Query 027992
Match_columns 215
No_of_seqs 210 out of 1320
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 06:53:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcu_A 3-deoxy-manno-octuloson 100.0 5.7E-31 1.9E-35 212.4 18.5 208 4-212 37-251 (253)
2 3tqd_A 3-deoxy-manno-octuloson 100.0 8.4E-30 2.9E-34 205.8 18.4 201 9-209 48-256 (256)
3 3k8d_A 3-deoxy-manno-octuloson 100.0 2.2E-29 7.5E-34 204.2 15.8 204 5-210 54-264 (264)
4 3oam_A 3-deoxy-manno-octuloson 99.9 3E-27 1E-31 190.6 15.4 203 9-212 41-250 (252)
5 1vic_A 3-deoxy-manno-octuloson 99.9 1.6E-21 5.3E-26 157.8 16.6 204 9-214 41-256 (262)
6 1h7e_A 3-deoxy-manno-octuloson 99.9 1.9E-20 6.5E-25 149.6 19.7 199 5-212 38-240 (245)
7 2y6p_A 3-deoxy-manno-octuloson 99.8 1.9E-18 6.4E-23 137.0 17.6 191 10-210 41-232 (234)
8 3q80_A 2-C-methyl-D-erythritol 99.8 2.6E-18 8.8E-23 136.5 13.8 178 5-210 46-230 (231)
9 1qwj_A Cytidine monophospho-N- 99.7 4.5E-17 1.5E-21 129.0 15.2 179 4-213 38-224 (229)
10 1ezi_A CMP-N-acetylneuraminic 99.7 5.5E-17 1.9E-21 128.2 13.8 177 5-211 40-225 (228)
11 3f1c_A Putative 2-C-methyl-D-e 99.6 9.6E-15 3.3E-19 116.8 16.6 179 5-212 43-235 (246)
12 2yc3_A 2-C-methyl-D-erythritol 99.5 6E-13 2.1E-17 104.8 12.2 178 6-212 44-227 (228)
13 1vpa_A 2-C-methyl-D-erythritol 99.4 1E-11 3.5E-16 98.1 16.6 173 5-213 52-231 (234)
14 2xwl_A 2-C-methyl-D-erythritol 99.4 2.5E-11 8.6E-16 95.0 18.0 175 6-212 42-221 (223)
15 4fce_A Bifunctional protein GL 99.4 4.6E-12 1.6E-16 109.5 14.8 186 9-212 50-245 (459)
16 1vgw_A 4-diphosphocytidyl-2C-m 99.4 1.6E-11 5.3E-16 96.8 15.6 173 6-210 46-229 (231)
17 2vsh_A TARI, 2-C-methyl-D-eryt 99.3 6.5E-11 2.2E-15 93.3 15.6 176 6-211 43-235 (236)
18 1hm9_A GLMU, UDP-N-acetylgluco 99.3 1.5E-10 5.2E-15 100.3 18.9 187 9-211 53-250 (468)
19 2waw_A MOBA relate protein; un 99.3 2.3E-10 7.8E-15 87.8 15.9 74 9-82 45-120 (199)
20 1i52_A 4-diphosphocytidyl-2-C- 99.3 4.4E-11 1.5E-15 94.6 11.7 177 6-212 47-230 (236)
21 2px7_A 2-C-methyl-D-erythritol 99.2 3.2E-10 1.1E-14 89.9 15.1 172 7-213 62-235 (236)
22 2v0h_A Bifunctional protein GL 99.2 4.8E-10 1.6E-14 96.8 16.7 185 9-211 47-241 (456)
23 3rsb_A Adenosylcobinamide-phos 99.2 1.4E-11 5E-16 94.6 5.7 74 5-85 38-119 (196)
24 4ecm_A Glucose-1-phosphate thy 99.2 3.6E-10 1.2E-14 91.3 12.9 180 8-212 68-260 (269)
25 2wee_A MOBA-related protein; u 99.1 1.9E-09 6.5E-14 82.5 12.7 74 9-82 45-120 (197)
26 1fxo_A Glucose-1-phosphate thy 99.0 7.7E-09 2.6E-13 84.6 14.8 182 9-211 47-241 (293)
27 1w55_A ISPD/ISPF bifunctional 99.0 2.9E-10 9.9E-15 95.9 6.3 161 6-210 43-205 (371)
28 1lvw_A Glucose-1-phosphate thy 99.0 1.4E-08 4.8E-13 83.1 16.1 182 9-211 48-242 (295)
29 3juk_A UDP-glucose pyrophospho 99.0 3.2E-09 1.1E-13 86.1 11.3 185 9-212 47-271 (281)
30 2pa4_A UTP-glucose-1-phosphate 99.0 2.6E-09 9E-14 88.5 10.9 186 8-210 56-281 (323)
31 3ngw_A Molybdopterin-guanine d 98.9 2.7E-08 9.1E-13 77.4 12.6 77 12-92 40-118 (208)
32 2ggo_A 401AA long hypothetical 98.9 1.3E-08 4.3E-13 86.5 10.7 178 9-212 45-225 (401)
33 1mc3_A Glucose-1-phosphate thy 98.9 4.6E-08 1.6E-12 80.1 13.3 183 8-211 47-242 (296)
34 3d5n_A Q97W15_sulso; NESG, SSR 98.8 9.8E-09 3.3E-13 79.0 8.1 69 12-83 42-112 (197)
35 2e3d_A UTP--glucose-1-phosphat 98.8 1E-07 3.5E-12 77.9 13.8 177 9-207 53-277 (302)
36 2qh5_A PMI, ALGA, mannose-6-ph 98.7 1.7E-08 5.9E-13 83.0 6.5 188 10-209 51-282 (308)
37 2ux8_A Glucose-1-phosphate uri 98.7 3.7E-08 1.3E-12 80.4 7.9 182 9-210 59-278 (297)
38 1jyk_A LICC protein, CTP:phosp 98.6 8.6E-08 2.9E-12 76.6 7.4 172 9-212 70-253 (254)
39 3brk_X Glucose-1-phosphate ade 98.4 3.1E-06 1.1E-10 72.3 13.4 190 9-211 58-285 (420)
40 1tzf_A Glucose-1-phosphate cyt 98.4 4.3E-06 1.5E-10 66.4 12.2 176 9-212 47-251 (259)
41 3st8_A Bifunctional protein GL 98.4 1.4E-05 4.9E-10 69.7 16.0 193 6-212 51-260 (501)
42 3pnn_A Conserved domain protei 98.4 1.5E-05 5.2E-10 65.2 15.1 198 8-212 46-292 (303)
43 2i5e_A Hypothetical protein MM 98.3 1E-06 3.4E-11 68.4 7.0 63 9-81 47-111 (211)
44 2dpw_A Hypothetical protein TT 98.3 3.8E-06 1.3E-10 66.0 9.5 62 12-84 48-109 (232)
45 2x65_A Mannose-1-phosphate gua 98.1 1.7E-05 5.8E-10 65.9 9.8 186 7-205 47-270 (336)
46 1e5k_A Molybdopterin-guanine d 98.0 2.5E-05 8.4E-10 60.0 8.5 70 9-82 46-116 (201)
47 2cu2_A Putative mannose-1-phos 98.0 1.7E-05 5.8E-10 65.9 7.9 189 6-206 47-266 (337)
48 2xme_A CTP-inositol-1-phosphat 98.0 6.4E-06 2.2E-10 64.5 4.6 169 10-209 59-232 (232)
49 1yp2_A Glucose-1-phosphate ade 98.0 0.00013 4.3E-09 62.7 13.2 198 8-211 65-296 (451)
50 4evw_A Nucleoside-diphosphate- 97.8 0.00022 7.5E-09 56.8 10.6 175 8-208 44-244 (255)
51 2e8b_A Probable molybdopterin- 97.7 0.00016 5.4E-09 55.3 8.1 65 10-80 54-120 (201)
52 3cgx_A Putative nucleotide-dip 97.3 0.00049 1.7E-08 54.4 6.4 79 9-92 51-136 (242)
53 4hg6_A Cellulose synthase subu 92.1 0.4 1.4E-05 44.1 7.8 64 22-89 205-269 (802)
54 3ckj_A Putative uncharacterize 90.5 1.3 4.5E-05 35.8 8.6 74 11-88 79-162 (329)
55 2bo4_A Mannosylglycerate synth 90.3 1.7 5.8E-05 36.5 9.3 79 12-92 30-127 (397)
56 1qg8_A Protein (spore coat pol 90.2 1.6 5.6E-05 33.3 8.6 73 12-89 32-119 (255)
57 3f1y_A Mannosyl-3-phosphoglyce 87.6 2.2 7.4E-05 35.7 8.1 78 9-88 125-210 (387)
58 3bcv_A Putative glycosyltransf 85.7 6.8 0.00023 29.3 9.5 72 12-89 36-116 (240)
59 1xhb_A Polypeptide N-acetylgal 79.6 4.2 0.00014 34.4 6.7 75 12-91 63-147 (472)
60 2z86_A Chondroitin synthase; G 74.1 9.6 0.00033 33.5 7.6 75 11-89 124-205 (625)
61 2d7i_A Polypeptide N-acetylgal 72.9 8.9 0.0003 33.6 7.0 76 12-92 146-230 (570)
62 2ffu_A Ppgalnact-2, polypeptid 72.0 7.6 0.00026 33.2 6.3 75 12-91 100-179 (501)
63 4fix_A UDP-galactofuranosyl tr 61.5 14 0.00049 33.0 6.0 76 9-88 211-298 (657)
64 2z86_A Chondroitin synthase; G 59.1 31 0.0011 30.1 7.8 45 42-89 440-485 (625)
65 2e8b_A Probable molybdopterin- 50.9 3.7 0.00013 30.5 0.3 29 183-211 168-200 (201)
66 3kbq_A Protein TA0487; structu 48.7 15 0.0005 27.0 3.3 52 19-71 25-76 (172)
67 2i5k_A UTP--glucose-1-phosphat 48.7 1.3E+02 0.0044 25.8 10.0 44 51-97 218-262 (488)
68 3nbk_A Phosphopantetheine aden 47.2 51 0.0017 24.2 6.1 72 8-81 79-155 (177)
69 1y5e_A Molybdenum cofactor bio 45.9 25 0.00084 25.4 4.2 50 20-70 34-85 (169)
70 2pjk_A 178AA long hypothetical 43.1 33 0.0011 25.0 4.5 49 21-70 44-94 (178)
71 3iwt_A 178AA long hypothetical 43.0 38 0.0013 24.4 4.9 51 20-71 43-95 (178)
72 3pzy_A MOG; ssgcid, seattle st 41.2 21 0.00072 25.7 3.2 50 20-71 30-80 (164)
73 1mkz_A Molybdenum cofactor bio 38.7 35 0.0012 24.7 4.0 50 20-70 31-82 (172)
74 2is8_A Molybdopterin biosynthe 37.2 25 0.00087 25.2 3.0 60 20-81 24-85 (164)
75 3n0v_A Formyltetrahydrofolate 35.7 1.5E+02 0.0052 23.3 7.6 61 13-76 121-184 (286)
76 3rfq_A Pterin-4-alpha-carbinol 35.1 43 0.0015 24.7 4.0 49 21-70 53-102 (185)
77 3glv_A Lipopolysaccharide core 34.2 52 0.0018 22.8 4.2 6 25-30 59-64 (143)
78 3lou_A Formyltetrahydrofolate 33.3 1.8E+02 0.0061 23.0 8.1 62 13-77 126-190 (292)
79 2l82_A Designed protein OR32; 31.7 67 0.0023 21.6 4.1 43 8-54 76-125 (162)
80 2l69_A Rossmann 2X3 fold prote 31.1 32 0.0011 22.5 2.4 59 17-84 10-72 (134)
81 4f3r_A Phosphopantetheine aden 31.0 1E+02 0.0035 22.0 5.4 69 11-81 65-139 (162)
82 3o1l_A Formyltetrahydrofolate 30.4 1.7E+02 0.0059 23.2 7.2 8 196-203 261-268 (302)
83 2zu9_A Mannosyl-3-phosphoglyce 29.7 1.6E+02 0.0053 24.6 7.0 40 43-84 144-185 (394)
84 3nv7_A Phosphopantetheine aden 29.6 85 0.0029 22.3 4.8 72 8-81 60-137 (157)
85 3p9x_A Phosphoribosylglycinami 28.6 1.9E+02 0.0064 21.7 7.7 63 13-78 33-101 (211)
86 2g2c_A Putative molybdenum cof 28.2 37 0.0013 24.4 2.6 50 20-70 28-82 (167)
87 3l7i_A Teichoic acid biosynthe 27.8 13 0.00043 33.6 0.0 56 31-92 60-116 (729)
