)
36 PF01983 CofC: Guanylyl transf 98.6 4.6E-08 1E-12 77.1 3.7 69 10-84 44-114 (217)
37 PRK14358 glmU bifunctional N-a 98.6 8.5E-06 1.8E-10 72.2 18.3 190 6-211 46-246 (481)
38 PRK14352 glmU bifunctional N-a 98.5 8.6E-06 1.9E-10 72.2 17.4 189 8-210 45-246 (482)
39 cd04189 G1P_TT_long G1P_TT_lon 98.5 1.4E-05 3E-10 63.9 16.6 180 8-211 44-235 (236)
40 PF12804 NTP_transf_3: MobA-li 98.5 2.2E-06 4.9E-11 64.3 10.3 76 9-85 38-113 (160)
41 COG1920 Predicted nucleotidylt 98.5 3.4E-06 7.4E-11 64.3 10.8 74 10-92 45-119 (210)
42 TIGR03310 matur_ygfJ molybdenu 98.4 1E-06 2.2E-11 67.9 8.1 77 9-86 39-118 (188)
43 TIGR01208 rmlA_long glucose-1- 98.4 2.6E-05 5.6E-10 66.3 16.5 183 7-211 42-236 (353)
44 cd04182 GT_2_like_f GT_2_like_ 98.4 2.4E-06 5.2E-11 65.5 9.0 76 9-85 40-118 (186)
45 PRK14357 glmU bifunctional N-a 98.4 5E-05 1.1E-09 66.6 18.1 180 10-211 42-231 (448)
46 cd02503 MobA MobA catalyzes th 98.4 4.7E-06 1E-10 63.9 10.0 70 10-83 40-109 (181)
47 cd02538 G1P_TT_short G1P_TT_sh 98.3 8E-05 1.7E-09 59.8 16.9 183 7-211 43-239 (240)
48 TIGR02665 molyb_mobA molybdopt 98.3 6.8E-06 1.5E-10 63.3 10.1 75 9-85 40-115 (186)
49 PRK14490 putative bifunctional 98.2 5.5E-05 1.2E-09 64.8 14.0 72 9-83 213-284 (369)
50 cd06425 M1P_guanylylT_B_like_N 98.1 0.00034 7.3E-09 55.9 16.2 181 7-209 43-232 (233)
51 TIGR03202 pucB xanthine dehydr 98.1 1.8E-05 3.8E-10 61.3 8.4 79 8-86 39-124 (190)
52 PRK00560 molybdopterin-guanine 98.1 0.00012 2.5E-09 57.2 13.0 64 10-80 49-113 (196)
53 PRK15480 glucose-1-phosphate t 98.0 0.001 2.2E-08 55.3 17.1 182 7-210 46-241 (292)
54 cd06422 NTP_transferase_like_1 98.0 0.00077 1.7E-08 53.3 15.7 172 6-205 41-221 (221)
55 TIGR01207 rmlA glucose-1-phosp 97.9 0.00098 2.1E-08 55.2 16.0 182 6-210 41-237 (286)
56 PRK09451 glmU bifunctional N-a 97.9 0.001 2.2E-08 58.6 16.6 167 7-189 45-217 (456)
57 TIGR01099 galU UTP-glucose-1-p 97.9 0.001 2.2E-08 54.0 15.2 148 42-205 104-260 (260)
58 TIGR00454 conserved hypothetic 97.9 0.00017 3.7E-09 55.8 10.0 74 8-85 40-116 (183)
59 TIGR01105 galF UTP-glucose-1-p 97.8 0.0042 9.2E-08 51.7 18.4 183 6-207 45-274 (297)
60 cd02541 UGPase_prokaryotic Pro 97.8 0.0019 4E-08 52.7 15.9 153 42-210 104-265 (267)
61 COG1208 GCD1 Nucleoside-diphos 97.8 0.0031 6.6E-08 53.9 16.6 188 3-211 40-236 (358)
62 PRK14500 putative bifunctional 97.8 0.00065 1.4E-08 57.7 12.3 73 9-84 199-271 (346)
63 cd06426 NTP_transferase_like_2 97.6 0.005 1.1E-07 48.5 14.8 168 7-205 41-219 (220)
64 TIGR02092 glgD glucose-1-phosp 97.6 0.0049 1.1E-07 52.7 15.2 191 3-208 42-251 (369)
65 PRK00576 molybdopterin-guanine 97.5 0.00072 1.6E-08 51.8 8.7 75 8-85 27-102 (178)
66 PF00483 NTP_transferase: Nucl 97.5 0.0017 3.7E-08 52.1 10.4 188 6-211 42-247 (248)
67 cd06428 M1P_guanylylT_A_like_N 97.5 0.018 3.8E-07 46.7 16.4 186 8-208 45-256 (257)
68 KOG1322 GDP-mannose pyrophosph 97.4 0.0073 1.6E-07 50.2 13.7 184 3-210 48-244 (371)
69 PRK10122 GalU regulator GalF; 97.4 0.031 6.6E-07 46.6 17.8 186 6-209 45-276 (297)
70 cd02524 G1P_cytidylyltransfera 97.4 0.019 4E-07 46.5 16.1 180 6-212 40-248 (253)
71 COG1209 RfbA dTDP-glucose pyro 97.4 0.039 8.4E-07 44.9 17.1 182 7-211 43-237 (286)
72 cd02523 PC_cytidylyltransferas 97.3 0.0033 7.1E-08 49.9 10.5 69 7-79 41-113 (229)
73 PRK13389 UTP--glucose-1-phosph 97.3 0.037 8E-07 46.2 17.0 151 42-209 113-279 (302)
74 TIGR02091 glgC glucose-1-phosp 97.3 0.022 4.7E-07 48.5 15.9 196 6-211 41-259 (361)
75 TIGR02623 G1P_cyt_trans glucos 97.3 0.033 7.3E-07 45.1 16.0 178 7-212 42-247 (254)
76 PRK05293 glgC glucose-1-phosph 97.2 0.02 4.3E-07 49.2 14.5 190 4-209 44-257 (380)
77 COG0746 MobA Molybdopterin-gua 97.2 0.0048 1E-07 48.1 9.7 76 8-87 41-116 (192)
78 PRK14489 putative bifunctional 97.2 0.0041 8.9E-08 53.3 9.9 73 9-85 45-120 (366)
79 PRK02862 glgC glucose-1-phosph 97.0 0.044 9.6E-07 48.0 15.3 196 6-210 46-273 (429)
80 cd04183 GT2_BcE_like GT2_BcbE_ 96.9 0.061 1.3E-06 42.6 14.0 174 8-203 42-231 (231)
81 cd04181 NTP_transferase NTP_tr 96.7 0.13 2.9E-06 40.0 14.5 129 8-156 42-178 (217)
82 PRK00725 glgC glucose-1-phosph 96.4 0.47 1E-05 41.5 17.2 196 6-210 58-287 (425)
83 PLN02241 glucose-1-phosphate a 96.4 0.25 5.3E-06 43.4 15.3 198 5-210 45-281 (436)
84 COG1213 Predicted sugar nucleo 96.3 0.088 1.9E-06 42.0 10.9 178 4-211 40-230 (239)
85 PRK00844 glgC glucose-1-phosph 96.2 0.69 1.5E-05 40.2 16.9 197 4-210 46-276 (407)
86 cd02509 GDP-M1P_Guanylyltransf 95.6 0.39 8.4E-06 39.4 12.4 89 7-97 46-144 (274)
87 cd06438 EpsO_like EpsO protein 95.1 0.48 1E-05 35.9 10.8 80 11-91 29-114 (183)
88 PF09837 DUF2064: Uncharacteri 95.1 0.33 7.1E-06 34.9 9.1 62 27-92 31-93 (122)
89 cd04197 eIF-2B_epsilon_N The N 94.5 0.57 1.2E-05 36.8 9.9 116 6-125 42-176 (217)
90 TIGR03030 CelA cellulose synth 94.4 0.54 1.2E-05 44.0 11.0 66 20-88 193-258 (713)
91 PRK11498 bcsA cellulose syntha 94.0 0.69 1.5E-05 44.0 10.8 74 12-88 294-369 (852)
92 cd06435 CESA_NdvC_like NdvC_li 94.0 0.78 1.7E-05 36.0 9.9 73 11-84 29-110 (236)
93 cd02508 ADP_Glucose_PP ADP-glu 93.5 0.41 8.8E-06 37.1 7.3 79 6-86 41-137 (200)
94 cd06421 CESA_CelA_like CESA_Ce 93.5 1 2.2E-05 35.2 9.7 74 12-88 35-114 (234)
95 cd02511 Beta4Glucosyltransfera 93.5 1.6 3.4E-05 34.5 10.8 72 11-88 27-101 (229)
96 cd04198 eIF-2B_gamma_N The N-t 93.3 0.58 1.3E-05 36.7 8.0 82 7-94 43-134 (214)
97 cd04195 GT2_AmsE_like GT2_AmsE 92.9 1.5 3.3E-05 33.3 9.7 77 11-92 30-114 (201)
98 PF04028 DUF374: Domain of unk 92.6 1.2 2.7E-05 28.9 7.3 66 1-69 1-69 (74)
99 PRK13915 putative glucosyl-3-p 91.6 2.3 4.9E-05 35.6 9.8 79 9-89 61-147 (306)
100 cd04187 DPM1_like_bac Bacteria 91.4 4.2 9.1E-05 30.4 10.4 45 45-92 70-114 (181)
101 PRK10714 undecaprenyl phosphat 91.0 3.3 7.1E-05 34.9 10.2 75 12-91 40-123 (325)
102 PRK11204 N-glycosyltransferase 90.8 3.4 7.3E-05 35.8 10.5 73 11-88 84-164 (420)
103 TIGR01479 GMP_PMI mannose-1-ph 90.6 6.3 0.00014 35.0 12.1 87 9-97 47-145 (468)
104 COG0448 GlgC ADP-glucose pyrop 90.2 12 0.00025 32.5 14.4 185 7-206 49-257 (393)
105 PF00535 Glycos_transf_2: Glyc 89.5 2.2 4.8E-05 30.8 7.2 73 9-86 26-106 (169)
106 cd06439 CESA_like_1 CESA_like_ 89.5 3.6 7.8E-05 32.6 9.0 70 12-85 62-136 (251)
107 cd02525 Succinoglycan_BP_ExoA 88.5 5.4 0.00012 31.2 9.3 70 11-85 32-108 (249)
108 cd06423 CESA_like CESA_like is 88.3 6.5 0.00014 28.2 9.1 74 10-88 26-108 (180)
109 cd04192 GT_2_like_e Subfamily 85.6 10 0.00022 29.1 9.3 38 46-86 73-110 (229)
110 PLN02726 dolichyl-phosphate be 85.4 12 0.00026 29.7 9.7 37 46-85 84-120 (243)
111 COG2121 Uncharacterized protei 84.8 5.7 0.00012 31.2 7.1 56 18-74 79-135 (214)
112 COG1210 GalU UDP-glucose pyrop 84.3 22 0.00048 29.3 16.0 161 30-208 96-268 (291)
113 cd04188 DPG_synthase DPG_synth 84.2 17 0.00036 27.9 10.2 79 10-92 30-117 (211)
114 cd02520 Glucosylceramide_synth 83.8 17 0.00037 27.6 9.8 35 47-84 78-112 (196)
115 cd00761 Glyco_tranf_GTA_type G 83.2 13 0.00028 25.8 8.9 75 10-89 26-108 (156)
116 PRK14583 hmsR N-glycosyltransf 83.2 18 0.00038 31.8 10.6 73 11-88 105-185 (444)
117 cd04184 GT2_RfbC_Mx_like Myxoc 83.1 18 0.00038 27.3 10.0 45 42-89 69-114 (202)
118 cd02510 pp-GalNAc-T pp-GalNAc- 83.0 14 0.0003 30.4 9.3 57 30-91 59-116 (299)
119 cd04186 GT_2_like_c Subfamily 82.4 16 0.00034 26.3 8.9 75 10-89 26-105 (166)
120 cd06442 DPM1_like DPM1_like re 81.9 21 0.00046 27.4 10.5 75 11-90 28-111 (224)
121 cd06427 CESA_like_2 CESA_like_ 80.8 25 0.00055 27.6 10.6 72 12-86 34-112 (241)
122 cd04191 Glucan_BSP_ModH Glucan 80.8 23 0.00049 28.7 9.6 57 31-88 69-125 (254)
123 PRK05454 glucosyltransferase M 80.8 22 0.00048 33.3 10.6 76 12-88 161-250 (691)
124 cd04196 GT_2_like_d Subfamily 80.7 22 0.00048 26.9 10.3 43 43-88 66-109 (214)
125 cd04179 DPM_DPG-synthase_like 80.3 21 0.00046 26.4 10.3 72 10-85 28-106 (185)
126 TIGR03111 glyc2_xrt_Gpos1 puta 78.5 33 0.00072 30.1 10.6 45 42-89 117-162 (439)
127 PTZ00260 dolichyl-phosphate be 77.6 37 0.0008 28.6 10.3 69 11-84 108-188 (333)
128 TIGR03469 HonB hopene-associat 77.0 27 0.00058 30.0 9.5 46 46-92 119-167 (384)
129 cd04185 GT_2_like_b Subfamily 72.0 40 0.00087 25.4 9.8 72 11-84 27-105 (202)
130 PF13704 Glyco_tranf_2_4: Glyc 70.2 22 0.00047 23.7 6.0 66 9-74 18-88 (97)
131 cd02507 eIF-2B_gamma_N_like Th 69.5 19 0.00042 28.1 6.3 71 7-82 43-125 (216)
132 TIGR00177 molyb_syn molybdenum 68.2 25 0.00054 25.7 6.3 68 14-83 24-91 (144)
133 PF10111 Glyco_tranf_2_2: Glyc 66.0 72 0.0016 26.0 10.4 71 20-93 50-126 (281)
134 cd06433 GT_2_WfgS_like WfgS an 65.9 52 0.0011 24.3 8.1 69 12-85 29-102 (202)
135 TIGR01556 rhamnosyltran L-rham 65.7 70 0.0015 25.8 10.5 75 10-86 21-101 (281)
136 TIGR03472 HpnI hopanoid biosyn 65.5 86 0.0019 26.8 10.2 37 46-85 117-153 (373)
137 PF13641 Glyco_tranf_2_3: Glyc 65.5 11 0.00024 29.1 4.3 60 22-84 48-112 (228)
138 cd06913 beta3GnTL1_like Beta 1 63.8 65 0.0014 24.7 9.2 43 47-92 76-118 (219)
139 COG2943 MdoH Membrane glycosyl 63.7 34 0.00074 31.1 7.1 67 24-91 203-273 (736)
140 PRK10018 putative glycosyl tra 62.2 88 0.0019 25.7 9.7 69 12-85 36-112 (279)
141 cd00758 MoCF_BD MoCF_BD: molyb 60.7 40 0.00087 24.2 6.2 67 15-83 17-83 (133)
142 COG1216 Predicted glycosyltran 60.2 97 0.0021 25.5 14.3 61 30-92 57-118 (305)
143 PF00107 ADH_zinc_N: Zinc-bind 59.6 25 0.00054 24.6 4.9 65 11-85 15-81 (130)
144 cd06420 GT2_Chondriotin_Pol_N 57.9 72 0.0016 23.3 8.8 34 47-83 71-104 (182)
145 cd06434 GT2_HAS Hyaluronan syn 56.9 88 0.0019 24.1 8.5 69 11-84 29-103 (235)
146 TIGR00334 5S_RNA_mat_M5 ribonu 55.7 81 0.0018 24.2 7.1 69 10-83 2-70 (174)
147 COG0075 Serine-pyruvate aminot 55.0 88 0.0019 27.2 8.1 79 11-91 81-164 (383)
148 cd02173 ECT CTP:phosphoethanol 54.2 44 0.00096 24.8 5.5 34 6-39 64-97 (152)
149 KOG2862 Alanine-glyoxylate ami 53.1 1.3E+02 0.0028 25.6 8.3 80 11-92 93-177 (385)
150 PF13712 Glyco_tranf_2_5: Glyc 52.8 82 0.0018 24.8 7.2 54 42-97 40-95 (217)
151 TIGR02990 ectoine_eutA ectoine 51.4 52 0.0011 26.5 5.9 78 3-82 113-204 (239)
152 cd02174 CCT CTP:phosphocholine 51.1 95 0.0021 23.0 6.9 35 6-40 64-98 (150)
153 TIGR00200 cinA_nterm competenc 50.6 49 0.0011 29.0 6.0 57 13-70 16-72 (413)
154 COG1215 Glycosyltransferases, 49.8 86 0.0019 27.0 7.5 72 12-86 86-165 (439)
155 PRK13010 purU formyltetrahydro 49.4 1.1E+02 0.0023 25.5 7.5 65 10-77 121-188 (289)
156 PRK01215 competence damage-ind 49.4 59 0.0013 26.6 6.0 56 14-70 20-75 (264)
157 PRK03673 hypothetical protein; 48.0 87 0.0019 27.3 7.1 57 12-69 16-72 (396)
158 cd00886 MogA_MoaB MogA_MoaB fa 47.7 45 0.00098 24.6 4.7 64 18-83 21-86 (152)
159 cd02522 GT_2_like_a GT_2_like_ 47.3 1.2E+02 0.0027 22.9 9.3 69 10-85 28-99 (221)
160 PF05991 NYN_YacP: YacP-like N 46.8 27 0.00058 26.4 3.4 24 11-34 95-118 (166)
161 KOG2836 Protein tyrosine phosp 46.6 50 0.0011 24.3 4.5 69 22-95 33-104 (173)
162 smart00852 MoCF_biosynth Proba 45.9 56 0.0012 23.4 4.9 65 16-82 17-81 (135)
163 cd00885 cinA Competence-damage 45.1 1.3E+02 0.0029 22.7 7.0 58 14-72 16-73 (170)
164 PF13506 Glyco_transf_21: Glyc 44.9 1.1E+02 0.0025 23.0 6.7 38 46-85 21-58 (175)
165 PF10087 DUF2325: Uncharacteri 44.6 92 0.002 20.9 5.5 43 9-54 48-96 (97)
166 COG1058 CinA Predicted nucleot 42.3 1.6E+02 0.0036 24.0 7.4 52 14-66 18-69 (255)
167 COG3473 Maleate cis-trans isom 42.1 1.8E+02 0.0038 23.2 7.6 74 4-79 112-199 (238)
168 PF00994 MoCF_biosynth: Probab 42.0 29 0.00062 25.2 2.8 63 18-82 18-80 (144)
169 COG0552 FtsY Signal recognitio 40.9 1.3E+02 0.0029 25.6 6.8 61 20-82 184-246 (340)
170 COG0669 CoaD Phosphopantethein 40.3 1.6E+02 0.0035 22.2 6.9 73 8-80 60-136 (159)
171 PF00763 THF_DHG_CYH: Tetrahyd 39.9 1.3E+02 0.0028 21.1 6.6 55 24-80 52-110 (117)
172 COG4747 ACT domain-containing 39.5 1.4E+02 0.0031 21.4 6.4 80 6-85 38-128 (142)
173 PRK13011 formyltetrahydrofolat 38.8 1.6E+02 0.0036 24.3 7.1 61 13-76 120-183 (286)
174 PF14097 SpoVAE: Stage V sporu 38.6 1.8E+02 0.0039 22.3 10.4 74 12-88 1-82 (180)
175 KOG0024 Sorbitol dehydrogenase 38.6 92 0.002 26.5 5.5 75 6-86 190-266 (354)
176 COG0303 MoeA Molybdopterin bio 38.1 2.4E+02 0.0051 24.8 8.2 66 14-81 200-265 (404)
177 PRK10073 putative glycosyl tra 38.1 2.4E+02 0.0052 23.6 10.6 68 12-85 37-112 (328)
178 PRK00536 speE spermidine synth 37.9 70 0.0015 26.2 4.7 30 57-86 162-191 (262)
179 PF13271 DUF4062: Domain of un 37.4 1.1E+02 0.0023 20.0 4.8 29 69-98 36-64 (83)
180 COG4262 Predicted spermidine s 36.6 1.1E+02 0.0025 26.6 5.8 72 12-85 347-426 (508)
181 PRK08247 cystathionine gamma-s 36.4 2.7E+02 0.0058 23.7 9.2 70 11-86 91-165 (366)
182 cd06436 GlcNAc-1-P_transferase 36.4 1.8E+02 0.004 21.8 8.0 73 11-84 26-115 (191)
183 COG1412 Uncharacterized protei 35.8 51 0.0011 24.1 3.3 23 12-34 99-121 (136)
184 PRK05967 cystathionine beta-ly 35.3 3E+02 0.0066 23.9 9.0 57 24-86 122-178 (395)
185 PF03484 B5: tRNA synthetase B 35.2 99 0.0021 19.4 4.2 25 187-214 46-70 (70)
186 KOG2978 Dolichol-phosphate man 35.2 2.2E+02 0.0048 22.4 8.7 71 11-86 36-116 (238)
187 COG0079 HisC Histidinol-phosph 35.0 2.9E+02 0.0063 23.6 9.0 71 11-84 100-175 (356)
188 COG0626 MetC Cystathionine bet 34.5 2.8E+02 0.0061 24.3 8.1 71 11-86 103-178 (396)
189 PRK07239 bifunctional uroporph 34.0 2.1E+02 0.0045 24.5 7.3 76 1-83 1-83 (381)
190 TIGR02764 spore_ybaN_pdaB poly 34.0 2.1E+02 0.0045 21.6 8.7 66 19-85 109-179 (191)
191 cd06437 CESA_CaSu_A2 Cellulose 33.2 2.3E+02 0.0049 21.8 9.0 36 46-84 78-113 (232)
192 PF01053 Cys_Met_Meta_PP: Cys/ 33.0 2E+02 0.0044 24.9 7.1 65 22-92 111-175 (386)
193 COG0421 SpeE Spermidine syntha 32.9 2.8E+02 0.006 23.0 7.5 80 6-93 96-188 (282)
194 PRK00549 competence damage-ind 32.9 1.3E+02 0.0027 26.5 5.8 57 13-70 16-72 (414)
195 cd02526 GT2_RfbF_like RfbF is 32.6 2.3E+02 0.0049 21.7 8.3 68 10-80 24-97 (237)
196 PF13684 Dak1_2: Dihydroxyacet 32.5 2.3E+02 0.0051 23.7 7.1 55 12-68 98-153 (313)
197 TIGR01501 MthylAspMutase methy 32.4 2E+02 0.0043 20.9 6.1 57 23-85 22-78 (134)
198 TIGR02667 moaB_proteo molybden 31.4 1.6E+02 0.0036 22.0 5.6 63 19-83 24-88 (163)
199 COG1063 Tdh Threonine dehydrog 31.1 3.3E+02 0.0071 23.1 8.4 70 6-85 189-261 (350)
200 PRK02261 methylaspartate mutas 31.1 1.9E+02 0.004 21.0 5.6 57 23-85 24-80 (137)
201 cd02072 Glm_B12_BD B12 binding 30.8 2.1E+02 0.0045 20.7 5.8 13 23-35 20-32 (128)
202 TIGR00288 conserved hypothetic 29.9 88 0.0019 23.6 3.8 30 5-34 101-133 (160)
203 PRK08114 cystathionine beta-ly 29.7 3.5E+02 0.0076 23.5 8.0 70 11-86 102-176 (395)
204 PRK13355 bifunctional HTH-doma 28.7 4.1E+02 0.009 23.8 8.6 73 11-86 233-313 (517)
205 cd00887 MoeA MoeA family. Memb 28.4 2.3E+02 0.005 24.6 6.7 66 16-83 194-259 (394)
206 PRK06027 purU formyltetrahydro 28.3 2.4E+02 0.0052 23.3 6.5 24 11-34 118-141 (286)
207 PRK03670 competence damage-ind 27.8 3.2E+02 0.0069 22.2 7.0 57 13-70 16-73 (252)
208 PF07788 DUF1626: Protein of u 27.8 78 0.0017 20.3 2.7 24 9-32 45-70 (70)
209 TIGR03599 YloV DAK2 domain fus 27.7 2.9E+02 0.0063 25.2 7.3 54 12-67 316-370 (530)
210 KOG0053 Cystathionine beta-lya 25.2 4.7E+02 0.01 23.0 8.4 63 22-92 133-196 (409)
211 PRK11234 nfrB bacteriophage N4 24.6 3.6E+02 0.0077 25.7 7.5 72 12-85 95-181 (727)
212 PF04900 Fcf1: Fcf1; InterPro 24.4 92 0.002 21.1 2.9 21 13-33 67-88 (101)
213 PRK10063 putative glycosyl tra 24.0 3.7E+02 0.0081 21.4 9.0 54 12-70 35-95 (248)
214 TIGR00655 PurU formyltetrahydr 23.5 4.2E+02 0.0092 21.8 7.1 23 12-34 114-136 (280)
215 PRK14194 bifunctional 5,10-met 23.2 4.5E+02 0.0098 22.0 8.3 60 23-84 55-118 (301)
216 PRK10680 molybdopterin biosynt 23.1 2.7E+02 0.0058 24.5 6.1 64 18-83 205-268 (411)
217 KOG2599 Pyridoxal/pyridoxine/p 22.6 1.1E+02 0.0025 25.3 3.4 18 196-213 163-180 (308)
218 PRK07671 cystathionine beta-ly 22.6 4.4E+02 0.0096 22.5 7.3 57 24-86 107-163 (377)
219 PRK14489 putative bifunctional 22.3 58 0.0013 27.9 1.8 19 192-210 180-198 (366)
220 PRK14690 molybdopterin biosynt 22.2 2.9E+02 0.0062 24.3 6.1 65 17-83 220-284 (419)
221 COG0031 CysK Cysteine synthase 22.1 4.8E+02 0.01 21.9 8.9 79 12-92 87-175 (300)
222 PLN03013 cysteine synthase 22.0 5E+02 0.011 23.0 7.5 64 9-73 198-263 (429)
223 cd03767 SR_Res_par Serine reco 22.0 3.2E+02 0.0069 19.8 7.8 62 22-86 21-89 (146)
224 COG3453 Uncharacterized protei 22.0 3.1E+02 0.0068 19.8 9.6 80 10-93 6-93 (130)
225 PRK01839 Maf-like protein; Rev 22.0 2E+02 0.0044 22.6 4.7 79 5-84 4-112 (209)
226 PTZ00308 ethanolamine-phosphat 21.5 2.5E+02 0.0054 24.1 5.4 73 5-82 253-330 (353)
227 PF00448 SRP54: SRP54-type pro 21.4 3.9E+02 0.0083 20.6 8.1 64 20-84 46-110 (196)
228 cd05212 NAD_bind_m-THF_DH_Cycl 21.4 3.3E+02 0.0072 19.8 6.1 20 57-76 71-90 (140)
229 PRK07309 aromatic amino acid a 21.2 5.2E+02 0.011 22.0 9.7 76 11-86 116-198 (391)
230 KOG0062 ATPase component of AB 21.0 6.3E+02 0.014 23.2 7.8 73 18-93 458-535 (582)
231 COG2805 PilT Tfp pilus assembl 20.9 3.7E+02 0.008 22.9 6.1 50 40-94 180-230 (353)
232 PLN02366 spermidine synthase 20.7 2.2E+02 0.0048 23.9 4.9 29 57-85 197-225 (308)
233 PRK06207 aspartate aminotransf 20.6 5.5E+02 0.012 22.0 9.8 73 11-86 127-210 (405)
234 PRK14175 bifunctional 5,10-met 20.5 5E+02 0.011 21.6 8.1 59 23-83 54-116 (286)
235 PRK01045 ispH 4-hydroxy-3-meth 20.4 5E+02 0.011 21.7 6.9 68 11-85 31-111 (298)
236 COG1751 Uncharacterized conser 20.3 1.7E+02 0.0037 22.0 3.6 62 12-73 53-142 (186)
237 COG1606 ATP-utilizing enzymes 20.3 3.5E+02 0.0075 22.3 5.7 58 21-85 9-69 (269)
238 PF02887 PK_C: Pyruvate kinase 20.2 2.9E+02 0.0063 19.1 4.8 66 10-84 17-85 (117)
239 PRK14716 bacteriophage N4 adso 20.0 6.6E+02 0.014 22.7 8.6 70 12-82 98-182 (504)
240 KOG2380 Prephenate dehydrogena 20.0 1.6E+02 0.0035 25.4 3.9 56 9-65 108-168 (480)
No 1
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-38 Score=245.11 Aligned_cols=205 Identities=44% Similarity=0.736 Sum_probs=184.0
Q ss_pred ccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 4 MCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 4 a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
|.++ ..++|||+||+++|.+.++++|.+++++..++.+|++|+.+++..+. .+.++|+.+|||.||+.++.|+++++.
T Consensus 38 a~~s-~~~rvvVATDde~I~~av~~~G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~ 116 (247)
T COG1212 38 ALKS-GADRVVVATDDERIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAEN 116 (247)
T ss_pred HHHc-CCCeEEEEcCCHHHHHHHHHhCCEEEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHH
Confidence 4454 78999999999999999999999999999999999999999999984 466899999999999999999999999
Q ss_pred HHcCCCceEEeecccCC-CCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCC
Q 027992 83 LQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL 161 (215)
Q Consensus 83 ~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~ 161 (215)
++++ +..+++.+.+.. .++.++|+-+|++.+.+|+++||+|++|||.|+. ....|+++|+|+|+|+.++|.+|..+
T Consensus 117 L~~~-~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~--~~~~p~l~HIGIYayr~~~L~~f~~~ 193 (247)
T COG1212 117 LENS-NADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN--FGGTPFLRHIGIYAYRAGFLERFVAL 193 (247)
T ss_pred HHhC-CcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc--cCCcchhheeehHHhHHHHHHHHHhc
Confidence 9865 677777777765 4556899999999999999999999999998864 23378999999999999999999999
Q ss_pred CCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHhh
Q 027992 162 HPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 162 ~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~~ 212 (215)
.++++|+.|.|||+|++|.|++|++-..+ ..+++|||++||+.|+++++..
T Consensus 194 ~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~~ 245 (247)
T COG1212 194 KPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSNN 245 (247)
T ss_pred CCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999998876 6789999999999999999764
No 2
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.97 E-value=2.7e-30 Score=207.77 Aligned_cols=194 Identities=42% Similarity=0.664 Sum_probs=159.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 027992 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 87 (215)
Q Consensus 9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~ 87 (215)
.+++|+|+|+++++.+.++++|++++++.....+|++++..+++.+. .+.|+|++++||+||++++.|+++++.+.+.
T Consensus 38 ~~d~VvVvt~~~~i~~~~~~~g~~~v~~~~~~~~Gt~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~- 116 (238)
T TIGR00466 38 GADRCIVATDDESVAQTCQKFGIEVCMTSKHHNSGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK- 116 (238)
T ss_pred CCCeEEEEeCHHHHHHHHHHcCCEEEEeCCCCCChhHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC-
Confidence 49999999999999999999999887765566788988877776652 2568999999999999999999999998542
Q ss_pred CceEEeecccCC-CCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCC----eeEEeeeeeechHHHhhCcCCC
Q 027992 88 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP----YLLHLGIQSYDSNFLKIYPGLH 162 (215)
Q Consensus 88 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p----~~~~~~~~~~~~~~l~~~~~~~ 162 (215)
+..+++.+.+.. ....++|+++|++.+.+|++.||++..+|+.|+..+..++| ++.|.|.|+|+.++|.+|..++
T Consensus 117 ~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~ 196 (238)
T TIGR00466 117 NVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWK 196 (238)
T ss_pred CCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCC
Confidence 233444455654 34456789999887788999999999888888754322333 5679999999999999999999
Q ss_pred CCCCCCccchhhhhhhhcCCeeEEEEecCC-CCCCCCHHHHH
Q 027992 163 PTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPEDVE 203 (215)
Q Consensus 163 ~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~-~idIdt~~Dl~ 203 (215)
++++|+.|.|||+|++++|++|+++..+.. ++.||||+|++
T Consensus 197 ~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~~ 238 (238)
T TIGR00466 197 PCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDLE 238 (238)
T ss_pred CCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHcC
Confidence 999999999999999999999999988755 78999999973
No 3
>PLN02917 CMP-KDO synthetase
Probab=99.97 E-value=1.2e-29 Score=209.24 Aligned_cols=212 Identities=89% Similarity=1.328 Sum_probs=176.3
Q ss_pred ccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 4 MCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 4 a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+++++.++.|||+++++++.+.+.++|+.++.++....+|++++..|+..+..+.|++++++||+||+++++|+++++.+
T Consensus 82 a~~~~~~~~VVV~~~~e~I~~~~~~~~v~vi~~~~~~~~GT~~~~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~ 161 (293)
T PLN02917 82 AKLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 161 (293)
T ss_pred HHcCCCCCEEEEECChHHHHHHHHHcCCEEEeCCcccCCchHHHHHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHH
Confidence 44566778899999999999999888988877776667888888888888854579999999999999999999999998
Q ss_pred HcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCC
Q 027992 84 QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP 163 (215)
Q Consensus 84 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~ 163 (215)
.++.+.++++.+.+.+.+....+.+++++.+++|.++||++..||+.++....|..+...|.|.|+|+.+.|..+..+..
T Consensus 162 ~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~ 241 (293)
T PLN02917 162 QAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPP 241 (293)
T ss_pred HhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCC
Confidence 76566666655454443334566788877777898889999888887764445556678899999999998888888888
Q ss_pred CCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhhcCC
Q 027992 164 TPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS 215 (215)
Q Consensus 164 ~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~~~~ 215 (215)
+..+++++|+++++++.|.+|..+..+.+.+.|||++||..||++++.+|+|
T Consensus 242 ~n~e~e~yLtdl~~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~~~~ 293 (293)
T PLN02917 242 TPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRERNIS 293 (293)
T ss_pred CcccchhccHHHHHHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 8888888999999988999999888777899999999999999999999886
No 4
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1e-28 Score=188.79 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=137.0
Q ss_pred ccccccCCCCcEEEEcCcHHHHHHHHHcCCeE-EeCCCCCCCchHH----HHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992 2 LVMCHSFLFCGLVVATDDEKIAECCQQFGADV-IMTSESCRNGTER----CNEALQKLEKKYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 2 ~~a~~~~~~d~ivV~td~~~i~~~~~~~g~~v-~~~~~~~~~~~~~----i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i 76 (215)
.+|+.|+.||+|||+||+++|.+.|+++|+++ +.||+++++|+++ +.+++..+....|.+++++||+||++..+|
T Consensus 36 ~aA~ns~~fd~VviSsDs~~Il~~A~~ygak~~~~Rp~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~i 115 (228)
T COG1083 36 EAALNSKLFDKVVISSDSEEILEEAKKYGAKVFLKRPKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHI 115 (228)
T ss_pred HHHhcCCccceEEEcCCcHHHHHHHHHhCccccccCChhhccCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHH
Confidence 47899999999999999999999999999999 8999999998774 456666665677899999999999999999
Q ss_pred HHHHHHHH-cCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeech--H
Q 027992 77 DGVVKALQ-AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDS--N 153 (215)
Q Consensus 77 ~~~i~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~--~ 153 (215)
+++++.|. ...+++++++ +.. ++|... ....+|....+.... .. ..|||++|..|+.||.+|.. +
T Consensus 116 k~A~e~f~~~~~~sl~sa~--e~e----~~p~k~--f~~~~~~~~~~~~~~--~~--~~rrQ~Lpk~Y~~NgaiYi~~~~ 183 (228)
T COG1083 116 KEAFEKFLNNQYDSLFSAV--ECE----HHPYKA--FSLNNGEVKPVNEDP--DF--ETRRQDLPKAYRENGAIYINKKD 183 (228)
T ss_pred HHHHHHHhcCCCcceEEEe--ecc----cchHHH--HHhcCCceeecccCC--cc--ccccccchhhhhhcCcEEEehHH
Confidence 99999996 3568888864 543 233332 223446655443321 11 25799999999999877743 4
Q ss_pred HHhhCcCCCCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHhh
Q 027992 154 FLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 154 ~l~~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~~ 212 (215)
.+.+.. .+ .+.+..+++++ .+++||||+.||++||.++..+
T Consensus 184 ~l~e~~----------------~~--f~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~~ 225 (228)
T COG1083 184 ALLEND----------------CF--FIPNTILYEMPEDESIDIDTELDLEIAENLIFLK 225 (228)
T ss_pred HHhhcC----------------ce--ecCCceEEEcCcccccccccHHhHHHHHHHhhhh
Confidence 333211 11 34456667764 7999999999999999998754
No 5
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.95 E-value=5.6e-27 Score=186.56 Aligned_cols=178 Identities=24% Similarity=0.302 Sum_probs=132.0
Q ss_pred cccccCCCCcEEEEcCcHHHHHHHHHcCCeE-EeCCCCCCCch----HHHHHHHHHhc--CCCCEEEEecCCCCCCCHHH
Q 027992 3 VMCHSFLFCGLVVATDDEKIAECCQQFGADV-IMTSESCRNGT----ERCNEALQKLE--KKYDIVVNIQGDEPLIEPEI 75 (215)
Q Consensus 3 ~a~~~~~~d~ivV~td~~~i~~~~~~~g~~v-~~~~~~~~~~~----~~i~~~l~~~~--~~~d~v~~~~~d~Pli~~~~ 75 (215)
+|++++.++.|+|+||+++|+++++++|+.+ +.|+++++++. .++.+|+..+. .+.|+|++++||+||+++++
T Consensus 33 ~a~~s~~~d~IvVstd~~~i~~~a~~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~ 112 (222)
T TIGR03584 33 AALNSGLFDKVVVSTDDEEIAEVAKSYGASVPFLRPKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKI 112 (222)
T ss_pred HHHhCCCCCEEEEeCCCHHHHHHHHHcCCEeEEeChHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHH
Confidence 5677889999999999999999999999987 56888776543 46899998773 34799999999999999999
Q ss_pred HHHHHHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeee--ch
Q 027992 76 IDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSY--DS 152 (215)
Q Consensus 76 i~~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~--~~ 152 (215)
|+++++.+.+ +.|+++++. +.. ++|.+.+ ..+++|.+..+... . ...|||++|+.|..||.+| +.
T Consensus 113 I~~~i~~~~~~~~ds~~sv~--~~~----~~~~~~~-~~~~~g~~~~~~~~----~-~~~~rQd~~~~y~~nga~y~~~~ 180 (222)
T TIGR03584 113 LKEAFELLKQPNAHFVFSVT--SFA----FPIQRAF-KLKENGGVEMFFPE----H-FNTRSQDLEEAYHDAGQFYWGKS 180 (222)
T ss_pred HHHHHHHHHhCCCCEEEEee--ccC----CChHHhe-EECCCCcEEecCCC----c-ccCCCCCCchheeeCCeEEEEEH
Confidence 9999999974 478888865 432 2333322 22466765443321 1 1247899998888888766 55
Q ss_pred HHHhhCcCCCCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHH
Q 027992 153 NFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 153 ~~l~~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~ 210 (215)
+.+.+... + .|.++..++++ .+++||||++||++||.+++
T Consensus 181 ~~~~~~~~----------------~--~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~~ 221 (222)
T TIGR03584 181 QAWLESGP----------------I--FSPHSIPIVLPRHLVQDIDTLEDWERAELLYK 221 (222)
T ss_pred HHHHhcCC----------------c--cCCCcEEEEeCccceeCCCCHHHHHHHHHHHh
Confidence 54433221 1 35667777764 79999999999999999974
No 6
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.85 E-value=1.1e-19 Score=146.03 Aligned_cols=198 Identities=38% Similarity=0.638 Sum_probs=132.5
Q ss_pred cccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 5 ~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
.++..+++|+|+|+++++++.++.+|++++.++....+|+.++.+++..+ +.|.+++++||+||+++++|+++++.+.
T Consensus 38 ~~~~~~~~ivv~t~~~~i~~~~~~~~~~v~~~~~~~~~g~~~~~~a~~~~--~~d~~lv~~~D~P~i~~~~i~~l~~~~~ 115 (238)
T PRK13368 38 AQAAGVEEVYVATDDQRIEDAVEAFGGKVVMTSDDHLSGTDRLAEVMLKI--EADIYINVQGDEPMIRPRDIDTLIQPML 115 (238)
T ss_pred HhcCCCCeEEEECChHHHHHHHHHcCCeEEecCccCCCccHHHHHHHHhC--CCCEEEEEcCCcCcCCHHHHHHHHHHHH
Confidence 34457999999999999999998899988767666667888888888876 4689999999999999999999999986
Q ss_pred cCCCceEEeecccCCC-CccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCC--eeEEeeeeeechHHHhhCcCC
Q 027992 85 AAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKIYPGL 161 (215)
Q Consensus 85 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p--~~~~~~~~~~~~~~l~~~~~~ 161 (215)
++..+.+++...+... ...+||...++..+++|.+..|.+.+.+ .++|+.+ +..+.+.|+|+.+.+..+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~~~~-----~~~~~~~~~~~~n~giy~~~~~~l~~~~~~ 190 (238)
T PRK13368 116 DDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSPIP-----SRRDGESARYLKHVGIYAFRRDVLQQFSQL 190 (238)
T ss_pred HCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCCCCC-----CCCCCCCCceeEEEEEEEeCHHHHHHHHcC
Confidence 4333222221222210 0112344433333556776555432112 2466654 355777899998887765432
Q ss_pred CCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHH
Q 027992 162 HPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 209 (215)
Q Consensus 162 ~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il 209 (215)
....++..+..+..+++..|.++..+..+..++|||||+||..||.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~~ 238 (238)
T PRK13368 191 PETPLEQIESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLERVRAIM 238 (238)
T ss_pred CCChhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHhC
Confidence 211111122223334555688898888778899999999999999874
No 7
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.83 E-value=2.4e-19 Score=142.52 Aligned_cols=175 Identities=27% Similarity=0.356 Sum_probs=118.4
Q ss_pred ccccCCCCcEEEEcCcHHHHHHHHHcCCe-EEeCCCCCCCc----hHHHHHHHHHhcC---CCCEEEEecCCCCCCCHHH
Q 027992 4 MCHSFLFCGLVVATDDEKIAECCQQFGAD-VIMTSESCRNG----TERCNEALQKLEK---KYDIVVNIQGDEPLIEPEI 75 (215)
Q Consensus 4 a~~~~~~d~ivV~td~~~i~~~~~~~g~~-v~~~~~~~~~~----~~~i~~~l~~~~~---~~d~v~~~~~d~Pli~~~~ 75 (215)
+++++.+++|+|+|+++++.+.+.++|+. ++.+++++++| ..++.++++.+.. ..|.+++++||+||+++++
T Consensus 36 l~~~~~~~~IvV~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~ 115 (223)
T cd02513 36 ALESKLFDRVVVSTDDEEIAEVARKYGAEVPFLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAED 115 (223)
T ss_pred HHhCCCCCEEEEECCcHHHHHHHHHhCCCceeeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHH
Confidence 44566789999999999999888888873 45676665543 3467888877642 3689999999999999999
Q ss_pred HHHHHHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCc-eecccCCCCCCCCCCCCCCCCCeeEEeee--eeec
Q 027992 76 IDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY-AIYFSRGLIPYNKSGKVNPQFPYLLHLGI--QSYD 151 (215)
Q Consensus 76 i~~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~ip~~~~~~~~q~~p~~~~~~~--~~~~ 151 (215)
|+++++.+.. +.++++++. +.+. +|.... ..+++|. ...+ ..+...++|++|..+..++ |+++
T Consensus 116 i~~~i~~~~~~~~~~~~~~~--~~~~----~~~~~~-~~~~~~~~~~~~------~~~~~~~~q~~~~~~~~n~~~y~~~ 182 (223)
T cd02513 116 IDEAIELLLSEGADSVFSVT--EFHR----FPWRAL-GLDDNGLEPVNY------PEDKRTRRQDLPPAYHENGAIYIAK 182 (223)
T ss_pred HHHHHHHHHhCCCCEEEEEE--ecCc----CcHHhe-eeccCCceeccC------cccccCCcCCChhHeeECCEEEEEE
Confidence 9999999964 457777753 3321 112111 1223331 2211 1223357899997776666 5556
Q ss_pred hHHHhhCcCCCCCCCCCccchhhhhhhhcCCeeEEEEe-cCCCCCCCCHHHHHHHHHHH
Q 027992 152 SNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDAPEDVEKIESFM 209 (215)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~-~~~~idIdt~~Dl~~ae~il 209 (215)
.+.+.+...+ .|.++..+++ +.+++||||++||++||.++
T Consensus 183 ~~~~~~~~~~------------------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~~ 223 (223)
T cd02513 183 REALLESNSF------------------FGGKTGPYEMPRERSIDIDTEEDFELAEALL 223 (223)
T ss_pred HHHHHhcCCc------------------cCCCeEEEEeCccceeCCCCHHHHHHHHHhC
Confidence 6655432211 4677766665 57999999999999999874
No 8
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.79 E-value=2.7e-18 Score=135.89 Aligned_cols=178 Identities=20% Similarity=0.311 Sum_probs=115.2
Q ss_pred cccCCCCcEEEEcCcHH---HHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 5 CHSFLFCGLVVATDDEK---IAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 5 ~~~~~~d~ivV~td~~~---i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
.+++.+++|+|++..++ +++++.+..+.++. ... +-..++++||..+....|+|++|+|.+||++++.|+++++
T Consensus 39 ~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~v~iv~-GG~--tR~~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~ 115 (221)
T PF01128_consen 39 LASPEIDEIVVVVPPEDIDYVEELLSKKKVKIVE-GGA--TRQESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIE 115 (221)
T ss_dssp HTTTTESEEEEEESGGGHHHHHHHHHHTTEEEEE---S--SHHHHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHH
T ss_pred hcCCCCCeEEEEecchhHHHHHHhhcCCCEEEec-CCh--hHHHHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHH
Confidence 35688999999996654 44555553333332 111 2345789999998766699999999999999999999999
Q ss_pred HHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-CcC
Q 027992 82 ALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPG 160 (215)
Q Consensus 82 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~~ 160 (215)
.++++.+++++. .|.. +|++.+ +.+|.+. +. .+|+. .+..+++|+|+.+.|.+ |..