88 4a2c_A Galactitol-1-phosphate 26.7 1.7E+02 0.0059 23.0 6.7 70 8-85 183-252 (346)
89 2pbq_A Molybdenum cofactor bio 26.7 56 0.0019 23.7 3.4 50 20-71 28-82 (178)
90 2bln_A Protein YFBG; transfera 26.6 1E+02 0.0034 24.6 5.2 63 9-77 23-94 (305)
91 7aat_A Aspartate aminotransfer 26.3 2.4E+02 0.0084 22.3 8.2 76 11-86 124-207 (401)
92 3k9w_A Phosphopantetheine aden 26.1 1.8E+02 0.0062 21.2 6.2 74 8-81 80-157 (187)
93 3pkz_A Recombinase SIN; small 25.7 58 0.002 21.9 3.2 70 15-86 8-84 (124)
94 1jlj_A Gephyrin; globular alph 24.4 72 0.0024 23.5 3.7 50 20-70 37-91 (189)
95 2gm5_A Transposon gamma-delta 23.2 80 0.0028 21.7 3.6 69 15-86 8-85 (139)
96 3guv_A Site-specific recombina 22.9 2E+02 0.0068 20.1 6.1 65 22-86 31-104 (167)
97 3uj3_X DNA-invertase; helix-tu 22.8 65 0.0022 23.4 3.2 69 15-86 8-83 (193)
No 1
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=99.97 E-value=5.7e-31 Score=212.38 Aligned_cols=208 Identities=34% Similarity=0.535 Sum_probs=169.4
Q ss_pred ccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 4 MCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 4 a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
++++ .+++|+|+|++++|.++++++|++++....+..+|++++.+|+..+.. +.|.+++++||+||+++++|+++++.
T Consensus 37 ~~~~-~~~~vvVvt~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~ 115 (253)
T 4fcu_A 37 KKVE-GFDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKL 115 (253)
T ss_dssp HTCT-TCCEEEEEESCHHHHHHHHTTTCCEEECCTTCCCHHHHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHH
T ss_pred HHhc-CCCEEEEECCHHHHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHH
Confidence 3444 499999999999999999999999876555566788899999988752 56999999999999999999999999
Q ss_pred HHcCCCceEEeecccCCC-CccCCCCceEEEEcCCCceecccCCCCCCCCCCCC-CCCC---CeeEEeeeeeechHHHhh
Q 027992 83 LQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKV-NPQF---PYLLHLGIQSYDSNFLKI 157 (215)
Q Consensus 83 ~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~-~q~~---p~~~~~~~~~~~~~~l~~ 157 (215)
+.++++..+++++++.+. ++..+|+.+|++.+++|.+++|+++++|+.|+... .|++ ++..|.+.|+|+.++|..
T Consensus 116 ~~~~~~~~~at~~~~~~~~~~~~~p~~~kvv~d~~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ 195 (253)
T 4fcu_A 116 LVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQE 195 (253)
T ss_dssp HHHCTTCSEEEEEEECCCHHHHHCTTSCEEEECTTSBEEEEESSCCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHH
T ss_pred HHhCCCCCEEEEeEEcCCHHHccCCCccEEEECCCCeEEEecCCCCCCCCCcccccccccccceeEEEEEEEeCHHHHHH
Confidence 976544444444455432 23468888999889999999999999988775311 1222 357799999999999999
Q ss_pred CcCCCCCCCCCccchhhhhhhhcCCeeEEEEecCC-CCCCCCHHHHHHHHHHHHhh
Q 027992 158 YPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 158 ~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~-~idIdt~~Dl~~ae~il~~~ 212 (215)
+..++++.++..|.++++++++.|++|.+++.+.. +++||||+||+.|+++|++|
T Consensus 196 ~~~~~~~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 196 YVTWEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp HTTSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred HHhCCCCcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 88888888888888999999999999999998755 99999999999999998765
No 2
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=99.97 E-value=8.4e-30 Score=205.81 Aligned_cols=201 Identities=32% Similarity=0.545 Sum_probs=165.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 027992 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 87 (215)
Q Consensus 9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~ 87 (215)
.+++|+|+|++++|.+.++++|++++....+..+|+++++.++..+. .+.|.+++++||+||+++++|+++++.+.+++
T Consensus 48 ~i~~VvVvt~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~ 127 (256)
T 3tqd_A 48 GAEEVVIATDDKRIRQVAEDFGAVVCMTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHD 127 (256)
T ss_dssp TCSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCHHHHHHHHHHcCCeEEEeCCCCCCcHHHHHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCC
Confidence 48999999999999999999999987666667789999999988874 25699999999999999999999999997644
Q ss_pred CceEEeecccCC-CCccCCCCceEEEEcCCCceecccCCCCCCCCCCCC-----CCCCCeeEEeeeeeechHHHhhCcCC
Q 027992 88 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKV-----NPQFPYLLHLGIQSYDSNFLKIYPGL 161 (215)
Q Consensus 88 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~-----~q~~p~~~~~~~~~~~~~~l~~~~~~ 161 (215)
++.+++.+.+++ .++..+|+.+|++.+++|.+++|+++++|+.|+... ....+++.|.|.|+|+.++|..+..+
T Consensus 128 ~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l 207 (256)
T 3tqd_A 128 NVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSW 207 (256)
T ss_dssp --CEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHS
T ss_pred CCCEEEEeeEcCCHHHhhCCCccEEEECCCCEEeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhC
Confidence 555555566664 233468888998888999999999999887664210 01234678999999999999999888
Q ss_pred CCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHH
Q 027992 162 HPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFM 209 (215)
Q Consensus 162 ~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il 209 (215)
.++.+|..|.++++|+++.|++|++++.+ ...++||||+||+.|+++|
T Consensus 208 ~~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~~ 256 (256)
T 3tqd_A 208 DACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAYF 256 (256)
T ss_dssp CCCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTTC
T ss_pred CCCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHhC
Confidence 88888888999999999999999999986 4689999999999998753
No 3
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=99.96 E-value=2.2e-29 Score=204.20 Aligned_cols=204 Identities=38% Similarity=0.613 Sum_probs=164.8
Q ss_pred cccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 5 ~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
.+++ +++|+|+|+++++.++++++|++++....+..+|++++..++..+. .+.|.+++++||+||+++++|+++++.+
T Consensus 54 ~~~~-i~~IvV~t~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~ 132 (264)
T 3k8d_A 54 RESG-AERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNL 132 (264)
T ss_dssp HHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHH
T ss_pred HhCC-CCEEEEECCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHH
Confidence 3444 8999999999999999999999987665566789999888888774 3579999999999999999999999999
Q ss_pred HcCCCceEEeecccCCC-CccCCCCceEEEEcCCCceecccCCCCCCCCCCC---CCCC-CCeeEEeeeeeechHHHhhC
Q 027992 84 QAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGK---VNPQ-FPYLLHLGIQSYDSNFLKIY 158 (215)
Q Consensus 84 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~---~~q~-~p~~~~~~~~~~~~~~l~~~ 158 (215)
.+ .++.+++.+.+++. ..+.+|+.+|++.+++|.+.+|++.++|+.|+.. ..|. .++..+.+.|+|+...+..+
T Consensus 133 ~~-~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~ 211 (264)
T 3k8d_A 133 AQ-RQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRY 211 (264)
T ss_dssp HT-SSCSEEEEEEECCSHHHHTCTTSCEEEECTTSBEEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHH
T ss_pred hh-cCCCEEEEEEEcCCHHHccCCCceEEEECCCCeEEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHH
Confidence 75 34445555566652 3446788999888899999999999888765310 0121 23678999999999999988
Q ss_pred cCCCCCCCCCccchhhhhhhhcCCeeEEEEe-cCCCCCCCCHHHHHHHHHHHH
Q 027992 159 PGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 159 ~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~-~~~~idIdt~~Dl~~ae~il~ 210 (215)
..++++.+|..|.++++++++.|.+|+++.. +..+++||||+||+.|+++|+
T Consensus 212 ~~~~~~~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l~ 264 (264)
T 3k8d_A 212 VNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 264 (264)