T Consensus 116 ~~~~~~~aai~~--~p~~-------DTik~v-~~~~~v~---~t---ldR~~-------l~~~QTPQ~F~~~~l~~a~~~ 172 (221)
T PF01128_consen 116 AAREGHGAAIPA--LPVT-------DTIKRV-DDDGFVT---ET---LDRSK-------LWAVQTPQAFRFELLLEAYEK 172 (221)
T ss_dssp HHHHTCSEEEEE--EE-S-------SEEEEE-STTSBEE---EE---ETGGG-------EEEEEEEEEEEHHHHHHHHHT
T ss_pred HHHhhcCcEEEE--Eecc-------ccEEEE-ecCCccc---cc---CCHHH-------eeeecCCCeecHHHHHHHHHH
Confidence 998745777774 4554 898876 4566543 11 13332 56678899999877654 332
Q ss_pred CCCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992 161 LHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 161 ~~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~ 211 (215)
... +.....+...+++ .|.++.+++++..|++||||+||.+||++|++
T Consensus 173 a~~---~~~~~tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll~~ 221 (221)
T PF01128_consen 173 ADE---EGFEFTDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALLKQ 221 (221)
T ss_dssp HHH---HTHHHSSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHHHH
T ss_pred HHh---cCCCccCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHhcC
Confidence 100 0011234444444 79999999999999999999999999999974
No 9
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.77 E-value=1.8e-16 Score=127.87 Aligned_cols=199 Identities=45% Similarity=0.746 Sum_probs=133.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHHHHcC-
Q 027992 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA- 86 (215)
Q Consensus 9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~- 86 (215)
.+++|+|+|+.+++.+.+.++|+.++..+....+|++++..++..+. .+.|.++++.||+||+++++++++++.++.+
T Consensus 41 ~i~~ivvv~~~~~i~~~~~~~~~~v~~~~~~~~~gt~~~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~ 120 (245)
T PRK05450 41 GADRVVVATDDERIADAVEAFGGEVVMTSPDHPSGTDRIAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPE 120 (245)
T ss_pred CCCeEEEECCcHHHHHHHHHcCCEEEECCCcCCCchHHHHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCC
Confidence 78999999999999888888898876554455567777766666552 2468899999999999999999999988653
Q ss_pred CCceEEeecccC-CCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCC-CCCeeEEeeeeeechHHHhhCcCCCCC
Q 027992 87 PDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP-QFPYLLHLGIQSYDSNFLKIYPGLHPT 164 (215)
Q Consensus 87 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q-~~p~~~~~~~~~~~~~~l~~~~~~~~~ 164 (215)
.+..+. +.+. ......+|...+++.+++|.+..|.+.++|...+....| ......+.|.|+|....+..+.....+
T Consensus 121 ~~~~~~--~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~ 198 (245)
T PRK05450 121 ADMATL--AVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPS 198 (245)
T ss_pred CCeEee--eeecCCHHHhcCcCCCEEEeCCCCcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCC
Confidence 233322 2222 111123556667767788888878776655332211112 123567888999988776655433222
Q ss_pred CCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHH
Q 027992 165 PLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFM 209 (215)
Q Consensus 165 ~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il 209 (215)
..+..+.+...++++.|.+++.+..+ ...+|||||+|+..|+..+
T Consensus 199 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 199 PLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred ccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 22112222222455578899998876 5889999999999998775
No 10
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.77 E-value=9.9e-18 Score=134.21 Aligned_cols=179 Identities=16% Similarity=0.252 Sum_probs=117.3
Q ss_pred ccccCCCCcEEEEcCcHHHH---HHHHHcCCe---E-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992 4 MCHSFLFCGLVVATDDEKIA---ECCQQFGAD---V-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 4 a~~~~~~d~ivV~td~~~i~---~~~~~~g~~---v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i 76 (215)
++++..++.|+|+++++++. +.+.++|.. + +..... +...++++|+..+. +.|.+++|+||+||+++++|
T Consensus 40 ~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~--~r~~sv~~gl~~~~-~~d~vli~~~d~P~i~~~~i 116 (230)
T PRK13385 40 FLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVKGGT--ERQESVAAGLDRIG-NEDVILVHDGARPFLTQDII 116 (230)
T ss_pred HHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCCCceEEcCCCc--hHHHHHHHHHHhcc-CCCeEEEccCCCCCCCHHHH
Confidence 34566799999999876644 455666642 1 111111 23457899998874 45899999999999999999
Q ss_pred HHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHh
Q 027992 77 DGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK 156 (215)
Q Consensus 77 ~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~ 156 (215)
+++++.+.++ ++.+++ .++. ++++.+ + +|... ..+ +|+. .+..+++|+|+...|.
T Consensus 117 ~~li~~~~~~-~~~~~~--~~~~-------dti~~~-~-~~~~~----~~i--~r~~-------~~~~qtpq~f~~~~l~ 171 (230)
T PRK13385 117 DRLLEGVAKY-GAAICA--VEVK-------DTVKRV-K-DKQVI----ETV--DRNE-------LWQGQTPQAFELKILQ 171 (230)
T ss_pred HHHHHHHhhC-CcEEEE--Eecc-------ceEEEE-c-CCeeE----ecc--CHHH-------HhhhcCCceeeHHHHH
Confidence 9999998754 555553 3443 677765 2 34321 122 2332 3344556888887776
Q ss_pred hCcCCCCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992 157 IYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 157 ~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~ 211 (215)
++........+.... +...+.+.|.++.+++++..+++|||++||++||.+++.
T Consensus 172 ~~~~~~~~~~~~~td-~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~ 225 (230)
T PRK13385 172 KAHRLASEQQFLGTD-EASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQG 225 (230)
T ss_pred HHHHHHHhcCCCcCc-HHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhh
Confidence 543221111111111 334455589999999999999999999999999999865
No 11
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=99.74 E-value=6.6e-18 Score=133.83 Aligned_cols=128 Identities=35% Similarity=0.564 Sum_probs=92.1
Q ss_pred ccccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHHHH
Q 027992 2 LVMCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 2 ~~a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
.+|++++.+|+|||+||+++|.++++++|+.++.|++++++++++...++..... ..++++.++||+||++++.|++++
T Consensus 32 ~~a~~s~~~d~IvVaTd~~~i~~~~~~~g~~v~~~~~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i 111 (217)
T PF02348_consen 32 ERAKQSKLIDEIVVATDDEEIDDIAEEYGAKVIFRRGSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAI 111 (217)
T ss_dssp HHHHHTTTTSEEEEEESSHHHHHHHHHTTSEEEE--TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHH
T ss_pred HHHHhCCCCCeEEEeCCCHHHHHHHHHcCCeeEEcChhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHH
Confidence 3578999999999999999999999999999988888999999998888887632 345999999999999999999999
Q ss_pred HHHHcC-CCceEEeecccCC-CCccCCCCceEEEEcCCCceecccCCCCCCC
Q 027992 81 KALQAA-PDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN 130 (215)
Q Consensus 81 ~~~~~~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~ 130 (215)
+.+.+. .+..... ..+.. ....++++.++.+.+.++...++.+..+|+.
T Consensus 112 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (217)
T PF02348_consen 112 EDIREANEDYISNL-VDPVGSSVEIFNFNPLKVLFDDDGLELYFSEHVIPYI 162 (217)
T ss_dssp HHHHHSTTSSEEEE-EEEECSHHHHTSTTSTEEEECTTSBEEEEESSESSEC
T ss_pred HHHhcCchhhhccc-cccccchhhcccccceEEEeccccchhhcccCCCccc
Confidence 999753 3322222 12221 1122344566666666666666666655543
No 12
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.74 E-value=7e-17 Score=130.64 Aligned_cols=180 Identities=14% Similarity=0.187 Sum_probs=120.6
Q ss_pred ccCCCCcEEEEcCcHH---HHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 6 HSFLFCGLVVATDDEK---IAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~---i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
+...+++|+|++..+. +....+.++..+.... .-.+-..+++.|+..+..+.++|++|++++||++++.|+++++.
T Consensus 64 ~~~~i~~IvVV~~~~~~~~~~~~~~~~~~~i~~v~-gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~ 142 (252)
T PLN02728 64 RMPEVKEIVVVCDPSYRDVFEEAVENIDVPLKFAL-PGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKD 142 (252)
T ss_pred hCCCCCeEEEEeCHHHHHHHHHHHHhcCCceEEcC-CCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHH
Confidence 3457899999997543 2344455665442221 11123457899999886567899999999999999999999998
Q ss_pred HHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-CcCC
Q 027992 83 LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGL 161 (215)
Q Consensus 83 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~~~ 161 (215)
...+ ++++.. .+.. +++|.+ +.+|.+. .. + +|+. .+..+++|+|+...|.+ +...
T Consensus 143 ~~~~-ga~i~~--~~~~-------dtik~v-~~~~~v~---~t--~-~R~~-------l~~~QTPQ~F~~~~l~~a~~~~ 198 (252)
T PLN02728 143 AAVH-GAAVLG--VPVK-------ATIKEA-NSDSFVV---KT--L-DRKR-------LWEMQTPQVIKPELLRRGFELV 198 (252)
T ss_pred HhhC-CeEEEe--ecch-------hhEEEe-cCCCcee---ec--c-ChHH-------eEEEeCCccchHHHHHHHHHHH
Confidence 8764 566553 4554 788876 4455432 11 1 3433 34566779998877654 3222
Q ss_pred CCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhhc
Q 027992 162 HPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN 213 (215)
Q Consensus 162 ~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~~ 213 (215)
.... ....+...+++ .|.+|.+++++..|++||||+||.+||.+++.++
T Consensus 199 ~~~~---~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~~~ 248 (252)
T PLN02728 199 EREG---LEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNERS 248 (252)
T ss_pred HhcC---CCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhhcc
Confidence 1111 01124444444 7999999999999999999999999999998754
No 13
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.73 E-value=3.9e-17 Score=129.01 Aligned_cols=177 Identities=20% Similarity=0.248 Sum_probs=118.5
Q ss_pred cccCCCCcEEEEcCcHHHH---HHHH-HcCCeEEeCCCCCCCchH---HHHHHHHHhcC-CCCEEEEecCCCCCCCHHHH
Q 027992 5 CHSFLFCGLVVATDDEKIA---ECCQ-QFGADVIMTSESCRNGTE---RCNEALQKLEK-KYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 5 ~~~~~~d~ivV~td~~~i~---~~~~-~~g~~v~~~~~~~~~~~~---~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i 76 (215)
+.++.|++|||++..++.. +..+ ..+-.+ . -..||.+ ++++||..++. +.++|++|++.+||++++.|
T Consensus 43 ~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~v-~---~v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i 118 (230)
T COG1211 43 LESPAIDEIVVVVSPEDDPYFEKLPKLSADKRV-E---VVKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLI 118 (230)
T ss_pred HhCcCCCeEEEEEChhhhHHHHHhhhhccCCeE-E---EecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHH
Confidence 4567799999999764443 3332 111122 1 1125544 68999999853 68999999999999999999
Q ss_pred HHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHh
Q 027992 77 DGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK 156 (215)
Q Consensus 77 ~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~ 156 (215)
+++++.. ..+++.+.+ .|+. +|+|.. +++|.+.. . .+|+..+..++ +|+|+.+.|.
T Consensus 119 ~~li~~~-~~~~aai~a--lpv~-------DTik~~-~~~~~i~~-----t-~~R~~l~~~QT-------PQ~F~~~~L~ 174 (230)
T COG1211 119 KRLIELA-DKYGAAILA--LPVT-------DTLKRV-DADGNIVE-----T-VDRSGLWAAQT-------PQAFRLELLK 174 (230)
T ss_pred HHHHHhh-ccCCcEEEE--eecc-------CcEEEe-cCCCCeee-----c-cChhhhhhhhC-------CccccHHHHH
Confidence 9999444 345666664 4665 898876 44555431 1 24544444444 4888877665
Q ss_pred hCcCCCCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992 157 IYPGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 157 ~~~~~~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~ 211 (215)
+....- ..+..+.++....++ .|.++.+++++..|++|+||+||++|+.+|+.
T Consensus 175 ~a~~~a--~~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 175 QALARA--FAEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR 228 (230)
T ss_pred HHHHHH--HhcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence 532110 001123345556555 79999999999999999999999999999875
No 14
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.72 E-value=1.9e-15 Score=121.43 Aligned_cols=201 Identities=49% Similarity=0.836 Sum_probs=126.5
Q ss_pred ccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 6 HSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
++..+++|+|+|+++.+.+.+..+++.++..+....+|+.++..++..+....|.++++.||+||+++++|+++++.+..
T Consensus 38 ~~~~i~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~ 117 (239)
T cd02517 38 KAKGLDEVVVATDDERIADAVESFGGKVVMTSPDHPSGTDRIAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKD 117 (239)
T ss_pred hCCCCCEEEEECCcHHHHHHHHHcCCEEEEcCcccCchhHHHHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 34479999999999999888888888876555444467777777777664335889999999999999999999998864
Q ss_pred CCCceEEeecccCCCCc-cCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCC
Q 027992 86 APDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT 164 (215)
Q Consensus 86 ~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~ 164 (215)
+.++..++...+..... ...+..++++.+++|.+..|.+.++|..++. ++......+.+.|+|..+.+..+......
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~Giy~~~~~~~~~~~~~~~~ 195 (239)
T cd02517 118 DPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPIPYPRDS--SEDFPYYKHIGIYAYRRDFLLRFAALPPS 195 (239)
T ss_pred CCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCCCCCCCCCC--CCCCceeEEEEEEEECHHHHHHHHhCCCc
Confidence 32333332223331000 0022344555566777666654333322210 12223456788899988776654332111
Q ss_pred CCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHH
Q 027992 165 PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESF 208 (215)
Q Consensus 165 ~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~i 208 (215)
.++..+.++...++..|.++..+..+...+||+|++|+..||++
T Consensus 196 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~~ 239 (239)
T cd02517 196 PLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEAL 239 (239)
T ss_pred hhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHhC
Confidence 11111111212334468888888765569999999999999864
No 15
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.63 E-value=7.2e-15 Score=117.35 Aligned_cols=178 Identities=16% Similarity=0.254 Sum_probs=112.7
Q ss_pred cccCCCCcEEEEcCcHHHHHHHHHcCC---eE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 5 CHSFLFCGLVVATDDEKIAECCQQFGA---DV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 5 ~~~~~~d~ivV~td~~~i~~~~~~~g~---~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
++++.+++|+|+|+++.+..+++.+.. .+ +..... +-..+++.|+..+. +.|.+++++||+||+++++|++++
T Consensus 42 ~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~sv~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li 118 (227)
T PRK00155 42 LAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVVAGGA--ERQDSVLNGLQALP-DDDWVLVHDAARPFLTPDDIDRLI 118 (227)
T ss_pred HcCCCCCEEEEEeChHHHHHHHHHhhccCCceEEeCCcc--hHHHHHHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHH
Confidence 345668999999988776555443321 12 111111 22346888888773 468999999999999999999999
Q ss_pred HHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcC
Q 027992 81 KALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG 160 (215)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~ 160 (215)
+.+..+ ++++.+ .+.. ++++.+ +++|... +. + .|+ + .....++|+|+...+.++..
T Consensus 119 ~~~~~~-~~~~~~--~~~~-------~~~~~v-~~~g~~~---~~--~-~r~-----~--~~~~~~p~~f~~~~l~~~~~ 174 (227)
T PRK00155 119 EAAEET-GAAILA--VPVK-------DTIKRS-DDGGGIV---DT--P-DRS-----G--LWAAQTPQGFRIELLREALA 174 (227)
T ss_pred HHHhhC-CCEEEE--Eecc-------ccEEEE-cCCCcee---ec--C-ChH-----H--heeeeCCccchHHHHHHHHH
Confidence 998764 554443 3432 344444 4455422 21 2 221 1 34556688998877765432
Q ss_pred CCCCCCCCccc-hhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992 161 LHPTPLQLEED-LEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 161 ~~~~~~~~~e~-l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~ 212 (215)
.... ...+ ++...+++ .|.++.+++++.+++||||++||++||.+++.+
T Consensus 175 ~~~~---~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~~ 225 (227)
T PRK00155 175 RALA---EGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKRR 225 (227)
T ss_pred HHHh---cCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHhc
Confidence 1100 0111 22233333 688898888888899999999999999999754
No 16
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.63 E-value=1.4e-14 Score=114.88 Aligned_cols=174 Identities=17% Similarity=0.252 Sum_probs=109.3
Q ss_pred ccCCCCcEEEEcCcHHHHHHHHHcCC--eE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 6 HSFLFCGLVVATDDEKIAECCQQFGA--DV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~i~~~~~~~g~--~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
+++.+++|+|+++++....+...++. .+ +..... +-..+++.|+..+ .+.|.+++++||+||+++++|+++++.
T Consensus 39 ~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~sl~~~l~~~-~~~d~vlv~~~D~P~i~~~~i~~li~~ 115 (217)
T TIGR00453 39 AHPAIDEVVVVVSPEDQEFFQKYLVARAVPKIVAGGD--TRQDSVRNGLKAL-KDAEWVLVHDAARPFVPKELLDRLLEA 115 (217)
T ss_pred cCCCCCEEEEEEChHHHHHHHHHhhcCCcEEEeCCCc--hHHHHHHHHHHhC-CCCCEEEEccCccCCCCHHHHHHHHHH
Confidence 34478999999987755444333321 11 222111 2235688888876 256899999999999999999999999
Q ss_pred HHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCC-
Q 027992 83 LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL- 161 (215)
Q Consensus 83 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~- 161 (215)
+..+ ++++.+ .+.. ++++.+ +++|.... +. .|+ ....+.++|+|+...+.++...
T Consensus 116 ~~~~-~~~~~~--~~~~-------~~v~~~-~~~g~~~~-----~~-~r~-------~~~~~~~p~~f~~~~l~~~~~~~ 171 (217)
T TIGR00453 116 LRKA-GAAILA--LPVA-------DTLKRV-EADGFIVE-----TV-DRE-------GLWAAQTPQAFRTELLKKALARA 171 (217)
T ss_pred HhhC-CcEEEe--Eecc-------ceEEEE-cCCCceee-----cC-ChH-------HeEEEeCCCcccHHHHHHHHHHH
Confidence 8653 443332 3432 555544 34553321 11 111 1455677899998877664321
Q ss_pred CCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHH
Q 027992 162 HPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFM 209 (215)
Q Consensus 162 ~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il 209 (215)
....++.. +...++. .|.++.+++++..+++|||++|+..||+++
T Consensus 172 ~~~~~~~~---d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~~ 217 (217)
T TIGR00453 172 KEEGFEIT---DDASAVEKLGGKVALVEGDALNFKITTPEDLALAEALL 217 (217)
T ss_pred HhcCCCCC---cHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHhC
Confidence 11111112 2222222 688999999888999999999999999874
No 17
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.44 E-value=2.4e-12 Score=101.95 Aligned_cols=171 Identities=19% Similarity=0.310 Sum_probs=103.3
Q ss_pred ccCCCCcEEEEcCcHHHHHHHH--HcC--CeE-EeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHH
Q 027992 6 HSFLFCGLVVATDDEKIAECCQ--QFG--ADV-IMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGV 79 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~i~~~~~--~~g--~~v-~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~ 79 (215)
+++.+++|+|+|.++....... .++ ..+ +..... +...+++.|+..+. .+.|.+++++||+||+++++|+++
T Consensus 40 ~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~l 117 (218)
T cd02516 40 AHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKIVEGGA--TRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRL 117 (218)
T ss_pred cCCCCCEEEEEeChhHHHHHHHHHhcccCCCeEEECCch--HHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHH
Confidence 3455899999997765443322 222 122 223222 33457899998874 357899999999999999999999
Q ss_pred HHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCc
Q 027992 80 VKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP 159 (215)
Q Consensus 80 i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~ 159 (215)
++.+..+ ++.+.+ .+.. ++++.. +++|.... .+ .|+. .....++++|+...+.+..
T Consensus 118 i~~~~~~-~~~~~~--~~~~-------~~~~~~-~~~g~~~~----~~--~r~~-------~~~~~~P~~f~~~~~~~~~ 173 (218)
T cd02516 118 IDALKEY-GAAIPA--VPVT-------DTIKRV-DDDGVVVE----TL--DREK-------LWAAQTPQAFRLDLLLKAH 173 (218)
T ss_pred HHHHhhC-CcEEEE--Eecc-------ccEEEe-cCCCceee----cC--ChHH-------hhhhcCCCcccHHHHHHHH
Confidence 9998653 554553 2332 343333 45565431 11 2211 2234555888776665432
Q ss_pred CCCCCCCCCccch-hhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHH
Q 027992 160 GLHPTPLQLEEDL-EQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKI 205 (215)
Q Consensus 160 ~~~~~~~~~~e~l-~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~a 205 (215)
.+... ..-++ +...++. .|.++.+++++.+++||||++|++.|
T Consensus 174 ~~~~~---~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~~ 218 (218)
T cd02516 174 RQASE---EGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLALA 218 (218)
T ss_pred HHHHh---cCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhhC
Confidence 11100 01112 2233433 67889998888899999999999764
No 18
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.42 E-value=1e-11 Score=105.91 Aligned_cols=166 Identities=20% Similarity=0.268 Sum_probs=105.0
Q ss_pred ccCCCCcEEEEcCcHHHHHHHHHc-CCe-E-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 6 HSFLFCGLVVATDDEKIAECCQQF-GAD-V-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~i~~~~~~~-g~~-v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
++..+++|+|++.++......... +.. + +..... +-..++++|++.+. .|+|+++++|+||++++.|+++++.
T Consensus 45 ~~~~i~~IvVVv~~~~~~~~~~~~~~~~~v~~v~gG~--~r~~SV~~gL~~l~--~d~VLVhdadrPfv~~e~I~~li~~ 120 (378)
T PRK09382 45 SAPAFKEIVVVIHPDDIAYMKKALPEIKFVTLVTGGA--TRQESVRNALEALD--SEYVLIHDAARPFVPKELIDRLIEA 120 (378)
T ss_pred cCCCCCeEEEEeChHHHHHHHHhcccCCeEEEeCCCc--hHHHHHHHHHHhcC--CCeEEEeeccccCCCHHHHHHHHHH
Confidence 445689999999765543221111 111 1 111111 22346899999883 4899999999999999999999998
Q ss_pred HHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCC
Q 027992 83 LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLH 162 (215)
Q Consensus 83 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~ 162 (215)
++.. ++++.+ .+.. ++++... . . .+|+. .+..+++|.|+...+.+...
T Consensus 121 ~~~~-~a~i~~--~pv~-------Dtik~~~----~-------t--ldR~~-------l~~~QTPQ~f~~~~l~~a~~-- 168 (378)
T PRK09382 121 LDKA-DCVLPA--LPVA-------DTLKRAN----E-------T--VDREG-------LKLIQTPQLSRTKTLKAAAD-- 168 (378)
T ss_pred hhcC-CeEEEE--EEec-------cCcEEee----e-------E--cCccc-------EEEEECCCCCCHHHHHHHHh--
Confidence 8653 666664 3443 5655421 0 0 12221 23346678887765543110
Q ss_pred CCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992 163 PTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 163 ~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~ 211 (215)
.. .+..+....++ .|.+|.+++++..++||+||+||.+|+++++.
T Consensus 169 -~~---~~~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 169 -GR---GDFTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred -CC---CCcccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 00 11123344443 79999999999999999999999999999865
No 19
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=3.4e-10 Score=95.54 Aligned_cols=192 Identities=25% Similarity=0.328 Sum_probs=128.4
Q ss_pred cCCCCcEEEEc--CcHHHHHHHHHcC-CeEEeCCCCCCCchH-HHHHHHHHhcCCCC-EEEEecCCCCCCCHHHHHHHHH
Q 027992 7 SFLFCGLVVAT--DDEKIAECCQQFG-ADVIMTSESCRNGTE-RCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 7 ~~~~d~ivV~t--d~~~i~~~~~~~g-~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d-~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
+-..++|+|+. ..+.+++.+.+.. +.++...+. -|+. .+..|+..+..+.+ .++++.||.||+++++|+++++
T Consensus 42 ~l~~~~i~vVvGh~ae~V~~~~~~~~~v~~v~Q~eq--lGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~ 119 (460)
T COG1207 42 ALGPDDIVVVVGHGAEQVREALAERDDVEFVLQEEQ--LGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLA 119 (460)
T ss_pred hcCcceEEEEEcCCHHHHHHHhccccCceEEEeccc--CChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHH
Confidence 34567777666 4577777766543 666666655 4555 46777777744444 7999999999999999998888
Q ss_pred HHHcCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-c
Q 027992 82 ALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-P 159 (215)
Q Consensus 82 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~ 159 (215)
..... .+.++++...+ .+|... +++++++|.+.- |.+.++....|..-...+.+.|+|..+.|.++ .
T Consensus 120 ~~~~~-~~~~tvLt~~~-----~dP~GYGRIvr~~~g~V~~-----IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~ 188 (460)
T COG1207 120 AHPAH-GAAATVLTAEL-----DDPTGYGRIVRDGNGEVTA-----IVEEKDASEEEKQIKEINTGIYAFDGAALLRALP 188 (460)
T ss_pred hhhhc-CCceEEEEEEc-----CCCCCcceEEEcCCCcEEE-----EEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHH
Confidence 87532 33344443444 355554 667777776542 22344432233333577888999988766654 3
Q ss_pred CCCCCCCCCccc-hh-hhhhhh-cCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHhh
Q 027992 160 GLHPTPLQLEED-LE-QLKVLE-NGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 160 ~~~~~~~~~~e~-l~-~~~~~~-~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~~ 212 (215)
.+. +..++.|| |. -..++. .|.++..+..+ .+...|++.-.|..||+++++|
T Consensus 189 ~l~-nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r 245 (460)
T COG1207 189 KLS-NNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRR 245 (460)
T ss_pred Hhc-cccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHH
Confidence 443 33466776 64 444443 68899988864 6999999999999999999875
No 20
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.24 E-value=9.2e-11 Score=90.22 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=60.5
Q ss_pred cCCCCcEEEEcCcHHHH---HHHHHcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 7 SFLFCGLVVATDDEKIA---ECCQQFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 7 ~~~~d~ivV~td~~~i~---~~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
+..+++|||+|-.+... ......++.++.++ +++.|++ |++.|+.+...+.|+++++.||+|++++++++++++.
T Consensus 43 ~a~~~~vivV~g~~~~~~~~a~~~~~~~~~v~np-d~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~ 121 (199)
T COG2068 43 SAGLDRVIVVTGHRVAEAVEALLAQLGVTVVVNP-DYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAA 121 (199)
T ss_pred hcCCCeEEEEeCcchhhHHHhhhccCCeEEEeCc-chhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHh
Confidence 36689999999764222 33333566666555 7777876 7899999885444799999999999999999999999
Q ss_pred HHcC
Q 027992 83 LQAA 86 (215)
Q Consensus 83 ~~~~ 86 (215)
+...
T Consensus 122 ~~~~ 125 (199)
T COG2068 122 FRAR 125 (199)
T ss_pred cccc
Confidence 9764
No 21
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=99.19 E-value=5.7e-10 Score=86.99 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=61.9
Q ss_pred CCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCc
Q 027992 10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 89 (215)
Q Consensus 10 ~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~ 89 (215)
+++|+|+++++++.+.+..+|+.++.++.. |-.+++.+|++++..+.+.++++.+|+||+++++|+++++.+.. .+.
T Consensus 45 ~~~vvvv~~~~~~~~~~~~~~v~~i~~~~~--G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~-~~~ 121 (195)
T TIGR03552 45 AGAVLVVSPDPALLEAARNLGAPVLRDPGP--GLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE-GDV 121 (195)
T ss_pred CCCEEEECCCHHHHHHHHhcCCEEEecCCC--CHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc-CCE
Confidence 578999999888888888889888765432 33457899988775456799999999999999999999998753 344
Q ss_pred eE
Q 027992 90 VF 91 (215)
Q Consensus 90 ~i 91 (215)
++
T Consensus 122 vi 123 (195)
T TIGR03552 122 VI 123 (195)
T ss_pred EE
Confidence 33
No 22
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.13 E-value=3.6e-09 Score=84.77 Aligned_cols=77 Identities=34% Similarity=0.503 Sum_probs=57.4
Q ss_pred cccCCCCcEEEEcCc----HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 5 CHSFLFCGLVVATDD----EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 5 ~~~~~~d~ivV~td~----~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
+++..+++|+|+|+. +.+.+.+...|+.++.++.. ++..+...++.. .+.|.+++++||+||+++++|++++
T Consensus 35 ~~~~~~~~ivVv~~~~~~~~~i~~~~~~~~v~~v~~~~~--~~l~~~~~~~~~--~~~d~vli~~~D~P~i~~~~i~~li 110 (233)
T cd02518 35 KRSKLIDEIVIATSTNEEDDPLEALAKKLGVKVFRGSEE--DVLGRYYQAAEE--YNADVVVRITGDCPLIDPEIIDAVI 110 (233)
T ss_pred HhCCCCCeEEEECCCCcccHHHHHHHHHcCCeEEECCch--hHHHHHHHHHHH--cCCCEEEEeCCCCCCCCHHHHHHHH
Confidence 344558999999964 46777777788888766643 344444444433 2578999999999999999999999
Q ss_pred HHHHc
Q 027992 81 KALQA 85 (215)
Q Consensus 81 ~~~~~ 85 (215)
+.+..
T Consensus 111 ~~~~~ 115 (233)
T cd02518 111 RLFLK 115 (233)
T ss_pred HHHHh
Confidence 98865
No 23
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=5.6e-10 Score=86.60 Aligned_cols=84 Identities=30% Similarity=0.461 Sum_probs=67.5
Q ss_pred ccccCCCCcEEEEcC----cHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992 4 MCHSFLFCGLVVATD----DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 79 (215)
Q Consensus 4 a~~~~~~d~ivV~td----~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~ 79 (215)
.++++.+|+|||+|. +..+.+.+.++|+.|+..+++ .-..|+..++++. +.|.|+.+.||+||++|+.++.+
T Consensus 38 vrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~vfrGs~~--dVL~Rf~~a~~a~--~~~~VVRvTGD~P~~dp~l~d~~ 113 (241)
T COG1861 38 VRKSKDLDKIVVATSDKEEDDALEEVCRSHGFYVFRGSEE--DVLQRFIIAIKAY--SADVVVRVTGDNPFLDPELVDAA 113 (241)
T ss_pred HhccccccceEEEecCCcchhHHHHHHHHcCeeEecCCHH--HHHHHHHHHHHhc--CCCeEEEeeCCCCCCCHHHHHHH
Confidence 457888999999994 355778899999999876544 4556888888887 56799999999999999999999
Q ss_pred HHHHHcCCCceEE
Q 027992 80 VKALQAAPDAVFS 92 (215)
Q Consensus 80 i~~~~~~~~~~i~ 92 (215)
+..+.+. ++.++
T Consensus 114 v~~~l~~-gaDY~ 125 (241)
T COG1861 114 VDRHLEK-GADYV 125 (241)
T ss_pred HHHHHhc-CCccc
Confidence 9998642 34444
No 24
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.05 E-value=1.5e-08 Score=88.86 Aligned_cols=195 Identities=18% Similarity=0.244 Sum_probs=111.1
Q ss_pred cccCCCCcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHHHH
Q 027992 5 CHSFLFCGLVVATD--DEKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 5 ~~~~~~d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
++...+++|+|++. .+.+.+.....++.++..+.. .|+ .+++.++..+.. ..|.++++.||+||+++++++.++
T Consensus 43 l~~~~~~~iivv~~~~~~~i~~~~~~~~~~~v~~~~~--~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li 120 (456)
T PRK14356 43 LRPLFGDNVWTVVGHRADMVRAAFPDEDARFVLQEQQ--LGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFL 120 (456)
T ss_pred HHhcCCCcEEEEECCCHHHHHHhccccCceEEEcCCC--CCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHH
Confidence 34445788888874 366666555556666554432 343 367777777642 358899999999999999999999
Q ss_pred HHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-c
Q 027992 81 KALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-P 159 (215)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~ 159 (215)
+.++ +.+..+.. .+.. +|....++..++|.+.-+.+.. ..+.............+.|.|+.+.+..+ .
T Consensus 121 ~~~~-~~~~~l~~--~~~~-----~~~~~g~v~~~~g~V~~~~ek~---~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~ 189 (456)
T PRK14356 121 KEAA-GADLAFMT--LTLP-----DPGAYGRVVRRNGHVAAIVEAK---DYDEALHGPETGEVNAGIYYLRLDAVESLLP 189 (456)
T ss_pred HHHh-cCCEEEEE--EEcC-----CCCCceEEEEcCCeEEEEEECC---CCChHHhhhhcCeEEEEEEEEEHHHHHHHHH
Confidence 8865 33433332 2321 2233322323566654332111 00000001112355678899988765432 2
Q ss_pred CCCCCCCCCccchh-hhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHhh
Q 027992 160 GLHPTPLQLEEDLE-QLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 160 ~~~~~~~~~~e~l~-~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~~ 212 (215)
.+.........++. ... ++..|.++..+... ...++|+|++||..|+.++..+
T Consensus 190 ~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~ 246 (456)
T PRK14356 190 RLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRAR 246 (456)
T ss_pred hccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHH
Confidence 22111101111222 222 23367888888753 4679999999999999998653
No 25
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.02 E-value=2.7e-08 Score=79.14 Aligned_cols=181 Identities=21% Similarity=0.315 Sum_probs=106.2
Q ss_pred CCCCcEEEEc--CcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 8 FLFCGLVVAT--DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 8 ~~~d~ivV~t--d~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
..+++|+|++ +.+.+.+.+..+++.++.++.. .|-..++++|+..+....|.+++++||+||+++..+.++++.+.+
T Consensus 39 ~~i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~-~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~ 117 (229)
T cd02540 39 LGPDRIVVVVGHGAEQVKKALANPNVEFVLQEEQ-LGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHRE 117 (229)
T ss_pred CCCCeEEEEECCCHHHHHHHhCCCCcEEEECCCC-CCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHh
Confidence 3477877776 4577888887778887665433 233447888988874336889999999999999999999998865
Q ss_pred C-CCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-CcCCC
Q 027992 86 A-PDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLH 162 (215)
Q Consensus 86 ~-~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~~~~ 162 (215)
+ .++.+. ..+.. +|... .+..+++|.+..+.+.. ...++|..-.....+.|+|+.+.+.+ +....
T Consensus 118 ~~~~~~~~--~~~~~-----~p~~~~~~~~~~~~~v~~~~ek~-----~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~ 185 (229)
T cd02540 118 AGADVTVL--TAELE-----DPTGYGRIIRDGNGKVLRIVEEK-----DATEEEKAIREVNAGIYAFDAEFLFEALPKLT 185 (229)
T ss_pred cCCcEEEE--EEEcC-----CCCCccEEEEcCCCCEEEEEECC-----CCChHHHhhceEEeEEEEEEHHHHHHHHHHcc
Confidence 3 344333 23332 22211 22335556543322111 00112211134466789998765433 22221
Q ss_pred CCCCCCcc-ch-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHH
Q 027992 163 PTPLQLEE-DL-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDV 202 (215)
Q Consensus 163 ~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl 202 (215)
... ...+ ++ +... .+..|.++..++.+ .+-+.|+|+.|+
T Consensus 186 ~~~-~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 186 NNN-AQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred ccc-CCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 110 0111 12 2233 33368889888864 799999999985
No 26
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.00 E-value=4.2e-08 Score=85.89 Aligned_cols=191 Identities=17% Similarity=0.225 Sum_probs=106.4
Q ss_pred ccCCCCcEEEEcC--cHHHHHHHHHcCCe--EEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 6 HSFLFCGLVVATD--DEKIAECCQQFGAD--VIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 6 ~~~~~d~ivV~td--~~~i~~~~~~~g~~--v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
....+++|+|++. .+++.+.+..++.. ++..... .+...+++.++..+....|.++++.||+||++++.++++++
T Consensus 44 ~~~gi~~ivvv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~ 122 (446)
T PRK14353 44 ASLGPSRVAVVVGPGAEAVAAAAAKIAPDAEIFVQKER-LGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRE 122 (446)
T ss_pred HhCCCCcEEEEECCCHHHHHHHhhccCCCceEEEcCCC-CCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHH
Confidence 3345889888884 46677776665433 3333222 23345677787776433467889999999999999999998
Q ss_pred HHHcCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-Cc
Q 027992 82 ALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YP 159 (215)
Q Consensus 82 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~ 159 (215)
.+.+..+..+.+ .+.. ++..+ .+.. ++|.+..+.+.+-+ ...+..-.....+.|.|+...+.. +.
T Consensus 123 ~~~~~~~~~i~~--~~~~-----~~~~~g~~~~-~~g~v~~~~ek~~~-----~~~~~~~~~~~~Giy~~~~~~l~~~l~ 189 (446)
T PRK14353 123 RLADGADVVVLG--FRAA-----DPTGYGRLIV-KGGRLVAIVEEKDA-----SDEERAITLCNSGVMAADGADALALLD 189 (446)
T ss_pred hHhcCCcEEEEE--EEeC-----CCCcceEEEE-CCCeEEEEEECCCC-----ChHHhhceEEEEEEEEEEHHHHHHHHH
Confidence 665444544432 2322 11111 2223 45554433221100 000000124456778887654432 22
Q ss_pred CCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEecC-CCCCCCCHHHHHHHHHHHHh
Q 027992 160 GLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKVDH-EAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 160 ~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~~-~~idIdt~~Dl~~ae~il~~ 211 (215)
...... ...+ ++ +... .++.|.++..+..+. .-.||||++|+..|+.+++.
T Consensus 190 ~~~~~~-~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~ 244 (446)
T PRK14353 190 RVGNDN-AKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQA 244 (446)
T ss_pred hhcccC-CCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHH
Confidence 211110 0111 22 2223 334788898888754 45699999999999988764
No 27
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.99 E-value=5.2e-08 Score=85.32 Aligned_cols=189 Identities=18% Similarity=0.267 Sum_probs=110.6
Q ss_pred cCCCCcEEEEc--CcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 7 SFLFCGLVVAT--DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 7 ~~~~d~ivV~t--d~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
...+++|+|++ +.+.+.+.+.++++.++..+..+ +...++++++..+. +.|.++++.||+||+++..++++++.+.
T Consensus 40 ~~g~~~iiiv~~~~~~~i~~~~~~~~i~~~~~~~~~-G~~~ai~~a~~~l~-~~~~~lv~~~D~p~i~~~~~~~l~~~~~ 117 (451)
T TIGR01173 40 ALGPQKIHVVYGHGAEQVRKALANRDVNWVLQAEQL-GTGHAVLQALPFLP-DDGDVLVLYGDVPLISAETLERLLEAHR 117 (451)
T ss_pred hCCCCeEEEEECCCHHHHHHHhcCCCcEEEEcCCCC-chHHHHHHHHHhcC-CCCcEEEEECCcCCcCHHHHHHHHHHHh
Confidence 34567877776 45778888877787776554442 33347888888874 2368999999999999999999999886
Q ss_pred cCCCceEEeecccCCCCccCCCC-ceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-CcCCC
Q 027992 85 AAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLH 162 (215)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~~~~ 162 (215)
+...++++ .+.. +|. ...+..+++|.+..+.+.+ ....+|+.......+.|+|+.+.+.+ +....
T Consensus 118 ~~~~~~~~---~~~~-----~~~~~g~v~~d~~g~v~~~~ek~-----~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~ 184 (451)
T TIGR01173 118 QNGITLLT---AKLP-----DPTGYGRIIRENDGKVTAIVEDK-----DANAEQKAIKEINTGVYVFDGAALKRWLPKLS 184 (451)
T ss_pred hCCEEEEE---EecC-----CCCCCCEEEEcCCCCEEEEEEcC-----CCChHHhcCcEEEEEEEEEeHHHHHHHHHhcc
Confidence 53222222 2321 111 1122335556554332211 00112221234556779998876543 22211
Q ss_pred CCCCCCccc-hh-hhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHh
Q 027992 163 PTPLQLEED-LE-QLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 163 ~~~~~~~e~-l~-~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~ 211 (215)
... ...|. +. ... ++..|.++..++.+ ...++|+|++|+..++.++..
T Consensus 185 ~~~-~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~ 237 (451)
T TIGR01173 185 NNN-AQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQR 237 (451)
T ss_pred ccc-ccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHH
Confidence 111 11111 22 222 33467788888754 469999999999999887754
No 28
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=98.96 E-value=5.5e-08 Score=76.84 Aligned_cols=173 Identities=21% Similarity=0.240 Sum_probs=103.7
Q ss_pred CCCCcEEEEcC--cHHHHHHHHH---cCCeE-EeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 8 FLFCGLVVATD--DEKIAECCQQ---FGADV-IMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 8 ~~~d~ivV~td--~~~i~~~~~~---~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
..+++|+|+|+ ++.+.+.+.. +|+.+ +.++.+. .|+ .++..+++.+ ..+.++++.||+|+ +.++.+++
T Consensus 42 ~g~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~G~~~~l~~a~~~~--~~~~~lv~~~D~~~--~~~~~~~l 116 (223)
T cd06915 42 QGISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPEP-LGTGGAIKNALPKL--PEDQFLVLNGDTYF--DVDLLALL 116 (223)
T ss_pred CCCCEEEEEcccCHHHHHHHHcCccccCceEEEEECCCC-CcchHHHHHHHhhc--CCCCEEEEECCccc--CCCHHHHH
Confidence 35899999996 5667766653 35554 3343333 344 4678888877 34679999999987 45788999
Q ss_pred HHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCc
Q 027992 81 KALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP 159 (215)
Q Consensus 81 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~ 159 (215)
+.+++ +.++.+.+ .+... .+...++..+++|.+..+.+.+ ++.-......+.|+|+.+++....
T Consensus 117 ~~~~~~~~~~~~~~--~~~~~----~~~~~~v~~d~~~~v~~~~ek~---------~~~~~~~~~~Giy~~~~~~l~~~~ 181 (223)
T cd06915 117 AALRASGADATMAL--RRVPD----ASRYGNVTVDGDGRVIAFVEKG---------PGAAPGLINGGVYLLRKEILAEIP 181 (223)
T ss_pred HHHHhCCCcEEEEE--EECCC----CCcceeEEECCCCeEEEEEeCC---------CCCCCCcEEEEEEEECHHHHhhCC
Confidence 98864 34444443 23211 1122233345666665443211 111124557788999988876543
Q ss_pred CCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHH
Q 027992 160 GLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIE 206 (215)
Q Consensus 160 ~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae 206 (215)
... .. .+ .+-.+ ++..| ++..++.+...+||||++||..|+
T Consensus 182 ~~~-~~---~~-~~~~~~l~~~~-~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 182 ADA-FS---LE-ADVLPALVKRG-RLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred ccC-CC---hH-HHHHHHHHhcC-cEEEEecCCeEEecCCHHHHHhhC
Confidence 221 10 00 01222 23345 788888777789999999998873
No 29
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.92 E-value=1.2e-07 Score=82.53 Aligned_cols=180 Identities=23% Similarity=0.329 Sum_probs=101.3
Q ss_pred CCcEEEEc--CcHHHHHHHHHc--CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 10 FCGLVVAT--DDEKIAECCQQF--GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 10 ~d~ivV~t--d~~~i~~~~~~~--g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
+++|+|++ +++.+.+.+.++ +++++..+.....|+. .++. +....|.+++++||+||++++.++++++
T Consensus 44 ~~~i~Ivv~~~~~~i~~~~~~~~~~v~~~~~~~~~~~gt~~al~~----~~~~~d~vlv~~gD~p~~~~~~l~~l~~--- 116 (430)
T PRK14359 44 SDDVHVVLHHQKERIKEAVLEYFPGVIFHTQDLENYPGTGGALMG----IEPKHERVLILNGDMPLVEKDELEKLLE--- 116 (430)
T ss_pred CCcEEEEECCCHHHHHHHHHhcCCceEEEEecCccCCCcHHHHhh----cccCCCeEEEEECCccCCCHHHHHHHHh---
Confidence 46666666 567788877765 4455433322223333 2332 2224588999999999999999887653
Q ss_pred cCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCC-eeEEeeeeeechHHHhhCc-CC
Q 027992 85 AAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP-YLLHLGIQSYDSNFLKIYP-GL 161 (215)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p-~~~~~~~~~~~~~~l~~~~-~~ 161 (215)
.+.+..+++ .+.. +|... ++.. ++|.+..+.+.. ..++++.+ ...+.+.|+|+.+++..+. .+
T Consensus 117 ~~~~~~v~~--~~~~-----~~~~~g~v~~-d~g~v~~i~e~~------~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~ 182 (430)
T PRK14359 117 NDADIVMSV--FHLA-----DPKGYGRVVI-ENGQVKKIVEQK------DANEEELKIKSVNAGVYLFDRKLLEEYLPLL 182 (430)
T ss_pred CCCCEEEEE--EEcC-----CCccCcEEEE-cCCeEEEEEECC------CCCcccccceEEEeEEEEEEHHHHHHHHHhc
Confidence 234544443 2332 12222 2222 356554332211 11233333 3446778999988776542 21
Q ss_pred CCCCCCCcc-ch-hhh-hhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHh
Q 027992 162 HPTPLQLEE-DL-EQL-KVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 162 ~~~~~~~~e-~l-~~~-~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~ 211 (215)
.... +..| ++ +.. .+++.|.++..++.+ ....||||++||..|+.+|..
T Consensus 183 ~~~~-~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~ 235 (430)
T PRK14359 183 KNQN-AQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQE 235 (430)
T ss_pred Cccc-ccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHH
Confidence 1110 1112 22 222 244468889988875 467899999999999998865
No 30
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.91 E-value=1.6e-07 Score=82.50 Aligned_cols=190 Identities=16% Similarity=0.191 Sum_probs=105.2
Q ss_pred cCCCCcEEEEc--CcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 7 SFLFCGLVVAT--DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 7 ~~~~d~ivV~t--d~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
...+++++|++ +++++.+.... +..++..+.. .+...++++++..+....|.++++++|+||+++++++++++.++
T Consensus 42 ~~gi~~iivvv~~~~~~i~~~~~~-~~~~~~~~~~-~g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~ 119 (458)
T PRK14354 42 KAGIDKIVTVVGHGAEEVKEVLGD-RSEFALQEEQ-LGTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHE 119 (458)
T ss_pred hCCCCeEEEEeCCCHHHHHHHhcC-CcEEEEcCCC-CCHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHH
Confidence 34578887766 34556555432 3444433322 23334678888877432478999999999999999999999886
Q ss_pred cCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCC--CeeEEeeeeeechHHHhh-CcC
Q 027992 85 AAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQF--PYLLHLGIQSYDSNFLKI-YPG 160 (215)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~--p~~~~~~~~~~~~~~l~~-~~~ 160 (215)
+. ++..++...+.. +|... .+..+++|.+.-+-+.+ + .+++. ......+.|+|+.+.+.. +..
T Consensus 120 ~~-~~~~t~~~~~~~-----~~~~~g~v~~d~~~~V~~~~ek~-~------~~~~~~~~~~~~~Giy~f~~~~l~~~l~~ 186 (458)
T PRK14354 120 EH-KAAATILTAIAE-----NPTGYGRIIRNENGEVEKIVEQK-D------ATEEEKQIKEINTGTYCFDNKALFEALKK 186 (458)
T ss_pred hc-CCceEEEEEEcC-----CCCCceEEEEcCCCCEEEEEECC-C------CChHHhcCcEEEEEEEEEEHHHHHHHHHH
Confidence 42 222222222221 12211 22235555543221110 0 11111 134566779998765433 222
Q ss_pred CCCCCCCCccch-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHh
Q 027992 161 LHPTPLQLEEDL-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 161 ~~~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~ 211 (215)
..........++ +... ++..|.++..++.+ ...++|||++||..|+.++..