T ss_dssp HHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC-
T ss_pred HhCCCChhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHhC
Confidence 7777788888888999999999999999864 678999999999999999874
No 4
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=99.95 E-value=3e-27 Score=190.63 Aligned_cols=203 Identities=40% Similarity=0.662 Sum_probs=163.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHHHHcCC
Q 027992 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 87 (215)
Q Consensus 9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~ 87 (215)
.+++|+|+|++++|.+.+.++|++++....+...|++++..++..+. .+.|.+++++||+||+++++|+++++.+.++
T Consensus 41 ~~~~ivVv~~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~- 119 (252)
T 3oam_A 41 GADRVIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAAC- 119 (252)
T ss_dssp TCSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHHHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHS-
T ss_pred CCCeEEEECCHHHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhc-
Confidence 48999999999999999999999987665566688988888888773 2568999999999999999999999999753
Q ss_pred CceEEeecccCC-CCccCCCCceEEEEcCCCceecccCCCCCCCCCC--CCCC--CCCeeEEeeeeeechHHHhhCcCCC
Q 027992 88 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG--KVNP--QFPYLLHLGIQSYDSNFLKIYPGLH 162 (215)
Q Consensus 88 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~--~~~q--~~p~~~~~~~~~~~~~~l~~~~~~~ 162 (215)
++.+++.+.++. +..+.+|+.++++.+++|.+.+|++.++|+.++. ..++ ..+...+.+.|+|+.++|..+..+.
T Consensus 120 ~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~ 199 (252)
T 3oam_A 120 SAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQ 199 (252)
T ss_dssp SCSEEEEEEEECCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSC
T ss_pred CCCEEEEeeecCCHHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCC
Confidence 333444445554 2335678888888888999999999988876531 0111 1236779999999999998887777
Q ss_pred CCCCCCccchhhhhhhhcCCeeEEEEe-cCCCCCCCCHHHHHHHHHHHHhh
Q 027992 163 PTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 163 ~~~~~~~e~l~~~~~~~~g~~v~~~~~-~~~~idIdt~~Dl~~ae~il~~~ 212 (215)
++.+++.|.++++++++.|.+|.++.. +...+|||||+||+.|+++++.+
T Consensus 200 ~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 200 PSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 777788888999998889999999865 46889999999999999999876
No 5
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=99.88 E-value=1.6e-21 Score=157.77 Aligned_cols=204 Identities=40% Similarity=0.654 Sum_probs=142.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHHHHHHHc-C
Q 027992 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQA-A 86 (215)
Q Consensus 9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~-~ 86 (215)
.+++|+|+|+++++.++++++|+.++.++....+|++++..++..+. ...|.+++++||+||+++++|+++++.+.+ +
T Consensus 41 ~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 120 (262)
T 1vic_A 41 GASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFN 120 (262)
T ss_dssp TCSEEEEEESCHHHHHHHHHTTCEEEECCCSSCCHHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCceEEEECCcHHHHHHHHhcCCEEEECCccccCChHHHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcC
Confidence 34899999999999999988999987776566788887766666663 246899999999999999999999999864 3
Q ss_pred CCceEEeecccCCC-CccCCCCceEEEEcCCCceecccCCCCCCCCCCC-----C-CCCCC--eeEEeeeeeechHHHhh
Q 027992 87 PDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGK-----V-NPQFP--YLLHLGIQSYDSNFLKI 157 (215)
Q Consensus 87 ~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~-----~-~q~~p--~~~~~~~~~~~~~~l~~ 157 (215)
.++++. +.+... ++..+|..++++.+++|.+..|.+..+|+.|+.. + ..++| +..+.+.|+|+.+.+..
T Consensus 121 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~ 198 (262)
T 1vic_A 121 VNMASL--AVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQ 198 (262)
T ss_dssp CSEEEE--EEECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHH
T ss_pred CCEEEE--EEecCCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCccccccccccccccccceEEEEEEEEeeHHHHHH
Confidence 344443 334421 1112345666665677888777665544333210 0 11555 56788889998877665
Q ss_pred CcCCCCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHhhcC
Q 027992 158 YPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRERNL 214 (215)
Q Consensus 158 ~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~~~~ 214 (215)
+.....+..+..|.++..++++.|.++.+++++ ..++|||||+||..|+.+++.+|.
T Consensus 199 ~~~~~~~~~~~~e~~~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~~~ 256 (262)
T 1vic_A 199 YVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAANGS 256 (262)
T ss_dssp HHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCchhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCc
Confidence 433222222222333444555578899999987 799999999999999999988763
No 6
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=99.87 E-value=1.9e-20 Score=149.62 Aligned_cols=199 Identities=32% Similarity=0.552 Sum_probs=138.5
Q ss_pred cccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 5 ~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
.+++.+++|+|+|+++++.+.+.++|+.++.++.+..+|++++..++..+ +.|.+++++||+||+++++|+++++.+.
T Consensus 38 ~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~lv~~~D~P~~~~~~i~~l~~~~~ 115 (245)
T 1h7e_A 38 LQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKV--EADIYINLQGDEPMIRPRDVETLLQGMR 115 (245)
T ss_dssp HTCTTCCEEEEEESCHHHHHHHHHTTCEEEECCSCCSSHHHHHHHHHHHS--CCSEEEECCTTCTTCCHHHHHHHHHHHH
T ss_pred HhCCCCCeEEEECCcHHHHHHHHHcCCeEEeCCCccCCcHHHHHHHHHhC--CCCEEEEEcCCcCcCCHHHHHHHHHHHH
Confidence 34555699999999999999998899998777656667888888888877 4689999999999999999999999986
Q ss_pred cC--CCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCC--CCeeEEeeeeeechHHHhhCcC
Q 027992 85 AA--PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--FPYLLHLGIQSYDSNFLKIYPG 160 (215)
Q Consensus 85 ~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~--~p~~~~~~~~~~~~~~l~~~~~ 160 (215)
++ .+.++.+ .+..+....+|.+++++.+++|.+..|.+...|.. +++ .+.+.+.+.|+|+.+.+..+..
T Consensus 116 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----r~~~~~~~~~~~g~y~~~~~~l~~~~~ 188 (245)
T 1h7e_A 116 DDPALPVATLC--HAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYP-----RNAEKARYLKHVGIYAYRRDVLQNYSQ 188 (245)
T ss_dssp HCTTCCEEEEE--EEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCC-----TTGGGCCEEEEEEEEEEEHHHHHHGGG
T ss_pred hCCCCCEEEEe--ecCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCC-----cccccCceeEEEEEEEcCHHHHHHHHh
Confidence 53 3444443 23211111355677766567788776665433321 232 2355688899999887765433
Q ss_pred CCCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992 161 LHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 161 ~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~ 212 (215)
+..+.++..+.+...++++.|.++..++++..++|||||+||..|+.+++.+
T Consensus 189 ~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~~ 240 (245)
T 1h7e_A 189 LPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQE 240 (245)
T ss_dssp SCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Confidence 2222111111122233334688999999888999999999999999998754
No 7
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=99.81 E-value=1.9e-18 Score=137.04 Aligned_cols=191 Identities=34% Similarity=0.557 Sum_probs=131.3
Q ss_pred CCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCc
Q 027992 10 FCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 89 (215)
Q Consensus 10 ~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~ 89 (215)
+++|+|+|+++++.+.++++ +.++.++.+..+|++++..++..+ +.|.+++++||+||+++++|+++++.+.++. .
T Consensus 41 ~~~i~v~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~--~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~-~ 116 (234)
T 2y6p_A 41 GERVILATDSERVKEVVEDL-CEVFLTPSDLPSGSDRVLYVVRDL--DVDLIINYQGDEPFVYEEDIKLIFRELEKGE-R 116 (234)
T ss_dssp TSCEEEEESCHHHHHHHTTT-SEEEECCTTCCSHHHHHHHHHTTC--CCSEEEECCTTCCCCCHHHHHHHHHHHHHTC-S
T ss_pred CCEEEEECChHHHHHHHHhc-eEEEECCcccccchHHHHHHHHhC--CCCEEEEecCCcCcCCHHHHHHHHHHHHhCC-C
Confidence 89999999998888888777 777666666668888877777665 4689999999999999999999999987543 3
Q ss_pred eEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCC-CCCeeEEeeeeeechHHHhhCcCCCCCCCCC
Q 027992 90 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP-QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQL 168 (215)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q-~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 168 (215)
++++.. + ...+..+|.+++++.+++|.+..|.+.+.++. ++| +.+...+.+.|+|+.+.+..+.......++.
T Consensus 117 ~~~~~~-~-~~~~~~~~~~~~~~~~~~g~v~~~~e~~~~~~----~~~~~~~~~~~~giy~~~~~~l~~~~~~~~~~~~~ 190 (234)
T 2y6p_A 117 VVTLAR-K-DKEAYERPEDVKVVLDREGYALYFSRSPIPYF----RKNDTFYPLKHVGIYGFRKETLMEFGAMPPSKLEQ 190 (234)
T ss_dssp EEEEEE-E-CSGGGGCTTSCEEEECTTSBEEEEESSCCSCC----SSCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHH
T ss_pred eEEEec-C-CHHHhcCCCceEEEEcCCCCEeeeecCCCCcc----cccccceeeEEEEEEEcCHHHHHHHHhCCCCccch
Confidence 444322 2 11112355676665567787765654432211 222 3345568889999987766543222221122
Q ss_pred ccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992 169 EEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 169 ~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~ 210 (215)
.+.+...+.+..|.++..++.+..++||||++||..|+.+++
T Consensus 191 ~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~~ 232 (234)
T 2y6p_A 191 IEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKLK 232 (234)
T ss_dssp HHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHHh
Confidence 222233344446889999998889999999999999999875
No 8
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=99.78 E-value=2.6e-18 Score=136.53 Aligned_cols=178 Identities=21% Similarity=0.251 Sum_probs=118.4
Q ss_pred cccCCCCcEEEEcCcHHHH---HHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCC--CCEEEEecCCCCCCCHHHHHHH
Q 027992 5 CHSFLFCGLVVATDDEKIA---ECCQQFGADVIMTSESCRNGTERCNEALQKLEKK--YDIVVNIQGDEPLIEPEIIDGV 79 (215)
Q Consensus 5 ~~~~~~d~ivV~td~~~i~---~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~--~d~v~~~~~d~Pli~~~~i~~~ 79 (215)
.+++.+++|+|+++.+++. +.+.. ++.++... . +...++++|+..+... .|+|++|+||+||+++++|+++
T Consensus 46 ~~~~~~~~ivVv~~~~~~~~~~~~~~~-~v~~v~gg-~--~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~l 121 (231)
T 3q80_A 46 LDSGVVDTVVVAVPADRTDEARQILGH-RAMIVAGG-S--NRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARV 121 (231)
T ss_dssp HHTSCCCEEEEEECGGGHHHHHHHHGG-GCEEEECC-S--SHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHH
T ss_pred HhCCCCCeEEEECChHHHHHHHHHhcC-CeEEEcCC-C--chHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHH
Confidence 3456799999999876543 33332 45544321 1 2356789999888532 6899999999999999999999
Q ss_pred HHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-
Q 027992 80 VKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY- 158 (215)
Q Consensus 80 i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~- 158 (215)
++.+.++.++++++ .|.. ++++.+ +++|.+. + ++ .|+. .+..+++|+|+...|.+.
T Consensus 122 i~~~~~~~~~~i~~--~p~~-------dt~~~~-~~~g~v~---~--~~-~r~~-------l~~~qTPq~F~~~~L~~a~ 178 (231)
T 3q80_A 122 VEALRDGYAAVVPV--LPLS-------DTIKAV-DANGVVL---G--TP-ERAG-------LRAVQTPQGFTTDLLLRSY 178 (231)
T ss_dssp HHHHHTTCSEEEEE--ECCS-------SCEEEE-CTTSBEE---E--CC-CGGG-------EEEECSCEEEEHHHHHHHH
T ss_pred HHHHhhcCCeEEEE--Eecc-------CCEEEE-cCCCcEE---E--ec-chhh-------eEEEcCCcEEEHHHHHHHH
Confidence 99987645666664 4554 678765 5566543 1 12 2222 344566799988766542
Q ss_pred cCCCCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992 159 PGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 159 ~~~~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~ 210 (215)
....... +.....+...+++ .|.++.+++++..|+|||||+||.+||++|+
T Consensus 179 ~~~~~~n-~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l~ 230 (231)
T 3q80_A 179 QRGSLDL-PAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVR 230 (231)
T ss_dssp HHHTC------CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHHH
T ss_pred HHHHhhc-CCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHhc
Confidence 2211100 0011124444444 7999999999999999999999999999986
No 9
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=99.74 E-value=4.5e-17 Score=129.03 Aligned_cols=179 Identities=19% Similarity=0.183 Sum_probs=120.0
Q ss_pred ccccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCC----CCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992 4 MCHSFLFCGLVVATDDEKIAECCQQFGADVIMTSE----SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 79 (215)
Q Consensus 4 a~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~----~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~ 79 (215)
+.+++.+++|+|+|+++++.++++++|++++.++. ...+++.++.+|+..+. +.|.+++++||+||+++++|+++
T Consensus 38 ~~~~~~~~~ivv~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~al~~~~-~~d~vlv~~~D~Pli~~~~i~~l 116 (229)
T 1qwj_A 38 ALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHN-EVDIVGNIQATSPCLHPTDLQKV 116 (229)
T ss_dssp HHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCGGGSSTTCCHHHHHHHHHTTCT-TCSEEEEECTTCTTCCHHHHHHH
T ss_pred HHhCCCcCEEEEECChHHHHHHHHHcCCEEEeChhhhcCCCCcHHHHHHHHHHhcC-CCCEEEEecCCCCcCCHHHHHHH
Confidence 34556689999999999999999999999877763 33455678889988773 56899999999999999999999
Q ss_pred HHHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCe--eEEeeeeeechHHHh
Q 027992 80 VKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPY--LLHLGIQSYDSNFLK 156 (215)
Q Consensus 80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~--~~~~~~~~~~~~~l~ 156 (215)
++.+.+ +.++++++. +. .+|...++ .+ |.. .|.+..+++.....++|+.|. ..+.+.|+|+.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~--~~-----~~p~~~~v-~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~n~giY~~~~~~l~ 185 (229)
T 1qwj_A 117 AEMIREEGYDSVFSVV--RR-----HQFRWSEI-QK--GVR-EVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLIE 185 (229)
T ss_dssp HHHHHSSCCSEEEEEE--EE-----CCCEECCC-CS--STT-CCCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHHH
T ss_pred HHHHHhCCCCEEEEEe--ec-----cChhHhhc-cc--ccc-ccccccccccccccCCCCCCceEEEeeEEEEEEHHHhc
Confidence 999865 335555543 22 13333332 12 321 133322332200014566654 446777888876551
Q ss_pred hCcCCCCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHhhc
Q 027992 157 IYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRERN 213 (215)
Q Consensus 157 ~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~~~ 213 (215)
. .+..|..+.++..+ ...+||||++||..|+.+++..+
T Consensus 186 ~-------------------~~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~~~ 224 (229)
T 1qwj_A 186 M-------------------GYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLRFG 224 (229)
T ss_dssp T-------------------TCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHHHS
T ss_pred c-------------------ccccCCeEEEEECCcccccCCCCHHHHHHHHHHHHHhc
Confidence 0 01145566553544 68999999999999999998764
No 10
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=99.73 E-value=5.5e-17 Score=128.24 Aligned_cols=177 Identities=18% Similarity=0.190 Sum_probs=115.1
Q ss_pred cccCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCC---c-hHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 5 CHSFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRN---G-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 5 ~~~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~---~-~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
.+++.+++|+|+|+++++.++++++|+.++.++..+.. | ..++++|+..+..+.|.+++++||+||+++++|++++
T Consensus 40 ~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~sv~~~l~~~~~~~d~vlv~~~D~P~~~~~~i~~l~ 119 (228)
T 1ezi_A 40 ISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAF 119 (228)
T ss_dssp HHHCCCSEEEEEESCHHHHHHHHHTTCEEEECCC------CHHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHH
T ss_pred HhCCCCCEEEEECCCHHHHHHHHHcCCEEEeCchHHcCCCCChHHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHHHHHHH
Confidence 34556899999999999988888899988767653332 2 3468889888743468999999999999999999999
Q ss_pred HHHHc-CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccC-CCCCCCCCCCCCCCCCee--EEeeeeeechHHHh
Q 027992 81 KALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR-GLIPYNKSGKVNPQFPYL--LHLGIQSYDSNFLK 156 (215)
Q Consensus 81 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~ip~~~~~~~~q~~p~~--~~~~~~~~~~~~l~ 156 (215)
+.+.+ +.++++++ .+.. .+|....++ +++|.+..|.+ ... + .++|+++.. .+.+.|+|....+.