T Consensus 187 ~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~ 241 (458)
T PRK14354 187 ISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRR 241 (458)
T ss_pred hCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHH
Confidence 211100001112 2222 33467888888764 689999999999999988753
No 31
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.82 E-value=3.4e-07 Score=80.22 Aligned_cols=188 Identities=15% Similarity=0.226 Sum_probs=104.3
Q ss_pred CCCCcEEEEcC--cHHHHHHHHHc-CCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 8 FLFCGLVVATD--DEKIAECCQQF-GADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 8 ~~~d~ivV~td--~~~i~~~~~~~-g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
..+++++|++. .+.+.+.+.++ ++.++..+ .. .|+ .+++.++..+....+.++++.+|+||+++++++++++.+
T Consensus 42 ~g~~~iivvv~~~~~~i~~~~~~~~~i~~v~~~-~~-~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~ 119 (450)
T PRK14360 42 LKPDRRLVIVGHQAEEVEQSLAHLPGLEFVEQQ-PQ-LGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTH 119 (450)
T ss_pred CCCCeEEEEECCCHHHHHHHhcccCCeEEEEeC-Cc-CCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHH
Confidence 45667766663 45666666654 35555433 22 343 467777777643235688899999999999999999988
Q ss_pred HcCCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-cCC
Q 027992 84 QAAPDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGL 161 (215)
Q Consensus 84 ~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~~~ 161 (215)
++. ++.+++...+.. +|.. .++..+++|.+..+.+.+-+. ..|........+.|+|+.+.+.++ ..+
T Consensus 120 ~~~-~~~~~~~~~~~~-----~~~~~g~~~~d~~g~v~~~~ek~~~~-----~~~~~~~~~~~Giy~f~~~~l~~~~~~~ 188 (450)
T PRK14360 120 RSS-NADVTLLTARLP-----NPKGYGRVFCDGNNLVEQIVEDRDCT-----PAQRQNNRINAGIYCFNWPALAEVLPKL 188 (450)
T ss_pred Hhc-CCcEEEEEEecC-----CCCCccEEEECCCCCEEEEEECCCCC-----hhHhcCcEEEEEEEEEEHHHHHHHHhhc
Confidence 753 333443223322 2221 123345667665442221000 011111355677899987666543 222
Q ss_pred CCCCCCCccchh-hhhhhhcCCeeEEEE--ecCCCCCCCCHHHHHHHHHHHHh
Q 027992 162 HPTPLQLEEDLE-QLKVLENGYKMKVIK--VDHEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 162 ~~~~~~~~e~l~-~~~~~~~g~~v~~~~--~~~~~idIdt~~Dl~~ae~il~~ 211 (215)
.........++. ..+.+. .+..+. ....+++|||++|++.++.++..
T Consensus 189 ~~~~~~~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~ 238 (450)
T PRK14360 189 SSNNDQKEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQN 238 (450)
T ss_pred cccccCCceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHH
Confidence 211111122232 233332 222222 34688999999999999999864
No 32
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.81 E-value=6.7e-07 Score=78.67 Aligned_cols=192 Identities=20% Similarity=0.208 Sum_probs=111.2
Q ss_pred cCCCCcEEEEcCc--HHHHHHHHHc-CCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 7 SFLFCGLVVATDD--EKIAECCQQF-GADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 7 ~~~~d~ivV~td~--~~i~~~~~~~-g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
...+++|+|++.. +++.+.+.+. ++.++..+.. .|+ .++..++..+....|.++++.||+||+++.+++++++.
T Consensus 43 ~~gi~~iiiv~~~~~~~i~~~~~~~~~i~~~~~~~~--~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~ 120 (459)
T PRK14355 43 EAGAGRIVLVVGHQAEKVREHFAGDGDVSFALQEEQ--LGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAA 120 (459)
T ss_pred hcCCCeEEEEECCCHHHHHHHhccCCceEEEecCCC--CCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHH
Confidence 3467888888743 5676666543 3344334333 344 46778887774335789999999999999999999998
Q ss_pred HHcCCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-CcC
Q 027992 83 LQAAPDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPG 160 (215)
Q Consensus 83 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~~ 160 (215)
+... ++.+++...+.. +|.. ..+..+++|.+..+.+.+ +. ..+|..-.....+.|+|..+++.+ ...
T Consensus 121 ~~~~-~~~~~v~~~~~~-----~~~~~g~v~~d~~g~v~~~~ek~-~~----~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 189 (459)
T PRK14355 121 HRAT-GAAVTVLTARLE-----NPFGYGRIVRDADGRVLRIVEEK-DA----TPEERSIREVNSGIYCVEAAFLFDAIGR 189 (459)
T ss_pred HHhc-CCcEEEEEEEcC-----CCCcCCEEEEcCCCCEEEEEEcC-CC----ChhHhhccEEEEEEEEEeHHHHHHHHHH
Confidence 8653 455554433332 2221 122345566554332211 10 112221234567789998775433 222
Q ss_pred CCCCCCCCccch-hhhh-hhhcCCeeEEEEecC--CCCCCCCHHHHHHHHHHHHh
Q 027992 161 LHPTPLQLEEDL-EQLK-VLENGYKMKVIKVDH--EAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 161 ~~~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~~--~~idIdt~~Dl~~ae~il~~ 211 (215)
+.........++ +... ++..|.++..++.+. .-++|+|++|+..|..++..
T Consensus 190 ~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~ 244 (459)
T PRK14355 190 LGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRR 244 (459)
T ss_pred cCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHH
Confidence 211100011112 2223 334678888887643 48899999999999887754
No 33
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=98.73 E-value=5.3e-07 Score=70.11 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=53.5
Q ss_pred CCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCC-CCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 8 FLFCGLVVATDDEKIAECCQQFGADVIMTSES-CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 8 ~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~-~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
..+++|+|++.... . ....+++.++..+.. ..+...+++.|+... +.|.++++.||+||++++.|+++++.+.+
T Consensus 42 ~~~~~i~vv~~~~~-~-~~~~~~~~~v~~~~~~~~g~~~~i~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 42 PQVDEIVINANRNL-A-RYAAFGLPVIPDSLADFPGPLAGILAGLKQA--RTEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred hhCCEEEEECCCCh-H-HHHhcCCcEEeCCCCCCCCCHHHHHHHHHhc--CCCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 56889999986432 1 234567776544322 123456788888865 56899999999999999999999998754
No 34
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.68 E-value=5.2e-07 Score=70.71 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=53.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
.+++|+|++...+........++.++..+....|...++..|+..+ +.|.++++.||+||++++.|+.+++.+..
T Consensus 46 ~~~~ivvv~~~~~~~~~~~~~~~~~i~~~~~~~G~~~si~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 46 CADEVYIITPWPERYQSLLPPGCHWLREPPPSQGPLVAFAQGLPQI--KTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred hCCEEEEECCCHHHHHhhccCCCeEecCCCCCCChHHHHHHHHHhC--CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 4689999997544332222235665544433234456889999887 35899999999999999999999998754
No 35
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=98.64 E-value=1.7e-06 Score=65.20 Aligned_cols=71 Identities=28% Similarity=0.399 Sum_probs=61.0
Q ss_pred CCCcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 9 LFCGLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 9 ~~d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
.+++|+|+++ .+.+++++...|++++..|.+ |-..-++++++.+.. =++++.+|.||+.+.+|+.+++.+.
T Consensus 40 ~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG~--GYv~Dl~~al~~l~~---P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 40 IVDEIIVAISPHTPKTKEYLESVGVKVIETPGE--GYVEDLRFALESLGT---PILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCCC--ChHHHHHHHHHhcCC---ceEEEecccccCCHHHHHHHHHHHh
Confidence 6899999994 588999999999999987755 455678899998843 4899999999999999999999986
No 36
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=98.57 E-value=4.6e-08 Score=77.13 Aligned_cols=69 Identities=29% Similarity=0.430 Sum_probs=38.6
Q ss_pred CCcEEEEcCcHHHHHHHH-HcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 10 FCGLVVATDDEKIAECCQ-QFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 10 ~d~ivV~td~~~i~~~~~-~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
++ |+|+|.++++.+.+. .+|+.++.-+ ..|.+ .+..|+... ..+-++++++|-|++++++|+.+++...
T Consensus 44 v~-v~vVs~d~~v~~~a~~~~g~~vl~d~---~~gLN~Al~~a~~~~--~~~~vlvl~aDLPll~~~dl~~~l~~~~ 114 (217)
T PF01983_consen 44 VD-VVVVSRDPEVAALARARLGAEVLPDP---GRGLNAALNAALAAA--GDDPVLVLPADLPLLTPEDLDALLAAAG 114 (217)
T ss_dssp -S-EEEEES--S-TTTTT---SSEEEE------S-HHHHHHHHHH-H----S-EEEE-S--TT--HHHHHHHCT-SS
T ss_pred cC-eEEeccchhhhhhhhhccCCeEecCC---CCCHHHHHHHHHhcc--CCCceEEeecCCccCCHHHHHHHHhccC
Confidence 67 999999999888776 7899987544 24554 456663333 5678999999999999999999988753
No 37
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.57 E-value=8.5e-06 Score=72.21 Aligned_cols=190 Identities=16% Similarity=0.204 Sum_probs=108.9
Q ss_pred ccCCCCcEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 6 HSFLFCGLVVATDD--EKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 6 ~~~~~d~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
....+++|+|++.. +.+.+.+...++.++..+ . ..|+ .+++.++..+....+.++++.||+||+++.+++++++.
T Consensus 46 ~~~gi~~ivvv~~~~~~~i~~~~~~~~i~~v~~~-~-~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~ 123 (481)
T PRK14358 46 RDLGARKIVVVTGHGAEQVEAALQGSGVAFARQE-Q-QLGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVAD 123 (481)
T ss_pred HhCCCCeEEEEeCCCHHHHHHHhccCCcEEecCC-C-cCCcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHH
Confidence 33468999999854 667666665666665433 2 2344 46778887774222337889999999999999999998
Q ss_pred HHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechH---HHhhCc
Q 027992 83 LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSN---FLKIYP 159 (215)
Q Consensus 83 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~---~l~~~~ 159 (215)
++++ ++.+++...+.. ...... .+..+++|.+.-|.+.+-+ ...+..-...+.+.|+|..+ ++....
T Consensus 124 ~~~~-~~~~ti~~~~~~---~~~~yG-~v~~d~~g~v~~~~Ek~~~-----~~~~~~~~~~n~Giyi~~~~~~~~~~~i~ 193 (481)
T PRK14358 124 HRAQ-GSAMTILTGELP---DATGYG-RIVRGADGAVERIVEQKDA-----TDAEKAIGEFNSGVYVFDARAPELARRIG 193 (481)
T ss_pred HHhc-CCeEEEEEEEcC---CCCCce-EEEECCCCCEEEEEECCCC-----ChhHhhCCeEEEEEEEEchHHHHHHHhcC
Confidence 8653 344443333321 111122 2334566665544332100 00010012457788999843 343322
Q ss_pred CCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHh
Q 027992 160 GLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 160 ~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~ 211 (215)
. .. ...|+ + +... ++..|.++..++.. .+.+.+.+..++..++.+++.
T Consensus 194 ~---~~-~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~ 246 (481)
T PRK14358 194 N---DN-KAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRR 246 (481)
T ss_pred C---Cc-cCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHH
Confidence 1 10 11121 3 2223 33467788887753 689999999988888877754
No 38
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.53 E-value=8.6e-06 Score=72.18 Aligned_cols=189 Identities=21% Similarity=0.256 Sum_probs=101.8
Q ss_pred CCCCcEEEEcC--cHHHHHHHHHcCCeE-EeCCCCCCCch-HHHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 8 FLFCGLVVATD--DEKIAECCQQFGADV-IMTSESCRNGT-ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 8 ~~~d~ivV~td--~~~i~~~~~~~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
..+++++|++. .+.+.+.....+..+ +..+.. ..|+ .+++.|+..+.. ..+.++++.||+||+++.+++++++.
T Consensus 45 ~g~~~iivvv~~~~~~i~~~~~~~~~~~~~~~~~~-~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~ 123 (482)
T PRK14352 45 LAPQHLVVVVGHDRERVAPAVAELAPEVDIAVQDE-QPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVAT 123 (482)
T ss_pred cCCCcEEEEECCCHHHHHHHhhccCCccEEEeCCC-CCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHH
Confidence 45778887773 456666655443222 222222 2344 468888887742 24679999999999999999999998
Q ss_pred HHcCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCC-CeeEEeeeeeechHHHhhC-c
Q 027992 83 LQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQF-PYLLHLGIQSYDSNFLKIY-P 159 (215)
Q Consensus 83 ~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~-p~~~~~~~~~~~~~~l~~~-~ 159 (215)
+++. ++.+++...+.. +|... .+..+++|.+..+.+.+- ...+++ -...+.+.|+|..+.|... .
T Consensus 124 ~~~~-~~~~~v~~~~~~-----~p~~yg~~~~~~~g~V~~~~EKp~------~~~~~~~~~~~~~Giy~f~~~~l~~~~~ 191 (482)
T PRK14352 124 HTAE-GNAVTVLTTTLD-----DPTGYGRILRDQDGEVTAIVEQKD------ATPSQRAIREVNSGVYAFDAAVLRSALA 191 (482)
T ss_pred HHhc-CCeEEEEEeecC-----CCCCCCEEEECCCCCEEEEEECCC------CCHHHhhcceEEEEEEEEEHHHHHHHHH
Confidence 8653 344444333332 22221 233355666543322110 011111 1235677899998776542 2
Q ss_pred CCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEecCCCCCCCCH--HHHHHHHHHHH
Q 027992 160 GLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKVDHEAHGVDAP--EDVEKIESFMR 210 (215)
Q Consensus 160 ~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~--~Dl~~ae~il~ 210 (215)
.+.... ...| ++ +... ++..|.++..++.+....|+.++ .|+.+|+.++.
T Consensus 192 ~~~~~~-~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~ 246 (482)
T PRK14352 192 RLSSDN-AQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELN 246 (482)
T ss_pred hhCccc-cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHH
Confidence 222111 0111 22 3333 33467889888765444455444 45565556553
No 39
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=98.51 E-value=1.4e-05 Score=63.89 Aligned_cols=180 Identities=19% Similarity=0.293 Sum_probs=99.5
Q ss_pred CCCCcEEEEcC--cHHHHHHHHH---cCCeE-EeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 8 FLFCGLVVATD--DEKIAECCQQ---FGADV-IMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 8 ~~~d~ivV~td--~~~i~~~~~~---~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
..+++|+|++. .+.+.+...+ ++..+ +..... ..|+ .+++.|+..+. .+.++++.||..+ + ..+.+++
T Consensus 44 ~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~g~~~sl~~a~~~i~--~~~~li~~~D~~~-~-~~~~~~~ 118 (236)
T cd04189 44 AGIEDIGIVVGPTGEEIKEALGDGSRFGVRITYILQEE-PLGLAHAVLAARDFLG--DEPFVVYLGDNLI-Q-EGISPLV 118 (236)
T ss_pred CCCCEEEEEcCCCHHHHHHHhcchhhcCCeEEEEECCC-CCChHHHHHHHHHhcC--CCCEEEEECCeec-C-cCHHHHH
Confidence 46889998884 4666666543 45555 222222 2344 46788887763 3457778999986 3 4577888
Q ss_pred HHHHc-CCCceEEeecccCCCCccCCCCceEEE-EcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC
Q 027992 81 KALQA-APDAVFSTAVTSLKPEDAFDPNRVKCV-VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY 158 (215)
Q Consensus 81 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~ 158 (215)
+.+.. +.+..+. +.+.. +|....++ .+ +|.+.-+.+. | ..........+.|.|....+..+
T Consensus 119 ~~~~~~~~~~~~~--~~~~~-----~~~~~g~~~~d-~~~v~~~~ek--~-------~~~~~~~~~~Giy~~~~~~~~~l 181 (236)
T cd04189 119 RDFLEEDADASIL--LAEVE-----DPRRFGVAVVD-DGRIVRLVEK--P-------KEPPSNLALVGVYAFTPAIFDAI 181 (236)
T ss_pred HHHHhcCCceEEE--EEECC-----CcccceEEEEc-CCeEEEEEEC--C-------CCCCCCEEEEEEEEeCHHHHHHH
Confidence 87754 3343333 23332 12222122 23 3444322111 1 01112345677888887665443
Q ss_pred cCCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992 159 PGLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 159 ~~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~ 211 (215)
....... ..+ ++ +... ++..|.++..++.+...++|+|++|+..|+..+-.
T Consensus 182 ~~~~~~~--~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 182 SRLKPSW--RGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HhcCCCC--CCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 2211110 111 12 2222 33467888888876668999999999999987643
No 40
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=98.46 E-value=2.2e-06 Score=64.32 Aligned_cols=76 Identities=25% Similarity=0.421 Sum_probs=61.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
.+++|+|++..+++.+.+..++++++..+..-.|...++..|+..+. ..+.++++.+|+||+++++++++++.+.+
T Consensus 38 ~~~~Ivvv~~~~~~~~~~~~~~~~~v~~~~~~~G~~~sl~~a~~~~~-~~~~vlv~~~D~p~~~~~~l~~l~~~~~~ 113 (160)
T PF12804_consen 38 GVDDIVVVTGEEEIYEYLERYGIKVVVDPEPGQGPLASLLAALSQLP-SSEPVLVLPCDQPFLSPELLRRLLEALEK 113 (160)
T ss_dssp TESEEEEEESTHHHHHHHTTTTSEEEE-STSSCSHHHHHHHHHHTST-TSSEEEEEETTETTS-HHHHHHHHHHHHH
T ss_pred CCceEEEecChHHHHHHHhccCceEEEeccccCChHHHHHHHHHhcc-cCCCcEEEeCCccccCHHHHHHHHHHHhc
Confidence 47999999999888888888899987665332344557889988874 67899999999999999999999999975
No 41
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=98.45 E-value=3.4e-06 Score=64.26 Aligned_cols=74 Identities=24% Similarity=0.383 Sum_probs=54.5
Q ss_pred CCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 027992 10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 88 (215)
Q Consensus 10 ~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~ 88 (215)
+.+|.|+|.++++...+.+. ++..- ++. .++..++..++.+ +-++++++|-|++++++|.++++..+. .|
T Consensus 45 ~~~i~Vvtpde~~~~~a~~~--~vl~d-----~dLN~Ai~aa~~~~~~p-~~v~vvmaDLPLl~~~~i~~~~~~~~d-~d 115 (210)
T COG1920 45 LGEITVVTPDEEVLVPATKL--EVLAD-----PDLNTAINAALDEIPLP-SEVIVVMADLPLLSPEHIERALSAAKD-AD 115 (210)
T ss_pred cCCceEEcCChHhhhhcccc--eeeec-----cchHHHHHHHHhhCCCC-cceEEEecccccCCHHHHHHHHHhcCC-Cc
Confidence 78999999999887766654 55321 233 3566666666434 789999999999999999999988654 56
Q ss_pred ceEE
Q 027992 89 AVFS 92 (215)
Q Consensus 89 ~~i~ 92 (215)
.+++
T Consensus 116 vvia 119 (210)
T COG1920 116 VVIA 119 (210)
T ss_pred EEEe
Confidence 5555
No 42
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=98.44 E-value=1e-06 Score=67.88 Aligned_cols=77 Identities=17% Similarity=0.313 Sum_probs=55.5
Q ss_pred CCCcEEEEcCcHH---HHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 9 LFCGLVVATDDEK---IAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 9 ~~d~ivV~td~~~---i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
.+++|+|++.++. +..++.++++.++..+....|...++..|+. +..+.|.++++.||+||++++.|+++++.+..
T Consensus 39 ~~~~iivv~~~~~~~~~~~~~~~~~v~~v~~~~~~~g~~~si~~~l~-~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 117 (188)
T TIGR03310 39 FFDEVILVLGHEADELVALLANHSNITLVHNPQYAEGQSSSIKLGLE-LPVQSDGYLFLLGDQPFVTPDIIQLLLEAFAL 117 (188)
T ss_pred CCCcEEEEeCCcHHHHHHHhccCCCeEEEECcChhcCHHHHHHHHhc-CCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHh
Confidence 5889999886544 3444445677776655332344457788876 22356899999999999999999999998865
Q ss_pred C
Q 027992 86 A 86 (215)
Q Consensus 86 ~ 86 (215)
+
T Consensus 118 ~ 118 (188)
T TIGR03310 118 K 118 (188)
T ss_pred C
Confidence 4
No 43
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.40 E-value=2.6e-05 Score=66.34 Aligned_cols=183 Identities=19% Similarity=0.266 Sum_probs=103.2
Q ss_pred cCCCCcEEEEcCc---HHHHHHHHH---cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Q 027992 7 SFLFCGLVVATDD---EKIAECCQQ---FGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 78 (215)
Q Consensus 7 ~~~~d~ivV~td~---~~i~~~~~~---~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~ 78 (215)
...+++|+|++.. +.+.+.+.. ++..+ +..+.. ..|+. +++.++..+. .+-++++.||.|+ ..++.+
T Consensus 42 ~~gi~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~G~~~al~~a~~~l~--~~~~li~~gD~~~--~~~l~~ 116 (353)
T TIGR01208 42 EAGITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQGE-PLGLAHAVYTARDFLG--DDDFVVYLGDNLI--QDGISR 116 (353)
T ss_pred HCCCCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECCC-CCCHHHHHHHHHHhcC--CCCEEEEECCeec--CccHHH
Confidence 3468999988854 556666643 45444 222222 24554 6788887773 2447788899987 367889
Q ss_pred HHHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh
Q 027992 79 VVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI 157 (215)
Q Consensus 79 ~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~ 157 (215)
+++.+.+ +.+..+.+ .+... . ....+.. .++++.+..+.+. | . +........+.|+|+..++..
T Consensus 117 l~~~~~~~~~d~ti~~--~~~~~--~-~~~g~~~-~~~~~~v~~~~ek--p--~-----~~~~~~~~~Giy~~~~~l~~~ 181 (353)
T TIGR01208 117 FVKSFEEKDYDALILL--TKVRD--P-TAFGVAV-LEDGKRILKLVEK--P--K-----EPPSNLAVVGLYMFRPLIFEA 181 (353)
T ss_pred HHHHHHhcCCCcEEEE--EECCC--h-hhCeEEE-EcCCCcEEEEEEC--C--C-----CCCccceEEEEEEECHHHHHH
Confidence 9998864 33433332 33321 0 0122222 3444544332211 1 0 111134567889998755443
Q ss_pred CcCCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992 158 YPGLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 158 ~~~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~ 211 (215)
....... ...| ++ +... ++..|.++..+..+....||+|++|+..|+..+..
T Consensus 182 l~~~~~~--~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~ 236 (353)
T TIGR01208 182 IKNIKPS--WRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILD 236 (353)
T ss_pred HHhcCCC--CCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHh
Confidence 3322211 0112 12 2223 33467889888877667899999999999988865
No 44
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.39 E-value=2.4e-06 Score=65.49 Aligned_cols=76 Identities=17% Similarity=0.323 Sum_probs=55.7
Q ss_pred CCCcEEEEcCcH--HHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 9 LFCGLVVATDDE--KIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 9 ~~d~ivV~td~~--~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
.+++|+|+|.+. .+.+.+..+++.++..+ ....|. .++..|+..+....|.++++.||+||++++.|+++++.+..
T Consensus 40 ~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 118 (186)
T cd04182 40 GLSRVIVVLGAEADAVRAALAGLPVVVVINP-DWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFRE 118 (186)
T ss_pred CCCcEEEECCCcHHHHHHHhcCCCeEEEeCC-ChhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 478999999653 34444555566655444 323444 56888998874347899999999999999999999998864
No 45
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.38 E-value=5e-05 Score=66.58 Aligned_cols=180 Identities=19% Similarity=0.227 Sum_probs=100.0
Q ss_pred CCcEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 027992 10 FCGLVVATDD--EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 87 (215)
Q Consensus 10 ~d~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~ 87 (215)
+++|+|++.. +.+.+... .++.++.++..+ +...++++++..+. +.|.++++.||+||++..+++++++.+++.
T Consensus 42 ~~~i~vv~~~~~~~i~~~~~-~~~~~~~~~~~~-g~~~ai~~a~~~l~-~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~- 117 (448)
T PRK14357 42 AQKVGVVLGHEAELVKKLLP-EWVKIFLQEEQL-GTAHAVMCARDFIE-PGDDLLILYGDVPLISENTLKRLIEEHNRK- 117 (448)
T ss_pred CCcEEEEeCCCHHHHHHhcc-cccEEEecCCCC-ChHHHHHHHHHhcC-cCCeEEEEeCCcccCCHHHHHHHHHHHHhc-
Confidence 4788888753 44444432 245555454332 33446888888774 357899999999999999999999988642
Q ss_pred CceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCC--eeEEeeeeeechHHHhh-CcCCCC
Q 027992 88 DAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKI-YPGLHP 163 (215)
Q Consensus 88 ~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p--~~~~~~~~~~~~~~l~~-~~~~~~ 163 (215)
++.+++...+.. +|... .+..+ +|......+ | . ..++.. .....+.|+|+.+.+.+ +..+..
T Consensus 118 ~~d~ti~~~~~~-----~~~~~g~v~~d-~g~v~~~e~---~-~----~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~ 183 (448)
T PRK14357 118 GADVTILVADLE-----DPTGYGRIIRD-GGKYRIVED---K-D----APEEEKKIKEINTGIYVFSGDFLLEVLPKIKN 183 (448)
T ss_pred CCeEEEEEEEcC-----CCCCcEEEEEc-CCeEEEEEC---C-C----CChHHhcCcEEEeEEEEEEHHHHHHHHHhhCc
Confidence 333343333432 22222 22233 454321111 1 0 111111 24566779998876544 222211
Q ss_pred CCCCCccc-h-hhhhhhhcCCeeEEEEe-c-CCCCCCCCHHHHHHHHHHHHh
Q 027992 164 TPLQLEED-L-EQLKVLENGYKMKVIKV-D-HEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 164 ~~~~~~e~-l-~~~~~~~~g~~v~~~~~-~-~~~idIdt~~Dl~~ae~il~~ 211 (215)
.. ...++ + +....+ .++..+.. + ...++|+|++|+..++.+++.
T Consensus 184 ~~-~~~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~ 231 (448)
T PRK14357 184 EN-AKGEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRM 231 (448)
T ss_pred CC-CCCeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHH
Confidence 10 01111 2 222221 34555554 2 468899999999999988754
No 46
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=98.36 E-value=4.7e-06 Score=63.92 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=54.0
Q ss_pred CCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 10 ~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+++|+|+|..+... ...+++.++..+....|...+++.|+..+ +.|.++++.||+||++++.++.+++.+
T Consensus 40 ~~~iivv~~~~~~~--~~~~~~~~v~~~~~~~G~~~si~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 40 VDEVVISANRDQER--YALLGVPVIPDEPPGKGPLAGILAALRAA--PADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred cCEEEEECCCChHH--HhhcCCcEeeCCCCCCCCHHHHHHHHHhc--CCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 78999999765543 44567777654432223456889999887 478999999999999999999999987
No 47
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=98.33 E-value=8e-05 Score=59.77 Aligned_cols=183 Identities=16% Similarity=0.189 Sum_probs=98.6
Q ss_pred cCCCCcEEEEcCc---HHHHHHHH---HcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992 7 SFLFCGLVVATDD---EKIAECCQ---QFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 79 (215)
Q Consensus 7 ~~~~d~ivV~td~---~~i~~~~~---~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~ 79 (215)
...+++|+|++.. +.+.+... .+++.+.........|+. ++..+...+. .|.++++.||.|+... ++.++
T Consensus 43 ~~gi~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~--~~~~lv~~gD~~~~~~-~~~~~ 119 (240)
T cd02538 43 LAGIREILIISTPEDLPLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIG--DDPVCLILGDNIFYGQ-GLSPI 119 (240)
T ss_pred HCCCCEEEEEeCcchHHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHhcC--CCCEEEEECCEEEccH-HHHHH
Confidence 3568899887742 44555553 355555221112224554 5777777763 3567888999998654 78888
Q ss_pred HHHHHc-CCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh
Q 027992 80 VKALQA-APDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI 157 (215)
Q Consensus 80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~ 157 (215)
++.+.+ +.+..+.+ .+.. +|.. ..+..+++|.+.-+.+. | .+........+.|+|...++..
T Consensus 120 ~~~~~~~~~~~~~~~--~~~~-----~~~~~g~v~~d~~g~v~~~~ek--p-------~~~~~~~~~~Giyi~~~~~l~~ 183 (240)
T cd02538 120 LQRAAAQKEGATVFG--YEVN-----DPERYGVVEFDENGRVLSIEEK--P-------KKPKSNYAVTGLYFYDNDVFEI 183 (240)
T ss_pred HHHHHhcCCCcEEEE--EECC-----chhcCceEEecCCCcEEEEEEC--C-------CCCCCCeEEEEEEEECHHHHHH
Confidence 887753 33443332 2332 1111 12223556665444322 1 1111134567789998876643
Q ss_pred CcCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHh
Q 027992 158 YPGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 158 ~~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~ 211 (215)
....... +..+. + +... .+..| ++..+..+ ...+||+|++|+..|+++++.
T Consensus 184 l~~~~~~--~~~~~~l~d~~~~l~~~g-~~~~~~~~~~g~w~digt~~~~~~a~~~~~~ 239 (240)
T cd02538 184 AKQLKPS--ARGELEITDVNNEYLEKG-KLSVELLGRGFAWLDTGTHESLLEASNFVQT 239 (240)
T ss_pred HHhcCCC--CCCeEEhHHHHHHHHHhC-CeEEEEeCCCcEEEeCCCHHHHHHHHHHHhh
Confidence 3222111 11111 1 2223 22244 34444433 568999999999999998763
No 48
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=98.32 E-value=6.8e-06 Score=63.30 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=54.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHcCCeEEeCC-CCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 9 LFCGLVVATDDEKIAECCQQFGADVIMTS-ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~-~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
.+++|+|+|+.+........+|+.++... ....|..++++.|+..+ +.|.++++.||+||++++.|+++++.+..
T Consensus 40 ~~~~ivv~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~si~~al~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 40 QVSDLAISANRNPERYAQAGFGLPVVPDALADFPGPLAGILAGLRWA--GTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred hCCEEEEEcCCCHHHHhhccCCCcEEecCCCCCCCCHHHHHHHHHhc--CCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 58899999975543322233566665432 12223456788999887 46899999999999999999999998864
No 49
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.20 E-value=5.5e-05 Score=64.82 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=51.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
.+++|+|++..+....+ ..+|+.++..+....|..+.+..|+... ..+.++++.||+||++++.|+.+++..
T Consensus 213 ~~~~vvV~~~~~~~~~~-~~~~v~~i~d~~~~~Gpl~gi~~al~~~--~~~~~lv~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 213 HCQEVFISCRAEQAEQY-RSFGIPLITDSYLDIGPLGGLLSAQRHH--PDAAWLVVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred hCCEEEEEeCCchhhHH-hhcCCcEEeCCCCCCCcHHHHHHHHHhC--CCCcEEEEeCCcCCCCHHHHHHHHHhc
Confidence 46889998876544333 3468877654322223356677787765 457889999999999999999998864
No 50
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=98.12 E-value=0.00034 Score=55.89 Aligned_cols=181 Identities=14% Similarity=0.099 Sum_probs=99.7
Q ss_pred cCCCCcEEEEcC--cHHHHHHHHH----cCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992 7 SFLFCGLVVATD--DEKIAECCQQ----FGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 79 (215)
Q Consensus 7 ~~~~d~ivV~td--~~~i~~~~~~----~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~ 79 (215)
...+++|+|+|. .+.+.+...+ .|+.++........|+ .++..+...+....+.++++.||..+ ...+.++
T Consensus 43 ~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~--~~~~~~~ 120 (233)
T cd06425 43 KAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVIC--DFPLAEL 120 (233)
T ss_pred HCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEee--CCCHHHH
Confidence 346889999985 4556665543 4666543222223454 46788888774323447888999754 3447888
Q ss_pred HHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcC-CCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh
Q 027992 80 VKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDN-HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI 157 (215)
Q Consensus 80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~ 157 (215)
++.+++ +.++.+.+ .+... ... .. .+..++ +|.+..+.+. |. +........+.|+|+.+.+..
T Consensus 121 ~~~~~~~~~~~~~~~--~~~~~--~~~-~g-~v~~d~~~~~v~~~~ek--p~-------~~~~~~~~~Giyi~~~~~l~~ 185 (233)
T cd06425 121 LDFHKKHGAEGTILV--TKVED--PSK-YG-VVVHDENTGRIERFVEK--PK-------VFVGNKINAGIYILNPSVLDR 185 (233)
T ss_pred HHHHHHcCCCEEEEE--EEcCC--ccc-cC-eEEEcCCCCEEEEEEEC--CC-------CCCCCEEEEEEEEECHHHHHh
Confidence 888764 33443332 33321 001 11 222344 5665433222 10 001134567789999887754
Q ss_pred CcCCCCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHH
Q 027992 158 YPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 209 (215)
Q Consensus 158 ~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il 209 (215)
..... .. .+ .+....+....++..++.+....||.|++|+..|.+++
T Consensus 186 l~~~~-~~---~~-~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~ 232 (233)
T cd06425 186 IPLRP-TS---IE-KEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLY 232 (233)
T ss_pred cccCc-cc---ch-hhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHh
Confidence 43211 11 11 12222222234788888777799999999999998764
No 51
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=98.11 E-value=1.8e-05 Score=61.34 Aligned_cols=79 Identities=14% Similarity=0.270 Sum_probs=53.6
Q ss_pred CCCCcEEEEcCcHH--HH---HH-HHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 8 FLFCGLVVATDDEK--IA---EC-CQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 8 ~~~d~ivV~td~~~--i~---~~-~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
..+++|+|++..+. +. +. ....++.++..+....|-.+++..|++++. .+.|+++++.||+||++++.|++++
T Consensus 39 ~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~ 118 (190)
T TIGR03202 39 SRLSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALL 118 (190)
T ss_pred CCCCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHH
Confidence 46889999985432 21 11 122355554444322233457889998763 3578999999999999999999999
Q ss_pred HHHHcC
Q 027992 81 KALQAA 86 (215)
Q Consensus 81 ~~~~~~ 86 (215)
+.+...
T Consensus 119 ~~~~~~ 124 (190)
T TIGR03202 119 ALAKRR 124 (190)
T ss_pred HHHhhC
Confidence 987643
No 52
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.11 E-value=0.00012 Score=57.25 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=41.5
Q ss_pred CCcEEEEcCcHHHHHHHHHcCCeEEeC-CCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 10 FCGLVVATDDEKIAECCQQFGADVIMT-SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 10 ~d~ivV~td~~~i~~~~~~~g~~v~~~-~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
++.|+|++.++.. ..+..++.. .....+....+..++... +.|.++++.||+||++++++++++
T Consensus 49 ~~~vvvv~~~~~~-----~~~~~~v~d~~~~~~gpl~gi~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~ 113 (196)
T PRK00560 49 FKKVYISTKDKKF-----EFNAPFLLEKESDLFSPLFGIINAFLTL--QTPEIFFISVDTPFVSFESIKKLC 113 (196)
T ss_pred CCEEEEEECchhc-----ccCCcEEecCCCCCCCcHHHHHHHHHhc--CCCeEEEEecCcCcCCHHHHHHHH
Confidence 6889999875322 234555443 111122233344555544 568999999999999999999884
No 53
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=97.99 E-value=0.001 Score=55.28 Aligned_cols=182 Identities=14% Similarity=0.178 Sum_probs=98.4
Q ss_pred cCCCCcEEEEc-C--cHHHHHHHH---HcCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Q 027992 7 SFLFCGLVVAT-D--DEKIAECCQ---QFGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 78 (215)
Q Consensus 7 ~~~~d~ivV~t-d--~~~i~~~~~---~~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~ 78 (215)
...+++|+|++ . .+.+.+... ++|..+ +...++. .|++ .+..|...+. +.+ ++++.||.+|.. .++.+
T Consensus 46 ~aGi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~~-~Gta~Al~~a~~~i~-~~~-~~lv~gD~i~~~-~~l~~ 121 (292)
T PRK15480 46 LAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSP-DGLAQAFIIGEEFIG-GDD-CALVLGDNIFYG-HDLPK 121 (292)
T ss_pred HCCCCEEEEEecCCchHHHHHHHcCccccCceeEEEECCCC-CCHHHHHHHHHHHhC-CCC-EEEEECCeeeec-cCHHH
Confidence 34689998655 3 345666543 356654 2222222 4554 5677777763 334 666779999864 57888
Q ss_pred HHHHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHh
Q 027992 79 VVKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK 156 (215)
Q Consensus 79 ~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~ 156 (215)
+++.+.+ +.++.+.+ .+.. +|... .+..+++|.+.-+.+. |. +........+.|+|....+.
T Consensus 122 ll~~~~~~~~~~tv~~--~~v~-----~p~~yGvv~~d~~g~v~~i~EK--P~-------~p~s~~a~~GiY~~~~~v~~ 185 (292)
T PRK15480 122 LMEAAVNKESGATVFA--YHVN-----DPERYGVVEFDQNGTAISLEEK--PL-------QPKSNYAVTGLYFYDNDVVE 185 (292)
T ss_pred HHHHHHhCCCCeEEEE--EEcC-----CcccCcEEEECCCCcEEEEEEC--CC-------CCCCCEEEEEEEEEChHHHH
Confidence 8887753 33433332 2332 22222 1223556665433322 10 11113557788999887655
Q ss_pred hCcCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEecC-CCCCCCCHHHHHHHHHHHH
Q 027992 157 IYPGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVDH-EAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 157 ~~~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~~-~~idIdt~~Dl~~ae~il~ 210 (215)
....+.++. ..|. + +..+ .++.|.....+..+. ..+||.|++|+..|+..++
T Consensus 186 ~~~~~~~~~--~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 186 MAKNLKPSA--RGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred HHhhcCCCC--CCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 443332221 1111 2 2233 344565433334443 5899999999999998886
No 54
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.98 E-value=0.00077 Score=53.27 Aligned_cols=172 Identities=14% Similarity=0.094 Sum_probs=95.9
Q ss_pred ccCCCCcEEEEcC--cHHHHHHHHH--cCCeEEe-CCC-CCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992 6 HSFLFCGLVVATD--DEKIAECCQQ--FGADVIM-TSE-SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 79 (215)
Q Consensus 6 ~~~~~d~ivV~td--~~~i~~~~~~--~g~~v~~-~~~-~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~ 79 (215)
....+++|+|++. .+.+.+.... +|+.+.. ... +..|...++..++..+. .+.++++.||.++- .++.++
T Consensus 41 ~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~--~~~~lv~~~D~i~~--~~~~~~ 116 (221)
T cd06422 41 AAAGIRRIVVNTHHLADQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLG--DEPFLVVNGDILWD--GDLAPL 116 (221)
T ss_pred HHCCCCEEEEEccCCHHHHHHHHhcccCCceEEEecCCCcccccHHHHHHHHHhcC--CCCEEEEeCCeeeC--CCHHHH
Confidence 4456899999995 4666666654 6766532 221 22223346888888773 26799999999874 367788
Q ss_pred HHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC
Q 027992 80 VKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY 158 (215)
Q Consensus 80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~ 158 (215)
++.+.+ ..++.+++...+... ..... .+..+++|.+..+.+. | . ......+.|+|..+.+...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~---~~~~g-~v~~d~~~~v~~~~~~--~---------~-~~~~~~Giyi~~~~~l~~l 180 (221)
T cd06422 117 LLLHAWRMDALLLLLPLVRNPG---HNGVG-DFSLDADGRLRRGGGG--A---------V-APFTFTGIQILSPELFAGI 180 (221)
T ss_pred HHHHHhccCCCceEEEEEEcCC---CCCcc-eEEECCCCcEeecccC--C---------C-CceEEEEEEEEcHHHHhhC
Confidence 887752 234444443323210 01112 2334556655433211 0 0 1355778899988776543
Q ss_pred cCCCCCCCCCccch-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHH
Q 027992 159 PGLHPTPLQLEEDL-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKI 205 (215)
Q Consensus 159 ~~~~~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~a 205 (215)
..- .. .+ +... .+..| ++..++.+....||+|++|+..|
T Consensus 181 ~~~---~~----~~~d~~~~l~~~~-~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 181 PPG---KF----SLNPLWDRAIAAG-RLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred CcC---cc----cHHHHHHHHHHcC-CeEEEecCCEEEcCCCHHHHhhC
Confidence 211 00 11 1222 22234 45555555678999999999754
No 55
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=97.93 E-value=0.00098 Score=55.16 Aligned_cols=182 Identities=17% Similarity=0.229 Sum_probs=96.4
Q ss_pred ccCCCCcEEEEcC--c-HHHHHHHH---HcCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH
Q 027992 6 HSFLFCGLVVATD--D-EKIAECCQ---QFGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 77 (215)
Q Consensus 6 ~~~~~d~ivV~td--~-~~i~~~~~---~~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~ 77 (215)
....+++|+|++. . +.+.+... ++|+++ +..+++ ..|++ ++..+...+. + +-++++.||.+|. ..++.
T Consensus 41 ~~aGi~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q~~-~~Gta~al~~a~~~l~-~-~~~~li~gD~i~~-~~~l~ 116 (286)
T TIGR01207 41 MLAGIRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQPS-PDGLAQAFIIGEDFIG-G-DPSALVLGDNIFY-GHDLS 116 (286)
T ss_pred HHCCCCEEEEEecCCcHHHHHHHhccccccCceEEEEEccC-CCCHHHHHHHHHHHhC-C-CCEEEEECCEecc-ccCHH
Confidence 3456889986663 2 44555543 356655 222222 23554 6777777773 2 4456667999985 46788
Q ss_pred HHHHHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHH
Q 027992 78 GVVKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFL 155 (215)
Q Consensus 78 ~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l 155 (215)
++++.+.+ +.++.+. ..+.. +|... .+..+++|.+.-+.+. |. +........+.|+|....+
T Consensus 117 ~ll~~~~~~~~~~ti~--~~~v~-----~p~~yGvv~~d~~g~V~~i~EK--p~-------~~~s~~~~~GiYi~~~~i~ 180 (286)
T TIGR01207 117 DLLKRAAARESGATVF--AYQVS-----DPERYGVVEFDSNGRAISIEEK--PA-------QPKSNYAVTGLYFYDNRVV 180 (286)
T ss_pred HHHHHHHhcCCCcEEE--EEEcc-----CHHHCceEEECCCCeEEEEEEC--CC-------CCCCCEEEEEEEEEchHHH
Confidence 88887753 3333332 22332 22222 2223556665444322 11 0001345678899987765
Q ss_pred hhCcCCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEe-cC-CCCCCCCHHHHHHHHHHHH
Q 027992 156 KIYPGLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKV-DH-EAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 156 ~~~~~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~-~~-~~idIdt~~Dl~~ae~il~ 210 (215)
.....+.++. ..| .+ +... .+..|. ..+... .. .-+||.|++||..|...++
T Consensus 181 ~~l~~~~~~~--~ge~eitdv~~~~l~~g~-l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 181 EIARQLKPSA--RGELEITDLNRVYLEEGR-LSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred HHHhhcCCCC--CCcEeHHHHHHHHHHcCC-cEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 4333322211 111 12 3223 333453 333333 22 3799999999999988876
No 56
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.91 E-value=0.001 Score=58.57 Aligned_cols=167 Identities=11% Similarity=0.111 Sum_probs=88.3
Q ss_pred cCCCCcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 7 SFLFCGLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 7 ~~~~d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
...+++|+|++. .+.+.+.+...++.++..+.. .+...+++.++..+. +.+.++++.||+||+++.+++++++...
T Consensus 45 ~~gi~~i~vv~~~~~~~i~~~~~~~~~~~i~~~~~-~Gt~~al~~a~~~l~-~~~~vlV~~gD~P~i~~~~i~~l~~~~~ 122 (456)
T PRK09451 45 ELGAQHVHLVYGHGGDLLKQTLADEPLNWVLQAEQ-LGTGHAMQQAAPFFA-DDEDILMLYGDVPLISVETLQRLRDAKP 122 (456)
T ss_pred hcCCCcEEEEECCCHHHHHHhhccCCcEEEECCCC-CCcHHHHHHHHHhhc-cCCcEEEEeCCcccCCHHHHHHHHHHhh
Confidence 346889998885 355666554444555544432 222346777777763 3478999999999999999999988764
Q ss_pred cCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-cCCCC
Q 027992 85 AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP 163 (215)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~~~~~ 163 (215)
+. +..+. ..+.. +|...-++.+++|.+..|.+.+ ... ..+..-.....+.|+|+.+.+.++ ..+..
T Consensus 123 ~~-~~~i~--~~~~~-----~~~~yG~v~~~~g~V~~~~EKp--~~~---~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~ 189 (456)
T PRK09451 123 QG-GIGLL--TVKLD-----NPTGYGRITRENGKVVGIVEQK--DAT---DEQRQIQEINTGILVANGADLKRWLAKLTN 189 (456)
T ss_pred cC-CEEEE--EEEcC-----CCCCceEEEecCCeEEEEEECC--CCC---hHHhhccEEEEEEEEEEHHHHHHHHHhcCC
Confidence 43 32222 22332 1111111223456655443321 000 011101245677899987666432 22211
Q ss_pred CCCCCcc-ch-hhhh-hhhcCCeeEEEEe
Q 027992 164 TPLQLEE-DL-EQLK-VLENGYKMKVIKV 189 (215)
Q Consensus 164 ~~~~~~e-~l-~~~~-~~~~g~~v~~~~~ 189 (215)
.. ...| ++ +... ++..|.++..+..
T Consensus 190 ~~-~~~e~~l~d~i~~~i~~g~~v~~~~~ 217 (456)
T PRK09451 190 NN-AQGEYYITDIIALAHQEGREIVAVHP 217 (456)
T ss_pred cc-ccCceeHHHHHHHHHHCCCeEEEEec
Confidence 11 0111 22 2222 3446788888753
No 57
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=97.89 E-value=0.001 Score=54.00 Aligned_cols=148 Identities=10% Similarity=0.027 Sum_probs=79.4
Q ss_pred CchH-HHHHHHHHhcCCCCEEEEecCCCCCCCH-HHHHHHHHHHHcCCCceEEeecccCCCCccCCCCce-EEEEc----
Q 027992 42 NGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEP-EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVD---- 114 (215)
Q Consensus 42 ~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~-~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~---- 114 (215)
.|+. ++..++..+ ..+.++++.||.|+... .++.++++.+++....++++...+.. ++... .+..+
T Consensus 104 ~G~~~al~~~~~~~--~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~-----~~~~~g~v~~d~~~~ 176 (260)
T TIGR01099 104 KGLGHAVLCAEPFV--GDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEEVPKE-----EVSKYGVIDGEGVEE 176 (260)
T ss_pred CCHHHHHHHHHHhh--CCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEEECChh-----hcccCceEEeccccC
Confidence 4554 677777776 33668999999999877 58999999886532333333211111 11111 12222
Q ss_pred CCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhhhhhcCCeeEEEEecCC
Q 027992 115 NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLKVLENGYKMKVIKVDHE 192 (215)
Q Consensus 115 ~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~~~~~g~~v~~~~~~~~ 192 (215)
++|.+..+.+.+.+ .+........+.|+|+.+.+........+. ..+. + +....+....++..++.+..
T Consensus 177 ~~~~v~~~~Ekp~~-------~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~--~~~~~l~d~i~~l~~~~~v~~~~~~g~ 247 (260)
T TIGR01099 177 GLYEIKDMVEKPKP-------EEAPSNLAIVGRYVLTPDIFDLLEETPPGA--GGEIQLTDALRKLLEKETVYAYKFKGK 247 (260)
T ss_pred CceeEEEEEECCCC-------CCCCCceEEEEEEECCHHHHHHHHhCCCCC--CCceeHHHHHHHHHhcCCEEEEEcceE
Confidence 22455444332100 011113556778999887655442221110 1111 2 22232222346888887667
Q ss_pred CCCCCCHHHHHHH
Q 027992 193 AHGVDAPEDVEKI 205 (215)
Q Consensus 193 ~idIdt~~Dl~~a 205 (215)
..||.|++|+..|
T Consensus 248 w~digs~~~y~~a 260 (260)
T TIGR01099 248 RYDCGSKLGYLKA 260 (260)
T ss_pred EEeCCCHHHHhhC
Confidence 8999999998653
No 58
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=97.88 E-value=0.00017 Score=55.75 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=53.0
Q ss_pred CCCCcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCc-hHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 8 FLFCGLVVATD--DEKIAECCQQFGADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 8 ~~~d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~-~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
..+++|+|++. .+.++..+++.+..+. . ....| ..++..|+..+. ..+.++++.||+||+++++|+.+++++.
T Consensus 40 ~~i~~I~Vv~~~~~~~~~~~l~~~~~~~~-~--~~g~G~~~~l~~al~~~~-~~~~~lv~~~D~P~i~~~~i~~li~~~~ 115 (183)
T TIGR00454 40 SKVNNIIIATSPHTPKTEEYINSAYKDYK-N--ASGKGYIEDLNECIGELY-FSEPFLVVSSDLINLRSKIIDSIVDYYY 115 (183)
T ss_pred CCCCEEEEEeCCCHHHHHHHHhhcCcEEE-e--cCCCCHHHHHHHHhhccc-CCCCEEEEeCCcCcCCHHHHHHHHHHHH
Confidence 34899999985 4567777766554433 2 22234 346788887542 3467999999999999999999999985
Q ss_pred c
Q 027992 85 A 85 (215)
Q Consensus 85 ~ 85 (215)
.
T Consensus 116 ~ 116 (183)
T TIGR00454 116 C 116 (183)
T ss_pred h
Confidence 4
No 59
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=97.85 E-value=0.0042 Score=51.68 Aligned_cols=183 Identities=10% Similarity=0.066 Sum_probs=96.4
Q ss_pred ccCCCCcEEEEcC--cHHHHHHHHH-------------------------cCCeE-EeCCCCCCCchH-HHHHHHHHhcC
Q 027992 6 HSFLFCGLVVATD--DEKIAECCQQ-------------------------FGADV-IMTSESCRNGTE-RCNEALQKLEK 56 (215)
Q Consensus 6 ~~~~~d~ivV~td--~~~i~~~~~~-------------------------~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~ 56 (215)
...++++|+|++. .+.+.+.... +|+++ +....+ .-|++ +++.|...+.
T Consensus 45 ~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~-~lGtg~Av~~a~~~l~- 122 (297)
T TIGR01105 45 VAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQ-PLGLGHSILCARPVVG- 122 (297)
T ss_pred HHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEEeeCCC-cCchHHHHHHHHHHhC-
Confidence 3457899999994 4556555431 35444 222222 23554 6788888774
Q ss_pred CCCEEEEecCCCCCCCH-------HHHHHHHHHHHcCCCceEEeecccCCCCccCCCCce-EEEE----cCCCce---ec
Q 027992 57 KYDIVVNIQGDEPLIEP-------EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVV----DNHGYA---IY 121 (215)
Q Consensus 57 ~~d~v~~~~~d~Pli~~-------~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~----~~~g~~---~~ 121 (215)
+ +-++++.||. +++. -++.++++.+.+...+++.+...+- ++... .+.. +++|.+ .-
T Consensus 123 ~-~~flvv~gD~-l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~------~~~~yGvv~~~~~~d~~g~v~~I~~ 194 (297)
T TIGR01105 123 D-NPFVVVLPDI-IIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPG------DLSEYSVIQTKEPLDREGKVSRIVE 194 (297)
T ss_pred C-CCEEEEECCe-eccccccccchhHHHHHHHHHHHhCCcEEEEEEcCC------CCccceEEEecccccCCCCeeeEeE
Confidence 2 3356666985 4432 4788998887643334433322211 12222 1222 223432 22
Q ss_pred ccCCCCCCCCCCCCCCCCC-eeEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhhhhhcCCeeEEEEecCCCCCCCC
Q 027992 122 FSRGLIPYNKSGKVNPQFP-YLLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLKVLENGYKMKVIKVDHEAHGVDA 198 (215)
Q Consensus 122 ~~~~~ip~~~~~~~~q~~p-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~~~~~g~~v~~~~~~~~~idIdt 198 (215)
|.+. |. .....+ ...+.+.|+|..+.+........+ ...|. + +....+..+.++..+..+...+||-|
T Consensus 195 ~~EK--P~-----~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~--~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~ 265 (297)
T TIGR01105 195 FIEK--PD-----QPQTLDSDLMAVGRYVLSADIWAELERTEPG--AWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGK 265 (297)
T ss_pred EEEC--CC-----CcccCCcCEEEEEEEEECHHHHHHHhcCCCC--CCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCC
Confidence 2111 10 011111 356778899988766654433222 11221 2 23333334457877776667899999
Q ss_pred HHHHHHHHH
Q 027992 199 PEDVEKIES 207 (215)
Q Consensus 199 ~~Dl~~ae~ 207 (215)
|+|+..|..
T Consensus 266 p~~~~~a~~ 274 (297)
T TIGR01105 266 KMGYMQAFV 274 (297)
T ss_pred HHHHHHHHH
Confidence 999999843
No 60
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=97.83 E-value=0.0019 Score=52.67 Aligned_cols=153 Identities=11% Similarity=0.056 Sum_probs=82.4
Q ss_pred Cch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHH-HHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcC----
Q 027992 42 NGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPE-IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN---- 115 (215)
Q Consensus 42 ~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~-~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---- 115 (215)
.|+ .++..++..+. .+.++++.||.++...+ ++.++++.+++....++.+...+.. ......+ +..++
T Consensus 104 ~Gt~~al~~~~~~i~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~g~-v~~d~~~~~ 177 (267)
T cd02541 104 LGLGHAVLCAKPFIG--DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEEVPPE---DVSKYGI-VKGEKIDGD 177 (267)
T ss_pred CChHHHHHHHHHHhC--CCceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEEcChh---cCccceE-EEeecCCCC
Confidence 455 46788877773 26789999999998775 8999999886432333332211110 0011122 22232
Q ss_pred CCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEecCC
Q 027992 116 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVDHE 192 (215)
Q Consensus 116 ~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~~~ 192 (215)
+|.+.-+.+. |.. ..........+.|+|..+++........+ ...|. + +... .+..| ++..++.+..
T Consensus 178 ~~~v~~~~Ek--p~~-----~~~~~~~~~~Giyi~~~~~~~~l~~~~~~--~~~e~~~~d~i~~l~~~~-~v~~~~~~g~ 247 (267)
T cd02541 178 VFKVKGLVEK--PKP-----EEAPSNLAIVGRYVLTPDIFDILENTKPG--KGGEIQLTDAIAKLLEEE-PVYAYVFEGK 247 (267)
T ss_pred ceEEeEEEEC--CCC-----CCCCCceEEEEEEEcCHHHHHHHHhCCCC--CCCcEEHHHHHHHHHhcC-CEEEEEeeeE
Confidence 1244322221 100 00111345677899988766544321111 11111 2 2223 22345 7888877667
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 027992 193 AHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 193 ~idIdt~~Dl~~ae~il~ 210 (215)
..||.|++|+..|..-|.
T Consensus 248 w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 248 RYDCGNKLGYLKATVEFA 265 (267)
T ss_pred EEeCCCHHHHHHHHHHHh
Confidence 899999999998876543
No 61
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.0031 Score=53.92 Aligned_cols=188 Identities=18% Similarity=0.177 Sum_probs=112.0
Q ss_pred cccccCCCCcEEEEcC--cHHHHHHHHH---cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHH
Q 027992 3 VMCHSFLFCGLVVATD--DEKIAECCQQ---FGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEI 75 (215)
Q Consensus 3 ~a~~~~~~d~ivV~td--~~~i~~~~~~---~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~ 75 (215)
..++...|.+|+|++. .+.|.+.... +|..+ +..+.. ..|++ +++++...+.. +.++++.||..+-..
T Consensus 40 ~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~~-~lGTag~l~~a~~~l~~--~~f~v~~GDv~~~~d-- 114 (358)
T COG1208 40 EALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEKE-PLGTAGALKNALDLLGG--DDFLVLNGDVLTDLD-- 114 (358)
T ss_pred HHHHHCCCcEEEEEeccchHHHHHHHhcccccCCceEEEecCC-cCccHHHHHHHHHhcCC--CcEEEEECCeeeccC--
Confidence 3455678999999984 5777777665 35655 222222 34554 78888888742 889999999977666
Q ss_pred HHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCC-eeEEeeeeeechHH
Q 027992 76 IDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP-YLLHLGIQSYDSNF 154 (215)
Q Consensus 76 i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p-~~~~~~~~~~~~~~ 154 (215)
++.+++.++++ .+..++...+... + ....+....++++.+..|...+ ..+..+ ...+.+.|+|....
T Consensus 115 l~~l~~~~~~~-~~~~~~~~~~~~~-~--~~~Gvv~~~~~~~~v~~f~ekp--------~~~~~~~~~in~Giyi~~~~v 182 (358)
T COG1208 115 LSELLEFHKKK-GALATIALTRVLD-P--SEFGVVETDDGDGRVVEFREKP--------GPEEPPSNLINAGIYIFDPEV 182 (358)
T ss_pred HHHHHHHHHhc-cCccEEEEEecCC-C--CcCceEEecCCCceEEEEEecC--------CCCCCCCceEEeEEEEECHHH
Confidence 99999998765 4444433333321 1 1122222211224555443321 011222 57788889998877
Q ss_pred HhhCcCCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992 155 LKIYPGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 155 l~~~~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~ 211 (215)
+.-+..-....+ .+ +... .++.|..+..+..+..-+||+||+|+..|++++..
T Consensus 183 ~~~i~~~~~~~~--~~--~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~ 236 (358)
T COG1208 183 FDYIEKGERFDF--EE--ELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLR 236 (358)
T ss_pred hhhcccCCcccc--hh--hHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHh
Confidence 662221111111 11 1233 23356557777776689999999999999998864
No 62
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=97.75 E-value=0.00065 Score=57.67 Aligned_cols=73 Identities=7% Similarity=-0.013 Sum_probs=50.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
.+++|+|++.++..... ...++.++.......|..++++.|+.... .+.++++.+|+||++++.|..+++.+.
T Consensus 199 ~~~~ViVv~~~~~~~~~-~~~~v~~I~D~~~~~GPlagI~aaL~~~~--~~~~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 199 YCEQVFLSARPSQWQGT-PLENLPTLPDRGESVGPISGILTALQSYP--GVNWLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred hCCEEEEEeCchHhhhc-cccCCeEEeCCCCCCChHHHHHHHHHhCC--CCCEEEEECCcCCCCHHHHHHHHHhhh
Confidence 47889999876542211 11244554433333355678999998763 346789999999999999999999874
No 63
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.61 E-value=0.005 Score=48.47 Aligned_cols=168 Identities=18% Similarity=0.265 Sum_probs=91.3
Q ss_pred cCCCCcEEEEcCc--HHHHHHHHH---cCCeE-E-eCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Q 027992 7 SFLFCGLVVATDD--EKIAECCQQ---FGADV-I-MTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 78 (215)
Q Consensus 7 ~~~~d~ivV~td~--~~i~~~~~~---~g~~v-~-~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~ 78 (215)
...+++|+|++.. +.+.+...+ +|..+ + ..+.. .|+. ++..+... ..+.++++.||. +....+..
T Consensus 41 ~~~~~~iivv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~--~g~~~~l~~~~~~---~~~~~lv~~~D~--i~~~~~~~ 113 (220)
T cd06426 41 AQGFRNFYISVNYLAEMIEDYFGDGSKFGVNISYVREDKP--LGTAGALSLLPEK---PTDPFLVMNGDI--LTNLNYEH 113 (220)
T ss_pred HCCCcEEEEECccCHHHHHHHHCCccccCccEEEEECCCC--CcchHHHHHHHhh---CCCCEEEEcCCE--eeccCHHH
Confidence 3468899999964 445555432 45544 2 22222 3443 33333222 246788889994 66678999
Q ss_pred HHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC
Q 027992 79 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY 158 (215)
Q Consensus 79 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~ 158 (215)
+++.++.. +..+++...+... ..+.. .+..+ +|.+..+.+. | .. ......+.|+|+.+.+...
T Consensus 114 l~~~~~~~-~~~~~~~~~~~~~---~~~~g-~~~~d-~~~v~~~~ek--~--------~~-~~~~~~Giy~~~~~~~~~i 176 (220)
T cd06426 114 LLDFHKEN-NADATVCVREYEV---QVPYG-VVETE-GGRITSIEEK--P--------TH-SFLVNAGIYVLEPEVLDLI 176 (220)
T ss_pred HHHHHHhc-CCCEEEEEEEcCC---CCcce-EEEEC-CCEEEEEEEC--C--------CC-CCeEEEEEEEEcHHHHhhc
Confidence 99988643 2223322223211 11121 12223 3555433321 1 01 1244667899988766543
Q ss_pred cCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHH
Q 027992 159 PGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKI 205 (215)
Q Consensus 159 ~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~a 205 (215)
.. . .++ + +..+ .+..|.++..++.+..-.+|+|++|+..|
T Consensus 177 ~~---~----~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a 219 (220)
T cd06426 177 PK---N----EFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKA 219 (220)
T ss_pred CC---C----CCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhh
Confidence 21 1 111 2 2222 33467789888887778999999999876
No 64
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.56 E-value=0.0049 Score=52.69 Aligned_cols=191 Identities=10% Similarity=0.056 Sum_probs=99.1
Q ss_pred cccccCCCCcEEEEcCc--H-HHHHHHHH---cCCe-------E-EeCCC-CCCCchH-HHHHHHHHhcC-CCCEEEEec
Q 027992 3 VMCHSFLFCGLVVATDD--E-KIAECCQQ---FGAD-------V-IMTSE-SCRNGTE-RCNEALQKLEK-KYDIVVNIQ 65 (215)
Q Consensus 3 ~a~~~~~~d~ivV~td~--~-~i~~~~~~---~g~~-------v-~~~~~-~~~~~~~-~i~~~l~~~~~-~~d~v~~~~ 65 (215)
.++....+++|+|++.. + .|.+.... +|.. + +..+. .+.+|.. ++..+...+.. ..+.++++.
T Consensus 42 ~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvln 121 (369)
T TIGR02092 42 SNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLN 121 (369)
T ss_pred hhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEEC
Confidence 34555789999999954 4 78777742 3433 1 22222 2222333 46666666531 236899999
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEe
Q 027992 66 GDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL 145 (215)
Q Consensus 66 ~d~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~ 145 (215)
||. +...++.++++.+++. ++.+++...+.... ........+..+++|.+..+.+.. + ++.......
T Consensus 122 GD~--l~~~dl~~ll~~h~~~-~a~~tl~~~~v~~~-~~~~~g~vv~~~~~g~v~~~~~~~-~--------~~~~~~~~~ 188 (369)
T TIGR02092 122 SHM--VCNIDLKAVLKYHEET-GKDITVVYKKVKPA-DASEYDTILRFDESGKVKSIGQNL-N--------PEEEENISL 188 (369)
T ss_pred CCE--EEecCHHHHHHHHHHc-CCCEEEEEEecCHH-HccccCcEEEEcCCCCEEeccccC-C--------CCCcceeee
Confidence 998 6678899999888643 33333322332100 001121222234556554332111 1 111123467
Q ss_pred eeeeechHHHhhC-cCCCCCCCCCccch-hhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHH
Q 027992 146 GIQSYDSNFLKIY-PGLHPTPLQLEEDL-EQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESF 208 (215)
Q Consensus 146 ~~~~~~~~~l~~~-~~~~~~~~~~~e~l-~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~i 208 (215)
+.|+|..+.+.+. ....... ....+ +-.+.+..+.++..+..+....||+|++|+..|+.-
T Consensus 189 Giyi~~~~~l~~~l~~~~~~~--~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~ 251 (369)
T TIGR02092 189 DIYIVSTDLLIELLYECIQRG--KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMD 251 (369)
T ss_pred eEEEEEHHHHHHHHHHHhhcC--ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHH
Confidence 7899987654321 1110000 00111 111111125567777766667999999999999843
No 65
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.53 E-value=0.00072 Score=51.78 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=49.5
Q ss_pred CCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHh-cCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 8 FLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 8 ~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~-~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
..+++|+|++...+- . ...++.++.......|.+..+..|+..+ ....|.++++.||+|++++++++++++.+..
T Consensus 27 ~~~~~iivv~~~~~~--~-~~~~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 27 QRCAPVFVMAAPGQP--L-PELPAPVLRDELRGLGPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred hcCCEEEEECCCCcc--c-ccCCCCEeccCCCCCCcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 357899999854321 1 2346665532222123344566667654 2356999999999999999999999987654
No 66
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=97.45 E-value=0.0017 Score=52.09 Aligned_cols=188 Identities=19% Similarity=0.222 Sum_probs=104.5
Q ss_pred ccCCCCc-EEEEcC--cHHHHHHHHHc---CCe--EEeCCCCCCCchH-HHHHHHHHhcCC--CCEEEEecCCCCCCCHH
Q 027992 6 HSFLFCG-LVVATD--DEKIAECCQQF---GAD--VIMTSESCRNGTE-RCNEALQKLEKK--YDIVVNIQGDEPLIEPE 74 (215)
Q Consensus 6 ~~~~~d~-ivV~td--~~~i~~~~~~~---g~~--v~~~~~~~~~~~~-~i~~~l~~~~~~--~d~v~~~~~d~Pli~~~ 74 (215)
....+++ |+|++. .+.+.+..+.. +++ ++..+.. .|++ +++.+...+..+ .+.++++.||.-+-.
T Consensus 42 ~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~~~~i~~i~~~~~--~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~-- 117 (248)
T PF00483_consen 42 ANAGIKEIIVVVNGYKEEQIEEHLGSGYKFGVKIEYIVQPEP--LGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDD-- 117 (248)
T ss_dssp HHTTCSEEEEEEETTTHHHHHHHHTTSGGGTEEEEEEEESSS--SCHHHHHHHTHHHHTTSEE-SEEEEETTEEEEST--
T ss_pred cccCCceEEEEEeecccccccccccccccccccceeeecccc--cchhHHHHHHHHHhhhccccceEEEEeccccccc--
Confidence 4467889 566663 35576666653 323 3444433 3554 677777777432 346999999996555
Q ss_pred HHHHHHHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCC-CeeEEeeeeeech
Q 027992 75 IIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF-PYLLHLGIQSYDS 152 (215)
Q Consensus 75 ~i~~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~-p~~~~~~~~~~~~ 152 (215)
.+..+++.+.+ +.+..+++...+... .+..-.+..+++|.+.-+-+. | +... ..+...+.|+|..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~g~v~~d~~~~V~~~~EK--P-------~~~~~~~~~~~G~Y~~~~ 184 (248)
T PF00483_consen 118 DLQDMLEFHRESNADGTVTLLVVPVED----PSRYGVVEVDEDGRVIRIVEK--P-------DNPNASNLINTGIYIFKP 184 (248)
T ss_dssp THHHHHHHHHHHSSCESEEEEEEESSG----GGGSEEEEEETTSEEEEEEES--C-------SSHSHSSEEEEEEEEEET
T ss_pred hhhhHHHhhhccccccccccccccccc----cccceeeeeccceeEEEEecc--C-------cccccceeccCceEEEcc
Confidence 89999999964 333334433333221 111223334666766544322 1 1111 2456778899987
Q ss_pred HHHhhCcCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEecC--CCCCCCCHHHHHHHHHHHHh
Q 027992 153 NFLKIYPGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVDH--EAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 153 ~~l~~~~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~~--~~idIdt~~Dl~~ae~il~~ 211 (215)
..+......... ....+. + +... .+..|..+..+..+. ..+||.|++|+..|..-+.+
T Consensus 185 ~~~~~~~~~~~~-~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 185 EIFDFLLEMIKE-NARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHHT-CTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred hHHHHHhhhhhc-cchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 665543100000 011221 2 2223 344677776767654 57999999999999877653
No 67
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=97.45 E-value=0.018 Score=46.71 Aligned_cols=186 Identities=11% Similarity=0.068 Sum_probs=96.9
Q ss_pred CCCCcEEEEcC--cHHHHHHHHH----cCCeE-EeCCCCCCCchH-HHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHH
Q 027992 8 FLFCGLVVATD--DEKIAECCQQ----FGADV-IMTSESCRNGTE-RCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDG 78 (215)
Q Consensus 8 ~~~d~ivV~td--~~~i~~~~~~----~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i~~ 78 (215)
..+++|+|++. .+.+.+.... .|..+ +....+. .|+. .+..+...+.. ..+.++++.||.++ ..++..
T Consensus 45 ~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~-~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~--~~dl~~ 121 (257)
T cd06428 45 PDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQEYKP-LGTAGGLYHFRDQILAGNPSAFFVLNADVCC--DFPLQE 121 (257)
T ss_pred CCCcEEEEEecCCHHHHHHHHHhcccccCceEEEecCCcc-CCcHHHHHHHHHHhhccCCCCEEEEcCCeec--CCCHHH
Confidence 47899999995 3556555542 35554 2222222 2333 46666666532 24668889999985 347999
Q ss_pred HHHHHHcCCCceEEeecccCCCCccCCCCceEEEEc-CCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh
Q 027992 79 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD-NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI 157 (215)
Q Consensus 79 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~ 157 (215)
+++.++++ ++.+++...+.... ...+..+ +..+ ++|.+.-+.+. | .+........+.|+|+.+.+..
T Consensus 122 ~~~~h~~~-~~~~tl~~~~~~~~-~~~~yg~-v~~d~~~g~v~~~~Ek--p-------~~~~~~~~~~Giyi~~~~~~~~ 189 (257)
T cd06428 122 LLEFHKKH-GASGTILGTEASRE-QASNYGC-IVEDPSTGEVLHYVEK--P-------ETFVSDLINCGVYLFSPEIFDT 189 (257)
T ss_pred HHHHHHHc-CCCEEEEEEEcccc-ccccccE-EEEeCCCCeEEEEEeC--C-------CCcccceEEEEEEEECHHHHHH
Confidence 99988653 23233322232100 0111222 2234 45665433321 1 1111135678889998877644
Q ss_pred CcCCCCCC---CC--------Ccc---ch--hhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHH
Q 027992 158 YPGLHPTP---LQ--------LEE---DL--EQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESF 208 (215)
Q Consensus 158 ~~~~~~~~---~~--------~~e---~l--~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~i 208 (215)
........ .+ ..+ .+ +....+-...++..++.+....||.|++++..|.++
T Consensus 190 i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 190 IKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred HhhhccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhc
Confidence 33211110 00 000 01 222222123367777777778999999999988764
No 68
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.44 E-value=0.0073 Score=50.21 Aligned_cols=184 Identities=16% Similarity=0.125 Sum_probs=103.4
Q ss_pred cccccCCCCcEEEEcC--cH-HHH----HHHHHcCCeEEe---CCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCC
Q 027992 3 VMCHSFLFCGLVVATD--DE-KIA----ECCQQFGADVIM---TSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLI 71 (215)
Q Consensus 3 ~a~~~~~~d~ivV~td--~~-~i~----~~~~~~g~~v~~---~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli 71 (215)
.|+...++++|+++|. ++ -.. ++..++|++++. .++-+..|.. .++..|... .+. -+++|.+|-=..
T Consensus 48 eal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~eteplgtaGpl~laR~~L~~~-~~~-~ffVLnsDvi~~ 125 (371)
T KOG1322|consen 48 EALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEILASTETEPLGTAGPLALARDFLWVF-EDA-PFFVLNSDVICR 125 (371)
T ss_pred HHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEeccCCCcccchHHHHHHHhhhc-CCC-cEEEecCCeeec
Confidence 4566788999999994 45 233 444446777632 2222222332 233333222 122 466666654333
Q ss_pred CHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcC-CCceecccCCCCCCCCCCCCCCCCC-eeEEeeeee
Q 027992 72 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN-HGYAIYFSRGLIPYNKSGKVNPQFP-YLLHLGIQS 149 (215)
Q Consensus 72 ~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ip~~~~~~~~q~~p-~~~~~~~~~ 149 (215)
=+ +.++++..+.+ ++.+++.+++... +...-.++.++ .|.+.-|.+.+ |++- -..+.+.|+
T Consensus 126 ~p--~~~~vqfH~~~-gae~TI~~t~vde----pSkyGvv~~d~~~grV~~F~EKP----------kd~vsnkinaGiYi 188 (371)
T KOG1322|consen 126 MP--YKEMVQFHRAH-GAEITIVVTKVDE----PSKYGVVVIDEDTGRVIRFVEKP----------KDLVSNKINAGIYI 188 (371)
T ss_pred CC--HHHHHHHHHhc-CCceEEEEEeccC----ccccceEEEecCCCceeEehhCc----------hhhhhccccceEEE
Confidence 22 67888887753 5556665667642 11222223345 67776665432 2222 234578899
Q ss_pred echHHHhhCcCCCCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992 150 YDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~ 210 (215)
|+.+.|.+...++ ++.++ |....+..+++++.+.-+..--||-+|.||..+-.++-
T Consensus 189 ~~~~vL~ri~~~p-tSiek----EifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl 244 (371)
T KOG1322|consen 189 LNPEVLDRILLRP-TSIEK----EIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYL 244 (371)
T ss_pred ECHHHHhHhhhcc-cchhh----hhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHH
Confidence 9998877655332 33322 22233335678888877777889999999999866653
No 69
>PRK10122 GalU regulator GalF; Provisional
Probab=97.43 E-value=0.031 Score=46.56 Aligned_cols=186 Identities=9% Similarity=0.058 Sum_probs=95.4
Q ss_pred ccCCCCcEEEEcC--cHHHHHHHH-------------------------HcCCeE-EeCCCCCCCchH-HHHHHHHHhcC
Q 027992 6 HSFLFCGLVVATD--DEKIAECCQ-------------------------QFGADV-IMTSESCRNGTE-RCNEALQKLEK 56 (215)
Q Consensus 6 ~~~~~d~ivV~td--~~~i~~~~~-------------------------~~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~ 56 (215)
...++++|+|++. .+.+.+... .+|.++ +....+. -|++ ++.++...+.
T Consensus 45 ~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~~q~~~-lGtg~al~~a~~~l~- 122 (297)
T PRK10122 45 VAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGQP-LGLGHSILCARPAIG- 122 (297)
T ss_pred HHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEEEeecCCc-CchHHHHHHHHHHcC-
Confidence 3456899999994 355554432 124443 2222222 3444 6788888773
Q ss_pred CCCEEEEecCCCCCCCH-------HHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEc----CCCc---eecc
Q 027992 57 KYDIVVNIQGDEPLIEP-------EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD----NHGY---AIYF 122 (215)
Q Consensus 57 ~~d~v~~~~~d~Pli~~-------~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~g~---~~~~ 122 (215)
+.+ ++++.||. ++++ -++.++++.+.+...+++.+...+ . ......+ +..+ ++|. +..|
T Consensus 123 ~~~-fvvi~gD~-l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~-~---~~~~yGv-v~~d~~~~~~g~v~~I~~~ 195 (297)
T PRK10122 123 DNP-FVVVLPDV-VIDDASADPLRYNLAAMIARFNETGRSQVLAKRMP-G---DLSEYSV-IQTKEPLDREGKVSRIVEF 195 (297)
T ss_pred CCC-EEEEECCe-eccCccccccchhHHHHHHHHHHhCCcEEEEEECC-C---CCCCceE-EEecCcccCCCCeeeEEEE
Confidence 334 45556887 6654 368899988864322332222111 1 1111222 2222 2442 2222
Q ss_pred cCCCCCCCCCCCCCCCCC-eeEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhhhhhcCCeeEEEEecCCCCCCCCH
Q 027992 123 SRGLIPYNKSGKVNPQFP-YLLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLKVLENGYKMKVIKVDHEAHGVDAP 199 (215)
Q Consensus 123 ~~~~ip~~~~~~~~q~~p-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~~~~~g~~v~~~~~~~~~idIdt~ 199 (215)
.+. |.. ..+.+ .....+.|+|..+.+.......++ ...|. + +....+..+.++..+..+...+||-||
T Consensus 196 ~EK--p~~-----~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~--~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p 266 (297)
T PRK10122 196 IEK--PDQ-----PQTLDSDLMAVGRYVLSADIWPELERTEPG--AWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKK 266 (297)
T ss_pred EEC--CCC-----cccCCccEEEEEEEEECHHHHHHHHhCCCC--CCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCH
Confidence 221 110 01111 356788899988766544332211 11221 2 222322234578887777778999999
Q ss_pred HHHHHHHHHH
Q 027992 200 EDVEKIESFM 209 (215)
Q Consensus 200 ~Dl~~ae~il 209 (215)
+|+..|..-+
T Consensus 267 ~~~~~a~~~~ 276 (297)
T PRK10122 267 MGYMQAFVKY 276 (297)
T ss_pred HHHHHHHHHH
Confidence 9999886654
No 70
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=97.42 E-value=0.019 Score=46.48 Aligned_cols=180 Identities=12% Similarity=0.101 Sum_probs=97.0
Q ss_pred ccCCCCcEEEEc--CcHHHHHHHHHc---C--CeEE--------eCCC--CC---------CCch-HHHHHHHHHhcCCC
Q 027992 6 HSFLFCGLVVAT--DDEKIAECCQQF---G--ADVI--------MTSE--SC---------RNGT-ERCNEALQKLEKKY 58 (215)
Q Consensus 6 ~~~~~d~ivV~t--d~~~i~~~~~~~---g--~~v~--------~~~~--~~---------~~~~-~~i~~~l~~~~~~~ 58 (215)
.+..+++|+|++ ..+.+.+...+. | +.+. .++. .+ ..++ .++.++...+.. .
T Consensus 40 ~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-~ 118 (253)
T cd02524 40 SHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-D 118 (253)
T ss_pred HhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccceeeecccccccceeecccCcccccHHHHHHHHHhcCC-C
Confidence 344789999999 457777766542 2 2221 1110 11 1223 257777777632 2
Q ss_pred CEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCC
Q 027992 59 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ 138 (215)
Q Consensus 59 d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~ 138 (215)
+.++++.||.-+ ...+.++++.+... ++.+++...... .+ ..+ +..+++|.+..+.+.+. . .
T Consensus 119 ~~~lv~~gD~i~--~~dl~~ll~~h~~~-~~~~tl~~~~~~----~~-~g~-v~~d~~g~V~~~~ekp~--~-----~-- 180 (253)
T cd02524 119 ETFMLTYGDGVS--DVNINALIEFHRSH-GKLATVTAVHPP----GR-FGE-LDLDDDGQVTSFTEKPQ--G-----D-- 180 (253)
T ss_pred CeEEEEcCCEEE--CCCHHHHHHHHHHc-CCCEEEEEecCC----Cc-ccE-EEECCCCCEEEEEECCC--C-----C--
Confidence 678999999743 45678888877542 333332221110 01 122 22356676654433211 0 0
Q ss_pred CCeeEEeeeeeechHHHhhCcCCCCCCCCCccch-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992 139 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDL-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 139 ~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~ 212 (215)
......+.|++....+...... . .... +... ++..| ++..++.+..-.+|+|++|+..|+.+++..
T Consensus 181 -~~~i~~Giyi~~~~l~~~l~~~---~---~~~~~d~l~~li~~~-~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 181 -GGWINGGFFVLEPEVFDYIDGD---D---TVFEREPLERLAKDG-ELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred -CceEEEEEEEECHHHHHhhccc---c---chhhHHHHHHHHhcC-CEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 1245567788887765433221 0 1111 2222 22344 566666655789999999999999998654
No 71
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=97.39 E-value=0.039 Score=44.90 Aligned_cols=182 Identities=19% Similarity=0.256 Sum_probs=108.6
Q ss_pred cCCCCcEEEEcCc---HHHHHHH---HHcCCeE--EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH
Q 027992 7 SFLFCGLVVATDD---EKIAECC---QQFGADV--IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 77 (215)
Q Consensus 7 ~~~~d~ivV~td~---~~i~~~~---~~~g~~v--~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~ 77 (215)
...|++|.|++.. +.++++. +++|+.+ ...+.. .|.+ .+.-|-..+ +.|-++++.||+=|.. .+.
T Consensus 43 ~aGI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~~p--~GlA~Av~~a~~fv--~~~~f~l~LGDNi~~~--~l~ 116 (286)
T COG1209 43 LAGIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPEP--DGLAHAVLIAEDFV--GDDDFVLYLGDNIFQD--GLS 116 (286)
T ss_pred HcCCceEEEEecCCchhhhhhhhcCccccCcceEEEecCCC--CcHHHHHHHHHhhc--CCCceEEEecCceecc--ChH
Confidence 3568888777743 4555543 3367665 334433 5655 444444444 4467888999999988 899
Q ss_pred HHHHHHHc-CCCceEEeecccCCCCccCCCCceEEE-EcCCCceecccCCCCCCCCCCCCCCCCC-eeEEeeeeeechHH
Q 027992 78 GVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCV-VDNHGYAIYFSRGLIPYNKSGKVNPQFP-YLLHLGIQSYDSNF 154 (215)
Q Consensus 78 ~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~ip~~~~~~~~q~~p-~~~~~~~~~~~~~~ 154 (215)
+.++.+.+ ..++.+-. .++. +|.+.-++ .+++|++.-..+. | ++-| -+-..+.|+|....
T Consensus 117 ~~~~~~~~~~~ga~i~~--~~V~-----dP~rfGV~e~d~~~~v~~l~EK--P--------~~P~SNlAvtGlY~~d~~V 179 (286)
T COG1209 117 ELLEHFAEEGSGATILL--YEVD-----DPSRYGVVEFDEDGKVIGLEEK--P--------KEPKSNLAVTGLYFYDPSV 179 (286)
T ss_pred HHHHHHhccCCCcEEEE--EEcC-----CcccceEEEEcCCCcEEEeEEC--C--------CCCCCceeEEEEEEeChHH
Confidence 99998864 44544442 3442 45554333 4656665433222 1 1111 23456679998766
Q ss_pred HhhCcCCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992 155 LKIYPGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 155 l~~~~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~ 211 (215)
+.....+.++.=...|-++-.. .++.|..+...++...-+|.-|++|+.-|..++..
T Consensus 180 f~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 180 FEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred HHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 5544444333211122234333 55689888777776688999999999999988754
No 72
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=97.32 E-value=0.0033 Score=49.95 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=44.7
Q ss_pred cCCCCcEEEEcC--cHHHHHHHHH-cCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992 7 SFLFCGLVVATD--DEKIAECCQQ-FGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 79 (215)
Q Consensus 7 ~~~~d~ivV~td--~~~i~~~~~~-~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~ 79 (215)
...+++|+|++. .+.+.+.... .|+.++..+..-..|+ .++..++..+ .+.++++.||.++ +++.++.+
T Consensus 41 ~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~---~~~~lv~~~D~~~-~~~~~~~~ 113 (229)
T cd02523 41 EAGIDDIVIVTGYKKEQIEELLKKYPNIKFVYNPDYAETNNIYSLYLARDFL---DEDFLLLEGDVVF-DPSILERL 113 (229)
T ss_pred HCCCceEEEEeccCHHHHHHHHhccCCeEEEeCcchhhhCcHHHHHHHHHHc---CCCEEEEeCCEec-CHHHHHHH
Confidence 346899999995 4566666655 4666655443212343 4677777776 3678999999986 66555443
No 73
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=97.31 E-value=0.037 Score=46.19 Aligned_cols=151 Identities=10% Similarity=0.056 Sum_probs=78.4
Q ss_pred CchH-HHHHHHHHhcCCCCEEEEecCCCCC------CCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEc
Q 027992 42 NGTE-RCNEALQKLEKKYDIVVNIQGDEPL------IEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD 114 (215)
Q Consensus 42 ~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pl------i~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 114 (215)
.|+. .+..+...+. .+-++++.||.++ ++..++.++++.+.+.....+.+ .+.. ......+ +..+
T Consensus 113 ~Gtg~Av~~a~~~~~--~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~tl~~--~~~~---~~~~yGv-v~~~ 184 (302)
T PRK13389 113 KGLGHAVLCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMV--EPVA---DVTAYGV-VDCK 184 (302)
T ss_pred CChHHHHHHHHHHcC--CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCCEEEE--EEcc---cCCcceE-EEec
Confidence 3443 4666666552 2457888999997 46688999999886432333332 2321 0111222 2222
Q ss_pred C-------CCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhhhhhcCCeeE
Q 027992 115 N-------HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLKVLENGYKMK 185 (215)
Q Consensus 115 ~-------~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~~~~~g~~v~ 185 (215)
+ +|.+..+.+. |.. .+......+.+.|+|....+........+ ...|. + +....+..+.++.
T Consensus 185 ~~~~~~~~~~~V~~~~EK--p~~-----~~~~s~~~~~GiYi~~~~il~~l~~~~~~--~~~e~~l~d~i~~l~~~~~v~ 255 (302)
T PRK13389 185 GVELAPGESVPMVGVVEK--PKA-----DVAPSNLAIVGRYVLSADIWPLLAKTPPG--AGDEIQLTDAIDMLIEKETVE 255 (302)
T ss_pred CcccccCCcceEEEEEEC--CCC-----CCCCccEEEEEEEEECHHHHHHHHhCCCC--CCCeeeHHHHHHHHHHcCCEE
Confidence 1 2233333221 100 00001346778899987765433322211 11222 2 2222222334677
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHH
Q 027992 186 VIKVDHEAHGVDAPEDVEKIESFM 209 (215)
Q Consensus 186 ~~~~~~~~idIdt~~Dl~~ae~il 209 (215)
.+..+...+||.||+|+..|...+
T Consensus 256 ~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 256 AYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred EEEeeeEEEeCCCHHHHHHHHHHH
Confidence 777766789999999999885554
No 74
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=97.30 E-value=0.022 Score=48.51 Aligned_cols=196 Identities=14% Similarity=0.113 Sum_probs=99.6
Q ss_pred ccCCCCcEEEEcC--cHHHHHHHHH-cC--------CeEEe-----CCCCCCCch-HHHHHHHHHhc-CCCCEEEEecCC
Q 027992 6 HSFLFCGLVVATD--DEKIAECCQQ-FG--------ADVIM-----TSESCRNGT-ERCNEALQKLE-KKYDIVVNIQGD 67 (215)
Q Consensus 6 ~~~~~d~ivV~td--~~~i~~~~~~-~g--------~~v~~-----~~~~~~~~~-~~i~~~l~~~~-~~~d~v~~~~~d 67 (215)
....+++|+|++. .+++.+...+ ++ ++++. ...+...|+ .+++.++..+. ...+.++++.||
T Consensus 41 ~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD 120 (361)
T TIGR02091 41 INSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGD 120 (361)
T ss_pred hhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 3456899999995 4667666542 22 12211 011112344 46777777763 234779999999
Q ss_pred CCCCCHHHHHHHHHHHHcC-CCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEe
Q 027992 68 EPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL 145 (215)
Q Consensus 68 ~Pli~~~~i~~~i~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~ 145 (215)
. +....+.++++.++.. .+..+.+...+.. ++... .+..+++|.+..|.+.+.. ..+. ..++--.....
T Consensus 121 ~--l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~-----~~~~~g~v~~d~~~~v~~~~ekp~~-~~~~-~~~~~~~~~~~ 191 (361)
T TIGR02091 121 H--IYKMDYEKMLDYHIESGADVTIACIPVPRK-----EASRFGVMQVDEDGRIVDFEEKPAN-PPSI-PGMPDFALASM 191 (361)
T ss_pred E--EEcCCHHHHHHHHHHcCCCEEEEEEecChH-----hcccccEEEECCCCCEEEEEECCCC-cccc-cccccccEEee
Confidence 8 4566788999887643 2333332212111 11111 2233555655444322110 0000 00100124567
Q ss_pred eeeeechHHHhhC-cCCCCCCCCCccch--hhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992 146 GIQSYDSNFLKIY-PGLHPTPLQLEEDL--EQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 146 ~~~~~~~~~l~~~-~~~~~~~~~~~e~l--~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~ 211 (215)
+.|+|....+..+ ....... ....++ +....+-...++..+..+....||+|++|+..|...+..
T Consensus 192 Giyi~~~~~l~~~l~~~~~~~-~~~~~~~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~ 259 (361)
T TIGR02091 192 GIYIFDKDVLKELLEEDADDP-ESSHDFGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVS 259 (361)
T ss_pred eEEEEcHHHHHHHHHHHhhcC-CcccccHHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhC
Confidence 7899987765322 1110000 000111 122222123377777766668899999999999776643
No 75
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=97.27 E-value=0.033 Score=45.13 Aligned_cols=178 Identities=12% Similarity=0.109 Sum_probs=96.9
Q ss_pred cCCCCcEEEEcC--cHHHHHHHHHc-----CCeEEeCC-------------------CCCCCchH-HHHHHHHHhcCCCC
Q 027992 7 SFLFCGLVVATD--DEKIAECCQQF-----GADVIMTS-------------------ESCRNGTE-RCNEALQKLEKKYD 59 (215)
Q Consensus 7 ~~~~d~ivV~td--~~~i~~~~~~~-----g~~v~~~~-------------------~~~~~~~~-~i~~~l~~~~~~~d 59 (215)
...+++|+|++. .+.+.+..... +.++.... .....|+. +++++...+. .+
T Consensus 42 ~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~--~e 119 (254)
T TIGR02623 42 HHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD--DE 119 (254)
T ss_pred HCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC--CC
Confidence 347999999995 45666665442 22221100 00113443 5677777663 45
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCC
Q 027992 60 IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF 139 (215)
Q Consensus 60 ~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~ 139 (215)
.++++.||. +...++.++++.+.+. ++.+++...+. ... ..+ +..+ +|.+..|.+. |. ..
T Consensus 120 ~flv~~gD~--i~~~dl~~~~~~h~~~-~~d~tl~~~~~----~~~-yG~-v~~d-~~~V~~~~Ek--p~------~~-- 179 (254)
T TIGR02623 120 AFCFTYGDG--VADIDIKALIAFHRKH-GKKATVTAVQP----PGR-FGA-LDLE-GEQVTSFQEK--PL------GD-- 179 (254)
T ss_pred eEEEEeCCe--EecCCHHHHHHHHHHc-CCCEEEEEecC----CCc-ccE-EEEC-CCeEEEEEeC--CC------CC--
Confidence 688999997 4567899999887542 33333222211 011 122 2234 3454434332 10 01
Q ss_pred CeeEEeeeeeechHHHhhCcCCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992 140 PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 140 p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~ 212 (215)
......+.|+|..+.+....... ... . .+... .+..| ++..++.+..-.||+|++|++.|+..++..
T Consensus 180 ~~~i~~Giyi~~~~il~~l~~~~-~~~--~--~d~i~~l~~~~-~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 180 GGWINGGFFVLNPSVLDLIDGDA-TVW--E--QEPLETLAQRG-ELSAYEHSGFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred CCeEEEEEEEEcHHHHhhccccC-chh--h--hhHHHHHHhCC-CEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence 13456788999887764322110 000 0 11222 22244 577777666789999999999999988753
No 76
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.19 E-value=0.02 Score=49.17 Aligned_cols=190 Identities=16% Similarity=0.155 Sum_probs=100.4
Q ss_pred ccccCCCCcEEEEcC--cHHHHHHHHH---cC-------CeEE---eCCCC--CCCch-HHHHHHHHHhcC-CCCEEEEe
Q 027992 4 MCHSFLFCGLVVATD--DEKIAECCQQ---FG-------ADVI---MTSES--CRNGT-ERCNEALQKLEK-KYDIVVNI 64 (215)
Q Consensus 4 a~~~~~~d~ivV~td--~~~i~~~~~~---~g-------~~v~---~~~~~--~~~~~-~~i~~~l~~~~~-~~d~v~~~ 64 (215)
++....+++|+|+|. .+.+.+.... ++ +.++ ....+ +..|+ .+++.++..+.. ..|.++++
T Consensus 44 ~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~ 123 (380)
T PRK05293 44 NCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLIL 123 (380)
T ss_pred HHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCCCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEe
Confidence 344567999999995 4666666532 22 1221 11111 11344 367777777632 24789999
Q ss_pred cCCCCCCCHHHHHHHHHHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCee
Q 027992 65 QGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYL 142 (215)
Q Consensus 65 ~~d~Pli~~~~i~~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~ 142 (215)
.||. +...++.++++.+.+ +.+..+.+...+.. +|... .+..+++|.+..|.+. |. +.-...