T Consensus 120 ~~~~~~~~~~~~~~--~~~~----~~p~~~~~~-~~~g~~~~~~~~~~~-~----~~~~~~~~~~~~~~giy~~~~~~l~ 187 (228)
T 1ezi_A 120 SLFDEKIKGSVVSA--CPME----HHPLKTLLQ-INNGEYAPMRHLSDL-E----QPRQQLPQAFRPNGAIYINDTASLI 187 (228)
T ss_dssp TTCCTTTCCCEEEE--EECS----SCTTSCEEE-CC--CEEESSCHHHH-T----CCGGGSCCEEEEEEEEEEEEHHHHH
T ss_pred HHHHhcCCCEEEEE--EecC----CCcceeeEE-cCCCcEeeccccccc-c----CCcccCchhheeeeEEEEEeHHHHh
Confidence 88754 33555553 3432 113333333 56676654432 110 0 134555433 34556777766554
Q ss_pred hCcCCCCCCCCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHh
Q 027992 157 IYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 157 ~~~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~ 211 (215)
... ++ .|.++..+..+ ..++|||||+||..|+.+++.
T Consensus 188 ~~~----------------~~--~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~~ 225 (228)
T 1ezi_A 188 ANN----------------CF--FIAPTKLYIMSHQDSIDIDTELDLQQAENILNH 225 (228)
T ss_dssp HHT----------------SS--CCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC-
T ss_pred hCC----------------cc--cCCceEEEEeCcccccCCCCHHHHHHHHHHHHh
Confidence 321 11 35666666654 689999999999999999865
No 11
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=99.64 E-value=9.6e-15 Score=116.83 Aligned_cols=179 Identities=17% Similarity=0.232 Sum_probs=117.0
Q ss_pred cccCCCCcEEEEcCcHH---HHHHHHHcCCe--E-EeCCCCCCCchHHHHHHHHHhcC-----CCCEEEEecCCCCCCCH
Q 027992 5 CHSFLFCGLVVATDDEK---IAECCQQFGAD--V-IMTSESCRNGTERCNEALQKLEK-----KYDIVVNIQGDEPLIEP 73 (215)
Q Consensus 5 ~~~~~~d~ivV~td~~~---i~~~~~~~g~~--v-~~~~~~~~~~~~~i~~~l~~~~~-----~~d~v~~~~~d~Pli~~ 73 (215)
.+++.+++|+|++..+. +.+.+++++.. + +..... +-..+++.|+..+.. +.|.|++++||+||+++
T Consensus 43 ~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~ 120 (246)
T 3f1c_A 43 ILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEGGE--DRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTH 120 (246)
T ss_dssp HTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEEEECCS--SHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCH
T ss_pred HcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEEEECCCC--chHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCH
Confidence 34556999999997654 44566666422 2 222212 334578889888743 36899999999999999
Q ss_pred HHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechH
Q 027992 74 EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSN 153 (215)
Q Consensus 74 ~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~ 153 (215)
++|+++++.+.++ ++.+++ .+.. ++++.. +++|.+.. + ..|+. .+..+++++|+..
T Consensus 121 ~~i~~li~~~~~~-~a~i~~--~~~~-------d~i~~~-~~~~~v~~-----~-~~r~~-------l~~~qtpq~f~~~ 176 (246)
T 3f1c_A 121 RIIEENIDAALET-GAVDTV--IEAL-------DTIVES-SNHEVITD-----I-PVRDH-------MYQGQTPQSFNMK 176 (246)
T ss_dssp HHHHHHHHHHHHT-SEEEEE--EECS-------SCEEEC-SSSSBCCB-----C-CCGGG-------EEEEEEEEEEEHH
T ss_pred HHHHHHHHHHHhc-CCEEEE--Eecc-------ceEEEe-cCCCeEEE-----e-cChHH-------hhhhcCCceeEHH
Confidence 9999999999764 555553 3443 566542 34443221 1 12211 3456678899987
Q ss_pred HHhh-CcCCCCCCCCCccc-hhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992 154 FLKI-YPGLHPTPLQLEED-LEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 154 ~l~~-~~~~~~~~~~~~e~-l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~ 212 (215)
.|.+ +..... ....+ .+....++ .|.++.+++++..++|||||+||..||++|+.+
T Consensus 177 ~L~~a~~~~~~---~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~ 235 (246)
T 3f1c_A 177 KVFNHYQNLTP---EKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQER 235 (246)
T ss_dssp HHHHHHHTSCH---HHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhcc
Confidence 6654 222210 01112 23334333 799999999999999999999999999999875
No 12
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=99.46 E-value=6e-13 Score=104.77 Aligned_cols=178 Identities=16% Similarity=0.191 Sum_probs=105.8
Q ss_pred ccCCCCcEEEEcCcHH--HHH-HHHHcCCeE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 6 HSFLFCGLVVATDDEK--IAE-CCQQFGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~--i~~-~~~~~g~~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
+++.+++|+|+|+++. +.+ +...+|..+ +..+ . .+-..++++|+..+..+.+.+++++||+||+++++|+++++
T Consensus 44 ~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~sv~~al~~~~~~~~~vl~~d~d~P~~~~~~i~~l~~ 121 (228)
T 2yc3_A 44 RMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIP-G-KERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLK 121 (228)
T ss_dssp HCTTEEEEEEECCGGGHHHHHTTTTTSSSEEEEECC-C-SSHHHHHHHHHTTSCTTCSEEEEEETTCTTCCHHHHHHHHH
T ss_pred cCCCCCeEEEEEChHHHHHHHHHHHhCCCcEEEECC-C-CCHHHHHHHHHHhhccCCCEEEEecCCCccCCHHHHHHHHH
Confidence 4457899999997653 432 333455554 3332 1 23345788888877545689999999999999999999999
Q ss_pred HHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-CcC
Q 027992 82 ALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPG 160 (215)
Q Consensus 82 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~~ 160 (215)
.+.+. ++.+.+ .+.. ++++.+ +++|.+. + . + .+ .. .+...+.|+|+...+.+ +..
T Consensus 122 ~~~~~-~~~i~~--~~~~-------~~~~~~-~~~~~v~---~-~-~-~~-----~~--~~~~~~~~~f~~~~l~~~~~~ 177 (228)
T 2yc3_A 122 DGSAV-GAAVLG--VPAK-------ATIKEV-NSDSLVV---K-T-L-DR-----KT--LWEMQTPQVIKPELLKKGFEL 177 (228)
T ss_dssp HHHHH-SEEEEE--EECC-------SCCCCB-CTTSCBC---C-C-C-SC-----CC--CEEEEEEEEECHHHHHHHHHH
T ss_pred HHHhc-CceEEE--Eecc-------ceEEEE-cCCCceE---E-e-c-Cc-----cc--eEEEeCCcEEEHHHHHHHHHH
Confidence 98653 333332 2332 233333 3444322 1 1 1 11 11 23455688898754433 211
Q ss_pred CCCCCCCCccchhhhhhh-hcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992 161 LHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 161 ~~~~~~~~~e~l~~~~~~-~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~ 212 (215)
+........ +...++ ..|.++..++.+..++|||||+||..|+.+++.+
T Consensus 178 ~~~~~~~~~---~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~ 227 (228)
T 2yc3_A 178 VKSEGLEVT---DDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSED 227 (228)
T ss_dssp HHHHTCCCC---STTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHTC-
T ss_pred HHhcCCCcc---cHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHhhc
Confidence 100000001 111222 2688887777777899999999999999998754
No 13
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=99.42 E-value=1e-11 Score=98.07 Aligned_cols=173 Identities=17% Similarity=0.173 Sum_probs=104.4
Q ss_pred cccCCCCcEEEEcCcHHHHHHHHH--cCCeEEeCCCCCCCc---hHHHHHHHHHhcC-CCCEEEEecCCCCCCCHHHHHH
Q 027992 5 CHSFLFCGLVVATDDEKIAECCQQ--FGADVIMTSESCRNG---TERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDG 78 (215)
Q Consensus 5 ~~~~~~d~ivV~td~~~i~~~~~~--~g~~v~~~~~~~~~~---~~~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~i~~ 78 (215)
.+++.+++|+|+|+++....+.+. ++..+.. ..+| ..++++|+..+.. +.|.+++++||+||+++++|++
T Consensus 52 ~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~----~~gg~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~ 127 (234)
T 1vpa_A 52 LKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGI----VEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSE 127 (234)
T ss_dssp HHCTTCSEEEEEECGGGHHHHHTTCCCTTEEEE----EECCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHH
T ss_pred HcCCCCCeEEEEEChHHHHHHHHHhccCCceEE----eCCCCcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHH
Confidence 345568999999987654322221 1222211 1122 2468889888743 4689999999999999999999
Q ss_pred HHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC
Q 027992 79 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY 158 (215)
Q Consensus 79 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~ 158 (215)
+++.+..+ ++.+++ .+.. ++++.+ +++| + .+ + .++ ..+...++++|+...+.+.