T Consensus 124 ~gD~--l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~-----~~~~yG~v~~d~~g~V~~~~eK--p~-------~~~~~~ 187 (380)
T PRK05293 124 SGDH--IYKMDYDKMLDYHKEKEADVTIAVIEVPWE-----EASRFGIMNTDENMRIVEFEEK--PK-------NPKSNL 187 (380)
T ss_pred cCCE--EEcCCHHHHHHHHHhcCCCEEEEEEEcchh-----hccccCEEEECCCCcEEEEEeC--CC-------CCCcce
Confidence 9997 556688899888754 33332332111111 11221 1223555665444322 10 110134
Q ss_pred EEeeeeeechHHHhhC-cCCCCCCCCCccch-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHH
Q 027992 143 LHLGIQSYDSNFLKIY-PGLHPTPLQLEEDL-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM 209 (215)
Q Consensus 143 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il 209 (215)
...+.|+|..+.+..+ .............. +... .++.|.++..++.+....||+|++|+..|...+
T Consensus 188 ~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~ 257 (380)
T PRK05293 188 ASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMEL 257 (380)
T ss_pred eeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHH
Confidence 5677899987655432 11100000111111 2222 233577888887766789999999999998544
No 77
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=97.18 E-value=0.0048 Score=48.06 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=53.1
Q ss_pred CCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 027992 8 FLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 87 (215)
Q Consensus 8 ~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~ 87 (215)
+.++.++|+..... .. ...+|+.++.-.....|..+.+..|++.. ..+.++++.||+||++++.++.++..+....
T Consensus 41 ~~~~~vvi~~~~~~-~~-~~~~g~~vv~D~~~~~GPL~Gi~~al~~~--~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 41 PQVDVVVISANRNQ-GR-YAEFGLPVVPDELPGFGPLAGILAALRHF--GTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred ccCCEEEEeCCCch-hh-hhccCCceeecCCCCCCCHHHHHHHHHhC--CCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 44554555554322 12 45578887642222225577889999987 4789999999999999999999999986543
No 78
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.16 E-value=0.0041 Score=53.30 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=48.2
Q ss_pred CCCcEEEEcCc-H-HHHHHHHHcCCeEEeCCCC-CCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 9 LFCGLVVATDD-E-KIAECCQQFGADVIMTSES-CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 9 ~~d~ivV~td~-~-~i~~~~~~~g~~v~~~~~~-~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
.+++|+|++.. . .+..... +..++..... ..|..++++.|+..+ +.|.++++.||+||++++.|+++++.+..
T Consensus 45 ~~~~iivvv~~~~~~~~~~~~--~~~~i~d~~~g~~G~~~si~~gl~~~--~~~~vlv~~~D~P~i~~~~i~~L~~~~~~ 120 (366)
T PRK14489 45 QFARIHLNINRDPARYQDLFP--GLPVYPDILPGFQGPLSGILAGLEHA--DSEYLFVVACDTPFLPENLVKRLSKALAI 120 (366)
T ss_pred hCCEEEEEcCCCHHHHHhhcc--CCcEEecCCCCCCChHHHHHHHHHhc--CCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence 47888886643 2 2222111 3344322211 123345788998876 46889999999999999999999998754
No 79
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.02 E-value=0.044 Score=47.97 Aligned_cols=196 Identities=17% Similarity=0.137 Sum_probs=102.8
Q ss_pred ccCCCCcEEEEcC--cHHHHHHHHH-c-------CCeEEeCCC------CCCCch-HHHHHHHHHhcC-CCCEEEEecCC
Q 027992 6 HSFLFCGLVVATD--DEKIAECCQQ-F-------GADVIMTSE------SCRNGT-ERCNEALQKLEK-KYDIVVNIQGD 67 (215)
Q Consensus 6 ~~~~~d~ivV~td--~~~i~~~~~~-~-------g~~v~~~~~------~~~~~~-~~i~~~l~~~~~-~~d~v~~~~~d 67 (215)
....+++|+|+|. .+.+.+.... + |...+..+. ....|+ .+++.++..+.. ..+.++++.||
T Consensus 46 ~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD 125 (429)
T PRK02862 46 INSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGD 125 (429)
T ss_pred HHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 4467899999995 4667776643 1 111121111 111344 357777776632 24679999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCC-------C---CCCC
Q 027992 68 EPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNK-------S---GKVN 136 (215)
Q Consensus 68 ~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~-------~---~~~~ 136 (215)
. +. ..++.++++.+++. ++.+++...+... .++... .+..+++|.+..|.+.+-+... + ....
T Consensus 126 ~-l~-~~dl~~ll~~h~~~-~a~~tl~~~~~~~---~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~ 199 (429)
T PRK02862 126 Q-LY-RMDYRLFVQHHRET-GADITLAVLPVDE---KDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPE 199 (429)
T ss_pred E-EE-eCCHHHHHHHHHHc-CCCEEEEEEecCh---hhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccc
Confidence 9 44 56888999888653 3333332222210 111121 2234556665544332111000 0 0000
Q ss_pred CC--CCeeEEeeeeeechHHHhhC-cCCCCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992 137 PQ--FPYLLHLGIQSYDSNFLKIY-PGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 137 q~--~p~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~ 210 (215)
+. .....+.+.|+|..+.|..+ .... +.....+ +....+..+.++..++.+....||.|++++..|...+.
T Consensus 200 ~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~~~~--dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~ 273 (429)
T PRK02862 200 EAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTDFGK--EIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALT 273 (429)
T ss_pred cCCCCceEEEEEEEEEcHHHHHHHHHHCC-ChhhhHH--HHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHH
Confidence 11 11345677899988776543 2211 1111111 11222225667888877667899999999999976654
No 80
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.89 E-value=0.061 Score=42.61 Aligned_cols=174 Identities=17% Similarity=0.186 Sum_probs=87.1
Q ss_pred CCCCcEEEEcCcHHH-----HHHHHH--cCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992 8 FLFCGLVVATDDEKI-----AECCQQ--FGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 79 (215)
Q Consensus 8 ~~~d~ivV~td~~~i-----~~~~~~--~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~ 79 (215)
..+++++|++..+.. .+..+. .++.++..+.. ..|+ .++..|...+. ..+.++++.||. +.+ ..+.++
T Consensus 42 ~g~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~g~~~~l~~a~~~l~-~~~~~lv~~~D~-i~~-~~~~~~ 117 (231)
T cd04183 42 IFDSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDGE-TLGAACTVLLAADLID-NDDPLLIFNCDQ-IVE-SDLLAF 117 (231)
T ss_pred cCCceEEEEEChHHhhhhhHHHHHHHhCCCCEEEEeCCC-CCcHHHHHHHHHhhcC-CCCCEEEEecce-eec-cCHHHH
Confidence 348899999864332 222222 24555434433 2344 46777777663 235688899998 444 456677
Q ss_pred HHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechH-HHhh
Q 027992 80 VKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSN-FLKI 157 (215)
Q Consensus 80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~-~l~~ 157 (215)
+..+.+ ..++.+.+ .+.. ++....+..+++|.+..+.+.. . .......+.|+|... .+..
T Consensus 118 ~~~~~~~~~~~~i~~--~~~~-----~~~~~~v~~d~~~~v~~~~ek~----------~-~~~~~~~Giy~~~~~~~~~~ 179 (231)
T cd04183 118 LAAFRERDLDGGVLT--FFSS-----HPRWSYVKLDENGRVIETAEKE----------P-ISDLATAGLYYFKSGSLFVE 179 (231)
T ss_pred HHHhhccCCceEEEE--EeCC-----CCCeEEEEECCCCCEEEeEEcC----------C-CCCccEeEEEEECcHHHHHH
Confidence 776643 22332222 1211 1122333345666554221110 0 012456678888764 3221
Q ss_pred -CcC-CCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEe-cCCCCCCCCHHHHH
Q 027992 158 -YPG-LHPTPLQLEE-DL-EQLK-VLENGYKMKVIKV-DHEAHGVDAPEDVE 203 (215)
Q Consensus 158 -~~~-~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~-~~~~idIdt~~Dl~ 203 (215)
... .........+ ++ +... .+..|.++..+.. +....||+|++|++
T Consensus 180 ~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl~ 231 (231)
T cd04183 180 AAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDLE 231 (231)
T ss_pred HHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhcC
Confidence 111 0000001111 11 2222 3346778988887 57789999999974
No 81
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=96.71 E-value=0.13 Score=39.99 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=71.8
Q ss_pred CCCCcEEEEcC--cHHHHHHHHH---cCCeE-EeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 8 FLFCGLVVATD--DEKIAECCQQ---FGADV-IMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 8 ~~~d~ivV~td--~~~i~~~~~~---~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
..+++|+|+|. .+.+.+.+.. +|..+ +...... .|+ .+++.++..+ ..+.++++.||.-+ ..++.+++
T Consensus 42 ~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~g~~~al~~~~~~~--~~~~~lv~~~D~~~--~~~~~~~~ 116 (217)
T cd04181 42 AGIDEIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEEP-LGTAGAVRNAEDFL--GDDDFLVVNGDVLT--DLDLSELL 116 (217)
T ss_pred CCCCEEEEEeccCHHHHHHHHcChhhcCceEEEEeCCCC-CccHHHHHHhhhhc--CCCCEEEEECCeec--CcCHHHHH
Confidence 34899999996 4666666554 35554 2222222 344 5678888777 45779999999843 44578888
Q ss_pred HHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHh
Q 027992 81 KALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK 156 (215)
Q Consensus 81 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~ 156 (215)
+.+.. +.+..+.+ .+... ......+..+++|.+..+.+.+. .........+.|+|...++.
T Consensus 117 ~~~~~~~~~~~~~~--~~~~~----~~~~~~v~~d~~~~v~~~~ek~~---------~~~~~~~~~Giy~~~~~~~~ 178 (217)
T cd04181 117 RFHREKGADATIAV--KEVED----PSRYGVVELDDDGRVTRFVEKPT---------LPESNLANAGIYIFEPEILD 178 (217)
T ss_pred HHHHhcCCCEEEEE--EEcCC----CCcceEEEEcCCCcEEEEEECCC---------CCCCCEEEEEEEEECHHHHH
Confidence 77753 33444443 23210 11222233455566544332210 00013556778999887654
No 82
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.42 E-value=0.47 Score=41.55 Aligned_cols=196 Identities=13% Similarity=0.104 Sum_probs=99.7
Q ss_pred ccCCCCcEEEEcC--cHHHHHHHHH-cCC------e-E-EeCC------CCCCCch-HHHHHHHHHhcC-CCCEEEEecC
Q 027992 6 HSFLFCGLVVATD--DEKIAECCQQ-FGA------D-V-IMTS------ESCRNGT-ERCNEALQKLEK-KYDIVVNIQG 66 (215)
Q Consensus 6 ~~~~~d~ivV~td--~~~i~~~~~~-~g~------~-v-~~~~------~~~~~~~-~~i~~~l~~~~~-~~d~v~~~~~ 66 (215)
....+++|+|+|. .+.+.+...+ ++. . + +..+ ++...|+ ..+++++..+.. ..|.++++.|
T Consensus 58 ~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~g 137 (425)
T PRK00725 58 INSGIRRIGVLTQYKAHSLIRHIQRGWSFFREELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAG 137 (425)
T ss_pred HHCCCCeEEEEecCCHHHHHHHHHhhhcccccCCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3457899999995 4666665543 221 1 1 1111 1111344 367778777742 2478999999
Q ss_pred CCCCCCHHHHHHHHHHHHc-CCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEE
Q 027992 67 DEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLH 144 (215)
Q Consensus 67 d~Pli~~~~i~~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~ 144 (215)
|. +...++.++++.+.+ +.+..+++...+.. ++.. -.+..+++|.+..|.+. |........+.-....+
T Consensus 138 D~--l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~-----~~~~yG~v~~d~~~~V~~~~EK--p~~~~~~~~~~~~~l~n 208 (425)
T PRK00725 138 DH--IYKMDYSRMLADHVESGADCTVACLEVPRE-----EASAFGVMAVDENDRITAFVEK--PANPPAMPGDPDKSLAS 208 (425)
T ss_pred Ce--EeccCHHHHHHHHHHcCCCEEEEEEecchh-----hcccceEEEECCCCCEEEEEEC--CCCccccccCccceEEE
Confidence 98 456789999998864 33344443212111 1111 12233556665544332 11000000011124567
Q ss_pred eeeeeechHHHhhC-cCCCCCCCCCccch-hhhhhhhcCCeeEEEEec-----------CCCCCCCCHHHHHHHHHHHH
Q 027992 145 LGIQSYDSNFLKIY-PGLHPTPLQLEEDL-EQLKVLENGYKMKVIKVD-----------HEAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 145 ~~~~~~~~~~l~~~-~~~~~~~~~~~e~l-~~~~~~~~g~~v~~~~~~-----------~~~idIdt~~Dl~~ae~il~ 210 (215)
.+.|+|..+.|..+ ...........+.. +....+....++..++.. ....||.|++++..|...+.
T Consensus 209 ~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll 287 (425)
T PRK00725 209 MGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLA 287 (425)
T ss_pred eeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHc
Confidence 88899988765432 11100000011111 222322233356666542 35689999999999976653
No 83
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=96.37 E-value=0.25 Score=43.42 Aligned_cols=198 Identities=17% Similarity=0.215 Sum_probs=101.8
Q ss_pred cccCCCCcEEEEcC--cHHHHHHHHH-c--C---------CeEEeCCCC------CCCch-HHHHHHHHHhcCC----CC
Q 027992 5 CHSFLFCGLVVATD--DEKIAECCQQ-F--G---------ADVIMTSES------CRNGT-ERCNEALQKLEKK----YD 59 (215)
Q Consensus 5 ~~~~~~d~ivV~td--~~~i~~~~~~-~--g---------~~v~~~~~~------~~~~~-~~i~~~l~~~~~~----~d 59 (215)
+....+++|+|++. .+.+.+.... + + ..+ ..+.+ ...|+ ..+++++..+... .+
T Consensus 45 l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~ 123 (436)
T PLN02241 45 CINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFGDGFVEV-LAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVE 123 (436)
T ss_pred HHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccCCCCEEE-cCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCC
Confidence 34467999999995 4667666643 1 1 111 11111 11233 3455555444211 36
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCC-CCC-----
Q 027992 60 IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-KSG----- 133 (215)
Q Consensus 60 ~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~-~~~----- 133 (215)
.++++.||. + ...++.++++.+++. ++.+++...+...+.. ....+. ..+++|.+..|.+.+-... +..
T Consensus 124 ~~lv~~gD~-v-~~~dl~~ll~~h~~~-~a~~ti~~~~v~~~~~-~~ygvv-~~d~~~~v~~~~Ekp~~~~~~~~~~~~~ 198 (436)
T PLN02241 124 EVLILSGDH-L-YRMDYMDFVQKHRES-GADITIACLPVDESRA-SDFGLM-KIDDTGRIIEFSEKPKGDELKAMQVDTT 198 (436)
T ss_pred EEEEecCCe-E-EccCHHHHHHHHHHc-CCCEEEEEEecchhhc-CcceEE-EECCCCCEEEEEECCCCccccccccccc
Confidence 789999998 3 456899999988653 3333332333321000 112222 2366676654433210000 000
Q ss_pred ---C---CCCCCCeeEEeeeeeechHHHhhC-cCCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHH
Q 027992 134 ---K---VNPQFPYLLHLGIQSYDSNFLKIY-PGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKI 205 (215)
Q Consensus 134 ---~---~~q~~p~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~a 205 (215)
. ..|........+.|+|..+.+... .....+..... .+... +...|.+++.+..+....||++++|+..|
T Consensus 199 ~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~--~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a 276 (436)
T PLN02241 199 VLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFG--SEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEA 276 (436)
T ss_pred ccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchh--HHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHH
Confidence 0 001112456778899987766432 21111110011 12222 22257789988877788999999999999
Q ss_pred HHHHH
Q 027992 206 ESFMR 210 (215)
Q Consensus 206 e~il~ 210 (215)
...+.
T Consensus 277 ~~~~l 281 (436)
T PLN02241 277 NLALT 281 (436)
T ss_pred HHHHh
Confidence 87764
No 84
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.31 E-value=0.088 Score=41.96 Aligned_cols=178 Identities=16% Similarity=0.216 Sum_probs=91.8
Q ss_pred ccccCCCCcEEEEc---CcHHHHHHHHHcCCe--EEeCCCCCC-CchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992 4 MCHSFLFCGLVVAT---DDEKIAECCQQFGAD--VIMTSESCR-NGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 4 a~~~~~~d~ivV~t---d~~~i~~~~~~~g~~--v~~~~~~~~-~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i 76 (215)
.+....+++++||| ..+-+.+...++++. ++.++ ... +++. ++..|.+.+.. -++++.+|- +..+..+
T Consensus 40 ~L~~~gi~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~-~y~ktN~~~Sl~~akd~~~~---~fii~~sD~-vye~~~~ 114 (239)
T COG1213 40 NLAKAGITEFVVVTNGYRADLVEEFLKKYPFNAKIVINS-DYEKTNTGYSLLLAKDYMDG---RFILVMSDH-VYEPSIL 114 (239)
T ss_pred HHHHcCCceEEEEeccchHHHHHHHHhcCCcceEEEeCC-CcccCCceeEEeeehhhhcC---cEEEEeCCE-eecHHHH
Confidence 35567889999999 356778888888754 34444 333 3322 56666666632 388888886 5578888
Q ss_pred HHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHh
Q 027992 77 DGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK 156 (215)
Q Consensus 77 ~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~ 156 (215)
++++++- ...++... .+.. ..-.-...+..++|.+...++.. + + ......+...+....+.
T Consensus 115 e~l~~a~---~~~li~d~-~~~~----~~~~ea~kv~~e~G~i~~igK~l--------~--e-~~~e~iGi~~l~~~i~~ 175 (239)
T COG1213 115 ERLLEAP---GEGLIVDR-RPRY----VGVEEATKVKDEGGRIVEIGKDL--------T--E-YDGEDIGIFILSDSIFE 175 (239)
T ss_pred HHHHhCc---CCcEEEec-cccc----cccCceeEEEecCCEEehhcCCc--------c--c-ccceeeeeEEechHHHH
Confidence 8877653 23333322 2221 00112222335777765433321 0 0 01123444444433222
Q ss_pred h-CcCCCCCCCCCccchhhhh--hhhcCCeeEEEEe---cCCCCCCCCHHHHHHHHHHHHh
Q 027992 157 I-YPGLHPTPLQLEEDLEQLK--VLENGYKMKVIKV---DHEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 157 ~-~~~~~~~~~~~~e~l~~~~--~~~~g~~v~~~~~---~~~~idIdt~~Dl~~ae~il~~ 211 (215)
. +..+. +..+ -+.+ .-+.+.+...+-. ....++||||+|+..|.+++-.
T Consensus 176 ~~~~~~~----e~~~--~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 176 DTYELLV----ERSE--YDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred HHHHHHh----hhhh--HHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 1 11111 0011 1111 1113444433332 1456699999999999998753
No 85
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.17 E-value=0.69 Score=40.20 Aligned_cols=197 Identities=13% Similarity=0.056 Sum_probs=99.5
Q ss_pred ccccCCCCcEEEEcC--cHHHHHHHHH-cC-----CeEEeC-C--C----CCCCchH-HHHHHHHHhcC-CCCEEEEecC
Q 027992 4 MCHSFLFCGLVVATD--DEKIAECCQQ-FG-----ADVIMT-S--E----SCRNGTE-RCNEALQKLEK-KYDIVVNIQG 66 (215)
Q Consensus 4 a~~~~~~d~ivV~td--~~~i~~~~~~-~g-----~~v~~~-~--~----~~~~~~~-~i~~~l~~~~~-~~d~v~~~~~ 66 (215)
++....+++|+|++. .+.+.+.... ++ ...+.. + . .+..|++ .++.++..+.. ..|.++++.|
T Consensus 46 ~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~g 125 (407)
T PRK00844 46 NLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLLGNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGA 125 (407)
T ss_pred HHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccCCCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 344567999999994 5667766642 21 112211 1 0 1123443 57777777643 3378999999
Q ss_pred CCCCCCHHHHHHHHHHHHcC-CCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEe
Q 027992 67 DEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL 145 (215)
Q Consensus 67 d~Pli~~~~i~~~i~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~ 145 (215)
|. +...++.++++.++.+ .+..+.+...+.. ......+ +..+++|.+..|.+.+.+ ..+ .+.+.-....+.
T Consensus 126 D~--v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~---~~~~~Gv-v~~d~~g~v~~~~eKp~~-~~~-~~~~~~~~~~~~ 197 (407)
T PRK00844 126 DH--VYRMDPRQMVDFHIESGAGVTVAAIRVPRE---EASAFGV-IEVDPDGRIRGFLEKPAD-PPG-LPDDPDEALASM 197 (407)
T ss_pred CE--EEcCCHHHHHHHHHhcCCcEEEEEEecchH---HcccCCE-EEECCCCCEEEEEECCCC-ccc-ccCCCCCcEEEe
Confidence 97 5567889999888643 3333332211111 0111222 233556666544322110 000 000111135677
Q ss_pred eeeeechHHHhh-CcCCCCCCCCCccch--hhhhhh-hcCCeeEEEEe------------cCCCCCCCCHHHHHHHHHHH
Q 027992 146 GIQSYDSNFLKI-YPGLHPTPLQLEEDL--EQLKVL-ENGYKMKVIKV------------DHEAHGVDAPEDVEKIESFM 209 (215)
Q Consensus 146 ~~~~~~~~~l~~-~~~~~~~~~~~~e~l--~~~~~~-~~g~~v~~~~~------------~~~~idIdt~~Dl~~ae~il 209 (215)
+.|+|..+.|.. ........ ...+++ +....+ ..| ++..++. .....||.|++|+..|...|
T Consensus 198 Giyi~~~~~l~~~l~~~~~~~-~~~~~~~~dii~~l~~~~-~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~l 275 (407)
T PRK00844 198 GNYVFTTDALVDALRRDAADE-DSSHDMGGDIIPRLVERG-RAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDL 275 (407)
T ss_pred EEEEEeHHHHHHHHHHhhcCC-cccccchhhHHHHHhccC-eEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHH
Confidence 889999877543 22110000 001111 222322 234 5666643 23468999999999997666
Q ss_pred H
Q 027992 210 R 210 (215)
Q Consensus 210 ~ 210 (215)
-
T Consensus 276 L 276 (407)
T PRK00844 276 L 276 (407)
T ss_pred h
Confidence 4
No 86
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=95.61 E-value=0.39 Score=39.43 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=53.7
Q ss_pred cCCCCcEEEEcCcH---HHHHHHHH--cCCeEEeCCCCCCCchH-HHHHHHHHhc--CCCCEEEEecCCCCCCCHHHHHH
Q 027992 7 SFLFCGLVVATDDE---KIAECCQQ--FGADVIMTSESCRNGTE-RCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDG 78 (215)
Q Consensus 7 ~~~~d~ivV~td~~---~i~~~~~~--~g~~v~~~~~~~~~~~~-~i~~~l~~~~--~~~d~v~~~~~d~Pli~~~~i~~ 78 (215)
...+++|+|+|... .+.+.+.. .+..++..|.. .|+. .+..++..+. .+.+.++++.+|.++.+...+.+
T Consensus 46 ~~~~~~i~vvt~~~~~~~v~~~l~~~~~~~~ii~ep~~--~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~ 123 (274)
T cd02509 46 LVPPDRILVVTNEEYRFLVREQLPEGLPEENIILEPEG--RNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLK 123 (274)
T ss_pred CCCCCcEEEEechHHHHHHHHHHhhcCCCceEEECCCC--CCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHH
Confidence 33578999999642 34455544 23455554433 3444 5666665553 23478999999999988887777
Q ss_pred HHHHHHc--CCCceEEeeccc
Q 027992 79 VVKALQA--APDAVFSTAVTS 97 (215)
Q Consensus 79 ~i~~~~~--~~~~~i~~~~~~ 97 (215)
+++...+ ..++++++...+
T Consensus 124 ~l~~~~~~~~~~~~vt~gi~p 144 (274)
T cd02509 124 AVKKAVEAAEEGYLVTFGIKP 144 (274)
T ss_pred HHHHHHHHHHcCCEEEEEeee
Confidence 7765431 134555544333
No 87
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=95.12 E-value=0.48 Score=35.88 Aligned_cols=80 Identities=20% Similarity=0.327 Sum_probs=54.1
Q ss_pred CcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCchH-HHHHHHHHh---cCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 11 CGLVVATD--DEKIAECCQQFGADVIMTSESCRNGTE-RCNEALQKL---EKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 11 d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~---~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
-+|+|+.| .+...+++++++..++.+......|.+ .+..|+... ....|+++++++|.=+ .|+.+.+++..+.
T Consensus 29 ~eiivvdd~s~D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~-~p~~l~~l~~~~~ 107 (183)
T cd06438 29 YRIFVVADNCTDDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVVVFDADNLV-DPNALEELNARFA 107 (183)
T ss_pred cEEEEEeCCCCchHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCC-ChhHHHHHHHHHh
Confidence 35776664 355677888888877544322223444 455666654 2357999999999977 5999999999997
Q ss_pred cCCCceE
Q 027992 85 AAPDAVF 91 (215)
Q Consensus 85 ~~~~~~i 91 (215)
++.+.+.
T Consensus 108 ~~~~~v~ 114 (183)
T cd06438 108 AGARVVQ 114 (183)
T ss_pred hCCCeeE
Confidence 6555433
No 88
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=95.10 E-value=0.33 Score=34.87 Aligned_cols=62 Identities=27% Similarity=0.375 Sum_probs=39.9
Q ss_pred HHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEE
Q 027992 27 QQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 92 (215)
Q Consensus 27 ~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~ 92 (215)
...++.++... . ++. .|+.+++......++-|+++=.|.|.+++++|.++.+.+..+ +.+++
T Consensus 31 ~~~~~~~~~Q~-g--~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~~~L~~~-d~Vlg 93 (122)
T PF09837_consen 31 LPSGFSFFPQQ-G--GDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAFEALQRH-DVVLG 93 (122)
T ss_dssp H-TTSEEEE---S--SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHHHHTTT--SEEEE
T ss_pred cCCCCEEeecC-C--CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHhccC-CEEEe
Confidence 34466665432 1 344 478888877655678999999999999999999999998653 66555
No 89
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=94.47 E-value=0.57 Score=36.82 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=58.7
Q ss_pred ccCCCCcEEEEcC--cHHHHHHHHHcC--------CeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCH
Q 027992 6 HSFLFCGLVVATD--DEKIAECCQQFG--------ADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEP 73 (215)
Q Consensus 6 ~~~~~d~ivV~td--~~~i~~~~~~~g--------~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~ 73 (215)
...++++|+|+|. .+.+.+...+.. ..+ +....+. .+++ .++..... ..-.+.++++.||. +..
T Consensus 42 ~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~al~~~~~~-~~~~~~flv~~gD~--i~~ 117 (217)
T cd04197 42 ALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDC-RSLGDALRDLDAK-GLIRGDFILVSGDV--VSN 117 (217)
T ss_pred HHCCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEEEEeCCCc-CccchHHHHHhhc-cccCCCEEEEeCCe--eec
Confidence 3457999999995 577777766531 223 2222221 2222 22211111 10124478999996 456
Q ss_pred HHHHHHHHHHHcC----CCceEEeecccCCCCc---cCCCCceEEEEcCCCceecccCC
Q 027992 74 EIIDGVVKALQAA----PDAVFSTAVTSLKPED---AFDPNRVKCVVDNHGYAIYFSRG 125 (215)
Q Consensus 74 ~~i~~~i~~~~~~----~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~ 125 (215)
..+.++++.+++. .++.+++...+..... ..+++.+..+.+++|.+..|.+.
T Consensus 118 ~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ek 176 (217)
T cd04197 118 IDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEEL 176 (217)
T ss_pred cCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEecc
Confidence 7899999988652 3555554433432111 01112233333344677666544
No 90
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=94.38 E-value=0.54 Score=44.01 Aligned_cols=66 Identities=17% Similarity=0.351 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 027992 20 EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 88 (215)
Q Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~ 88 (215)
++++++++++|+..+.|+....+....+.+|++.. +.|+++++++|.=. +++.+.+++..|.++++
T Consensus 193 ~~~~~l~~~~~v~yi~r~~n~~~KAgnLN~al~~a--~gd~Il~lDAD~v~-~pd~L~~~v~~f~~dp~ 258 (713)
T TIGR03030 193 EELKEFCRKLGVNYITRPRNVHAKAGNINNALKHT--DGELILIFDADHVP-TRDFLQRTVGWFVEDPK 258 (713)
T ss_pred HHHHHHHHHcCcEEEECCCCCCCChHHHHHHHHhc--CCCEEEEECCCCCc-ChhHHHHHHHHHHhCCC
Confidence 45678888899988777755323344678888876 56999999999975 79999999999965544
No 91
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=93.97 E-value=0.69 Score=44.02 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=56.5
Q ss_pred cEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 027992 12 GLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 88 (215)
Q Consensus 12 ~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~ 88 (215)
+|+|+-| .++..++++++|+.++.|+....+....+.+|++.. ..|+++++++|.= .+++.+++++..+.++++
T Consensus 294 EViVVDDgS~D~t~~la~~~~v~yI~R~~n~~gKAGnLN~aL~~a--~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP~ 369 (852)
T PRK11498 294 NIWILDDGGREEFRQFAQEVGVKYIARPTHEHAKAGNINNALKYA--KGEFVAIFDCDHV-PTRSFLQMTMGWFLKDKK 369 (852)
T ss_pred EEEEEeCCCChHHHHHHHHCCcEEEEeCCCCcchHHHHHHHHHhC--CCCEEEEECCCCC-CChHHHHHHHHHHHhCCC
Confidence 5777765 478889999999988777644322234578888876 6799999999996 589999999998865555
No 92
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=93.96 E-value=0.78 Score=36.04 Aligned_cols=73 Identities=19% Similarity=0.378 Sum_probs=48.1
Q ss_pred CcEEEEcCc-------HHHHHHHHHcCCeE-EeCCCCCCCc-hHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 11 CGLVVATDD-------EKIAECCQQFGADV-IMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 11 d~ivV~td~-------~~i~~~~~~~g~~v-~~~~~~~~~~-~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
.+|+|+-++ +.+++++++++..+ +.+.....|+ ...+..|++.+....|+++++++|. .++++.|.+++.
T Consensus 29 ~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~~lD~D~-~~~~~~l~~l~~ 107 (236)
T cd06435 29 FEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAPDAEIIAVIDADY-QVEPDWLKRLVP 107 (236)
T ss_pred cEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEEEEcCCC-CcCHHHHHHHHH
Confidence 467776632 22446666666444 2322222243 4456677777644579999999997 789999999999
Q ss_pred HHH
Q 027992 82 ALQ 84 (215)
Q Consensus 82 ~~~ 84 (215)
.+.
T Consensus 108 ~~~ 110 (236)
T cd06435 108 IFD 110 (236)
T ss_pred Hhc
Confidence 985
No 93
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=93.50 E-value=0.41 Score=37.11 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=51.0
Q ss_pred ccCCCCcEEEEcC--cHHHHHHHHH---cC-------CeEEeC----CCCCCCch-HHHHHHHHHhc-CCCCEEEEecCC
Q 027992 6 HSFLFCGLVVATD--DEKIAECCQQ---FG-------ADVIMT----SESCRNGT-ERCNEALQKLE-KKYDIVVNIQGD 67 (215)
Q Consensus 6 ~~~~~d~ivV~td--~~~i~~~~~~---~g-------~~v~~~----~~~~~~~~-~~i~~~l~~~~-~~~d~v~~~~~d 67 (215)
....+++|+|++. .+++.+.... +| +.++.. ..+..-|+ .+++.|...+. .+.+.++++.||
T Consensus 41 ~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD 120 (200)
T cd02508 41 VNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGD 120 (200)
T ss_pred HHCCCCEEEEEeCCChHHHHHHHhCCCcccCCCCCCCEEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3357899999994 4667766543 22 233321 11222344 46788877773 234789999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 027992 68 EPLIEPEIIDGVVKALQAA 86 (215)
Q Consensus 68 ~Pli~~~~i~~~i~~~~~~ 86 (215)
. +...++.++++.++++
T Consensus 121 ~--v~~~~~~~~l~~~~~~ 137 (200)
T cd02508 121 H--IYNMDYREMLDFHIES 137 (200)
T ss_pred E--EEecCHHHHHHHHHHc
Confidence 9 6778899999988653
No 94
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=93.48 E-value=1 Score=35.16 Aligned_cols=74 Identities=15% Similarity=0.252 Sum_probs=51.0
Q ss_pred cEEEEcC--cHHHHHHHHHcCC----eEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 12 GLVVATD--DEKIAECCQQFGA----DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 12 ~ivV~td--~~~i~~~~~~~g~----~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
+|+|+-| ++...+++++++. .++.++....+....+..|++.. ..|+++++++|.=+ .++.+.++++.+.+
T Consensus 35 eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~a--~~d~i~~lD~D~~~-~~~~l~~l~~~~~~ 111 (234)
T cd06421 35 RVYVLDDGRRPELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNALAHT--TGDFVAILDADHVP-TPDFLRRTLGYFLD 111 (234)
T ss_pred EEEEEcCCCchhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHHHhC--CCCEEEEEccccCc-CccHHHHHHHHHhc
Confidence 6777764 3566677777765 45544433222233467777765 67999999999655 88999999999976
Q ss_pred CCC
Q 027992 86 APD 88 (215)
Q Consensus 86 ~~~ 88 (215)
+++
T Consensus 112 ~~~ 114 (234)
T cd06421 112 DPK 114 (234)
T ss_pred CCC
Confidence 444
No 95
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=93.47 E-value=1.6 Score=34.53 Aligned_cols=72 Identities=24% Similarity=0.358 Sum_probs=51.8
Q ss_pred CcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 027992 11 CGLVVATD--DEKIAECCQQFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 87 (215)
Q Consensus 11 d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~ 87 (215)
++|||+-+ .+...++++.++++++.. .. .|.+ ....|+..+ ..|+|+++++|. .++++.+..+.+.+..++
T Consensus 27 ~eiivvD~gStD~t~~i~~~~~~~v~~~-~~--~g~~~~~n~~~~~a--~~d~vl~lDaD~-~~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 27 DEIIVVDSGSTDRTVEIAKEYGAKVYQR-WW--DGFGAQRNFALELA--TNDWVLSLDADE-RLTPELADEILALLATDD 100 (229)
T ss_pred CEEEEEeCCCCccHHHHHHHcCCEEEEC-CC--CChHHHHHHHHHhC--CCCEEEEEeCCc-CcCHHHHHHHHHHHhCCC
Confidence 67777764 245677888899988755 22 3444 345566665 568999999997 469999999999887654
Q ss_pred C
Q 027992 88 D 88 (215)
Q Consensus 88 ~ 88 (215)
.
T Consensus 101 ~ 101 (229)
T cd02511 101 Y 101 (229)
T ss_pred C
Confidence 3
No 96
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=93.31 E-value=0.58 Score=36.74 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=51.9
Q ss_pred cCCCCcEEEEcCc---HHHHHHHHHc------CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992 7 SFLFCGLVVATDD---EKIAECCQQF------GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 7 ~~~~d~ivV~td~---~~i~~~~~~~------g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i 76 (215)
...+++|+|++.. +.+.+..+++ +..++........|++ +++++...+ . +.++++.|| +++...+
T Consensus 43 ~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i--~-~d~lv~~~D--~i~~~~l 117 (214)
T cd04198 43 KAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKI--K-KDFLVLSCD--LITDLPL 117 (214)
T ss_pred HCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHHHHhhc--C-CCEEEEeCc--cccccCH
Confidence 3568999999964 3466666654 2223222222234544 567776665 2 348888999 7899999
Q ss_pred HHHHHHHHcCCCceEEee
Q 027992 77 DGVVKALQAAPDAVFSTA 94 (215)
Q Consensus 77 ~~~i~~~~~~~~~~i~~~ 94 (215)
..+++.++.+ ++.+++.
T Consensus 118 ~~~l~~h~~~-~~~~t~~ 134 (214)
T cd04198 118 IELVDLHRSH-DASLTVL 134 (214)
T ss_pred HHHHHHHhcc-CCcEEEE
Confidence 9999998764 4444443
No 97
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=92.93 E-value=1.5 Score=33.33 Aligned_cols=77 Identities=18% Similarity=0.336 Sum_probs=50.3
Q ss_pred CcEEEEcCc---HHHHH----HHHHcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 11 CGLVVATDD---EKIAE----CCQQFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 11 d~ivV~td~---~~i~~----~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
.+|+|+-|+ +...+ +++++++.++..+.. .|.. ....|+... ..|+++++++|. ...+..+..+++.
T Consensus 30 ~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n--~G~~~a~N~g~~~a--~gd~i~~lD~Dd-~~~~~~l~~~~~~ 104 (201)
T cd04195 30 DEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKN--RGLGKALNEGLKHC--TYDWVARMDTDD-ISLPDRFEKQLDF 104 (201)
T ss_pred cEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCcc--ccHHHHHHHHHHhc--CCCEEEEeCCcc-ccCcHHHHHHHHH
Confidence 567766542 23333 344455555555544 3443 456676665 579999999998 6789999999999
Q ss_pred HHcCCCceEE
Q 027992 83 LQAAPDAVFS 92 (215)
Q Consensus 83 ~~~~~~~~i~ 92 (215)
+.++++..+.
T Consensus 105 ~~~~~~~~~~ 114 (201)
T cd04195 105 IEKNPEIDIV 114 (201)
T ss_pred HHhCCCeEEE
Confidence 9765555444
No 98
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=92.56 E-value=1.2 Score=28.93 Aligned_cols=66 Identities=30% Similarity=0.367 Sum_probs=41.0
Q ss_pred CccccccCCCCcEEEEc---CcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCC
Q 027992 1 MLVMCHSFLFCGLVVAT---DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEP 69 (215)
Q Consensus 1 ~~~a~~~~~~d~ivV~t---d~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~P 69 (215)
|+.+.......-.++++ |.+-+..+++.+|+.++..+ .-.+|...++..++.+....++ .+.+|=|
T Consensus 1 m~p~~~~~~~~~~~lvS~s~DGe~ia~~~~~~G~~~iRGS-s~rgg~~Alr~~~~~lk~G~~~--~itpDGP 69 (74)
T PF04028_consen 1 MMPFLWRRRRKIAALVSRSRDGELIARVLERFGFRTIRGS-SSRGGARALREMLRALKEGYSI--AITPDGP 69 (74)
T ss_pred CCCcEEcCCCCEEEEEccCcCHHHHHHHHHHcCCCeEEeC-CCCcHHHHHHHHHHHHHCCCeE--EEeCCCC
Confidence 34444423333344455 45777899999999998765 3346777788888888544444 4455544
No 99
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=91.65 E-value=2.3 Score=35.55 Aligned_cols=79 Identities=27% Similarity=0.330 Sum_probs=52.6
Q ss_pred CCCcEEEEcC--cHHHHHHHHHcCCeEEeCCC-----CCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 9 LFCGLVVATD--DEKIAECCQQFGADVIMTSE-----SCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 9 ~~d~ivV~td--~~~i~~~~~~~g~~v~~~~~-----~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
...+|||+-| .+...+++++++++++.+.. ....|.+ .+..|+... ..|+++++++|.--.+++.|.+++
T Consensus 61 ~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~~g~~~a--~gd~vv~lDaD~~~~~p~~l~~l~ 138 (306)
T PRK13915 61 LVDELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKGEALWRSLAAT--TGDIVVFVDADLINFDPMFVPGLL 138 (306)
T ss_pred CCcEEEEEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHHHHHHHHHHhc--CCCEEEEEeCccccCCHHHHHHHH
Confidence 3467877764 35566778888876532211 1113443 456677654 569999999999888999999999
Q ss_pred HHHHcCCCc
Q 027992 81 KALQAAPDA 89 (215)
Q Consensus 81 ~~~~~~~~~ 89 (215)
+.+..+++.
T Consensus 139 ~~l~~~~~~ 147 (306)
T PRK13915 139 GPLLTDPGV 147 (306)
T ss_pred HHHHhCCCc
Confidence 988643343
No 100
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=91.40 E-value=4.2 Score=30.38 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEE
Q 027992 45 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 92 (215)
Q Consensus 45 ~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~ 92 (215)
.....|+... ..|+++++++|..+ .++.+.++++.+..+.+.+++
T Consensus 70 ~a~n~g~~~a--~~d~i~~~D~D~~~-~~~~l~~l~~~~~~~~~~v~g 114 (181)
T cd04187 70 AALLAGLDHA--RGDAVITMDADLQD-PPELIPEMLAKWEEGYDVVYG 114 (181)
T ss_pred HHHHHHHHhc--CCCEEEEEeCCCCC-CHHHHHHHHHHHhCCCcEEEE
Confidence 3456777766 45999999999996 899999999987555454444
No 101
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=90.95 E-value=3.3 Score=34.87 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=48.5
Q ss_pred cEEEEcCc-----HH-HHHHHHHcCCeE--EeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 12 GLVVATDD-----EK-IAECCQQFGADV--IMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 12 ~ivV~td~-----~~-i~~~~~~~g~~v--~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
+|+|+-|. .+ +.+.+++.+..+ +..... .|. ..+..|+... ..|+++++++|.- ..|+.|.++++.
T Consensus 40 EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n--~G~~~A~~~G~~~A--~gd~vv~~DaD~q-~~p~~i~~l~~~ 114 (325)
T PRK10714 40 EILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRN--YGQHSAIMAGFSHV--TGDLIITLDADLQ-NPPEEIPRLVAK 114 (325)
T ss_pred EEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCC--CCHHHHHHHHHHhC--CCCEEEEECCCCC-CCHHHHHHHHHH
Confidence 67776541 22 233344445554 222322 344 3567888776 5799999999998 599999999999
Q ss_pred HHcCCCceE
Q 027992 83 LQAAPDAVF 91 (215)
Q Consensus 83 ~~~~~~~~i 91 (215)
+.++.|.+.
T Consensus 115 ~~~~~DvV~ 123 (325)
T PRK10714 115 ADEGYDVVG 123 (325)
T ss_pred HHhhCCEEE
Confidence 976556443
No 102
>PRK11204 N-glycosyltransferase; Provisional
Probab=90.76 E-value=3.4 Score=35.81 Aligned_cols=73 Identities=21% Similarity=0.351 Sum_probs=47.2
Q ss_pred CcEEEEcCc--HHHH----HHHHHcC-CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 11 CGLVVATDD--EKIA----ECCQQFG-ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 11 d~ivV~td~--~~i~----~~~~~~g-~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
.+|+|+.|+ ++.. +.++++. +.++.++.. .|.+ ....|++.. ..|+++++++|. ..+++.+.++++.
T Consensus 84 ~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n--~Gka~aln~g~~~a--~~d~i~~lDaD~-~~~~d~L~~l~~~ 158 (420)
T PRK11204 84 YEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAEN--QGKANALNTGAAAA--RSEYLVCIDGDA-LLDPDAAAYMVEH 158 (420)
T ss_pred eEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCC--CCHHHHHHHHHHHc--CCCEEEEECCCC-CCChhHHHHHHHH
Confidence 367776642 2233 3344433 445543434 3443 566777765 679999999999 5599999999999
Q ss_pred HHcCCC
Q 027992 83 LQAAPD 88 (215)
Q Consensus 83 ~~~~~~ 88 (215)
+.++++
T Consensus 159 ~~~~~~ 164 (420)
T PRK11204 159 FLHNPR 164 (420)
T ss_pred HHhCCC
Confidence 965444
No 103
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=90.61 E-value=6.3 Score=35.04 Aligned_cols=87 Identities=15% Similarity=0.189 Sum_probs=51.7
Q ss_pred CCCcEEEEcCcH---HHHHHHHHcCCe---EEeCCCCCCCchH-HHHHHHHHhc---CCCCEEEEecCCCCCCCHHHHHH
Q 027992 9 LFCGLVVATDDE---KIAECCQQFGAD---VIMTSESCRNGTE-RCNEALQKLE---KKYDIVVNIQGDEPLIEPEIIDG 78 (215)
Q Consensus 9 ~~d~ivV~td~~---~i~~~~~~~g~~---v~~~~~~~~~~~~-~i~~~l~~~~---~~~d~v~~~~~d~Pli~~~~i~~ 78 (215)
.+++++|+|... .+.+.+..+|.. ++..+.. .|++ .+..+...+. ...+.++++.+|.|+..+..+.+
T Consensus 47 ~~~~iviv~~~~~~~~~~~~l~~~~~~~~~~i~Ep~~--~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~ 124 (468)
T TIGR01479 47 PCSSPLVICNEEHRFIVAEQLREIGKLASNIILEPVG--RNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQA 124 (468)
T ss_pred CCcCcEEecCHHHHHHHHHHHHHcCCCcceEEecccc--cCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHH
Confidence 578888888643 345666666642 4444433 3443 3333333331 23457999999999998888888
Q ss_pred HHHHHH--cCCCceEEeeccc
Q 027992 79 VVKALQ--AAPDAVFSTAVTS 97 (215)
Q Consensus 79 ~i~~~~--~~~~~~i~~~~~~ 97 (215)
+++.+. ...++++++...+
T Consensus 125 ~l~~~~~~a~~~~lvtlgi~p 145 (468)
T TIGR01479 125 AVKLAMPAAAEGKLVTFGIVP 145 (468)
T ss_pred HHHHHHHHHhcCCEEEEEecC
Confidence 888652 1225555544333
No 104
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=90.16 E-value=12 Score=32.47 Aligned_cols=185 Identities=17% Similarity=0.177 Sum_probs=98.4
Q ss_pred cCCCCcEEEEcCcHHH--HHHHHH---c-------CCeEEeC-----CCCCCCchH-HHHHHHHHh-cCCCCEEEEecCC
Q 027992 7 SFLFCGLVVATDDEKI--AECCQQ---F-------GADVIMT-----SESCRNGTE-RCNEALQKL-EKKYDIVVNIQGD 67 (215)
Q Consensus 7 ~~~~d~ivV~td~~~i--~~~~~~---~-------g~~v~~~-----~~~~~~~~~-~i~~~l~~~-~~~~d~v~~~~~d 67 (215)
...|.+|.|.|..... -+.... + |+.++.. .+.|-.|++ ++++=+..+ ..+.|+++++-||
T Consensus 49 NSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgD 128 (393)
T COG0448 49 NSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGD 128 (393)
T ss_pred ccCCCeEEEEeccchhHHHHHhhCCCccccccccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCC
Confidence 3568999999965443 222221 1 1222221 111333443 454433333 3578999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeee
Q 027992 68 EPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 147 (215)
Q Consensus 68 ~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~ 147 (215)
. +-.=+.+++++...+. ++.+++.+.++...+..... +- -.+++|++..|.+.+ ... .++ -....++.