T Consensus 128 l~~~~~~~-~~~i~~--~~~~-------~~~~~~-~~~g-v-~~-----~-~r~-------~~~~~~~p~~f~~~~l~~~ 181 (234)
T 1vpa_A 128 VLRRARET-GAATLA--LKNS-------DALVRV-ENDR-I-EY-----I-PRK-------GVYRILTPQAFSYEILKKA 181 (234)
T ss_dssp HHHHHHHH-SEEEEE--EECC-------SEEEEE-ETTE-E-EE-----E-CCT-------TEEEEEEEEEEEHHHHHHH
T ss_pred HHHHHHhc-CCEEEE--EecC-------CcEEEE-CCCC-c-cc-----C-Chh-------HeeeecCCccccHHHHHHH
Confidence 99988653 444432 2332 344444 4455 2 11 1 111 1233456788887665543
Q ss_pred cCCCCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhhc
Q 027992 159 PGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN 213 (215)
Q Consensus 159 ~~~~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~~ 213 (215)
.... . .. .+...++. .|.++..++.+..++|||||+||+.|+.+++.++
T Consensus 182 ~~~~--~-~~---~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~ 231 (234)
T 1vpa_A 182 HENG--G-EW---ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREWE 231 (234)
T ss_dssp HTTC--C-CC---SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHHHC
T ss_pred HHhc--C-CC---CcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHhccc
Confidence 2211 0 00 01112232 5778887776667999999999999999998764
No 14
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=99.41 E-value=2.5e-11 Score=94.96 Aligned_cols=175 Identities=20% Similarity=0.244 Sum_probs=106.1
Q ss_pred ccCCCCcEEEEcCcHHHHHHHHHc-CCeE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 6 HSFLFCGLVVATDDEKIAECCQQF-GADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~i~~~~~~~-g~~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+++.+++|+|+|+++....+.+.. +..+ +.... .+...++..|+..+ .+.|.+++++||+||+++++|+++++.+
T Consensus 42 ~~~~~~~i~vv~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~i~~al~~~-~~~~~vlv~~~D~P~~~~~~i~~l~~~~ 118 (223)
T 2xwl_A 42 ASGVIDRIVIAVPPALTDESKLVFGGEDSVIVSGG--VDRTESVALALEAA-GDAEFVLVHDAARALTPPALIARVVAAL 118 (223)
T ss_dssp HHSCCSEEEEEECGGGHHHHHHHTCBTTEEEEECC--SSHHHHHHHHHTTC-TTCSEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcccHHHHHHHHhccCCeEEEcCC--CCHHHHHHHHHHhc-CCCCEEEEEcCCcccCCHHHHHHHHHHH
Confidence 345589999999876543333332 2233 22221 24456788888877 2568999999999999999999999988
Q ss_pred -HcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCC
Q 027992 84 -QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLH 162 (215)
Q Consensus 84 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~ 162 (215)
.. .++.+++ .+.. ++++.+ +++|.+..+. .+ . +.....+.++|....+.......
T Consensus 119 ~~~-~~~~i~~--~~~~-------d~~~~~-~~~g~~~~~~------e~-----~--~l~~~~~p~~f~~~~l~~~~~~~ 174 (223)
T 2xwl_A 119 KEG-HSAVVPG--LAPA-------DTIKAV-DANGAVLGTP------ER-----A--GLRAVQTPQGFHADVLRRAYARA 174 (223)
T ss_dssp HHT-CSEEEEE--ECCS-------SCEEEE-CTTSBEEECC------CG-----G--GEEEECSCEEEEHHHHHHHHTTC
T ss_pred hhc-CCeEEEE--Eecc-------cceEEE-cCCCcEEeec------Ch-----H--HheeeeCCcccCHHHHHHHHHHh
Confidence 44 3555442 3332 344444 5566543211 11 0 12223446778765543321110
Q ss_pred CCCCCCccch-hhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992 163 PTPLQLEEDL-EQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 163 ~~~~~~~e~l-~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~ 212 (215)
. . .++ +...++. .|.++..++.+...+|||||+||..|+.+++.+
T Consensus 175 ~-~----~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~ 221 (223)
T 2xwl_A 175 T-A----GGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAHH 221 (223)
T ss_dssp C-S----CCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHHT
T ss_pred h-C----CCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhhc
Confidence 0 0 011 1122332 577888888777889999999999999998765
No 15
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=99.40 E-value=4.6e-12 Score=109.52 Aligned_cols=186 Identities=15% Similarity=0.173 Sum_probs=113.2
Q ss_pred CCCcEEEEc--CcHHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 9 LFCGLVVAT--DDEKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 9 ~~d~ivV~t--d~~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
.+++|+|+| +.+++.+.+..+++.++..+.. .|+ .+++.|+..+. +.|.+++++||+||+++++++++++.+.+
T Consensus 50 ~~~~i~vv~~~~~~~i~~~~~~~~~~~v~~~~~--~g~~~~i~~~~~~~~-~~~~~lv~~~D~P~i~~~~i~~l~~~~~~ 126 (459)
T 4fce_A 50 GAQHVHLVYGHGGELLKKTLADPSLNWVLQAEQ--LGTGHAMQQAAPHFA-DDEDILMLYGDVPLISVDTLQRLLAAKPE 126 (459)
T ss_dssp TCSCEEEEESSCHHHHHHHC-----CEEECSSC--CCHHHHHHHHGGGSC-TTSEEEEEETTCTTCCHHHHHHHHHHCCT
T ss_pred CCCcEEEEeCCCHHHHHHHhccCCcEEEeCCCC--CCcHHHHHHHHHhcC-CCCcEEEEeCCcccCCHHHHHHHHHHHhh
Confidence 389999999 4577877777777777654322 344 57888888874 46899999999999999999999998754
Q ss_pred CCCceEEeecccCCCCccCCCC-ceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-cCCCC
Q 027992 86 APDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP 163 (215)
Q Consensus 86 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~~~~~ 163 (215)
.+..+.. .+.. +|. ..++..+ +|.+..+.+.+.+ ...+......+.+.|+|+...+..+ ..+..
T Consensus 127 -~~~~~~~--~~~~-----~~~~~g~v~~~-~g~v~~~~ek~~~-----~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 192 (459)
T 4fce_A 127 -GGIGLLT--VKLD-----NPSGYGRIVRE-NGDVVGIVEHKDA-----SDAQREINEINTGILVANGRDLKRWLSLLDN 192 (459)
T ss_dssp -TSEEEEE--EECS-----CCTTSCEEEEE-TTEEEEEECGGGC-----CTTGGGCCEEEEEEEEEEHHHHHHHHHTCCC
T ss_pred -CCEEEEE--EecC-----CCCcccEEEeC-CCcEEEEEECCCC-----ChHHhhccEEEEEEEEEEHHHHHHHHHHhCc
Confidence 3444332 3332 111 2233333 5666544322110 0112222456778899988765432 22111
Q ss_pred CCCCCcc-ch-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHhh
Q 027992 164 TPLQLEE-DL-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 164 ~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~~ 212 (215)
.. ...+ ++ +... +...|.++..++.+ ..+++|||++||..|+.+++.+
T Consensus 193 ~~-~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~ 245 (459)
T 4fce_A 193 NN-AQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTE 245 (459)
T ss_dssp CS-TTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred cc-cCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHH
Confidence 10 1111 12 2223 33368899998876 6889999999999999998753
No 16
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=99.39 E-value=1.6e-11 Score=96.75 Aligned_cols=173 Identities=12% Similarity=0.098 Sum_probs=104.3
Q ss_pred ccCCCCcEEEEc--CcHHHHHHHHHcCC-eE-EeCCCCCCCchHHHHHHHHHhcC-----CCCEEEEecCCCCCCCHHHH
Q 027992 6 HSFLFCGLVVAT--DDEKIAECCQQFGA-DV-IMTSESCRNGTERCNEALQKLEK-----KYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 6 ~~~~~d~ivV~t--d~~~i~~~~~~~g~-~v-~~~~~~~~~~~~~i~~~l~~~~~-----~~d~v~~~~~d~Pli~~~~i 76 (215)
+++.+++|+|+| +++.+.+ +.++|. .+ +..+ . .+...+++.|+..+.. ..|.+++++||+||+++++|
T Consensus 46 ~~~~~~~ivvv~~~~~~~~~~-~~~~~~~~i~~~~~-~-~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i 122 (231)
T 1vgw_A 46 RHEAVDLTVVVVSPEDTFADK-VQTAFPQVRVWKNG-G-QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEAL 122 (231)
T ss_dssp TCTTCCEEEEECCTTCSTHHH-HHHHCTTSEEECCC-C-SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHH
T ss_pred cCCCCCeEEEEECccHHHHHH-HHhcCCCceEEEcC-C-CcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHH
Confidence 445689999999 3456766 555553 22 2222 2 1334468888877632 46899999999999999999
Q ss_pred HHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHh
Q 027992 77 DGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK 156 (215)
Q Consensus 77 ~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~ 156 (215)
+++++.+.++.++.+.+ .+.. ++++.. ++|.+. + . + .+ . ......+.++|+...+.
T Consensus 123 ~~l~~~~~~~~~~~~~~--~~~~-------~~~~~~--~~g~i~---~-~-~-~~-----~--~~~~~~~p~~f~~~~l~ 178 (231)
T 1vgw_A 123 ARLIEQAGNAAEGGILA--VPVA-------DTLKRA--ESGQIS---A-T-V-DR-----S--GLWQAQTPQLFQAGLLH 178 (231)
T ss_dssp HHHHHHHTTCTTCEEEE--EECC-------SCEEEE--SSSBEE---E-E-E-CC-----T--TEEEEEEEEEEEHHHHH
T ss_pred HHHHHHHhhcCCeEEEE--eecc-------cceEEe--CCCceE---e-c-C-Ch-----H--HheeeeCCcEecHHHHH
Confidence 99999986543333332 2332 344432 345322 1 1 1 11 1 13445568889876554
Q ss_pred hC-cCCCCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992 157 IY-PGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 157 ~~-~~~~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~ 210 (215)
.. ........ .+...++. .|.++..++.+...+|||||+||..|+.+++
T Consensus 179 ~~~~~~~~~g~-----~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 229 (231)
T 1vgw_A 179 RALAAENLGGI-----TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD 229 (231)
T ss_dssp HHHHC----CC-----CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHCC
T ss_pred HHHHHHhhcCC-----CcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHHh
Confidence 42 21110000 01122222 4778888887778999999999999998864
No 17
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=99.32 E-value=6.5e-11 Score=93.33 Aligned_cols=176 Identities=16% Similarity=0.221 Sum_probs=105.6
Q ss_pred ccCCCCcEEEEcCcHH---HHHHHHHcCCeE----EeCCCCCCCchHHHHHHHHHhc---C--CCCEEEEecCCCCCCCH
Q 027992 6 HSFLFCGLVVATDDEK---IAECCQQFGADV----IMTSESCRNGTERCNEALQKLE---K--KYDIVVNIQGDEPLIEP 73 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~---i~~~~~~~g~~v----~~~~~~~~~~~~~i~~~l~~~~---~--~~d~v~~~~~d~Pli~~ 73 (215)
+++.+++|+|+|+++. +.++++++|+.+ ...+ .-.+...++++|+..+. . +.|.+++++||+||+++
T Consensus 43 ~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~ 121 (236)
T 2vsh_A 43 LEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITK-GGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITL 121 (236)
T ss_dssp TCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEEEE-CCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCH
T ss_pred cCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEEEC-CCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCH
Confidence 4456899999997654 777777777321 1111 11123457888888773 2 45899999999999999
Q ss_pred HHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCC-ceecccCCCCCCCCCCCCCCCCCeeEEeeeeeech
Q 027992 74 EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHG-YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDS 152 (215)
Q Consensus 74 ~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~ 152 (215)
++|+++++.+.++ ++.+.+ .+.. ++++. .++| .+..+ . .+ . +.....+.++|+.
T Consensus 122 ~~i~~l~~~~~~~-~~~~~~--~~~~-------~~~~~--~~~g~~~~~~-----~-~~-----~--~~~~~~~p~~f~~ 176 (236)
T 2vsh_A 122 RMIQDNIQLAQNH-DAVDTV--VEAV-------DTIVE--STNGQFITDI-----P-NR-----A--HLYQGQTPQTFRC 176 (236)
T ss_dssp HHHHHHHHHHHHS-SEEEEE--EECC-------SCEEE--CSSSSBCCBC-----C-CG-----G--GEEEEEEEEEEEH
T ss_pred HHHHHHHHHHHhc-CcEEEE--Eecc-------ccEEE--eCCCCeeeee-----c-Ch-----H--HheeecCCcEecH
Confidence 9999999998754 332322 3432 34443 2455 43211 1 11 1 1222244788877
Q ss_pred HHHhh-CcCCCCCCCCCccc-h-hhhhhh-hcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992 153 NFLKI-YPGLHPTPLQLEED-L-EQLKVL-ENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 153 ~~l~~-~~~~~~~~~~~~e~-l-~~~~~~-~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~ 211 (215)
..+.. +.... ....+ + +...++ ..|.++..++.+...+|||||+||..|+.++++
T Consensus 177 ~~l~~~~~~~~----~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~~ 235 (236)
T 2vsh_A 177 KDFMDLYGSLS----DEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIEK 235 (236)
T ss_dssp HHHHHHHHTCC----HHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHH----hcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhhc
Confidence 65443 22110 00001 1 111222 257788888877789999999999999998753
No 18
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=99.31 E-value=1.5e-10 Score=100.30 Aligned_cols=187 Identities=18% Similarity=0.152 Sum_probs=113.7
Q ss_pred CCCcEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 9 LFCGLVVATDD--EKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 9 ~~d~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
.+++|+|+|.. +++.+.+.+ ++.++..+ . ..|+ .+++.|+..+....|.+++++||+||+++++++++++.+++
T Consensus 53 g~~~iivv~~~~~~~i~~~~~~-~i~~v~~~-~-~~G~~~sl~~a~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 129 (468)
T 1hm9_A 53 QPEKTVTVVGHKAELVEEVLAG-QTEFVTQS-E-QLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHIN 129 (468)
T ss_dssp CCSEEEEEECTTHHHHHHSSSS-SSEEEECS-S-CCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHhCC-CcEEEeCC-c-cCChHHHHHHHHHHhccCCCeEEEEeCCccccCHHHHHHHHHHHHh
Confidence 58999999954 555544433 56665433 3 2344 46788888874336899999999999999999999999865
Q ss_pred CCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCC--CeeEEeeeeeechHHHhh-CcCC
Q 027992 86 APDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF--PYLLHLGIQSYDSNFLKI-YPGL 161 (215)
Q Consensus 86 ~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~--p~~~~~~~~~~~~~~l~~-~~~~ 161 (215)
. ++.+++...+.. +|.. -++..+++|.+..|.+.+. .++.. ....+.+.|+|+.+.+.+ +..+
T Consensus 130 ~-~~~~~i~~~~~~-----~~~~~g~v~~d~~g~v~~~~ek~~-------~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~ 196 (468)
T 1hm9_A 130 H-KNVATILTAETD-----NPFGYGRIVRNDNAEVLRIVEQKD-------ATDFEKQIKEINTGTYVFDNERLFEALKNI 196 (468)
T ss_dssp T-TCSEEEEEEECS-----CCTTSCEEEECTTCCEEEEECTTT-------CCTTGGGCCEEEEEEEEEEHHHHHHHHTTC
T ss_pred c-CCcEEEEEeccC-----CCCceeEEEECCCCCEEEEEECCC-------CChHHhcCeEEEEEEEEEEHHHHHHHHHhh
Confidence 3 233333333432 1222 2333466677665543211 11221 246678889998875543 2332
Q ss_pred CCCCCCCccch-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHh
Q 027992 162 HPTPLQLEEDL-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 162 ~~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~ 211 (215)
.........++ +... +++.|.++..++.+ +..++|||++||..|+.++..
T Consensus 197 ~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~ 250 (468)
T 1hm9_A 197 NTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRR 250 (468)
T ss_dssp CSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHH
T ss_pred ccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHH
Confidence 21110001111 2222 33468889888764 578999999999999988754
No 19
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=99.28 E-value=2.3e-10 Score=87.75 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=56.5
Q ss_pred CCCcEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 9 LFCGLVVATDD--EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 9 ~~d~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
.+++|+|+|+. +++.+.+..+|+.++..+....+...+++.|+..+..+.|.++++.||+||+++++|+++++.
T Consensus 45 ~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~ 120 (199)
T 2waw_A 45 PFDQLIVTLGGAADEVLEKVELDGLDIVLVDDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIAG 120 (199)
T ss_dssp SCSEEEEEECTTHHHHHHHSCCTTSEEEECCCCCTTCCCHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCHHHHHHHhccCCCEEEECCCcccCHHHHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHhh
Confidence 38999999964 567777766788876543222222457889988874356899999999999999999999998
No 20
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=99.26 E-value=4.4e-11 Score=94.62 Aligned_cols=177 Identities=10% Similarity=0.142 Sum_probs=103.8
Q ss_pred ccCCCCcEEEEcCc--HHHHHHHHHcCC-eE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 6 HSFLFCGLVVATDD--EKIAECCQQFGA-DV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 6 ~~~~~d~ivV~td~--~~i~~~~~~~g~-~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
+++.+++|+|+|+. +++.+ +..+|. .+ +..+. .+-..+++.|+..+. +.|.+++++||+||++++.|+++++
T Consensus 47 ~~~~~~~ivvv~~~~~~~~~~-~~~~~~~~v~~~~~~--~g~~~~i~~al~~~~-~~~~~lv~~~D~P~~~~~~i~~l~~ 122 (236)
T 1i52_A 47 AHPRVKRVVIAISPGDSRFAQ-LPLANHPQITVVDGG--DERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLA 122 (236)
T ss_dssp TSTTEEEEEEEECTTCCSGGG-SGGGGCTTEEEEECC--SSHHHHHHHHHHTST-TCSEEEECCTTCTTCCHHHHHHHHG
T ss_pred hCCCCCeEEEEeCccHHHHHH-HHhcCCCCEEEECCC--CCHHHHHHHHHHhcC-CCCEEEEEcCccccCCHHHHHHHHH
Confidence 34568999999963 45555 455543 23 33332 133457888888773 4689999999999999999999999
Q ss_pred HHHcCCCceEEeecccCCCCccCCCCceEEEEcCC-CceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh-Cc
Q 027992 82 ALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH-GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YP 159 (215)
Q Consensus 82 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~-~~ 159 (215)
.+.++....+++ .+.. ++++.+ +++ |... + .+ .+. ..+...++++|+...+.. +.