T Consensus 129 h--IYkmDy~~ml~~H~~~-gadiTv~~~~Vp~~eas~fG-im-~~D~~~~i~~F~eKp--~~~----~~~-~~laSMgi 196 (393)
T COG0448 129 H--IYKMDYSDMLDFHIES-GADVTVAVKEVPREEASRFG-VM-NVDENGRIIEFVEKP--ADG----PPS-NSLASMGI 196 (393)
T ss_pred E--EEecCHHHHHHHHHHc-CCCEEEEEEECChHhhhhcC-ce-EECCCCCEEeeeecc--CcC----Ccc-cceeeeee
Confidence 6 4456788999988642 34445445555432221112 22 237888887665432 110 011 02467899
Q ss_pred eeechHHHhhC-cCCC---CCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHH
Q 027992 148 QSYDSNFLKIY-PGLH---PTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIE 206 (215)
Q Consensus 148 ~~~~~~~l~~~-~~~~---~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae 206 (215)
|+|..++|.++ ..-. .+...... +..+ .++.|. +..++-..---||.|-+-+..|-
T Consensus 197 YIf~~~~L~~~L~~~~~~~~~~~Dfgk--diIp~~~~~~~-v~AY~f~gYw~dVgTi~syy~aN 257 (393)
T COG0448 197 YIFNTDLLKELLEEDAKDPNSSHDFGK--DIIPKLLERGK-VYAYEFSGYWRDVGTIDSYYEAN 257 (393)
T ss_pred EEEcHHHHHHHHHHHhcccCccccchH--HHHHHHHhcCC-EEEEeccchhhhcccHHHHHHhh
Confidence 99999887653 2111 11111111 2222 334555 77777655667899988887774
No 105
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=89.53 E-value=2.2 Score=30.76 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=48.0
Q ss_pred CCCcEEEEcCcH--HHHHHHHHc-----CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 9 LFCGLVVATDDE--KIAECCQQF-----GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 9 ~~d~ivV~td~~--~i~~~~~~~-----g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
...+|+|+-|.. +..++++++ +++++.++... |.. ....|++.. ..++++++++|.=+... .+..++
T Consensus 26 ~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~--g~~~~~n~~~~~a--~~~~i~~ld~D~~~~~~-~l~~l~ 100 (169)
T PF00535_consen 26 PDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENL--GFSAARNRGIKHA--KGEYILFLDDDDIISPD-WLEELV 100 (169)
T ss_dssp CEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCS--HHHHHHHHHHHH----SSEEEEEETTEEE-TT-HHHHHH
T ss_pred CCEEEEEeccccccccccccccccccccccccccccccc--ccccccccccccc--ceeEEEEeCCCceEcHH-HHHHHH
Confidence 446777777643 555666654 45666666553 544 466777776 45699999999655444 999999
Q ss_pred HHHHcC
Q 027992 81 KALQAA 86 (215)
Q Consensus 81 ~~~~~~ 86 (215)
+.+.++
T Consensus 101 ~~~~~~ 106 (169)
T PF00535_consen 101 EALEKN 106 (169)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999763
No 106
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=89.52 E-value=3.6 Score=32.56 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=46.9
Q ss_pred cEEEEcC--cHHHHHHHHHcC---CeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 12 GLVVATD--DEKIAECCQQFG---ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 12 ~ivV~td--~~~i~~~~~~~g---~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
+|+|+-| ++...+++++++ +.++..+.. .|.......|++.. ..|+++++++|.-+ .++.+.++++.+..
T Consensus 62 eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~~~-~g~~~a~n~gi~~a--~~d~i~~lD~D~~~-~~~~l~~l~~~~~~ 136 (251)
T cd06439 62 EIIVVSDGSTDGTAEIAREYADKGVKLLRFPER-RGKAAALNRALALA--TGEIVVFTDANALL-DPDALRLLVRHFAD 136 (251)
T ss_pred EEEEEECCCCccHHHHHHHHhhCcEEEEEcCCC-CChHHHHHHHHHHc--CCCEEEEEccccCc-CHHHHHHHHHHhcC
Confidence 5777664 244555666654 445544433 22233456677766 45999999999988 59999999999863
No 107
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=88.52 E-value=5.4 Score=31.21 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=43.6
Q ss_pred CcEEEEcC--cHHHHHHHHHcC-----CeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 11 CGLVVATD--DEKIAECCQQFG-----ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 11 d~ivV~td--~~~i~~~~~~~g-----~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
.+|+|+-+ .++..+.++.++ +.++..+ .. +.......|++.. ..|+++++++|. ..++..+.++++.+
T Consensus 32 ~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~-~~-~~~~a~N~g~~~a--~~d~v~~lD~D~-~~~~~~l~~~~~~~ 106 (249)
T cd02525 32 IEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNP-KR-IQSAGLNIGIRNS--RGDIIIRVDAHA-VYPKDYILELVEAL 106 (249)
T ss_pred cEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCC-CC-CchHHHHHHHHHh--CCCEEEEECCCc-cCCHHHHHHHHHHH
Confidence 36666653 233344444433 3334332 21 2233456666665 679999999998 67999999999887
Q ss_pred Hc
Q 027992 84 QA 85 (215)
Q Consensus 84 ~~ 85 (215)
..
T Consensus 107 ~~ 108 (249)
T cd02525 107 KR 108 (249)
T ss_pred hc
Confidence 64
No 108
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=88.27 E-value=6.5 Score=28.25 Aligned_cols=74 Identities=27% Similarity=0.422 Sum_probs=45.2
Q ss_pred CCcEEEEcC--cHHHHHHHHHcCC------eEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 10 FCGLVVATD--DEKIAECCQQFGA------DVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 10 ~d~ivV~td--~~~i~~~~~~~g~------~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
..+|+|+-+ ++...+.+.++.. .++..+.. .|.. ....|++.. ..|+++++++|. .+.++.|..++
T Consensus 26 ~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~n~~~~~~--~~~~i~~~D~D~-~~~~~~l~~~~ 100 (180)
T cd06423 26 KLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKEN--GGKAGALNAGLRHA--KGDIVVVLDADT-ILEPDALKRLV 100 (180)
T ss_pred ceEEEEEeCCCccchHHHHHHHhccccceEEEEEeccc--CCchHHHHHHHHhc--CCCEEEEECCCC-CcChHHHHHHH
Confidence 346777664 2333444444432 22333333 3444 455677765 679999999998 55899999997
Q ss_pred HHHHcCCC
Q 027992 81 KALQAAPD 88 (215)
Q Consensus 81 ~~~~~~~~ 88 (215)
..+..+++
T Consensus 101 ~~~~~~~~ 108 (180)
T cd06423 101 VPFFADPK 108 (180)
T ss_pred HHhccCCC
Confidence 77754444
No 109
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.64 E-value=10 Score=29.14 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992 46 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 86 (215)
Q Consensus 46 ~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~ 86 (215)
.+..|+... ..|+++++++|. .+.++.|+++++.+...
T Consensus 73 a~n~g~~~~--~~d~i~~~D~D~-~~~~~~l~~l~~~~~~~ 110 (229)
T cd04192 73 ALTTAIKAA--KGDWIVTTDADC-VVPSNWLLTFVAFIQKE 110 (229)
T ss_pred HHHHHHHHh--cCCEEEEECCCc-ccCHHHHHHHHHHhhcC
Confidence 455666655 579999999999 66899999999988653
No 110
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=85.43 E-value=12 Score=29.66 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 46 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 46 ~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
....|+... ..|+++++++|.- ..++.|.++++.+..
T Consensus 84 a~n~g~~~a--~g~~i~~lD~D~~-~~~~~l~~l~~~~~~ 120 (243)
T PLN02726 84 AYIHGLKHA--SGDFVVIMDADLS-HHPKYLPSFIKKQRE 120 (243)
T ss_pred HHHHHHHHc--CCCEEEEEcCCCC-CCHHHHHHHHHHHHh
Confidence 456677665 5689999999998 599999999998864
No 111
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.80 E-value=5.7 Score=31.17 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=41.6
Q ss_pred CcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCC-CCCCHH
Q 027992 18 DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE-PLIEPE 74 (215)
Q Consensus 18 d~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~-Pli~~~ 74 (215)
|.+-++.+++++|+.+++.+.+ -+|..++++.+.++....++++..++-. |..+..
T Consensus 79 DGEliA~~l~kfG~~~IRGSs~-Kgg~~Alr~l~k~Lk~G~~i~itpDgPkGp~~~~~ 135 (214)
T COG2121 79 DGELIARLLEKFGLRVIRGSSN-KGGISALRALLKALKQGKSIAITPDGPKGPVHKIG 135 (214)
T ss_pred CHHHHHHHHHHcCceEEeccCC-cchHHHHHHHHHHHhCCCcEEEcCCCCCCCceecc
Confidence 5677889999999999876643 2556678888888877778887776666 555543
No 112
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=84.29 E-value=22 Score=29.35 Aligned_cols=161 Identities=11% Similarity=0.041 Sum_probs=88.0
Q ss_pred CCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCC-HHHHHHHHHHHHcCCCceEEeecccCCCCccCCC
Q 027992 30 GADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP 106 (215)
Q Consensus 30 g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~-~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~ 106 (215)
++++ +.|..+- -|.. .+.+|=..+ ..+-+.++.||-=+.+ +..+.++++.+.+...|++++..++.. + -+.
T Consensus 96 ~~~i~~vRQ~e~-~GLGhAVl~A~~~v--g~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~ev~~e--~-v~k 169 (291)
T COG1210 96 LVTISFVRQKEP-LGLGHAVLCAKPFV--GDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVEEVPPE--D-VSK 169 (291)
T ss_pred CceEEEEecCCC-CcchhHHHhhhhhc--CCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEEECCHH--H-Ccc
Confidence 3444 4455332 4544 456665555 3456777778877666 678889999998766788887655421 1 111
Q ss_pred CceEEEE----cCCC--ceecccCCCCCCCCCCCCCCCCCe-eEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhhh
Q 027992 107 NRVKCVV----DNHG--YAIYFSRGLIPYNKSGKVNPQFPY-LLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLKV 177 (215)
Q Consensus 107 ~~~~~~~----~~~g--~~~~~~~~~ip~~~~~~~~q~~p~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~~ 177 (215)
.. ++. .++| .+..+-+. | ...+.|. ....+.|++..+.+.....+..+. ..|- | +....
T Consensus 170 YG--vi~~g~~~~~~~~~v~~~VEK--P------~~~~APSnlai~GRYil~p~IFd~L~~~~~G~--ggEiQLTDai~~ 237 (291)
T COG1210 170 YG--VIDPGEPVEKGVYKVKGMVEK--P------KPEEAPSNLAIVGRYVLTPEIFDILEETKPGA--GGEIQLTDAIKK 237 (291)
T ss_pred cc--eEecCccccCCeEEEEEEEEC--C------CCCCCCcceeeeeeeecCHHHHHHHhhCCCCC--CCEeeHHHHHHH
Confidence 22 221 1122 11111111 1 1234553 456667999776544333332221 1222 2 33443
Q ss_pred hhcCCeeEEEEecCCCCCCCCHHHHHHHHHH
Q 027992 178 LENGYKMKVIKVDHEAHGVDAPEDVEKIESF 208 (215)
Q Consensus 178 ~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~i 208 (215)
+..-..+..+......+|+-++..|-.|-.-
T Consensus 238 L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~ 268 (291)
T COG1210 238 LLKKEPVLAYVFEGKRYDCGSKLGYIKANVE 268 (291)
T ss_pred HHhhCcEEEEEecccEEccCCcccHHHHHHH
Confidence 3233677777777889999999999777433
No 113
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=84.23 E-value=17 Score=27.90 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=47.9
Q ss_pred CCcEEEEcCc--HH----HHHHHHHcCC--eEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 10 FCGLVVATDD--EK----IAECCQQFGA--DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 10 ~d~ivV~td~--~~----i~~~~~~~g~--~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
..+|+|+-|. +. ++++.++++. .++..+... |-...+..|++.. ..|+++++++|.- ..++.+.++++
T Consensus 30 ~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~~a~~~g~~~a--~gd~i~~ld~D~~-~~~~~l~~l~~ 105 (211)
T cd04188 30 SYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNR-GKGGAVRAGMLAA--RGDYILFADADLA-TPFEELEKLEE 105 (211)
T ss_pred CEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCC-CcHHHHHHHHHHh--cCCEEEEEeCCCC-CCHHHHHHHHH
Confidence 3467777532 22 3344444553 344444332 3334567787776 4599999999986 67999999999
Q ss_pred HHHc-CCCceEE
Q 027992 82 ALQA-APDAVFS 92 (215)
Q Consensus 82 ~~~~-~~~~~i~ 92 (215)
.+.. ..+.+++
T Consensus 106 ~~~~~~~~~v~g 117 (211)
T cd04188 106 ALKTSGYDIAIG 117 (211)
T ss_pred HHhccCCcEEEE
Confidence 8643 3344333
No 114
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=83.77 E-value=17 Score=27.61 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 47 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 47 i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
+..|++.. ..|+++++++|.- +++..|.++++.+.
T Consensus 78 ~n~g~~~a--~~d~i~~~D~D~~-~~~~~l~~l~~~~~ 112 (196)
T cd02520 78 LIKGYEEA--RYDILVISDSDIS-VPPDYLRRMVAPLM 112 (196)
T ss_pred HHHHHHhC--CCCEEEEECCCce-EChhHHHHHHHHhh
Confidence 45666654 5799999999985 59999999999874
No 115
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=83.22 E-value=13 Score=25.85 Aligned_cols=75 Identities=20% Similarity=0.369 Sum_probs=43.8
Q ss_pred CCcEEEEcCc--HHHHHHHHHcC-----CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 10 FCGLVVATDD--EKIAECCQQFG-----ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 10 ~d~ivV~td~--~~i~~~~~~~g-----~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
..+|+|++++ ++..+...+.. ...+..+.. .|.. ....++... ..|.++++++|..+ .++.+..++.
T Consensus 26 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~--~~d~v~~~d~D~~~-~~~~~~~~~~ 100 (156)
T cd00761 26 NFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEEN--QGLAAARNAGLKAA--RGEYILFLDADDLL-LPDWLERLVA 100 (156)
T ss_pred ceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCC--CChHHHHHHHHHHh--cCCEEEEECCCCcc-CccHHHHHHH
Confidence 5677777753 44444444432 222333322 3443 455666665 67999999999986 5667777655
Q ss_pred HHHcCCCc
Q 027992 82 ALQAAPDA 89 (215)
Q Consensus 82 ~~~~~~~~ 89 (215)
.+..+.+.
T Consensus 101 ~~~~~~~~ 108 (156)
T cd00761 101 ELLADPEA 108 (156)
T ss_pred HHhcCCCc
Confidence 55443343
No 116
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=83.16 E-value=18 Score=31.83 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=46.0
Q ss_pred CcEEEEcC--cH----HHHHHHHHc-CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 11 CGLVVATD--DE----KIAECCQQF-GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 11 d~ivV~td--~~----~i~~~~~~~-g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
.+|+|+.| ++ .+.+.++++ .+.++..... .|.+ ....|+... ..|+++++++|. ..+++.+.++++.
T Consensus 105 ~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n--~Gka~AlN~gl~~a--~~d~iv~lDAD~-~~~~d~L~~lv~~ 179 (444)
T PRK14583 105 IEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAHN--QGKAIALRMGAAAA--RSEYLVCIDGDA-LLDKNAVPYLVAP 179 (444)
T ss_pred eEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCCC--CCHHHHHHHHHHhC--CCCEEEEECCCC-CcCHHHHHHHHHH
Confidence 36777754 22 233344444 3455443323 3444 456666654 679999999998 5699999999998
Q ss_pred HHcCCC
Q 027992 83 LQAAPD 88 (215)
Q Consensus 83 ~~~~~~ 88 (215)
+.++++
T Consensus 180 ~~~~~~ 185 (444)
T PRK14583 180 LIANPR 185 (444)
T ss_pred HHhCCC
Confidence 865444
No 117
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=83.09 E-value=18 Score=27.30 Aligned_cols=45 Identities=33% Similarity=0.458 Sum_probs=33.5
Q ss_pred CchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCc
Q 027992 42 NGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 89 (215)
Q Consensus 42 ~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~ 89 (215)
.|.. ....|++.. ..|+++++++|. ..+++.++.+++.+..+++.
T Consensus 69 ~g~~~a~n~g~~~a--~~d~i~~ld~D~-~~~~~~l~~~~~~~~~~~~~ 114 (202)
T cd04184 69 GGISAATNSALELA--TGEFVALLDHDD-ELAPHALYEVVKALNEHPDA 114 (202)
T ss_pred CCHHHHHHHHHHhh--cCCEEEEECCCC-cCChHHHHHHHHHHHhCCCC
Confidence 4544 355677665 569999999999 66999999999998443443
No 118
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=82.99 E-value=14 Score=30.38 Aligned_cols=57 Identities=9% Similarity=0.112 Sum_probs=40.2
Q ss_pred CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceE
Q 027992 30 GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 91 (215)
Q Consensus 30 g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i 91 (215)
.++++..+.. .|.+ ....|++.. ..|+++++++|.=+ ++..|+++++.+..++..++
T Consensus 59 ~v~vi~~~~n--~G~~~a~N~g~~~A--~gd~i~fLD~D~~~-~~~wL~~ll~~l~~~~~~~v 116 (299)
T cd02510 59 KVKVLRLKKR--EGLIRARIAGARAA--TGDVLVFLDSHCEV-NVGWLEPLLARIAENRKTVV 116 (299)
T ss_pred cEEEEEcCCC--CCHHHHHHHHHHHc--cCCEEEEEeCCccc-CccHHHHHHHHHHhCCCeEE
Confidence 3555554433 4544 345566665 56999999999987 89999999999976555433
No 119
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.37 E-value=16 Score=26.26 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=48.0
Q ss_pred CCcEEEEcCc--HHHHHHHHHcC--CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 10 FCGLVVATDD--EKIAECCQQFG--ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 10 ~d~ivV~td~--~~i~~~~~~~g--~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
..+|+|+-+. +...+.+.+.. +.++..+.. .|.. ....|++.. ..|+++++++|.= .+++.+..+++.+.
T Consensus 26 ~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~~~--~g~~~a~n~~~~~~--~~~~i~~~D~D~~-~~~~~l~~~~~~~~ 100 (166)
T cd04186 26 DFEVIVVDNASTDGSVELLRELFPEVRLIRNGEN--LGFGAGNNQGIREA--KGDYVLLLNPDTV-VEPGALLELLDAAE 100 (166)
T ss_pred CeEEEEEECCCCchHHHHHHHhCCCeEEEecCCC--cChHHHhhHHHhhC--CCCEEEEECCCcE-ECccHHHHHHHHHH
Confidence 4567776653 33445555544 444444333 3443 455676665 6799999999985 57899999999876
Q ss_pred cCCCc
Q 027992 85 AAPDA 89 (215)
Q Consensus 85 ~~~~~ 89 (215)
++++.
T Consensus 101 ~~~~~ 105 (166)
T cd04186 101 QDPDV 105 (166)
T ss_pred hCCCc
Confidence 55443
No 120
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=81.92 E-value=21 Score=27.38 Aligned_cols=75 Identities=21% Similarity=0.362 Sum_probs=45.9
Q ss_pred CcEEEEcCc--HHHHH----HHHHcC-CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 11 CGLVVATDD--EKIAE----CCQQFG-ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 11 d~ivV~td~--~~i~~----~~~~~g-~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
-+|||+=|. +...+ +.++.+ +.++..... .|.+ +...|+... ..|+++++++|.-+ .++.+..+++.
T Consensus 28 ~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~~n--~G~~~a~n~g~~~a--~gd~i~~lD~D~~~-~~~~l~~l~~~ 102 (224)
T cd06442 28 YEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRPGK--RGLGSAYIEGFKAA--RGDVIVVMDADLSH-PPEYIPELLEA 102 (224)
T ss_pred eEEEEEeCCCCCChHHHHHHHHHhCCceEEEecCCC--CChHHHHHHHHHHc--CCCEEEEEECCCCC-CHHHHHHHHHH
Confidence 466666532 22233 333333 244444433 4544 456787776 45899999999765 79999999998
Q ss_pred HH-cCCCce
Q 027992 83 LQ-AAPDAV 90 (215)
Q Consensus 83 ~~-~~~~~~ 90 (215)
+. .+.+.+
T Consensus 103 ~~~~~~~~v 111 (224)
T cd06442 103 QLEGGADLV 111 (224)
T ss_pred HhcCCCCEE
Confidence 64 344433
No 121
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=80.81 E-value=25 Score=27.62 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=44.8
Q ss_pred cEEEEcC--cHHHHHHHHHcCC----eEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 12 GLVVATD--DEKIAECCQQFGA----DVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 12 ~ivV~td--~~~i~~~~~~~g~----~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
+|+|+-| ++...+++++++. .++..+..-..|.+ ....|+... ..|+|+++++|.= +.++.+.++++.+.
T Consensus 34 eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a--~gd~i~~~DaD~~-~~~~~l~~~~~~~~ 110 (241)
T cd06427 34 DVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFA--RGEYVVIYDAEDA-PDPDQLKKAVAAFA 110 (241)
T ss_pred EEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhc--CCCEEEEEcCCCC-CChHHHHHHHHHHH
Confidence 4555442 3445556666542 34322211112333 566777765 5699999999986 77999999999997
Q ss_pred cC
Q 027992 85 AA 86 (215)
Q Consensus 85 ~~ 86 (215)
++
T Consensus 111 ~~ 112 (241)
T cd06427 111 RL 112 (241)
T ss_pred hc
Confidence 53
No 122
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=80.81 E-value=23 Score=28.72 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=39.3
Q ss_pred CeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 027992 31 ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 88 (215)
Q Consensus 31 ~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~ 88 (215)
+.++.|+.......+.+.+++.......|+++++++|. ...|+.|.+++..|..++.
T Consensus 69 v~~~~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~-~~~p~~l~~~v~~~~~~~~ 125 (254)
T cd04191 69 IYYRRRRENTGRKAGNIADFCRRWGSRYDYMVVLDADS-LMSGDTIVRLVRRMEANPR 125 (254)
T ss_pred EEEEEcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCC-CCCHHHHHHHHHHHHhCCC
Confidence 34455664432233556677665434679999999998 5679999999999975444
No 123
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=80.78 E-value=22 Score=33.34 Aligned_cols=76 Identities=14% Similarity=0.286 Sum_probs=49.0
Q ss_pred cEEEEcCc--HH--------HHHHHHHcC--CeE--EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH
Q 027992 12 GLVVATDD--EK--------IAECCQQFG--ADV--IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 77 (215)
Q Consensus 12 ~ivV~td~--~~--------i~~~~~~~g--~~v--~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~ 77 (215)
+|+|..|. ++ +.+++++++ ..+ ..|..........+.++++.....+|+++++|+|+ ..+++.+.
T Consensus 161 e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs-~m~~d~L~ 239 (691)
T PRK05454 161 DFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADS-LMSGDTLV 239 (691)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCC-CCCHHHHH
Confidence 56777752 33 235566663 234 23333321223357777776656789999999998 55689999
Q ss_pred HHHHHHHcCCC
Q 027992 78 GVVKALQAAPD 88 (215)
Q Consensus 78 ~~i~~~~~~~~ 88 (215)
+++..|..+++
T Consensus 240 ~lv~~m~~dP~ 250 (691)
T PRK05454 240 RLVRLMEANPR 250 (691)
T ss_pred HHHHHHhhCcC
Confidence 99999975554
No 124
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=80.67 E-value=22 Score=26.87 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=30.9
Q ss_pred chH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 027992 43 GTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 88 (215)
Q Consensus 43 ~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~ 88 (215)
|.. .+..|+... ..|+|+++++|- .+.++.|..+++.+...+.
T Consensus 66 G~~~~~n~g~~~~--~g~~v~~ld~Dd-~~~~~~l~~~~~~~~~~~~ 109 (214)
T cd04196 66 GVARNFESLLQAA--DGDYVFFCDQDD-IWLPDKLERLLKAFLKDDK 109 (214)
T ss_pred cHHHHHHHHHHhC--CCCEEEEECCCc-ccChhHHHHHHHHHhcCCC
Confidence 443 455666654 679999999996 5579999999998644333
No 125
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=80.31 E-value=21 Score=26.36 Aligned_cols=72 Identities=24% Similarity=0.299 Sum_probs=44.5
Q ss_pred CCcEEEEcCc--HHHHHHHHHcCC-----eEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 10 FCGLVVATDD--EKIAECCQQFGA-----DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 10 ~d~ivV~td~--~~i~~~~~~~g~-----~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
..+|+|+-+. +...++++.++. .++..+... |-......|+... ..|+++++++|.-+ +++.++++++.
T Consensus 28 ~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~-G~~~a~n~g~~~a--~gd~i~~lD~D~~~-~~~~l~~l~~~ 103 (185)
T cd04179 28 DYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNF-GKGAAVRAGFKAA--RGDIVVTMDADLQH-PPEDIPKLLEK 103 (185)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCC-CccHHHHHHHHHh--cCCEEEEEeCCCCC-CHHHHHHHHHH
Confidence 4677777642 333444444322 224344332 2233456677665 34999999999865 89999999998
Q ss_pred HHc
Q 027992 83 LQA 85 (215)
Q Consensus 83 ~~~ 85 (215)
+..
T Consensus 104 ~~~ 106 (185)
T cd04179 104 LLE 106 (185)
T ss_pred Hhc
Confidence 643
No 126
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=78.47 E-value=33 Score=30.10 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=34.9
Q ss_pred CchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCc
Q 027992 42 NGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 89 (215)
Q Consensus 42 ~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~ 89 (215)
+|.+ ....|++.. ..|+|+++++|.=+ +++.+.++++.+.++++.
T Consensus 117 ~Gka~AlN~gl~~s--~g~~v~~~DaD~~~-~~d~L~~l~~~f~~~~~v 162 (439)
T TIGR03111 117 QGKAKALNAAIYNS--IGKYIIHIDSDGKL-HKDAIKNMVTRFENNPDI 162 (439)
T ss_pred CCHHHHHHHHHHHc--cCCEEEEECCCCCc-ChHHHHHHHHHHHhCCCe
Confidence 4544 566777765 56899999999965 999999999999755443
No 127
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=77.59 E-value=37 Score=28.65 Aligned_cols=69 Identities=9% Similarity=0.172 Sum_probs=43.3
Q ss_pred CcEEEEcCc--HHH----HHHHHHc-----CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Q 027992 11 CGLVVATDD--EKI----AECCQQF-----GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 78 (215)
Q Consensus 11 d~ivV~td~--~~i----~~~~~~~-----g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~ 78 (215)
.+|+|+-|. +.. .+.++++ ++.++..+.. .|.. .+..|+... ..|+++++++|. ...++.+.+
T Consensus 108 ~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N--~G~~~A~~~Gi~~a--~gd~I~~~DaD~-~~~~~~l~~ 182 (333)
T PTZ00260 108 YEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRN--KGKGGAVRIGMLAS--RGKYILMVDADG-ATDIDDFDK 182 (333)
T ss_pred EEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCC--CChHHHHHHHHHHc--cCCEEEEEeCCC-CCCHHHHHH
Confidence 467776641 222 3344432 2555544434 3443 466777765 569999999998 446788888
Q ss_pred HHHHHH
Q 027992 79 VVKALQ 84 (215)
Q Consensus 79 ~i~~~~ 84 (215)
+++.+.
T Consensus 183 l~~~l~ 188 (333)
T PTZ00260 183 LEDIML 188 (333)
T ss_pred HHHHHH
Confidence 888875
No 128
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=77.05 E-value=27 Score=30.04 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=32.8
Q ss_pred HHHHHHHHhc---CCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEE
Q 027992 46 RCNEALQKLE---KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 92 (215)
Q Consensus 46 ~i~~~l~~~~---~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~ 92 (215)
.+..|++... .+.|+++++++|.= ..|+.+.++++.+.+....+++
T Consensus 119 A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~~~~~vs 167 (384)
T TIGR03469 119 AVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAEGLDLVS 167 (384)
T ss_pred HHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhCCCCEEE
Confidence 4566666552 12799999999985 5899999999998753333443
No 129
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.98 E-value=40 Score=25.40 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=44.3
Q ss_pred CcEEEEcC--cHHHHHHHHHcCC----eEEeCCCCCCCchHHHHHHHHHh-cCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 11 CGLVVATD--DEKIAECCQQFGA----DVIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 11 d~ivV~td--~~~i~~~~~~~g~----~v~~~~~~~~~~~~~i~~~l~~~-~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
.+|+|+-+ .+...+++++++. .++..+... |....+..|++.. ....|+++++++|. .+.++.++++++.+
T Consensus 27 ~eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~n~-g~~~~~n~~~~~a~~~~~d~v~~ld~D~-~~~~~~l~~l~~~~ 104 (202)
T cd04185 27 DHIIVIDNASTDGTAEWLTSLGDLDNIVYLRLPENL-GGAGGFYEGVRRAYELGYDWIWLMDDDA-IPDPDALEKLLAYA 104 (202)
T ss_pred ceEEEEECCCCcchHHHHHHhcCCCceEEEECcccc-chhhHHHHHHHHHhccCCCEEEEeCCCC-CcChHHHHHHHHHH
Confidence 46777653 2345566666553 344444332 2222333444432 23679999999999 56799999999988
Q ss_pred H
Q 027992 84 Q 84 (215)
Q Consensus 84 ~ 84 (215)
.
T Consensus 105 ~ 105 (202)
T cd04185 105 D 105 (202)
T ss_pred h
Confidence 6
No 130
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=70.17 E-value=22 Score=23.67 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=38.2
Q ss_pred CCCcEEEEcCc--HHHHHHHHHc-CCeEEeCCCCCCCchH--HHHHHHHHhcCCCCEEEEecCCCCCCCHH
Q 027992 9 LFCGLVVATDD--EKIAECCQQF-GADVIMTSESCRNGTE--RCNEALQKLEKKYDIVVNIQGDEPLIEPE 74 (215)
Q Consensus 9 ~~d~ivV~td~--~~i~~~~~~~-g~~v~~~~~~~~~~~~--~i~~~l~~~~~~~d~v~~~~~d~Pli~~~ 74 (215)
++++++|..+. +...++++++ ++.++..+........ ...+.+.....+.|.++.+++|.=|..+.
T Consensus 18 G~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 18 GVDHIYIYDDGSTDGTREILRALPGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCEEEEEECCCCccHHHHHHhCCCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 57888888853 4566677665 4555444433322111 23333332224679999999997666554
No 131
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=69.50 E-value=19 Score=28.12 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=41.3
Q ss_pred cCCCCcEEEEcCc--HHHHHHHHH-c------C--CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHH
Q 027992 7 SFLFCGLVVATDD--EKIAECCQQ-F------G--ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPE 74 (215)
Q Consensus 7 ~~~~d~ivV~td~--~~i~~~~~~-~------g--~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~ 74 (215)
...+++|+|++.. +.+.+...+ . + +.++........|++ +++++...+ . +.++++.|| ++..-
T Consensus 43 ~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~~l~~~~~~i--~-~dflv~~gD--~i~~~ 117 (216)
T cd02507 43 KAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLI--R-SDFLLLSCD--LVSNI 117 (216)
T ss_pred HCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEEEEccCCCCCccHHHHHHHhhcC--C-CCEEEEeCC--EeecC
Confidence 3568899888843 444444432 1 1 223222222233443 566666655 2 347889999 56777
Q ss_pred HHHHHHHH
Q 027992 75 IIDGVVKA 82 (215)
Q Consensus 75 ~i~~~i~~ 82 (215)
.+..++++
T Consensus 118 ~l~~~l~~ 125 (216)
T cd02507 118 PLSELLEE 125 (216)
T ss_pred CHHHHHHH
Confidence 88898865
No 132
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=68.18 E-value=25 Score=25.73 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=44.9
Q ss_pred EEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 14 VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 14 vV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+..++...+++.++++|+++.... -..++.+.+..+++.+....|++++.=|+.+- ..+...++++.+
T Consensus 24 i~d~n~~~l~~~l~~~G~~v~~~~-~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g-~~D~t~~ai~~~ 91 (144)
T TIGR00177 24 IYDSNGPLLAALLEEAGFNVSRLG-IVPDDPEEIREILRKAVDEADVVLTTGGTGVG-PRDVTPEALEEL 91 (144)
T ss_pred EEeCcHHHHHHHHHHCCCeEEEEe-ecCCCHHHHHHHHHHHHhCCCEEEECCCCCCC-CCccHHHHHHHh
Confidence 456677888999999999875322 34456677877777654468888887666663 344445554443
No 133
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=66.04 E-value=72 Score=26.02 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCe-EEeCCCCC-CCchHHHH-HHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH---HHHcCCCceEEe
Q 027992 20 EKIAECCQQFGAD-VIMTSESC-RNGTERCN-EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK---ALQAAPDAVFST 93 (215)
Q Consensus 20 ~~i~~~~~~~g~~-v~~~~~~~-~~~~~~i~-~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~---~~~~~~~~~i~~ 93 (215)
+++.+.+++.+.. .+..+..- .=+.+..+ .|+... ..|+++++++|.=+ +++.|.+++. .+..++.+.+..
T Consensus 50 ~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A--~~d~l~flD~D~i~-~~~~i~~~~~~~~~l~~~~~~~~~~ 126 (281)
T PF10111_consen 50 EELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYA--RGDYLIFLDADCIP-SPDFIEKLLNHVKKLDKNPNAFLVY 126 (281)
T ss_pred HHHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHc--CCCEEEEEcCCeee-CHHHHHHHHHHHHHHhcCCCceEEE
Confidence 4567778878877 34332220 01334333 344443 67999999999854 8999999999 555555555543
No 134
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.87 E-value=52 Score=24.32 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=41.0
Q ss_pred cEEEEcC--cHHHHHHHHHcCC--eEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 12 GLVVATD--DEKIAECCQQFGA--DVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 12 ~ivV~td--~~~i~~~~~~~g~--~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
+|+|+-+ .+...+++++++. ..+.+... .|.. ....|++.. ..|+++++++|.=+. ++.+.+++..+..
T Consensus 29 evivvDd~s~d~~~~~~~~~~~~~~~~~~~~~--~g~~~a~n~~~~~a--~~~~v~~ld~D~~~~-~~~~~~~~~~~~~ 102 (202)
T cd06433 29 EYIVIDGGSTDGTVDIIKKYEDKITYWISEPD--KGIYDAMNKGIALA--TGDIIGFLNSDDTLL-PGALLAVVAAFAE 102 (202)
T ss_pred eEEEEeCCCCccHHHHHHHhHhhcEEEEecCC--cCHHHHHHHHHHHc--CCCEEEEeCCCcccC-chHHHHHHHHHHh
Confidence 5666643 2344555555543 23334333 3443 456677765 569999999998666 4666677755543
No 135
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=65.65 E-value=70 Score=25.77 Aligned_cols=75 Identities=11% Similarity=0.076 Sum_probs=48.3
Q ss_pred CCcEEEEcCc----HHHHHHHHHc-CCeEEeCCCCCCCchHHHHHHHHHh-cCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 10 FCGLVVATDD----EKIAECCQQF-GADVIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 10 ~d~ivV~td~----~~i~~~~~~~-g~~v~~~~~~~~~~~~~i~~~l~~~-~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
..+|||+=+. +.+.++.++. .+.++..+... |.......|++.+ ..+.|+|++++.|.-+ .++.|.++++.+
T Consensus 21 ~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~N~-G~a~a~N~Gi~~a~~~~~d~i~~lD~D~~~-~~~~l~~l~~~~ 98 (281)
T TIGR01556 21 VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGDNQ-GIAGAQNQGLDASFRRGVQGVLLLDQDSRP-GNAFLAAQWKLL 98 (281)
T ss_pred CCEEEEEECcCCCcHhHHHHhccCCCeEEEECCCCc-chHHHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHHHH
Confidence 4577777643 3455555543 35555554442 3333455666554 2467999999999965 589999999988
Q ss_pred HcC
Q 027992 84 QAA 86 (215)
Q Consensus 84 ~~~ 86 (215)
.+.
T Consensus 99 ~~~ 101 (281)
T TIGR01556 99 SAE 101 (281)
T ss_pred Hhc
Confidence 653
No 136
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=65.53 E-value=86 Score=26.75 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 46 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 46 ~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
...++++.. ..|+++++++|.= ..++.+++++..+..
T Consensus 117 ~l~~~~~~a--~ge~i~~~DaD~~-~~p~~L~~lv~~~~~ 153 (373)
T TIGR03472 117 NLINMLPHA--RHDILVIADSDIS-VGPDYLRQVVAPLAD 153 (373)
T ss_pred HHHHHHHhc--cCCEEEEECCCCC-cChhHHHHHHHHhcC
Confidence 445555554 6799999999974 499999999999853
No 137
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=65.46 E-value=11 Score=29.13 Aligned_cols=60 Identities=20% Similarity=0.357 Sum_probs=34.6
Q ss_pred HHHHHHHcC---CeEEeCCCCCC-CchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 22 IAECCQQFG---ADVIMTSESCR-NGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 22 i~~~~~~~g---~~v~~~~~~~~-~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
+.++++.++ +.++.++.... ++.. .+.+|++.. ..|+++++++|.=+ .|+.+.++++.+.
T Consensus 48 ~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~--~~d~i~~lD~D~~~-~p~~l~~~~~~~~ 112 (228)
T PF13641_consen 48 LRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAA--RGDYILFLDDDTVL-DPDWLERLLAAFA 112 (228)
T ss_dssp HHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-----SEEEEE-SSEEE--CHHHHHHHHHHH
T ss_pred HHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhc--CCCEEEEECCCcEE-CHHHHHHHHHHHH
Confidence 555655654 24454443211 0122 356777765 58999999999877 9999999999994
No 138
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=63.76 E-value=65 Score=24.71 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEE
Q 027992 47 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 92 (215)
Q Consensus 47 i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~ 92 (215)
...|++.. ..|+++++++|.- ..++.+.+++..+.++++.+++
T Consensus 76 ~N~g~~~a--~gd~i~~lD~D~~-~~~~~l~~~~~~~~~~~~~~v~ 118 (219)
T cd06913 76 KNQAIAQS--SGRYLCFLDSDDV-MMPQRIRLQYEAALQHPNSIIG 118 (219)
T ss_pred HHHHHHhc--CCCEEEEECCCcc-CChhHHHHHHHHHHhCCCcEEE
Confidence 34566554 5699999999976 5667788888877655555444
No 139
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=63.69 E-value=34 Score=31.08 Aligned_cols=67 Identities=15% Similarity=0.412 Sum_probs=45.9
Q ss_pred HHHHHcC--CeEEeCC--CCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceE
Q 027992 24 ECCQQFG--ADVIMTS--ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 91 (215)
Q Consensus 24 ~~~~~~g--~~v~~~~--~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i 91 (215)
+++++.+ .+++.|. .........|.+..+.-...+++.+++++|+ ..+.+.+.+++..++.++++-+
T Consensus 203 ~l~~e~~g~~~ifYRrRr~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADS-vMtgd~lvrLv~~ME~~P~aGl 273 (736)
T COG2943 203 ELCRELGGEGNIFYRRRRRNVKRKAGNIADFCRRWGSAYSYMLVLDADS-VMTGDCLVRLVRLMEANPDAGL 273 (736)
T ss_pred HHHHHhCCCCceeeehHhhhhcccccCHHHHHHHhCcccceEEEeeccc-ccCchHHHHHHHHHhhCCCCce
Confidence 5566665 4554322 2211222346777776677899999999998 4688999999999988777544
No 140
>PRK10018 putative glycosyl transferase; Provisional
Probab=62.21 E-value=88 Score=25.70 Aligned_cols=69 Identities=14% Similarity=0.241 Sum_probs=43.8
Q ss_pred cEEEEcCc----HHHHHHHHHcC---CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 12 GLVVATDD----EKIAECCQQFG---ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 12 ~ivV~td~----~~i~~~~~~~g---~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+|+|+-|. +.+.+++++++ +.++..+.. .|.+ ....|+... ..|+|+++++|-=+ .|+.|..+++.+
T Consensus 36 EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~~n--~G~~~a~N~gi~~a--~g~~I~~lDaDD~~-~p~~l~~~~~~~ 110 (279)
T PRK10018 36 EMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDIN--SGACAVRNQAIMLA--QGEYITGIDDDDEW-TPNRLSVFLAHK 110 (279)
T ss_pred EEEEEECCCCCHHHHHHHHHHcCCCCEEEEECCCC--CCHHHHHHHHHHHc--CCCEEEEECCCCCC-CccHHHHHHHHH
Confidence 56666431 34556666543 333444333 4554 345577765 57899999999755 588899999887
Q ss_pred Hc
Q 027992 84 QA 85 (215)
Q Consensus 84 ~~ 85 (215)
..
T Consensus 111 ~~ 112 (279)
T PRK10018 111 QQ 112 (279)
T ss_pred Hh
Confidence 54
No 141
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=60.72 E-value=40 Score=24.17 Aligned_cols=67 Identities=15% Similarity=0.266 Sum_probs=42.7
Q ss_pred EEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 15 VATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 15 V~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
.-++...+++.++++|.++.... -..++.+.+.+++..+-.++|+|+..=|+.+= ..+...++++.+
T Consensus 17 ~d~n~~~l~~~l~~~G~~v~~~~-~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g-~~D~t~~ai~~~ 83 (133)
T cd00758 17 EDTNGPALEALLEDLGCEVIYAG-VVPDDADSIRAALIEASREADLVLTTGGTGVG-RRDVTPEALAEL 83 (133)
T ss_pred EEchHHHHHHHHHHCCCEEEEee-ecCCCHHHHHHHHHHHHhcCCEEEECCCCCCC-CCcchHHHHHHh
Confidence 34455677888899998874322 33456677777776654457888888777765 344444555544
No 142
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=60.17 E-value=97 Score=25.54 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=38.1
Q ss_pred CCeEEeCCCCCCCchHHHHHHHHHh-cCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEE
Q 027992 30 GADVIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 92 (215)
Q Consensus 30 g~~v~~~~~~~~~~~~~i~~~l~~~-~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~ 92 (215)
.+.++.....+.. ......|+... ....++++++..| =.+.+..|.++++.+...+...+.
T Consensus 57 ~v~~i~~~~NlG~-agg~n~g~~~a~~~~~~~~l~LN~D-~~~~~~~l~~ll~~~~~~~~~~~~ 118 (305)
T COG1216 57 NVRLIENGENLGF-AGGFNRGIKYALAKGDDYVLLLNPD-TVVEPDLLEELLKAAEEDPAAGVV 118 (305)
T ss_pred cEEEEEcCCCccc-hhhhhHHHHHHhcCCCcEEEEEcCC-eeeChhHHHHHHHHHHhCCCCeEe
Confidence 4555666666532 22222333333 2223389999999 778899999999999765454444
No 143
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=59.62 E-value=25 Score=24.58 Aligned_cols=65 Identities=18% Similarity=0.403 Sum_probs=43.4
Q ss_pred CcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc--CCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 11 CGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 11 d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~--~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
.+|++++.+++-.+.++++|+..+....+ .+ +...+..+. ...|+++-..| +++.++.+++.++.
T Consensus 15 ~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~--~~---~~~~i~~~~~~~~~d~vid~~g-----~~~~~~~~~~~l~~ 81 (130)
T PF00107_consen 15 AKVIATDRSEEKLELAKELGADHVIDYSD--DD---FVEQIRELTGGRGVDVVIDCVG-----SGDTLQEAIKLLRP 81 (130)
T ss_dssp SEEEEEESSHHHHHHHHHTTESEEEETTT--SS---HHHHHHHHTTTSSEEEEEESSS-----SHHHHHHHHHHEEE
T ss_pred CEEEEEECCHHHHHHHHhhcccccccccc--cc---cccccccccccccceEEEEecC-----cHHHHHHHHHHhcc
Confidence 67778888888889999999876443322 12 333333433 25677777766 47889998888765
No 144
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=57.89 E-value=72 Score=23.35 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 47 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 47 i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
...|++.. ..|+++++++|. ..+++.|.++++.+
T Consensus 71 ~n~g~~~a--~g~~i~~lD~D~-~~~~~~l~~~~~~~ 104 (182)
T cd06420 71 RNKAIAAA--KGDYLIFIDGDC-IPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHh--cCCEEEEEcCCc-ccCHHHHHHHHHHh
Confidence 34566554 568999999998 66899999988877
No 145
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=56.89 E-value=88 Score=24.05 Aligned_cols=69 Identities=23% Similarity=0.398 Sum_probs=42.0
Q ss_pred CcEEEEcC--cHHHHHH---HHHcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 11 CGLVVATD--DEKIAEC---CQQFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 11 d~ivV~td--~~~i~~~---~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
.+|+|+.+ .++..+. ........+..... .|.. .+..|+... ..|+++++++|.=+- ++.+.++++.+.
T Consensus 29 ~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~~~~--~g~~~a~n~g~~~a--~~d~v~~lD~D~~~~-~~~l~~l~~~~~ 103 (235)
T cd06434 29 LEIIVVTDGDDEPYLSILSQTVKYGGIFVITVPH--PGKRRALAEGIRHV--TTDIVVLLDSDTVWP-PNALPEMLKPFE 103 (235)
T ss_pred CEEEEEeCCCChHHHHHHHhhccCCcEEEEecCC--CChHHHHHHHHHHh--CCCEEEEECCCceeC-hhHHHHHHHhcc
Confidence 46777764 2333333 22222222333323 3433 456677765 679999999998655 677999999986
No 146
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=55.67 E-value=81 Score=24.16 Aligned_cols=69 Identities=23% Similarity=0.260 Sum_probs=38.8
Q ss_pred CCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 10 ~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+.+||||=-..+...+-+-+.+.++..... .-......-+..+...-+++++.+||.|= +-|++.+...
T Consensus 2 IkevIVVEGK~D~~~lk~~~d~~~I~T~Gs--~i~~~~i~~i~~~~~~rgVIIfTDpD~~G---ekIRk~i~~~ 70 (174)
T TIGR00334 2 IKEIIVVEGKDDQARIKQAFDVDVIETNGS--ALKDETINLIKKAQKKQGVIILTDPDFPG---EKIRKKIEQH 70 (174)
T ss_pred CCeEEEEecchHHHHHHHhcCceEEEECCC--ccCHHHHHHHHHHhhcCCEEEEeCCCCch---HHHHHHHHHH
Confidence 678888853333334434445676644322 11112333333333456899999999874 6677766664
No 147
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=55.00 E-value=88 Score=27.20 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=52.0
Q ss_pred CcEEEEcC---cHHHHHHHHHcCCeEEeCCCCCCC--chHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 11 CGLVVATD---DEKIAECCQQFGADVIMTSESCRN--GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 11 d~ivV~td---~~~i~~~~~~~g~~v~~~~~~~~~--~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
|+|+|+.. .+...++++.+|+++..-..++.. +.+.+..+|+. .++.+.|.+.+++.+-=--..+.++.+..++
T Consensus 81 dkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~-~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~ 159 (383)
T COG0075 81 DKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDK-DPDIKAVAVVHNETSTGVLNPLKEIAKAAKE 159 (383)
T ss_pred CeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc-CCCccEEEEEeccCcccccCcHHHHHHHHHH
Confidence 57777775 488899999999988432334332 23457777774 2467888888887765555567777777766
Q ss_pred CCCceE
Q 027992 86 APDAVF 91 (215)
Q Consensus 86 ~~~~~i 91 (215)
+ +..+
T Consensus 160 ~-g~l~ 164 (383)
T COG0075 160 H-GALL 164 (383)
T ss_pred c-CCEE
Confidence 4 4433
No 148
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=54.16 E-value=44 Score=24.81 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=21.1
Q ss_pred ccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCC
Q 027992 6 HSFLFCGLVVATDDEKIAECCQQFGADVIMTSES 39 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~ 39 (215)
.+..+|.|++.....-..+.++++++.++.+...
T Consensus 64 ~~~~Vd~V~v~~~~~~~~~~~~~~~~d~vv~G~d 97 (152)
T cd02173 64 ACRYVDEVVIGAPYVITKELIEHFKIDVVVHGKT 97 (152)
T ss_pred hcCCCCEEEECCCCcchHHHHHHhCCCEEEECCC
Confidence 4567777777655444556777777776444333
No 149
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=53.11 E-value=1.3e+02 Score=25.62 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=46.6
Q ss_pred CcEEEEc---CcHHHHHHHHHcCCeEEeCCCCCCCch--HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 11 CGLVVAT---DDEKIAECCQQFGADVIMTSESCRNGT--ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 11 d~ivV~t---d~~~i~~~~~~~g~~v~~~~~~~~~~~--~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
|.|+|+. -++...+.++.+|++|-.-+.+..++. ..+..++.+- .+..+++.++|+--==.+++.+....+..
T Consensus 93 d~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh--~p~~vfv~hgdsSTgV~q~~~~~~g~lc~ 170 (385)
T KOG2862|consen 93 DNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQH--KPKAVFVTHGDSSTGVLQDLLAISGELCH 170 (385)
T ss_pred CeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhc--CCceEEEEecCccccccchHHHHHHHHhh
Confidence 4454444 367778999999999833344443322 2466666653 66789999998754333343344444433
Q ss_pred CCCceEE
Q 027992 86 APDAVFS 92 (215)
Q Consensus 86 ~~~~~i~ 92 (215)
.+++.+-
T Consensus 171 k~~~lll 177 (385)
T KOG2862|consen 171 KHEALLL 177 (385)
T ss_pred cCCeEEE
Confidence 3455443
No 150
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=52.85 E-value=82 Score=24.81 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=35.0
Q ss_pred CchHH-HHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCC-ceEEeeccc
Q 027992 42 NGTER-CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD-AVFSTAVTS 97 (215)
Q Consensus 42 ~~~~~-i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~-~~i~~~~~~ 97 (215)
.++++ ...|++. .+.+++++++-|-=++++..+.++++.++++++ +++++..++
T Consensus 40 ~s~~~~yN~a~~~--a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~ 95 (217)
T PF13712_consen 40 KSMAAAYNEAMEK--AKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSK 95 (217)
T ss_dssp S-TTTHHHHHGGG----SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEE
T ss_pred cCHHHHHHHHHHh--CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCC
Confidence 34443 3445554 367899999999999999999999999965445 344543333
No 151
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=51.39 E-value=52 Score=26.48 Aligned_cols=78 Identities=12% Similarity=0.017 Sum_probs=41.9
Q ss_pred cccccCCCCcEEEEcCc-----HHHHHHHHHcCCeEEe-CCCCCCCc-------hHHHHHHHHHh-cCCCCEEEEecCCC
Q 027992 3 VMCHSFLFCGLVVATDD-----EKIAECCQQFGADVIM-TSESCRNG-------TERCNEALQKL-EKKYDIVVNIQGDE 68 (215)
Q Consensus 3 ~a~~~~~~d~ivV~td~-----~~i~~~~~~~g~~v~~-~~~~~~~~-------~~~i~~~l~~~-~~~~d~v~~~~~d~ 68 (215)
+|++.-++.+|-|+|.. +.+++..++.|++|.. +.-...++ ...+..++..+ .++.|.|++. ||+
T Consensus 113 ~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifis-CTn 191 (239)
T TIGR02990 113 DGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLS-CTA 191 (239)
T ss_pred HHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEe-CCC
Confidence 45566677888888853 4455667777888732 22122111 12345555443 3466777666 333
Q ss_pred CCCCHHHHHHHHHH
Q 027992 69 PLIEPEIIDGVVKA 82 (215)
Q Consensus 69 Pli~~~~i~~~i~~ 82 (215)
|.+.+.|+++=..
T Consensus 192 -Lrt~~vi~~lE~~ 204 (239)
T TIGR02990 192 -LRAATCAQRIEQA 204 (239)
T ss_pred -chhHHHHHHHHHH
Confidence 5555555554333
No 152
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=51.12 E-value=95 Score=22.98 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=18.5
Q ss_pred ccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCC
Q 027992 6 HSFLFCGLVVATDDEKIAECCQQFGADVIMTSESC 40 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~ 40 (215)
+++.+|+|++........+.++++++.++....++
T Consensus 64 ~~~~Vd~Vi~~~~~~~~~~~i~~~~~d~vv~G~d~ 98 (150)
T cd02174 64 HCKWVDEVVEGAPYVTTPEFLDKYKCDYVAHGDDI 98 (150)
T ss_pred hcCCCCeEEECCCCCChHHHHHHhCCCEEEECCCC
Confidence 34566666665443334455666666664433333
No 153
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=50.61 E-value=49 Score=29.02 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=41.5
Q ss_pred EEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCC
Q 027992 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPL 70 (215)
Q Consensus 13 ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pl 70 (215)
-++.|+...+++.++++|+++.... -..++...+..+++.+...+|+|++.=|..|-
T Consensus 16 ~i~dtN~~~l~~~L~~~G~~v~~~~-~v~Dd~~~i~~~l~~a~~~~DlVIttGGlgpt 72 (413)
T TIGR00200 16 QIVNTNAQWLADFLAHQGLPLSRRT-TVGDNPERLKTIIRIASERADVLIFNGGLGPT 72 (413)
T ss_pred cEEEchHHHHHHHHHHCCCeEEEEE-EeCCCHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 3566778889999999999874322 34456777888887765578999887776664
No 154
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=49.77 E-value=86 Score=26.98 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=46.6
Q ss_pred cEEEEcC--cHHHHHHHHHcCCe----E-EeCCCCCCCc-hHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 12 GLVVATD--DEKIAECCQQFGAD----V-IMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 12 ~ivV~td--~~~i~~~~~~~g~~----v-~~~~~~~~~~-~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+|+|+-| +++..+++++++.+ + +..++.-.+| ...+..|+... ..|+|+++|+|.- ..++.+.+++..+
T Consensus 86 evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~--~~d~V~~~DaD~~-~~~d~l~~~~~~f 162 (439)
T COG1215 86 EVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRA--KGDVVVILDADTV-PEPDALRELVSPF 162 (439)
T ss_pred eEEEECCCCChhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhc--CCCEEEEEcCCCC-CChhHHHHHHhhh
Confidence 6777775 46666666665432 1 2221011134 33567777765 4899999999996 5788899999999
Q ss_pred HcC
Q 027992 84 QAA 86 (215)
Q Consensus 84 ~~~ 86 (215)
...
T Consensus 163 ~~~ 165 (439)
T COG1215 163 EDP 165 (439)
T ss_pred cCC
Confidence 753
No 155
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=49.41 E-value=1.1e+02 Score=25.52 Aligned_cols=65 Identities=3% Similarity=-0.004 Sum_probs=37.1
Q ss_pred CCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCC---chHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH
Q 027992 10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRN---GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 77 (215)
Q Consensus 10 ~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~---~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~ 77 (215)
.+-+.|.++.+...+.|+++|+.++.-+....+ ....+...++.. ++| ++++-|=+-.++++.++
T Consensus 121 ~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~--~~D-livlagym~il~~~~l~ 188 (289)
T PRK13010 121 MDIVGIISNHPDLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETS--GAE-LVVLARYMQVLSDDLSR 188 (289)
T ss_pred cEEEEEEECChhHHHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHh--CCC-EEEEehhhhhCCHHHHh
Confidence 344566667777778888888876431111111 122355556554 456 44556777777776654
No 156
>PRK01215 competence damage-inducible protein A; Provisional
Probab=49.38 E-value=59 Score=26.62 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=38.2
Q ss_pred EEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCC
Q 027992 14 VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPL 70 (215)
Q Consensus 14 vV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pl 70 (215)
++-|+...+++.+.++|+++.... -..++...+..+++.+....|+|++.=|..|-
T Consensus 20 i~dtn~~~l~~~L~~~G~~v~~~~-~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~t 75 (264)
T PRK01215 20 TVNTNASWIARRLTYLGYTVRRIT-VVMDDIEEIVSAFREAIDRADVVVSTGGLGPT 75 (264)
T ss_pred EEEhhHHHHHHHHHHCCCeEEEEE-EeCCCHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 445566788888999999873221 23356677878877664467888887666664
No 157
>PRK03673 hypothetical protein; Provisional
Probab=47.98 E-value=87 Score=27.33 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=40.9
Q ss_pred cEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCC
Q 027992 12 GLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEP 69 (215)
Q Consensus 12 ~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~P 69 (215)
--++.|+...++..+.++|+++... .-..++...+..+++......|+|++.=|..|
T Consensus 16 G~i~dtN~~~la~~L~~~G~~v~~~-~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGp 72 (396)
T PRK03673 16 GQIVDTNAAWLADFFFHQGLPLSRR-NTVGDNLDALVAILRERSQHADVLIVNGGLGP 72 (396)
T ss_pred CeEEEhHHHHHHHHHHHCCCEEEEE-EEcCCCHHHHHHHHHHHhccCCEEEEcCCCCC
Confidence 3466778899999999999987422 23335667788888776557898888776665
No 158
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=47.74 E-value=45 Score=24.58 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=39.3
Q ss_pred CcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcC--CCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 18 DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 18 d~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~--~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+...+++.++++|+++.. ..-..++.+.+.++++.+.. .+|.|+..=|.++-- .+...++++.+
T Consensus 21 n~~~l~~~l~~~G~~v~~-~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~-~D~t~~al~~~ 86 (152)
T cd00886 21 SGPALVELLEEAGHEVVA-YEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAP-RDVTPEATRPL 86 (152)
T ss_pred hHHHHHHHHHHcCCeeee-EEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCC-CcCcHHHHHHH
Confidence 456778889999988642 22344566777777765533 678888776666543 33334444443
No 159
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.30 E-value=1.2e+02 Score=22.90 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=42.6
Q ss_pred CCcEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 10 FCGLVVATDD--EKIAECCQQFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 10 ~d~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
..+|+|+-++ ++..+++++.++..+..+ .|.+ ....|+... ..|+++++++|. .+++..+++++..+..
T Consensus 28 ~~evivvdd~s~d~~~~~~~~~~~~~~~~~----~g~~~a~n~g~~~a--~~~~i~~~D~D~-~~~~~~l~~l~~~~~~ 99 (221)
T cd02522 28 PLEIIVVDGGSTDGTVAIARSAGVVVISSP----KGRARQMNAGAAAA--RGDWLLFLHADT-RLPPDWDAAIIETLRA 99 (221)
T ss_pred CcEEEEEeCCCCccHHHHHhcCCeEEEeCC----cCHHHHHHHHHHhc--cCCEEEEEcCCC-CCChhHHHHHHHHhhc
Confidence 3467776532 344556665555444332 2333 234466655 469999999997 4589999998776654
No 160
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=46.84 E-value=27 Score=26.36 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=19.8
Q ss_pred CcEEEEcCcHHHHHHHHHcCCeEE
Q 027992 11 CGLVVATDDEKIAECCQQFGADVI 34 (215)
Q Consensus 11 d~ivV~td~~~i~~~~~~~g~~v~ 34 (215)
..|+|+|+|-.+...+...|+.++
T Consensus 95 ~~v~VVTSD~~iq~~~~~~GA~~i 118 (166)
T PF05991_consen 95 RQVTVVTSDREIQRAARGRGAKRI 118 (166)
T ss_pred CeEEEEeCCHHHHHHHhhCCCEEE
Confidence 678888888888888888888765
No 161
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=46.65 E-value=50 Score=24.28 Aligned_cols=69 Identities=14% Similarity=0.268 Sum_probs=36.8
Q ss_pred HHHHHHHcCCeEEeCCCCCCCchHHH-HHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHHHHHHHcCCCceEEeec
Q 027992 22 IAECCQQFGADVIMTSESCRNGTERC-NEALQKLEKKYDIVVNIQGDEP--LIEPEIIDGVVKALQAAPDAVFSTAV 95 (215)
Q Consensus 22 i~~~~~~~g~~v~~~~~~~~~~~~~i-~~~l~~~~~~~d~v~~~~~d~P--li~~~~i~~~i~~~~~~~~~~i~~~~ 95 (215)
..+.+++||+..+.|--+..-++..+ .+|+.-+...+| +|..| .+-.+.++-+.-.|++++++++++.+
T Consensus 33 fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~-----dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhc 104 (173)
T KOG2836|consen 33 FIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFD-----DGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHC 104 (173)
T ss_pred HHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccc-----cCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 34667889998765544433344333 233322211111 33333 33344455555566788999999765
No 162
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=45.95 E-value=56 Score=23.36 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=38.3
Q ss_pred EcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 16 ATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 16 ~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
.++...+.+.++++|+++.... -..++.+.+..++..+...+|+|+..=|+.|- ..+...++++.
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~-~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g-~~D~t~~~l~~ 81 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYV-IVPDDKEAIKEALREALERADLVITTGGTGPG-PDDVTPEAVAE 81 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEE-EeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCC-CCcCcHHHHHH
Confidence 3445677888888888763211 12245666777776553457888887777743 33334444443
No 163
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=45.10 E-value=1.3e+02 Score=22.66 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=38.5
Q ss_pred EEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCC
Q 027992 14 VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE 72 (215)
Q Consensus 14 vV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~ 72 (215)
+.-|+...+++.+++.|+++... .-..++...+..++..+....|+|++.=|..|=-.
T Consensus 16 i~d~n~~~l~~~L~~~G~~v~~~-~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~ 73 (170)
T cd00885 16 IVDTNAAFLAKELAELGIEVYRV-TVVGDDEDRIAEALRRASERADLVITTGGLGPTHD 73 (170)
T ss_pred EEEhHHHHHHHHHHHCCCEEEEE-EEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCC
Confidence 34455677888899999987321 12334566777777665456788888877776544
No 164
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=44.86 E-value=1.1e+02 Score=22.99 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 46 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 46 ~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
.+..++.+ ....|+++++++|- .++++.+.+++..+..
T Consensus 21 nL~~~~~~-~a~~d~~~~~DsDi-~v~p~~L~~lv~~l~~ 58 (175)
T PF13506_consen 21 NLAQGLEA-GAKYDYLVISDSDI-RVPPDYLRELVAPLAD 58 (175)
T ss_pred HHHHHHHh-hCCCCEEEEECCCe-eECHHHHHHHHHHHhC
Confidence 56777776 24789999999999 7899999999999975
No 165
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.59 E-value=92 Score=20.89 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=29.5
Q ss_pred CCCcEEEEcCc------HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHh
Q 027992 9 LFCGLVVATDD------EKIAECCQQFGADVIMTSESCRNGTERCNEALQKL 54 (215)
Q Consensus 9 ~~d~ivV~td~------~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~ 54 (215)
..|-|||.|+. ..+++.|+++|..++... . .+.+++..+|..+
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~-~--~~~~~l~~~l~~~ 96 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR-S--RGVSSLERALERL 96 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC-C--CCHHHHHHHHHhh
Confidence 34888999962 567788999999885432 1 4566777776543
No 166
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=42.29 E-value=1.6e+02 Score=23.98 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=37.7
Q ss_pred EEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecC
Q 027992 14 VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG 66 (215)
Q Consensus 14 vV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~ 66 (215)
+|-|+...+++.+..+|+.+... .-..+..+++..+++.+...+|+|++.=|
T Consensus 18 ivdtNa~~la~~L~~~G~~v~~~-~~VgD~~~~I~~~l~~a~~r~D~vI~tGG 69 (255)
T COG1058 18 IVDTNAAFLADELTELGVDLARI-TTVGDNPDRIVEALREASERADVVITTGG 69 (255)
T ss_pred eecchHHHHHHHHHhcCceEEEE-EecCCCHHHHHHHHHHHHhCCCEEEECCC
Confidence 56778899999999999987422 23445677888888877556888877443
No 167
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.08 E-value=1.8e+02 Score=23.22 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=44.7
Q ss_pred ccccCCCCcEEEEcCc-----HHHHHHHHHcCCeEEe-CCCCCCCch--HH------HHHHHHHhcCCCCEEEEecCCCC
Q 027992 4 MCHSFLFCGLVVATDD-----EKIAECCQQFGADVIM-TSESCRNGT--ER------CNEALQKLEKKYDIVVNIQGDEP 69 (215)
Q Consensus 4 a~~~~~~d~ivV~td~-----~~i~~~~~~~g~~v~~-~~~~~~~~~--~~------i~~~l~~~~~~~d~v~~~~~d~P 69 (215)
|++.-.+.+|.|.|.. +..+++.++.|++++. ..-.+.+.. ++ +..|.+...++.|.+++- ||+
T Consensus 112 aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiS-CTn- 189 (238)
T COG3473 112 ALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFIS-CTN- 189 (238)
T ss_pred HHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeEEEE-eec-
Confidence 4566677899999963 3345788889999753 111222221 11 233333345688988887 554
Q ss_pred CCCHHHHHHH
Q 027992 70 LIEPEIIDGV 79 (215)
Q Consensus 70 li~~~~i~~~ 79 (215)
|++.+.|.++
T Consensus 190 lRt~eii~~l 199 (238)
T COG3473 190 LRTFEIIEKL 199 (238)
T ss_pred cccHHHHHHH
Confidence 7777777654
No 168
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=42.01 E-value=29 Score=25.25 Aligned_cols=63 Identities=17% Similarity=0.312 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 18 DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 18 d~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
+...+.+.++++|+++.... -..++...+.+++...-...|.|++.=|+.|--. +...++++.
T Consensus 18 n~~~l~~~l~~~G~~v~~~~-~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~~-D~t~~a~~~ 80 (144)
T PF00994_consen 18 NGPFLAALLEELGIEVIRYG-IVPDDPDAIKEALRRALDRADLVITTGGTGPGPD-DVTPEALAE 80 (144)
T ss_dssp HHHHHHHHHHHTTEEEEEEE-EEESSHHHHHHHHHHHHHTTSEEEEESSSSSSTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeeeEEE-EECCCHHHHHHHHHhhhccCCEEEEcCCcCcccC-CcccHHHHH
Confidence 34667888899999874321 2335677787777654345699999999998543 333334443
No 169
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.92 E-value=1.3e+02 Score=25.62 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCeEEeCCCCCCCchH-HHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 20 EKIAECCQQFGADVIMTSESCRNGTE-RCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
+++...+++.|+.++..+ . .++-+ .+++|+++.. .++|++++=.+-+==-....++++=+.
T Consensus 184 EQL~~w~er~gv~vI~~~-~-G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI 246 (340)
T COG0552 184 EQLEVWGERLGVPVISGK-E-GADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKI 246 (340)
T ss_pred HHHHHHHHHhCCeEEccC-C-CCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHH
Confidence 677788899999988643 3 23333 4688887763 578988886666655555555554433
No 170
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=40.29 E-value=1.6e+02 Score=22.18 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=44.4
Q ss_pred CCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchH---HHHHHHHHhcCCCCEEEEecCC-CCCCCHHHHHHHH
Q 027992 8 FLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTE---RCNEALQKLEKKYDIVVNIQGD-EPLIEPEIIDGVV 80 (215)
Q Consensus 8 ~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~---~i~~~l~~~~~~~d~v~~~~~d-~Pli~~~~i~~~i 80 (215)
..++.|-|.+-+.-+.+++++.|++++.|.-.-.++.+ .+.+.=+.+.++.|.++++.+. --++++..++++.
T Consensus 60 ~~l~nV~V~~f~~Llvd~ak~~~a~~ivRGLR~~sDfeYE~qma~~N~~L~~eveTvFl~~s~~~~~iSSs~Vreia 136 (159)
T COG0669 60 KHLPNVEVVGFSGLLVDYAKKLGATVLVRGLRAVSDFEYELQMAHMNRKLAPEVETVFLMPSPEYSFISSSLVREIA 136 (159)
T ss_pred cCCCceEEEecccHHHHHHHHcCCCEEEEeccccchHHHHHHHHHHHHhhcccccEEEecCCcceehhhHHHHHHHH
Confidence 34566666665557778999999998766544333433 2333334454567777766554 3567777766643
No 171
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=39.89 E-value=1.3e+02 Score=21.10 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=28.2
Q ss_pred HHHHHcCCeE--EeCCCCCCCchHHHHHHHHHhc--CCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 24 ECCQQFGADV--IMTSESCRNGTERCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 24 ~~~~~~g~~v--~~~~~~~~~~~~~i~~~l~~~~--~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
..|++.|+.+ +.-+.+ .....+...+..+. +..+++++..|=-+-++...+..+|
T Consensus 52 k~~~~~Gi~~~~~~l~~~--~~~~el~~~i~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I 110 (117)
T PF00763_consen 52 KAAEKLGIEFELIELPED--ISEEELLELIEKLNEDPSVHGILVQLPLPKHIDERKILEAI 110 (117)
T ss_dssp HHHHHHT-EEEEEEE-TT--SSHHHHHHHHHHHHH-TT-SEEEEESSSSTTSHHHHHHHTS
T ss_pred HHHHHcCCceEEEECCCC--cCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCccHHHHHhcc
Confidence 5566677765 222222 23445556666553 4557777776665555555444433
No 172
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=39.47 E-value=1.4e+02 Score=21.39 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=47.7
Q ss_pred ccCCCCcEEEE-cCcHHHHHHHHHcCCeEE------eCCCCCCCchHHHHHHHHHhcCCCCEEE--Ee--cCCCCCCCHH
Q 027992 6 HSFLFCGLVVA-TDDEKIAECCQQFGADVI------MTSESCRNGTERCNEALQKLEKKYDIVV--NI--QGDEPLIEPE 74 (215)
Q Consensus 6 ~~~~~d~ivV~-td~~~i~~~~~~~g~~v~------~~~~~~~~~~~~i~~~l~~~~~~~d~v~--~~--~~d~Pli~~~ 74 (215)
.++.|.-+=.+ .+.++-...+++.|+.|- ..-++.+||++++..++....-+.|++. +. +-.--+++.+
T Consensus 38 dt~dFGIiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~e 117 (142)
T COG4747 38 DTGDFGIIRMVVDRPDEAHSVLEEAGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVE 117 (142)
T ss_pred cccCcceEEEEcCChHHHHHHHHHCCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhh
Confidence 34455545334 445566677888887641 1223455889999888876433334322 11 1122346789
Q ss_pred HHHHHHHHHHc
Q 027992 75 IIDGVVKALQA 85 (215)
Q Consensus 75 ~i~~~i~~~~~ 85 (215)
+++++++.+++
T Consensus 118 d~d~~~~aLed 128 (142)
T COG4747 118 DIDRAIKALED 128 (142)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 173
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=38.80 E-value=1.6e+02 Score=24.33 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=28.7
Q ss_pred EEEEcCcHHHHHHHHHcCCeEEeCCCCCCC---chHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992 13 LVVATDDEKIAECCQQFGADVIMTSESCRN---GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 13 ivV~td~~~i~~~~~~~g~~v~~~~~~~~~---~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i 76 (215)
+.|.|+.+....+|+++|+.++.-+....+ ....+...++.. .+|.+++ -+=+-.++++.+
T Consensus 120 ~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~--~~Dlivl-agy~~il~~~~l 183 (286)
T PRK13011 120 VGVVSNHPDLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEES--GAELVVL-ARYMQVLSPELC 183 (286)
T ss_pred EEEEECCccHHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHHh--CcCEEEE-eChhhhCCHHHH
Confidence 344556666666677777765321111001 111234444443 4554333 455666665544
No 174
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=38.63 E-value=1.8e+02 Score=22.27 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=48.4
Q ss_pred cEEEEcCcHHHH-----HHHHHcCCeEEeCCCCCC---CchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 12 GLVVATDDEKIA-----ECCQQFGADVIMTSESCR---NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 12 ~ivV~td~~~i~-----~~~~~~g~~v~~~~~~~~---~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+||++||.++++ .++++.|.+++-.+.--. +|. .+...+... ..|=|+++--|+=+.-...=++++...
T Consensus 1 kVIlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~-elV~lIk~a--~~DPV~VMfDD~G~~g~G~GE~Al~~v 77 (180)
T PF14097_consen 1 KVILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGE-ELVELIKQA--PHDPVLVMFDDKGFIGEGPGEQALEYV 77 (180)
T ss_pred CEEEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHH-HHHHHHHhC--CCCCEEEEEeCCCCCCCCccHHHHHHH
Confidence 589999987765 456778998864321111 121 234444443 567788888888888877777888877
Q ss_pred HcCCC
Q 027992 84 QAAPD 88 (215)
Q Consensus 84 ~~~~~ 88 (215)
..+++
T Consensus 78 ~~h~~ 82 (180)
T PF14097_consen 78 ANHPD 82 (180)
T ss_pred HcCCC
Confidence 66555
No 175
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.57 E-value=92 Score=26.54 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=46.5
Q ss_pred ccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHh-c-CCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 6 HSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL-E-KKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~-~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+.-...+|+++=-.+.-.+.|+++|++++.+..... ....++..++.. . ..+|..+-..+-+|-+ +.++.+.
T Consensus 190 ka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~-~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~-----~aai~a~ 263 (354)
T KOG0024|consen 190 KAMGASDVVITDLVANRLELAKKFGATVTDPSSHKS-SPQELAELVEKALGKKQPDVTFDCSGAEVTI-----RAAIKAT 263 (354)
T ss_pred HHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccc-cHHHHHHHHHhhccccCCCeEEEccCchHHH-----HHHHHHh
Confidence 334456666666566667899999999876554422 222333333332 1 3489999988887754 4456676
Q ss_pred HcC
Q 027992 84 QAA 86 (215)
Q Consensus 84 ~~~ 86 (215)
+..
T Consensus 264 r~g 266 (354)
T KOG0024|consen 264 RSG 266 (354)
T ss_pred ccC
Confidence 653
No 176
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=38.14 E-value=2.4e+02 Score=24.76 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=48.4
Q ss_pred EEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 14 VVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 14 vV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
|.-++..-+...++++|++++.- ....++.+.++.++......+|++++.=|.+.=- .+.+.++++
T Consensus 200 I~dsN~~~l~a~l~~~G~e~~~~-giv~Dd~~~l~~~i~~a~~~~DviItsGG~SvG~-~D~v~~~l~ 265 (404)
T COG0303 200 IYDSNSYMLAALLERAGGEVVDL-GIVPDDPEALREAIEKALSEADVIITSGGVSVGD-ADYVKAALE 265 (404)
T ss_pred EEecCHHHHHHHHHHcCCceeec-cccCCCHHHHHHHHHHhhhcCCEEEEeCCccCcc-hHhHHHHHH
Confidence 44455566788899999987432 2344677788888877655689999999988876 777777776
No 177
>PRK10073 putative glycosyl transferase; Provisional
Probab=38.13 E-value=2.4e+02 Score=23.62 Aligned_cols=68 Identities=12% Similarity=0.234 Sum_probs=42.6
Q ss_pred cEEEEcCc-----HHH-HHHHHHcC-CeEEeCCCCCCCchHH-HHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 12 GLVVATDD-----EKI-AECCQQFG-ADVIMTSESCRNGTER-CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 12 ~ivV~td~-----~~i-~~~~~~~g-~~v~~~~~~~~~~~~~-i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+|+|+-|. .++ .+.+++.. +.++ ..+. +|.+. ...|++.. ..|+|+++++|-= +.|+.+..+++.+
T Consensus 37 EIIiVdDgStD~t~~i~~~~~~~~~~i~vi-~~~n--~G~~~arN~gl~~a--~g~yi~flD~DD~-~~p~~l~~l~~~~ 110 (328)
T PRK10073 37 EIIIVNDGSTDNSVEIAKHYAENYPHVRLL-HQAN--AGVSVARNTGLAVA--TGKYVAFPDADDV-VYPTMYETLMTMA 110 (328)
T ss_pred EEEEEeCCCCccHHHHHHHHHhhCCCEEEE-ECCC--CChHHHHHHHHHhC--CCCEEEEECCCCc-cChhHHHHHHHHH
Confidence 67776532 222 23344332 3444 3333 45543 45677765 5689999999986 5789999999987
Q ss_pred Hc
Q 027992 84 QA 85 (215)
Q Consensus 84 ~~ 85 (215)
..
T Consensus 111 ~~ 112 (328)
T PRK10073 111 LE 112 (328)
T ss_pred Hh
Confidence 64
No 178
>PRK00536 speE spermidine synthase; Provisional
Probab=37.88 E-value=70 Score=26.20 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=26.3
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992 57 KYDIVVNIQGDEPLIEPEIIDGVVKALQAA 86 (215)
Q Consensus 57 ~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~ 86 (215)
..+++++.|+.+|+..++.+..+.+.+++.
T Consensus 162 ~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~ 191 (262)
T PRK00536 162 KEDGVFISVAKHPLLEHVSMQNALKNMGDF 191 (262)
T ss_pred CCCcEEEECCCCcccCHHHHHHHHHHHHhh
Confidence 568999999999999999999988888753
No 179
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=37.40 E-value=1.1e+02 Score=19.96 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHHHHHcCCCceEEeecccC
Q 027992 69 PLIEPEIIDGVVKALQAAPDAVFSTAVTSL 98 (215)
Q Consensus 69 Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~ 98 (215)
|......++-|++..++ +|-.+.....++
T Consensus 36 ~a~~~~~~~~cl~~v~~-cDifI~ilG~rY 64 (83)
T PF13271_consen 36 PASDQSPLEICLKEVDE-CDIFILILGNRY 64 (83)
T ss_pred cCCCCCHHHHHHHHHhh-CCEEEEeecccc
Confidence 44455556666666643 465555554444
No 180
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=36.57 E-value=1.1e+02 Score=26.61 Aligned_cols=72 Identities=13% Similarity=0.226 Sum_probs=42.5
Q ss_pred cEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCchHHH-----HH-HHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 12 GLVVATDD--EKIAECCQQFGADVIMTSESCRNGTERC-----NE-ALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 12 ~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~~~i-----~~-~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+|-|+.|| .+++..+..+.+-++.-+..-...++++ +. +-+++ ..+.+|+.|+.+|+.+|+..=+..+..
T Consensus 347 Rv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l--~e~Gl~VvQags~y~tp~vfw~i~aTi 424 (508)
T COG4262 347 RVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHL--AETGLMVVQAGSPYFTPRVFWRIDATI 424 (508)
T ss_pred eeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhc--CcCceEEEecCCCccCCceeeeehhHH
Confidence 45555544 4555555555554443332211223332 11 22233 458899999999999999988888777
Q ss_pred Hc
Q 027992 84 QA 85 (215)
Q Consensus 84 ~~ 85 (215)
++
T Consensus 425 k~ 426 (508)
T COG4262 425 KS 426 (508)
T ss_pred Hh
Confidence 65
No 181
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=36.39 E-value=2.7e+02 Score=23.66 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=44.8
Q ss_pred CcEEEEcCc-----HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 11 CGLVVATDD-----EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 11 d~ivV~td~-----~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
|+|++..+. ..+...++.+|+++..-+. .+.+.+..++ .++.+.|++-.+.+|..+..+++++.+..++
T Consensus 91 d~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~---~d~~~l~~~i---~~~tklv~le~P~NP~~~~~dl~~I~~la~~ 164 (366)
T PRK08247 91 DELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT---ASLKAIEQAI---TPNTKAIFIETPTNPLMQETDIAAIAKIAKK 164 (366)
T ss_pred CEEEEecCCcCcHHHHHHHHhhccCceEEEECC---CCHHHHHHhc---ccCceEEEEECCCCCCCcHHHHHHHHHHHHH
Confidence 566666541 1234455668888743221 2334444333 3356788888999999999999999998876
Q ss_pred C
Q 027992 86 A 86 (215)
Q Consensus 86 ~ 86 (215)
+
T Consensus 165 ~ 165 (366)
T PRK08247 165 H 165 (366)
T ss_pred c
Confidence 4
No 182
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=36.38 E-value=1.8e+02 Score=21.75 Aligned_cols=73 Identities=18% Similarity=0.305 Sum_probs=42.0
Q ss_pred CcEEEEcC--cHHHHHHHH-H---cCCeEEeCCCC-CCCchH-HHHHHHHHhcC---------CCCEEEEecCCCCCCCH
Q 027992 11 CGLVVATD--DEKIAECCQ-Q---FGADVIMTSES-CRNGTE-RCNEALQKLEK---------KYDIVVNIQGDEPLIEP 73 (215)
Q Consensus 11 d~ivV~td--~~~i~~~~~-~---~g~~v~~~~~~-~~~~~~-~i~~~l~~~~~---------~~d~v~~~~~d~Pli~~ 73 (215)
.+|+|+-| .+...++++ . .++.++.++.. -..|.. .+..|+..+.. ..|+|+++++|.- +.+
T Consensus 26 ~eIivvdd~S~D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~ 104 (191)
T cd06436 26 FLVLVIDDASDDDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDP 104 (191)
T ss_pred eEEEEEECCCCcCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCH
Confidence 46777664 233444444 2 13444443211 113443 45566655421 2479999999987 788
Q ss_pred HHHHHHHHHHH
Q 027992 74 EIIDGVVKALQ 84 (215)
Q Consensus 74 ~~i~~~i~~~~ 84 (215)
..+..+...+.
T Consensus 105 ~~l~~~~~~~~ 115 (191)
T cd06436 105 NALEAVAPYFS 115 (191)
T ss_pred hHHHHHHHhhc
Confidence 88988777664
No 183
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=35.82 E-value=51 Score=24.13 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.0
Q ss_pred cEEEEcCcHHHHHHHHHcCCeEE
Q 027992 12 GLVVATDDEKIAECCQQFGADVI 34 (215)
Q Consensus 12 ~ivV~td~~~i~~~~~~~g~~v~ 34 (215)
..+|+|+|.++++-+++.|+.++
T Consensus 99 ~~iVaTnD~eLk~rlr~~GIPvi 121 (136)
T COG1412 99 RYIVATNDKELKRRLRENGIPVI 121 (136)
T ss_pred CEEEEeCCHHHHHHHHHcCCCEE
Confidence 68999999999988888898874
No 184
>PRK05967 cystathionine beta-lyase; Provisional
Probab=35.26 E-value=3e+02 Score=23.93 Aligned_cols=57 Identities=11% Similarity=0.076 Sum_probs=39.3
Q ss_pred HHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992 24 ECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 86 (215)
Q Consensus 24 ~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~ 86 (215)
+.++.+|+++..-+.. +.+.+..++ .++...|++-.+.+|..+..+|+++.+..+++
T Consensus 122 ~~l~~~Gi~v~~vd~~---~~e~l~~al---~~~TklV~lesPsNP~l~v~dl~~I~~la~~~ 178 (395)
T PRK05967 122 TMLKRLGVEVEYYDPE---IGAGIAKLM---RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRH 178 (395)
T ss_pred HHHHhcCeEEEEeCCC---CHHHHHHhc---CcCceEEEEECCCCCCCcHHHHHHHHHHHHHh
Confidence 5678889987322211 223343333 34567888888999999999999999988763
No 185
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=35.18 E-value=99 Score=19.43 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=17.3
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHHhhcC
Q 027992 187 IKVDHEAHGVDAPEDVEKIESFMRERNL 214 (215)
Q Consensus 187 ~~~~~~~idIdt~~Dl~~ae~il~~~~~ 214 (215)
..+.++ .||..+.|+ +|-+++-.|+
T Consensus 46 ~vP~~R-~Di~~~~Dl--iEEiaR~yGY 70 (70)
T PF03484_consen 46 TVPSYR-FDIEHEEDL--IEEIARIYGY 70 (70)
T ss_dssp EEETTS-TT-SSHHHH--HHHHHHHHTG
T ss_pred EcCCCc-CCcCcccHH--HHHHHHHhCC
Confidence 334455 999999998 8888776553
No 186
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=35.16 E-value=2.2e+02 Score=22.36 Aligned_cols=71 Identities=14% Similarity=0.323 Sum_probs=45.1
Q ss_pred CcEEEEcCc-----HHHH-HHHHHcCC-eEE--eCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 11 CGLVVATDD-----EKIA-ECCQQFGA-DVI--MTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 11 d~ivV~td~-----~~i~-~~~~~~g~-~v~--~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
-+||++-|. .+++ ++.+-+|- ++. .|...+ |.. ...+|+..+ .-+.+++++||.- =.|+.|-++|
T Consensus 36 ~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~kl--GLgtAy~hgl~~a--~g~fiviMDaDls-HhPk~ipe~i 110 (238)
T KOG2978|consen 36 YEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKL--GLGTAYIHGLKHA--TGDFIVIMDADLS-HHPKFIPEFI 110 (238)
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcc--cchHHHHhhhhhc--cCCeEEEEeCccC-CCchhHHHHH
Confidence 356666642 3333 33334664 343 344443 443 567898887 5689999999964 3678888998
Q ss_pred HHHHcC
Q 027992 81 KALQAA 86 (215)
Q Consensus 81 ~~~~~~ 86 (215)
+...++
T Consensus 111 ~lq~~~ 116 (238)
T KOG2978|consen 111 RLQKEG 116 (238)
T ss_pred HHhhcc
Confidence 887654
No 187
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=34.97 E-value=2.9e+02 Score=23.62 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=41.1
Q ss_pred CcEEEEcC-cHHHHHHHHHcCCeEEeCCC-CCCCchHHHHHHHHHhcCCCCEEEEecCCCC---CCCHHHHHHHHHHHH
Q 027992 11 CGLVVATD-DEKIAECCQQFGADVIMTSE-SCRNGTERCNEALQKLEKKYDIVVNIQGDEP---LIEPEIIDGVVKALQ 84 (215)
Q Consensus 11 d~ivV~td-~~~i~~~~~~~g~~v~~~~~-~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~P---li~~~~i~~~i~~~~ 84 (215)
|.|++... -.+..-.++..|++++.-+. ++.-+.+.+..++. .+.+.|++..|.+| +++.+.|.++++...
T Consensus 100 d~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~---~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~ 175 (356)
T COG0079 100 DTVLIPEPTFSMYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIR---DKTKLVFLCNPNNPTGTLLPREELRALLEALP 175 (356)
T ss_pred CEEEEcCCChHHHHHHHHhcCCeEEEecccccccCHHHHHHhhh---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC
Confidence 34444442 24444455556666532221 12223334443333 25789999999999 688899988888764
No 188
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=34.50 E-value=2.8e+02 Score=24.25 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=45.8
Q ss_pred CcEEEEcCc-----HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 11 CGLVVATDD-----EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 11 d~ivV~td~-----~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
|.|+++.+- .-...+.+++|+++..-... ....+..++.. ++.+.|.+=.+++|++.-.+|.++.+...+
T Consensus 103 D~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~---~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~ 177 (396)
T COG0626 103 DHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPG---DDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLAKA 177 (396)
T ss_pred CEEEecCCccchHHHHHHHHHHhcCeEEEEECCC---ChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHHHh
Confidence 555555441 23346778899998432211 22222222221 367899999999999999999999888865
Q ss_pred C
Q 027992 86 A 86 (215)
Q Consensus 86 ~ 86 (215)
.
T Consensus 178 ~ 178 (396)
T COG0626 178 Y 178 (396)
T ss_pred c
Confidence 4
No 189
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=33.98 E-value=2.1e+02 Score=24.49 Aligned_cols=76 Identities=24% Similarity=0.107 Sum_probs=46.0
Q ss_pred CccccccCCCCcEEEEcC---cHHHHHHHHHcCCeEEeCCCC-C--CCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCH
Q 027992 1 MLVMCHSFLFCGLVVATD---DEKIAECCQQFGADVIMTSES-C--RNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEP 73 (215)
Q Consensus 1 ~~~a~~~~~~d~ivV~td---~~~i~~~~~~~g~~v~~~~~~-~--~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~ 73 (215)
|-+|-+.+....-|++|. ...+++.++++|++++.-|-- . ..+...+..++..+. .++|++++.. +
T Consensus 1 ~~~~~~~pL~g~rIlvtr~~~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS-------~ 73 (381)
T PRK07239 1 MAQADSAPLAGFTVGVTAARRAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATT-------G 73 (381)
T ss_pred CCCCCCCCCCCcEEEEeccCCHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeC-------h
Confidence 556777788888889994 355667788899987543211 0 012234455565553 4689998765 4
Q ss_pred HHHHHHHHHH
Q 027992 74 EIIDGVVKAL 83 (215)
Q Consensus 74 ~~i~~~i~~~ 83 (215)
.-++.+.+.+
T Consensus 74 ngv~~~~~~l 83 (381)
T PRK07239 74 IGFRGWVEAA 83 (381)
T ss_pred HHHHHHHHHH
Confidence 4455554443
No 190
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=33.97 E-value=2.1e+02 Score=21.65 Aligned_cols=66 Identities=17% Similarity=0.307 Sum_probs=41.9
Q ss_pred cHHHHHHHHHcCCeEEeCC---CCCCC-chHHH-HHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 19 DEKIAECCQQFGADVIMTS---ESCRN-GTERC-NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 19 ~~~i~~~~~~~g~~v~~~~---~~~~~-~~~~i-~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
++.+.+++++.|..++.-. .++.. +...+ ...+..+. +-++|++|+++..--+.+.+..+|..+++
T Consensus 109 ~~~~~~~l~~~G~~~v~w~~~~~D~~~~~~~~i~~~~~~~~~-~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~ 179 (191)
T TIGR02764 109 NKAVLKAAESLGYTVVHWSVDSRDWKNPGVESIVDRVVKNTK-PGDIILLHASDSAKQTVKALPTIIKKLKE 179 (191)
T ss_pred CHHHHHHHHHcCCeEEEecCCCCccCCCCHHHHHHHHHhcCC-CCCEEEEeCCCCcHhHHHHHHHHHHHHHH
Confidence 4667788888898864322 22221 22222 34445543 45788888877666778888999998875
No 191
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=33.23 E-value=2.3e+02 Score=21.84 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 46 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 46 ~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
.+..|+... ..|+++++++|.=+ .++.|.++...+.
T Consensus 78 a~n~g~~~a--~~~~i~~~DaD~~~-~~~~l~~~~~~~~ 113 (232)
T cd06437 78 ALAEGMKVA--KGEYVAIFDADFVP-PPDFLQKTPPYFA 113 (232)
T ss_pred HHHHHHHhC--CCCEEEEEcCCCCC-ChHHHHHhhhhhc
Confidence 456677765 67999999999954 8999999766553
No 192
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=33.01 E-value=2e+02 Score=24.88 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=41.5
Q ss_pred HHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEE
Q 027992 22 IAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 92 (215)
Q Consensus 22 i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~ 92 (215)
+...+.++|+++..-+. ++.+.+..+++ ++...|++=.+.+|++..-+|.++.+..++..+..+.
T Consensus 111 ~~~~l~~~gv~v~~~d~---~d~~~l~~~l~---~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~v 175 (386)
T PF01053_consen 111 LEELLPRFGVEVTFVDP---TDLEALEAALR---PNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVV 175 (386)
T ss_dssp HHHCHHHTTSEEEEEST---TSHHHHHHHHC---TTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEE
T ss_pred hhhhhcccCcEEEEeCc---hhHHHHHhhcc---ccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEE
Confidence 34557778999733221 34555555544 3667899999999999999999999988764334333
No 193
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=32.93 E-value=2.8e+02 Score=22.98 Aligned_cols=80 Identities=20% Similarity=0.410 Sum_probs=44.4
Q ss_pred ccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHH----HHHHHHHh---cCCCCEEEEecCCCC------CCC
Q 027992 6 HSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTER----CNEALQKL---EKKYDIVVNIQGDEP------LIE 72 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~----i~~~l~~~---~~~~d~v~~~~~d~P------li~ 72 (215)
+-..+.++++|==++.+.++++++=.... ..+. ..| +-+|.+.+ +..+| +++++++-| |.+
T Consensus 96 kh~~ve~i~~VEID~~Vi~~ar~~l~~~~----~~~~-dpRv~i~i~Dg~~~v~~~~~~fD-vIi~D~tdp~gp~~~Lft 169 (282)
T COG0421 96 KHLPVERITMVEIDPAVIELARKYLPEPS----GGAD-DPRVEIIIDDGVEFLRDCEEKFD-VIIVDSTDPVGPAEALFT 169 (282)
T ss_pred hcCCcceEEEEEcCHHHHHHHHHhccCcc----cccC-CCceEEEeccHHHHHHhCCCcCC-EEEEcCCCCCCcccccCC
Confidence 33456666666667777788877522110 0001 112 34444444 33467 555677777 566
Q ss_pred HHHHHHHHHHHHcCCCceEEe
Q 027992 73 PEIIDGVVKALQAAPDAVFST 93 (215)
Q Consensus 73 ~~~i~~~i~~~~~~~~~~i~~ 93 (215)
.+-++.|-+.++ +++++++
T Consensus 170 ~eFy~~~~~~L~--~~Gi~v~ 188 (282)
T COG0421 170 EEFYEGCRRALK--EDGIFVA 188 (282)
T ss_pred HHHHHHHHHhcC--CCcEEEE
Confidence 777777777664 3566664
No 194
>PRK00549 competence damage-inducible protein A; Provisional
Probab=32.93 E-value=1.3e+02 Score=26.47 Aligned_cols=57 Identities=25% Similarity=0.362 Sum_probs=39.0
Q ss_pred EEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCC
Q 027992 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPL 70 (215)
Q Consensus 13 ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pl 70 (215)
-+.-|+...+++.+.++|+++... .-..++...+..+++.+....|+|++.=|..|-
T Consensus 16 ~i~DtN~~~L~~~L~~~G~~v~~~-~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlGpt 72 (414)
T PRK00549 16 QIVNTNAQFLSEKLAELGIDVYHQ-TVVGDNPERLLSALEIAEERSDLIITTGGLGPT 72 (414)
T ss_pred ceeEhhHHHHHHHHHHCCCeEEEE-EEeCCCHHHHHHHHHHhccCCCEEEECCCCCCC
Confidence 345666788889999999987421 133356677888887665677888886555553
No 195
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=32.63 E-value=2.3e+02 Score=21.71 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=40.9
Q ss_pred CCcEEEEcCc--HHHHHHHH--HcCCeEEeCCCCCCCchH-HHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 10 FCGLVVATDD--EKIAECCQ--QFGADVIMTSESCRNGTE-RCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 10 ~d~ivV~td~--~~i~~~~~--~~g~~v~~~~~~~~~~~~-~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
..+|+|+=++ +......+ ..++.++..+.. .|.+ ....|++... .+.|+++++++|.-+ .++.+.+++
T Consensus 24 ~~~iivvDn~s~~~~~~~~~~~~~~i~~i~~~~n--~G~~~a~N~g~~~a~~~~~d~v~~lD~D~~~-~~~~l~~l~ 97 (237)
T cd02526 24 VDKVVVVDNSSGNDIELRLRLNSEKIELIHLGEN--LGIAKALNIGIKAALENGADYVLLFDQDSVP-PPDMVEKLL 97 (237)
T ss_pred CCEEEEEeCCCCccHHHHhhccCCcEEEEECCCc--eehHHhhhHHHHHHHhCCCCEEEEECCCCCc-CHhHHHHHH
Confidence 4566666432 22222222 234555555444 3443 4556666653 267999999999986 799999996
No 196
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=32.46 E-value=2.3e+02 Score=23.75 Aligned_cols=55 Identities=25% Similarity=0.421 Sum_probs=35.4
Q ss_pred cEEEEcCcHHHHHHHHHcCCeEEeCCCCC-CCchHHHHHHHHHhcCCCCEEEEecCCC
Q 027992 12 GLVVATDDEKIAECCQQFGADVIMTSESC-RNGTERCNEALQKLEKKYDIVVNIQGDE 68 (215)
Q Consensus 12 ~ivV~td~~~i~~~~~~~g~~v~~~~~~~-~~~~~~i~~~l~~~~~~~d~v~~~~~d~ 68 (215)
.||.++..+-++++.+.+|+..+.....- ...+..+..|+... +++.|++|.-+.
T Consensus 98 ~vVAv~~g~g~~~lf~~~Gv~~vi~ggqt~nPS~~dl~~Ai~~~--~a~~VivLPNn~ 153 (313)
T PF13684_consen 98 GVVAVAPGEGLAELFRSLGVDVVISGGQTMNPSTEDLLNAIEKV--GADEVIVLPNNK 153 (313)
T ss_pred EEEEEecCccHHHHHHhCCCeEEEeCCCCCCCCHHHHHHHHHhC--CCCeEEEEeCCc
Confidence 46666688899999999998765433221 11233567777765 566777766543
No 197
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.40 E-value=2e+02 Score=20.94 Aligned_cols=57 Identities=12% Similarity=-0.021 Sum_probs=27.5
Q ss_pred HHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 23 AECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 23 ~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
+.+++..|++|+.-... ...+.+..+... .++|+|.+-.= =--+-..+.++++.+++
T Consensus 22 ~~~l~~~GfeVi~LG~~--v~~e~~v~aa~~--~~adiVglS~l--~~~~~~~~~~~~~~l~~ 78 (134)
T TIGR01501 22 DHAFTNAGFNVVNLGVL--SPQEEFIKAAIE--TKADAILVSSL--YGHGEIDCKGLRQKCDE 78 (134)
T ss_pred HHHHHHCCCEEEECCCC--CCHHHHHHHHHH--cCCCEEEEecc--cccCHHHHHHHHHHHHH
Confidence 45567778887643222 223344444333 25666555211 11233346667766653
No 198
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=31.40 E-value=1.6e+02 Score=21.96 Aligned_cols=63 Identities=6% Similarity=0.128 Sum_probs=36.9
Q ss_pred cHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHh--cCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 19 DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 19 ~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~--~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
...++..++++|+++.... -..++.+.+..+++.+ ...+|.|++.=|+.+= ..+...++++.+
T Consensus 24 ~~~l~~~L~~~G~~v~~~~-iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g-~~D~t~eal~~l 88 (163)
T TIGR02667 24 GQYLVERLTEAGHRLADRA-IVKDDIYQIRAQVSAWIADPDVQVILITGGTGFT-GRDVTPEALEPL 88 (163)
T ss_pred HHHHHHHHHHCCCeEEEEE-EcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC-CCCCcHHHHHHH
Confidence 3567788888998864221 2335666777777654 2467888877555553 333333444443
No 199
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=31.13 E-value=3.3e+02 Score=23.06 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=45.2
Q ss_pred ccCCCCcEEEEcCcHHHHHHHHH-cCCeEEeCCCCCCCchHHHHHHHHHhc--CCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 6 HSFLFCGLVVATDDEKIAECCQQ-FGADVIMTSESCRNGTERCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~i~~~~~~-~g~~v~~~~~~~~~~~~~i~~~l~~~~--~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
+.....+||++-.+++-.++|++ .|+.++..+.+ . .....+..+. ..+|.++-..| ++..++.+++.
T Consensus 189 ~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~--~---~~~~~~~~~t~g~g~D~vie~~G-----~~~~~~~ai~~ 258 (350)
T COG1063 189 KLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE--D---DAGAEILELTGGRGADVVIEAVG-----SPPALDQALEA 258 (350)
T ss_pred HHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc--c---cHHHHHHHHhCCCCCCEEEECCC-----CHHHHHHHHHH
Confidence 44455677777566777788888 67776554433 1 1112222222 35899999999 66789999998
Q ss_pred HHc
Q 027992 83 LQA 85 (215)
Q Consensus 83 ~~~ 85 (215)
.+.
T Consensus 259 ~r~ 261 (350)
T COG1063 259 LRP 261 (350)
T ss_pred hcC
Confidence 865
No 200
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.06 E-value=1.9e+02 Score=21.00 Aligned_cols=57 Identities=12% Similarity=-0.014 Sum_probs=32.2
Q ss_pred HHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 23 AECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 23 ~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
+-.++..|++++.-... -..+.+..++... ++|+|.+-. -++ -+...+.++++.+++
T Consensus 24 ~~~lr~~G~eVi~LG~~--vp~e~i~~~a~~~--~~d~V~lS~-~~~-~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 24 DRALTEAGFEVINLGVM--TSQEEFIDAAIET--DADAILVSS-LYG-HGEIDCRGLREKCIE 80 (137)
T ss_pred HHHHHHCCCEEEECCCC--CCHHHHHHHHHHc--CCCEEEEcC-ccc-cCHHHHHHHHHHHHh
Confidence 35567778888642222 2234555555543 567666533 222 456667777777754
No 201
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=30.83 E-value=2.1e+02 Score=20.68 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=7.4
Q ss_pred HHHHHHcCCeEEe
Q 027992 23 AECCQQFGADVIM 35 (215)
Q Consensus 23 ~~~~~~~g~~v~~ 35 (215)
+...+..|++|+.
T Consensus 20 ~~~L~~~GfeVid 32 (128)
T cd02072 20 DHAFTEAGFNVVN 32 (128)
T ss_pred HHHHHHCCCEEEE
Confidence 3445556777653
No 202
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=29.88 E-value=88 Score=23.59 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=20.5
Q ss_pred cccCCCCcEEEEcCcHH---HHHHHHHcCCeEE
Q 027992 5 CHSFLFCGLVVATDDEK---IAECCQQFGADVI 34 (215)
Q Consensus 5 ~~~~~~d~ivV~td~~~---i~~~~~~~g~~v~ 34 (215)
+-++.+|.++++|.|.. +...+++.|.+|+
T Consensus 101 ~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~ 133 (160)
T TIGR00288 101 IYNPNIDAVALVTRDADFLPVINKAKENGKETI 133 (160)
T ss_pred hccCCCCEEEEEeccHhHHHHHHHHHHCCCEEE
Confidence 33578899888885533 3455677788884
No 203
>PRK08114 cystathionine beta-lyase; Provisional
Probab=29.74 E-value=3.5e+02 Score=23.53 Aligned_cols=70 Identities=7% Similarity=0.050 Sum_probs=45.2
Q ss_pred CcEEEEcCc-----HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 11 CGLVVATDD-----EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 11 d~ivV~td~-----~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
|+|+++.+. .-+...++++|+++..-+. .+.+.+..++ .++...|.+=.+.+|...-.+|.++.+..++
T Consensus 102 D~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~---~d~~~l~~~l---~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~ 175 (395)
T PRK08114 102 DHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP---LIGADIAKLI---QPNTKVVFLESPGSITMEVHDVPAIVAAVRS 175 (395)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC---CCHHHHHHhc---CCCceEEEEECCCCCCCEeecHHHHHHHHHH
Confidence 555554432 2233557789998833221 2333444443 3356789999999999999999998888876
Q ss_pred C
Q 027992 86 A 86 (215)
Q Consensus 86 ~ 86 (215)
.
T Consensus 176 ~ 176 (395)
T PRK08114 176 V 176 (395)
T ss_pred h
Confidence 4
No 204
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=28.70 E-value=4.1e+02 Score=23.78 Aligned_cols=73 Identities=12% Similarity=0.236 Sum_probs=43.1
Q ss_pred CcEEEEcC-cHHHHHHHHHcCCeEEeCC--CC--CCCchHHHHHHHHHhcCCCCEEEEecCCCC---CCCHHHHHHHHHH
Q 027992 11 CGLVVATD-DEKIAECCQQFGADVIMTS--ES--CRNGTERCNEALQKLEKKYDIVVNIQGDEP---LIEPEIIDGVVKA 82 (215)
Q Consensus 11 d~ivV~td-~~~i~~~~~~~g~~v~~~~--~~--~~~~~~~i~~~l~~~~~~~d~v~~~~~d~P---li~~~~i~~~i~~ 82 (215)
|+|+|... .......++.+|++++.-+ ++ +.-+.+.+..+ +......+++..+.+| ..+.+.+.++++.
T Consensus 233 d~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~---~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~ 309 (517)
T PRK13355 233 DEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSK---ITSRTKAIVIINPNNPTGALYPREVLQQIVDI 309 (517)
T ss_pred CEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHh---cCcCceEEEEECCCCCCCcCcCHHHHHHHHHH
Confidence 45666553 2444556666777753221 11 11122233322 2345678888888888 6889999999988
Q ss_pred HHcC
Q 027992 83 LQAA 86 (215)
Q Consensus 83 ~~~~ 86 (215)
.+++
T Consensus 310 a~~~ 313 (517)
T PRK13355 310 AREH 313 (517)
T ss_pred HHHc
Confidence 8763
No 205
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=28.41 E-value=2.3e+02 Score=24.55 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=42.8
Q ss_pred EcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 16 ATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 16 ~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
-++..-+...++++|+++.... .+.++...+..++..+..++|+|+..=|+++= ..+.+.++++.+
T Consensus 194 dsn~~~l~~~l~~~G~~~~~~~-~v~Dd~~~i~~~l~~a~~~~DliittGG~s~g-~~D~~~~al~~~ 259 (394)
T cd00887 194 DSNSYMLAALLRELGAEVVDLG-IVPDDPEALREALEEALEEADVVITSGGVSVG-DYDFVKEVLEEL 259 (394)
T ss_pred EChHHHHHHHHHHCCCEEEEec-eeCCCHHHHHHHHHHHhhCCCEEEEeCCCCCC-cchhHHHHHHhC
Confidence 3445567788899999874322 34456677888877664468988887666654 345555655544
No 206
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.31 E-value=2.4e+02 Score=23.32 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=14.1
Q ss_pred CcEEEEcCcHHHHHHHHHcCCeEE
Q 027992 11 CGLVVATDDEKIAECCQQFGADVI 34 (215)
Q Consensus 11 d~ivV~td~~~i~~~~~~~g~~v~ 34 (215)
+-+.|.|+.+....+|+++|+.++
T Consensus 118 ~i~~visn~~~~~~lA~~~gIp~~ 141 (286)
T PRK06027 118 EIAAVISNHDDLRSLVERFGIPFH 141 (286)
T ss_pred EEEEEEEcChhHHHHHHHhCCCEE
Confidence 334555566666666666676653
No 207
>PRK03670 competence damage-inducible protein A; Provisional
Probab=27.79 E-value=3.2e+02 Score=22.19 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=37.9
Q ss_pred EEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHh-cCCCCEEEEecCCCCC
Q 027992 13 LVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPL 70 (215)
Q Consensus 13 ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~-~~~~d~v~~~~~d~Pl 70 (215)
-++.|+...+++.+.+.|+++... .-..++...+..+++.+ ....|+|++.=|..|-
T Consensus 16 ~i~dtN~~~la~~L~~~G~~v~~~-~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt 73 (252)
T PRK03670 16 NTVDSNSAFIAQKLTEKGYWVRRI-TTVGDDVEEIKSVVLEILSRKPEVLVISGGLGPT 73 (252)
T ss_pred eEEehhHHHHHHHHHHCCCEEEEE-EEcCCCHHHHHHHHHHHhhCCCCEEEECCCccCC
Confidence 345666778888899999987321 12335666777777664 3346888887776654
No 208
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=27.79 E-value=78 Score=20.32 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=16.6
Q ss_pred CCCcEEEEcC--cHHHHHHHHHcCCe
Q 027992 9 LFCGLVVATD--DEKIAECCQQFGAD 32 (215)
Q Consensus 9 ~~d~ivV~td--~~~i~~~~~~~g~~ 32 (215)
.+++++|+|. ++...+.|+++|++
T Consensus 45 k~~r~ivVtp~id~~a~~~A~~LGIe 70 (70)
T PF07788_consen 45 KVDRLIVVTPYIDDRAKEMAEELGIE 70 (70)
T ss_pred CcceEEEEEeecCHHHHHHHHHhCCC
Confidence 3567777774 56677788888863
No 209
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=27.71 E-value=2.9e+02 Score=25.19 Aligned_cols=54 Identities=26% Similarity=0.372 Sum_probs=36.6
Q ss_pred cEEEEcCcHHHHHHHHHcCCeEEeCCCCC-CCchHHHHHHHHHhcCCCCEEEEecCC
Q 027992 12 GLVVATDDEKIAECCQQFGADVIMTSESC-RNGTERCNEALQKLEKKYDIVVNIQGD 67 (215)
Q Consensus 12 ~ivV~td~~~i~~~~~~~g~~v~~~~~~~-~~~~~~i~~~l~~~~~~~d~v~~~~~d 67 (215)
-||.++..+-++++.+++|+.++...... ...+..+.+++... +.+.|++|.-+
T Consensus 316 ~ivAv~~g~g~~~~f~~~Ga~~vi~ggqt~nPS~~dll~ai~~~--~a~~V~iLPNn 370 (530)
T TIGR03599 316 AIVAVAPGEGIAELFKSLGADVVIEGGQTMNPSTEDILKAIEKV--NAKNVFVLPNN 370 (530)
T ss_pred EEEEEcCCchHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHhC--CCCeEEEecCC
Confidence 36667788999999999999875432221 11234577777776 56778877766
No 210
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=25.20 E-value=4.7e+02 Score=23.00 Aligned_cols=63 Identities=10% Similarity=0.187 Sum_probs=39.8
Q ss_pred HHHHHHHcCCeE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEE
Q 027992 22 IAECCQQFGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 92 (215)
Q Consensus 22 i~~~~~~~g~~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~ 92 (215)
+.....++|++. +.... ...-+.+ .+.++.+.|.+=.+++|++...+|.++.+...+ ++..+.
T Consensus 133 l~~~~~~~gie~~~vd~~----~~~~~~~---~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~-~g~~vv 196 (409)
T KOG0053|consen 133 LRKFLPKFGGEGDFVDVD----DLKKILK---AIKENTKAVFLESPSNPLLKVPDIEKLARLAHK-YGFLVV 196 (409)
T ss_pred HHHHHHHhCceeeeechh----hHHHHHH---hhccCceEEEEECCCCCccccccHHHHHHHHhh-CCCEEE
Confidence 345566677765 22111 1122222 333457899999999999999999998887754 454443
No 211
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=24.64 E-value=3.6e+02 Score=25.72 Aligned_cols=72 Identities=14% Similarity=0.297 Sum_probs=42.5
Q ss_pred cEEEEc--CcH----HHHHHHHHcC-CeEEeCCCCCCCchH-HHHHHHHHh-------cCCCCEEEEecCCCCCCCHHHH
Q 027992 12 GLVVAT--DDE----KIAECCQQFG-ADVIMTSESCRNGTE-RCNEALQKL-------EKKYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 12 ~ivV~t--d~~----~i~~~~~~~g-~~v~~~~~~~~~~~~-~i~~~l~~~-------~~~~d~v~~~~~d~Pli~~~~i 76 (215)
+|+|++ +|+ .+.+++++++ +.++..+..-.+|.+ .+.+++..+ ..++++++++++|. .++|..+
T Consensus 95 eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~-~v~pd~L 173 (727)
T PRK11234 95 HIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAED-VISPMEL 173 (727)
T ss_pred EEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCC-CCChhHH
Confidence 677775 332 3345566664 444332322124444 456666654 23568899999997 6889999
Q ss_pred HHHHHHHHc
Q 027992 77 DGVVKALQA 85 (215)
Q Consensus 77 ~~~i~~~~~ 85 (215)
. .++.+..
T Consensus 174 ~-~~~~l~~ 181 (727)
T PRK11234 174 R-LFNYLVE 181 (727)
T ss_pred H-HHHhhcC
Confidence 7 5566543
No 212
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=24.41 E-value=92 Score=21.09 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.1
Q ss_pred EEEEcCcHHHHHHHH-HcCCeE
Q 027992 13 LVVATDDEKIAECCQ-QFGADV 33 (215)
Q Consensus 13 ivV~td~~~i~~~~~-~~g~~v 33 (215)
.+|+|.|.+++.-++ ..|+.+
T Consensus 67 ~~VaT~D~~Lr~~lr~~~GvPv 88 (101)
T PF04900_consen 67 YIVATQDKELRRRLRKIPGVPV 88 (101)
T ss_pred EEEEecCHHHHHHHhcCCCCCE
Confidence 899999999998888 678876
No 213
>PRK10063 putative glycosyl transferase; Provisional
Probab=24.02 E-value=3.7e+02 Score=21.36 Aligned_cols=54 Identities=9% Similarity=0.179 Sum_probs=31.2
Q ss_pred cEEEEcC--cHHHHHHHHHcC----CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCC
Q 027992 12 GLVVATD--DEKIAECCQQFG----ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPL 70 (215)
Q Consensus 12 ~ivV~td--~~~i~~~~~~~g----~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pl 70 (215)
+|||+=| .+...+++++++ +.++. .+. .|.. ....|+... ..|+|+++++|-=+
T Consensus 35 EiIVvDdgStD~t~~i~~~~~~~~~i~~i~-~~~--~G~~~A~N~Gi~~a--~g~~v~~ld~DD~~ 95 (248)
T PRK10063 35 EWIVVDGGSNDGTREFLENLNGIFNLRFVS-EPD--NGIYDAMNKGIAMA--QGRFALFLNSGDIF 95 (248)
T ss_pred EEEEEECcCcccHHHHHHHhcccCCEEEEE-CCC--CCHHHHHHHHHHHc--CCCEEEEEeCCccc
Confidence 5555532 233455566653 34443 333 3444 566788776 56899999976544
No 214
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=23.45 E-value=4.2e+02 Score=21.83 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=13.9
Q ss_pred cEEEEcCcHHHHHHHHHcCCeEE
Q 027992 12 GLVVATDDEKIAECCQQFGADVI 34 (215)
Q Consensus 12 ~ivV~td~~~i~~~~~~~g~~v~ 34 (215)
-+.|.++.+.....|+++|+.++
T Consensus 114 i~~visn~~~~~~~A~~~gIp~~ 136 (280)
T TIGR00655 114 IALVISNHEDLRSLVERFGIPFH 136 (280)
T ss_pred EEEEEEcChhHHHHHHHhCCCEE
Confidence 34555566666666777776653
No 215
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.19 E-value=4.5e+02 Score=22.04 Aligned_cols=60 Identities=8% Similarity=0.017 Sum_probs=39.9
Q ss_pred HHHHHHcCCeE-E-eCCCCCCCchHHHHHHHHHhc--CCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 23 AECCQQFGADV-I-MTSESCRNGTERCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 23 ~~~~~~~g~~v-~-~~~~~~~~~~~~i~~~l~~~~--~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
.+.|++.|+.. . .-+++ ...+.+...+..+. +..+++++..|--+-++...+-++|.-.+
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~--~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~K 118 (301)
T PRK14194 55 ILRAEEAGIRSLEHRLPAD--TSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLK 118 (301)
T ss_pred HHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchh
Confidence 36678889886 2 22322 23456777777774 45588999888767788877777666543
No 216
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=23.13 E-value=2.7e+02 Score=24.45 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=38.6
Q ss_pred CcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 18 DDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 18 d~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+..-++..++++|+++.... ...++...+..+++.+..++|+|++.=|++. =..+.+.++++.+
T Consensus 205 n~~~l~a~l~~~G~~~~~~~-~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S~-G~~D~~~~al~~l 268 (411)
T PRK10680 205 NRLAVHLMLEQLGCEVINLG-IIRDDPHALRAAFIEADSQADVVISSGGVSV-GEADYTKTILEEL 268 (411)
T ss_pred HHHHHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHhccCCCEEEEcCCCCC-CCcchHHHHHHhc
Confidence 34457788899999874322 2335666777777665456788777655543 2334445555443
No 217
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=22.60 E-value=1.1e+02 Score=25.26 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=12.6
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 027992 196 VDAPEDVEKIESFMRERN 213 (215)
Q Consensus 196 Idt~~Dl~~ae~il~~~~ 213 (215)
|.|.+|...|-..|..++
T Consensus 163 I~t~eda~~a~~~lhq~~ 180 (308)
T KOG2599|consen 163 IRTEEDAKRAVEKLHQKG 180 (308)
T ss_pred eccHHHHHHHHHHHHHhC
Confidence 777888877776665544
No 218
>PRK07671 cystathionine beta-lyase; Provisional
Probab=22.58 E-value=4.4e+02 Score=22.54 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=37.0
Q ss_pred HHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992 24 ECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 86 (215)
Q Consensus 24 ~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~ 86 (215)
..++.+|+++..-+. .+...+..+ +.++...|++-.+.+|.....+++++.+..++.
T Consensus 107 ~~~~~~G~~v~~v~~---~d~~~l~~a---i~~~tklV~le~P~NPtg~~~dl~~I~~la~~~ 163 (377)
T PRK07671 107 KVLNRFGIEHTFVDT---SNLEEVEEA---IRPNTKAIYVETPTNPLLKITDIKKISTIAKEK 163 (377)
T ss_pred HHHhcCCeEEEEECC---CCHHHHHHh---cCCCCeEEEEECCCCCCCcccCHHHHHHHHHHc
Confidence 455667887643221 233333333 334567888889999998888998888877653
No 219
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=22.25 E-value=58 Score=27.91 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 027992 192 EAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 192 ~~idIdt~~Dl~~ae~il~ 210 (215)
..++|||++||+.++.+..
T Consensus 180 ~~~nINTpeDl~~l~~~~~ 198 (366)
T PRK14489 180 AFFNVNTPEDLEQLRAIPD 198 (366)
T ss_pred ccccCCCHHHHHHHhhhhh
Confidence 4679999999999887753
No 220
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=22.25 E-value=2.9e+02 Score=24.32 Aligned_cols=65 Identities=6% Similarity=0.198 Sum_probs=41.9
Q ss_pred cCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 17 TDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 17 td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
++..-++..++++|+++.... ...++...+..++..+..++|+|++.=|++. =..+.+.++++.+
T Consensus 220 sN~~~L~a~l~~~G~~v~~~~-~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S~-G~~D~v~~~l~~~ 284 (419)
T PRK14690 220 ANRPMLLALARRWGHAPVDLG-RVGDDRAALAARLDRAAAEADVILTSGGASA-GDEDHVSALLREA 284 (419)
T ss_pred CHHHHHHHHHHHCCCEEEEEe-eeCCCHHHHHHHHHHhCccCCEEEEcCCccC-CCcchHHHHHHhc
Confidence 344567788999999874322 3345677788888765456787777655554 3455566666654
No 221
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=22.10 E-value=4.8e+02 Score=21.91 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=44.1
Q ss_pred cEEEEcC---cHHHHHHHHHcCCeEEeCCCCCCCc-hH-HHHHHHHHhcCCCCEEEEe-cCCCCCCCHHHHHH----HHH
Q 027992 12 GLVVATD---DEKIAECCQQFGADVIMTSESCRNG-TE-RCNEALQKLEKKYDIVVNI-QGDEPLIEPEIIDG----VVK 81 (215)
Q Consensus 12 ~ivV~td---~~~i~~~~~~~g~~v~~~~~~~~~~-~~-~i~~~l~~~~~~~d~v~~~-~~d~Pli~~~~i~~----~i~ 81 (215)
+++++.+ +.+-+++.+.||++++..+.. ++ +. ++..+-+-.....+..++. |-++|.=...+..- ..+
T Consensus 87 ~~iivmP~~~S~er~~~l~a~GAevi~t~~~--~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~ 164 (300)
T COG0031 87 RLIIVMPETMSQERRKLLRALGAEVILTPGA--PGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQ 164 (300)
T ss_pred cEEEEeCCCCCHHHHHHHHHcCCEEEEcCCC--CCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHH
Confidence 3455553 688889999999999887763 34 43 3333322222344545555 77777655555533 223
Q ss_pred HHHcCCCceEE
Q 027992 82 ALQAAPDAVFS 92 (215)
Q Consensus 82 ~~~~~~~~~i~ 92 (215)
.+....|..++
T Consensus 165 ~~~g~~d~fVa 175 (300)
T COG0031 165 QTDGKVDAFVA 175 (300)
T ss_pred HhCCCCCEEEE
Confidence 33323555554
No 222
>PLN03013 cysteine synthase
Probab=22.05 E-value=5e+02 Score=22.98 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=34.5
Q ss_pred CCCcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCH
Q 027992 9 LFCGLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP 73 (215)
Q Consensus 9 ~~d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~ 73 (215)
++.-++|+-+ +++-.+.++.+|++++..+.. .+...++..+.+......+.+++.|-+.|..-.
T Consensus 198 G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~-~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ 263 (429)
T PLN03013 198 GYRLILTMPASMSMERRVLLKAFGAELVLTDPA-KGMTGAVQKAEEILKNTPDAYMLQQFDNPANPK 263 (429)
T ss_pred CCCEEEEECCCCcHHHHHHHHHcCCEEEEECCC-CChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHH
Confidence 4444555443 455667888899998755433 122233333333222233567766767776543
No 223
>cd03767 SR_Res_par Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Probab=21.99 E-value=3.2e+02 Score=19.82 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=39.1
Q ss_pred HHHHHHHcCCeE--EeCCCCCCCchH----HHHHHHHHhcCCCCEEEEecCCCCCC-CHHHHHHHHHHHHcC
Q 027992 22 IAECCQQFGADV--IMTSESCRNGTE----RCNEALQKLEKKYDIVVNIQGDEPLI-EPEIIDGVVKALQAA 86 (215)
Q Consensus 22 i~~~~~~~g~~v--~~~~~~~~~~~~----~i~~~l~~~~~~~d~v~~~~~d~Pli-~~~~i~~~i~~~~~~ 86 (215)
+.++|...|.++ +.... .+|.. .+...+..+. ..|.+++..-|+-.+ ...++..+++.+.+.
T Consensus 21 l~~~a~~~g~~~~~i~~d~--~SG~~~~Rp~~~~ll~~~~-~gd~lvv~~ldRl~R~~~~~~~~~~~~l~~~ 89 (146)
T cd03767 21 LEAFATERGFYIAGFYVEN--ASGAKLDRPELFRLLDDAQ-SGDVLLVEQIDRLSRLPLDDWETLKASIAAK 89 (146)
T ss_pred HHHHHHHCCCEEEEEEEEC--CcCCCCCCHHHHHHHHHhh-CCCEEEEEeCccccCCCHHHHHHHHHHHHHC
Confidence 445666678764 22322 23332 2455555554 348999999999999 667777777777653
No 224
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.96 E-value=3.1e+02 Score=19.76 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=50.9
Q ss_pred CCcEEEEc---CcHHHHHHHHHcCCeEE--eCCCCCCC---chHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 10 FCGLVVAT---DDEKIAECCQQFGADVI--MTSESCRN---GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 10 ~d~ivV~t---d~~~i~~~~~~~g~~v~--~~~~~~~~---~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
|++-+-++ +-+++.+++. .|++.+ .||..-.. +...+..+.+++ ..+ +..+..+.|=+++++++.+..
T Consensus 6 I~d~lsVsgQi~~~D~~~iaa-~GFksiI~nRPDgEe~~QP~~~~i~~aa~~a--Gl~-y~~iPV~~~~iT~~dV~~f~~ 81 (130)
T COG3453 6 INDRLSVSGQISPADIASIAA-LGFKSIICNRPDGEEPGQPGFAAIAAAAEAA--GLT-YTHIPVTGGGITEADVEAFQR 81 (130)
T ss_pred cccceeecCCCCHHHHHHHHH-hccceecccCCCCCCCCCCChHHHHHHHHhc--CCc-eEEeecCCCCCCHHHHHHHHH
Confidence 34444444 3466666554 588753 35532222 344677777776 344 667788888999999999999
Q ss_pred HHHcCCCceEEe
Q 027992 82 ALQAAPDAVFST 93 (215)
Q Consensus 82 ~~~~~~~~~i~~ 93 (215)
++.+....+++-
T Consensus 82 Al~eaegPVlay 93 (130)
T COG3453 82 ALDEAEGPVLAY 93 (130)
T ss_pred HHHHhCCCEEee
Confidence 996544566663
No 225
>PRK01839 Maf-like protein; Reviewed
Probab=21.95 E-value=2e+02 Score=22.58 Aligned_cols=79 Identities=25% Similarity=0.256 Sum_probs=49.8
Q ss_pred cccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCC----------ch---H---HH----HHH-HHHh-----cC--
Q 027992 5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRN----------GT---E---RC----NEA-LQKL-----EK-- 56 (215)
Q Consensus 5 ~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~----------~~---~---~i----~~~-l~~~-----~~-- 56 (215)
..++.+..+|+++.++.-++++++.|+.+...+++... +. . ++ +.+ ...+ +.
T Consensus 4 ~~~~~~~~lILAS~SprR~elL~~~gi~f~v~~~~idE~~~~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~l~~~~~~~~l 83 (209)
T PRK01839 4 MAAPLFPFLYLASQSPRRQELLQQLGVRFELLLPRPDEDAEALEAELPGEAPDDYVQRVCVAKAEAARARLVARGLPAAP 83 (209)
T ss_pred cccccCCCEEEeCCCHHHHHHHHHCCCCeEEeCCCCCcCccccccCCCCCCHHHHHHHHHHHHHHHHHHhhccccCCCCE
Confidence 34566788999999999999999999876322322222 11 1 11 111 1221 11
Q ss_pred --CCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 57 --KYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 57 --~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
.+|.|+.+++ .-|=.|.+.+++.+.++
T Consensus 84 vI~aDTvV~~~g-~IlgKP~~~eeA~~~L~ 112 (209)
T PRK01839 84 VLVADTTVTIDG-AILGKPADAADALAMLT 112 (209)
T ss_pred EEEeCeEEEECC-EEecCCCCHHHHHHHHH
Confidence 2477777777 57888999988888875
No 226
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=21.46 E-value=2.5e+02 Score=24.12 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=37.5
Q ss_pred cccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCC-----CchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992 5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCR-----NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 79 (215)
Q Consensus 5 ~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~-----~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~ 79 (215)
+++..+|.|++........++++++++.++.+..++. ++.+ .+...+ ....+..+.-+.-+-+.+.|+++
T Consensus 253 ~a~~~Vd~Vvi~~~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~d-~y~~~k----~~G~~~~i~~~~~~sTt~ii~RI 327 (353)
T PTZ00308 253 LSCRYVDEVVIGAPFDVTKEVIDSLHINVVVGGKFSDLVNEEGGSD-PYEVPK----AMGIFKEVDSGCDLTTDSIVDRV 327 (353)
T ss_pred HhhCCCCeEEEcCCCCChHHHHHHhCCCEEEECCCCccccCCCccc-chHHHh----cCceEEEeCCCCCccHHHHHHHH
Confidence 3556778877766555555677777777754433321 1111 111111 23455555555555555555555
Q ss_pred HHH
Q 027992 80 VKA 82 (215)
Q Consensus 80 i~~ 82 (215)
++.
T Consensus 328 ~~~ 330 (353)
T PTZ00308 328 VKN 330 (353)
T ss_pred HHh
Confidence 443
No 227
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=21.44 E-value=3.9e+02 Score=20.59 Aligned_cols=64 Identities=22% Similarity=0.370 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 20 EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
++++.+++..|+.++.-... .+.......+++.+. .++|.|++=.+=+...+++.+.++-+.+.
T Consensus 46 eQL~~~a~~l~vp~~~~~~~-~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~ 110 (196)
T PF00448_consen 46 EQLKTYAEILGVPFYVARTE-SDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLE 110 (196)
T ss_dssp HHHHHHHHHHTEEEEESSTT-SCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccchhhcc-hhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhh
Confidence 77888899999887542211 122334566777653 46899999777777777777777766554
No 228
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=21.39 E-value=3.3e+02 Score=19.83 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=12.3
Q ss_pred CCCEEEEecCCCCCCCHHHH
Q 027992 57 KYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 57 ~~d~v~~~~~d~Pli~~~~i 76 (215)
.+|+|+...+..|+++++.|
T Consensus 71 ~ADIVvsAtg~~~~i~~~~i 90 (140)
T cd05212 71 DADVVVVGSPKPEKVPTEWI 90 (140)
T ss_pred hCCEEEEecCCCCccCHHHc
Confidence 44666666666666666554
No 229
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=21.25 E-value=5.2e+02 Score=21.99 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=43.4
Q ss_pred CcEEEEcC-cHHHHHHHHHcCCeEEeCCCCCCC---chHHHHHHHHHhcCCCCEEEEecCCCCC---CCHHHHHHHHHHH
Q 027992 11 CGLVVATD-DEKIAECCQQFGADVIMTSESCRN---GTERCNEALQKLEKKYDIVVNIQGDEPL---IEPEIIDGVVKAL 83 (215)
Q Consensus 11 d~ivV~td-~~~i~~~~~~~g~~v~~~~~~~~~---~~~~i~~~l~~~~~~~d~v~~~~~d~Pl---i~~~~i~~~i~~~ 83 (215)
|.|++.+. .......++.+|++++.-+.+..+ +.+.+..++.........+++..+.+|. .+.+.+.++++..
T Consensus 116 d~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~ 195 (391)
T PRK07309 116 DKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVL 195 (391)
T ss_pred CEEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHH
Confidence 45555553 233456667778876432211111 2234444443322235677776688885 6788999999888
Q ss_pred HcC
Q 027992 84 QAA 86 (215)
Q Consensus 84 ~~~ 86 (215)
+++
T Consensus 196 ~~~ 198 (391)
T PRK07309 196 KKY 198 (391)
T ss_pred HHc
Confidence 663
No 230
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=20.97 E-value=6.3e+02 Score=23.23 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=49.5
Q ss_pred CcHHHHHHHHHcCCeE--EeCC-CCCCCchH-HHHH-HHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEE
Q 027992 18 DDEKIAECCQQFGADV--IMTS-ESCRNGTE-RCNE-ALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 92 (215)
Q Consensus 18 d~~~i~~~~~~~g~~v--~~~~-~~~~~~~~-~i~~-~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~ 92 (215)
-.++|+..+..+|+.. ...+ ..|+||.- ++.. ++.+. .-.+++++-=.=.++.+.|+.+..+++.-.++++-
T Consensus 458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~---~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~ 534 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWN---NPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVL 534 (582)
T ss_pred CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcC---CCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEE
Confidence 3578888899899763 2333 45777764 4533 33333 23677777777789999999999999764455555
Q ss_pred e
Q 027992 93 T 93 (215)
Q Consensus 93 ~ 93 (215)
+
T Consensus 535 V 535 (582)
T KOG0062|consen 535 V 535 (582)
T ss_pred E
Confidence 3
No 231
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.86 E-value=3.7e+02 Score=22.91 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=37.6
Q ss_pred CCCchHHHHHHHHHh-cCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEEee
Q 027992 40 CRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA 94 (215)
Q Consensus 40 ~~~~~~~i~~~l~~~-~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~~~ 94 (215)
+..++.++.+||++. ..++|+|++- =+++.++|..++.+.+. ...+++++
T Consensus 180 vG~dT~sF~~aLraALReDPDVIlvG----EmRD~ETi~~ALtAAET-GHLV~~TL 230 (353)
T COG2805 180 VGRDTLSFANALRAALREDPDVILVG----EMRDLETIRLALTAAET-GHLVFGTL 230 (353)
T ss_pred hcccHHHHHHHHHHHhhcCCCEEEEe----ccccHHHHHHHHHHHhc-CCEEEEec
Confidence 334566778888764 5789988875 37999999999998765 47777764
No 232
>PLN02366 spermidine synthase
Probab=20.73 E-value=2.2e+02 Score=23.86 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=23.2
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 57 KYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 57 ~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
..+++++.++.+|+..++.+..+++.+++
T Consensus 197 ~pgGvlv~q~~s~~~~~~~~~~i~~tl~~ 225 (308)
T PLN02366 197 RPGGVVCTQAESMWLHMDLIEDLIAICRE 225 (308)
T ss_pred CCCcEEEECcCCcccchHHHHHHHHHHHH
Confidence 45788888888888888888888888764
No 233
>PRK06207 aspartate aminotransferase; Provisional
Probab=20.58 E-value=5.5e+02 Score=22.04 Aligned_cols=73 Identities=8% Similarity=0.069 Sum_probs=44.7
Q ss_pred CcEEEEcC-cHHHHHHHHHcCCeEEeCCCC-------CCCchHHHHHHHHHhcCCCCEEEEecCCCCC---CCHHHHHHH
Q 027992 11 CGLVVATD-DEKIAECCQQFGADVIMTSES-------CRNGTERCNEALQKLEKKYDIVVNIQGDEPL---IEPEIIDGV 79 (215)
Q Consensus 11 d~ivV~td-~~~i~~~~~~~g~~v~~~~~~-------~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pl---i~~~~i~~~ 79 (215)
|.|+|.+. ......+++..|++++.-+.. +.-+.+.+..++. .....+++..+.+|. ++.+.+.++
T Consensus 127 d~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~P~NPTG~~~s~e~l~~l 203 (405)
T PRK06207 127 DKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK---AGVRVFLFSNPNNPAGVVYSAEEIAQI 203 (405)
T ss_pred CEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh---hcCeEEEECCCCCCCCcCCCHHHHHHH
Confidence 45555553 344556777778776322111 1112233433332 345788899999999 999999999
Q ss_pred HHHHHcC
Q 027992 80 VKALQAA 86 (215)
Q Consensus 80 i~~~~~~ 86 (215)
++..+++
T Consensus 204 ~~~a~~~ 210 (405)
T PRK06207 204 AALARRY 210 (405)
T ss_pred HHHHHHc
Confidence 9988753
No 234
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.54 E-value=5e+02 Score=21.57 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=39.4
Q ss_pred HHHHHHcCCeE-E-eCCCCCCCchHHHHHHHHHhc--CCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 23 AECCQQFGADV-I-MTSESCRNGTERCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 23 ~~~~~~~g~~v-~-~~~~~~~~~~~~i~~~l~~~~--~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
.+.|++.|+.+ . .-+++ .....+...+..+. ++.+++++..|--+-++...+-++|.-.
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~--~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~ 116 (286)
T PRK14175 54 KKAAEKIGMISEIVHLEET--ATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE 116 (286)
T ss_pred HHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc
Confidence 36788889886 3 23322 23445667777774 4567999988887788888777766554
No 235
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=20.45 E-value=5e+02 Score=21.74 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=42.1
Q ss_pred CcEEEEc---CcHHHHHHHHHcCCeEEeCCCCCCCchH----------HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH
Q 027992 11 CGLVVAT---DDEKIAECCQQFGADVIMTSESCRNGTE----------RCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 77 (215)
Q Consensus 11 d~ivV~t---d~~~i~~~~~~~g~~v~~~~~~~~~~~~----------~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~ 77 (215)
..|++-- ..+.+.+.+++.|+.++....++..|.. .++.-++. -.+-++++|+|++.. +.
T Consensus 31 ~~iytlG~iIHN~~vv~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~-----~g~~viDaTCP~V~k--~~ 103 (298)
T PRK01045 31 APIYVRHEIVHNRYVVERLEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEAKE-----RGLTVIDATCPLVTK--VH 103 (298)
T ss_pred CCeEEEecCccCHHHHHHHHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHHHH-----CCCeEEeCCCccchH--HH
Confidence 3465555 4566667778889988765555542211 23333333 246667999999988 66
Q ss_pred HHHHHHHc
Q 027992 78 GVVKALQA 85 (215)
Q Consensus 78 ~~i~~~~~ 85 (215)
+.++.+.+
T Consensus 104 ~~v~~~~~ 111 (298)
T PRK01045 104 KEVARMSR 111 (298)
T ss_pred HHHHHHHh
Confidence 77777643
No 236
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=20.33 E-value=1.7e+02 Score=22.03 Aligned_cols=62 Identities=23% Similarity=0.293 Sum_probs=36.8
Q ss_pred cEEEEcC------------cHHHHHHHHHcCCeEEeCCCCCCCchH-------------HHHHHHHHhcCCCCE---EEE
Q 027992 12 GLVVATD------------DEKIAECCQQFGADVIMTSESCRNGTE-------------RCNEALQKLEKKYDI---VVN 63 (215)
Q Consensus 12 ~ivV~td------------~~~i~~~~~~~g~~v~~~~~~~~~~~~-------------~i~~~l~~~~~~~d~---v~~ 63 (215)
+|||+|. +++.++.+++.|+.++.....+++..- .+++.|+-+...... +-+
T Consensus 53 kvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sHalSg~eRsis~kfGG~~p~eiiAetLR~fg~G~KVcvEIti 132 (186)
T COG1751 53 KVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSHALSGVERSISRKFGGYSPLEIIAETLRMFGQGVKVCVEITI 132 (186)
T ss_pred eEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehhhhhcchhhhhhhcCCcchHHHHHHHHHHhcCCcEEEEEEEE
Confidence 4777773 477888888899988766655554321 135555544333322 345
Q ss_pred ecCCCCCCCH
Q 027992 64 IQGDEPLIEP 73 (215)
Q Consensus 64 ~~~d~Pli~~ 73 (215)
+-+|.-++..
T Consensus 133 MAaDaGlIp~ 142 (186)
T COG1751 133 MAADAGLIPV 142 (186)
T ss_pred EeccCCCccc
Confidence 5666666654
No 237
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=20.31 E-value=3.5e+02 Score=22.26 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCeEEeCCCCCCCchHHH-HHHH--HHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 21 KIAECCQQFGADVIMTSESCRNGTERC-NEAL--QKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 21 ~i~~~~~~~g~~v~~~~~~~~~~~~~i-~~~l--~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
.+....++.+ +++. .++||.++. ...+ ..+ . |.++-+..++|.+.+..+..+....++
T Consensus 9 ~l~~~ik~~~-kv~v---AfSGGvDSslLa~la~~~l--G-~~v~AvTv~sP~~p~~e~e~A~~~A~~ 69 (269)
T COG1606 9 RLKKAIKEKK-KVVV---AFSGGVDSSLLAKLAKEAL--G-DNVVAVTVDSPYIPRREIEEAKNIAKE 69 (269)
T ss_pred HHHHHHhhcC-eEEE---EecCCccHHHHHHHHHHHh--c-cceEEEEEecCCCChhhhhHHHHHHHH
Confidence 3445555543 4433 455777653 2222 333 2 778888999999999999988777654
No 238
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=20.22 E-value=2.9e+02 Score=19.05 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=30.6
Q ss_pred CCcEEEEcCcHHHHHHHHHcC--CeEE-eCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 10 FCGLVVATDDEKIAECCQQFG--ADVI-MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 10 ~d~ivV~td~~~i~~~~~~~g--~~v~-~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
...|+|.|.+-..+..+.++- +.++ ..+.+ + ..+++.--....-++....+.=..+.+..+++.+.
T Consensus 17 ak~Ivv~T~sG~ta~~isk~RP~~pIiavt~~~------~---~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~ 85 (117)
T PF02887_consen 17 AKAIVVFTESGRTARLISKYRPKVPIIAVTPNE------S---VARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAK 85 (117)
T ss_dssp ESEEEEE-SSSHHHHHHHHT-TSSEEEEEESSH------H---HHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHhhCCCCeEEEEcCcH------H---HHhhhhcccceEEEEeccccccHHHHHHHHHHHHH
Confidence 456777887766666655552 3332 22211 1 22222112334444444333335666666666653
No 239
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=20.03 E-value=6.6e+02 Score=22.75 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=37.9
Q ss_pred cEEEEcC---c---HHHHHHHHHcC-CeEEeCCCCCCCchH-HHHHHHHHh------c-CCCCEEEEecCCCCCCCHHHH
Q 027992 12 GLVVATD---D---EKIAECCQQFG-ADVIMTSESCRNGTE-RCNEALQKL------E-KKYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 12 ~ivV~td---~---~~i~~~~~~~g-~~v~~~~~~~~~~~~-~i~~~l~~~------~-~~~d~v~~~~~d~Pli~~~~i 76 (215)
+|+|+.+ + +.++++++++. +.++..+..-..+.+ .+..+++.+ . ..+|+++++++|.= ++|..+
T Consensus 98 eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~L 176 (504)
T PRK14716 98 RIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLEL 176 (504)
T ss_pred EEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHH
Confidence 6777762 2 23344555553 443332222112333 444555432 1 24699999999764 778888
Q ss_pred HHHHHH
Q 027992 77 DGVVKA 82 (215)
Q Consensus 77 ~~~i~~ 82 (215)
..+...
T Consensus 177 r~~~~~ 182 (504)
T PRK14716 177 RLYNYL 182 (504)
T ss_pred HHHHhh
Confidence 765443
No 240
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=20.03 E-value=1.6e+02 Score=25.41 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=33.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHH-----HHHHHHhcCCCCEEEEec
Q 027992 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC-----NEALQKLEKKYDIVVNIQ 65 (215)
Q Consensus 9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i-----~~~l~~~~~~~d~v~~~~ 65 (215)
.-|-|+.+|.-..|.++++-||+.-.+|. .+-+|..++ ...++.+++++|+++.|.
T Consensus 108 hpDvvLlctsilsiekilatypfqrlrrg-tlfvdvlSvKefek~lfekYLPkdfDIlctHp 168 (480)
T KOG2380|consen 108 HPDVVLLCTSILSIEKILATYPFQRLRRG-TLFVDVLSVKEFEKELFEKYLPKDFDILCTHP 168 (480)
T ss_pred CCCEEEEEehhhhHHHHHHhcCchhhccc-eeEeeeeecchhHHHHHHHhCccccceEeecC
Confidence 34567777777778788887776633333 222343332 233345567888887764
Done!