T Consensus 123 ~~~~~~~~~~~~--~~~~-------~~~~~~-~~~~~~i~---~-~~--~~~-------~i~~~~~p~~f~~~~l~~~~~ 179 (236)
T 1i52_A 123 LSETSRTGGILA--APVR-------DTMKRA-EPGKNAIA---H-TV--DRN-------GLWHALTPQFFPRELLHDCLT 179 (236)
T ss_dssp GGGTCSSCEEEE--EECC-------SCEEEE-CTTSSSEE---E-EE--CCT-------TCEEEEEEEEEEHHHHHHHHH
T ss_pred HHHhcCCeEEEE--Eecc-------ccEEEE-cCCCCcee---e-cc--ChH-------hheeeeCCceecHHHHHHHHH
Confidence 876543123332 2332 344444 333 3321 1 11 111 122334778887654432 11
Q ss_pred CCCCCCCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992 160 GLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 160 ~~~~~~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~ 212 (215)
........ ..+...++. .|.++..++.+...+|||||+||..|+.+++.+
T Consensus 180 ~~~~~g~~---~td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 180 RALNEGAT---ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRT 230 (236)
T ss_dssp HHHHTTCC---CCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred HHHhcCCC---cccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence 10000000 011123332 577888888877899999999999999998654
No 21
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=99.23 E-value=3.2e-10 Score=89.89 Aligned_cols=172 Identities=13% Similarity=0.143 Sum_probs=102.7
Q ss_pred cCCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992 7 SFLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 86 (215)
Q Consensus 7 ~~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~ 86 (215)
+..+++|+|+|++ ++.+ +...++.++. . ..+...+++.|+..+. .|.+++++||+||++++.|+++++.+.+.
T Consensus 62 ~~~~~~ivvv~~~-~~~~-~~~~~v~~~~-~--~~~~~~~i~~al~~~~--~~~vlv~~~D~P~~~~~~i~~l~~~~~~~ 134 (236)
T 2px7_A 62 FRDAAEVLVALPP-GAEP-PKGLGAVFLE-G--GATRQASVARLLEAAS--LPLVLVHDVARPFVSRGLVARVLEAAQRS 134 (236)
T ss_dssp TTTCSEEEEEECT-TCCC-CTTCSCEEEE-C--CSSHHHHHHHHHHHCC--SSEEEECCTTCCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEeCH-HHHH-hhcCCcEEEe-C--CCchHHHHHHHHHHcC--CCeEEEecCccccCCHHHHHHHHHHHHhc
Confidence 4568999999986 4444 3334555442 1 1233457888988873 68999999999999999999999988653
Q ss_pred CCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC-cCCCCCC
Q 027992 87 PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHPTP 165 (215)
Q Consensus 87 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~-~~~~~~~ 165 (215)
++.+++ .+.. +++++. + +|.+..+ + .++ +.....++++|+...+.+. .......
T Consensus 135 -~~~i~~--~~~~-------~~~~~~-~-~G~v~~~-----~-~~~-------~~~~~~~~~~f~~~~l~~~~~~~~~~g 189 (236)
T 2px7_A 135 -GAAVPV--LPVP-------DTLMAP-E-GEAYGRV-----V-PRE-------AFRLVQTPQGFFTALLREAHAYARRKG 189 (236)
T ss_dssp -SEEEEE--EECC-------SEEEEE-C-SSSCEEE-----E-CGG-------GCEEECSCEEEEHHHHHHHHHHHHHHT
T ss_pred -CCeEEE--EecC-------CcEEEe-c-CCeEEec-----C-ChH-------hhccccCCeEEcHHHHHHHHHHHHhcC
Confidence 444443 2332 344443 3 5543211 1 110 1223335677776544321 1000000
Q ss_pred CCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhhc
Q 027992 166 LQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN 213 (215)
Q Consensus 166 ~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~~ 213 (215)
... .+...++. .|.++..++.+...+|||||+||+.|+.+++.++
T Consensus 190 ~~~---~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~ 235 (236)
T 2px7_A 190 LEA---SDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALARVWS 235 (236)
T ss_dssp CCC---SSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC--
T ss_pred CCc---hhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHHHhcc
Confidence 000 11122332 5778888887778999999999999999997653
No 22
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=99.22 E-value=4.8e-10 Score=96.76 Aligned_cols=185 Identities=12% Similarity=0.170 Sum_probs=112.2
Q ss_pred CCCcEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992 9 LFCGLVVATDD--EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 86 (215)
Q Consensus 9 ~~d~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~ 86 (215)
.+++|+|+|+. +++.+.+.++++.++..+ ...+...++++++..+. ..|.+++++||+||+++++++++++.+.+
T Consensus 47 ~~~~iivv~~~~~~~i~~~~~~~~~~~v~~~-~~~g~~~~~~~~~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~- 123 (456)
T 2v0h_A 47 GSENIHLIYGHGGDLMRTHLANEQVNWVLQT-EQLGTAHAVQQAAPFFK-DNENIVVLYGDAPLITKETLEKLIEAKPE- 123 (456)
T ss_dssp TCSCEEEEECTTHHHHHHHTTTCCCEEEECS-CCCCHHHHHHHHGGGCC-TTSEEEEEETTCTTCCHHHHHHHHHHCCT-
T ss_pred CCCcEEEEeCCCHHHHHHHhhcCCcEEEeCC-CCCCcHHHHHHHHHhcC-CCCeEEEEcCCcceeCHHHHHHHHHHHhc-
Confidence 48999999965 667676666677765443 32233457888887773 36899999999999999999999988754
Q ss_pred CCceEEeecccCCCCccCCCC-ceEEEEcCCCceecccCCCCCCCCCCCCCC--CCCeeEEeeeeeechHHHhh-CcCCC
Q 027992 87 PDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAIYFSRGLIPYNKSGKVNP--QFPYLLHLGIQSYDSNFLKI-YPGLH 162 (215)
Q Consensus 87 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q--~~p~~~~~~~~~~~~~~l~~-~~~~~ 162 (215)
.+..+. ..+.. +|. ..++..+ +|.+..+.+.+ ..++ ......+.+.|+|+.+.+.+ +..+.
T Consensus 124 ~~~~~~--~~~~~-----~~~~~g~v~~~-~g~v~~~~ek~-------~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 188 (456)
T 2v0h_A 124 NGIALL--TVNLD-----NPTGYGRIIRE-NGNVVAIVEQK-------DANAEQLNIKEVNTGVMVSDGASFKKWLARVG 188 (456)
T ss_dssp TSEEEE--EEECS-----SCTTSCEEEEE-TTEEEEEECTT-------TCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCC
T ss_pred CCEEEE--EeecC-----CCCccceEEEc-CCcEEEEEECC-------CCChhHhcCcEEEEEEEEEEHHHHHHHHHHhc
Confidence 343333 23332 122 2233334 56654442211 0111 11245567789998875543 22221
Q ss_pred CCCCCCccch-hhhh-hhhcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHh
Q 027992 163 PTPLQLEEDL-EQLK-VLENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 163 ~~~~~~~e~l-~~~~-~~~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~ 211 (215)
........++ +... +...|.++..++.+ ...++|||++||..|+.++..
T Consensus 189 ~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~ 241 (456)
T 2v0h_A 189 NNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQN 241 (456)
T ss_dssp CCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHH
T ss_pred cccccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHH
Confidence 1110001112 2222 33368888888873 468999999999999998764
No 23
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=99.20 E-value=1.4e-11 Score=94.65 Aligned_cols=74 Identities=23% Similarity=0.282 Sum_probs=51.4
Q ss_pred cccCCCCcEEEEc--CcHHHHHHHHH-c----CCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992 5 CHSFLFCGLVVAT--DDEKIAECCQQ-F----GADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 5 ~~~~~~d~ivV~t--d~~~i~~~~~~-~----g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i 76 (215)
.+++ +++|+|+| +++++.+.+.+ + ++.++..+ . .|+ .++++|+..+ .|.+++++||+||+++++|
T Consensus 38 ~~~~-~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~--~g~~~si~~al~~~---~~~vlv~~~D~P~i~~~~i 110 (196)
T 3rsb_A 38 LKSK-VNNIFIATSPNTPKTKEYINSAYKDYKNIVVIDTS-G--KGYIEDLNECIGYF---SEPFLVVSSDLINLKSKII 110 (196)
T ss_dssp HSSS-CCCEEEECCTTCHHHHHHHHHHTTTTTEEEE-----------CCCCCTTTTTC---SSCEEEEETTEESCCHHHH
T ss_pred HHCC-CCEEEEEeCCChHHHHHHHHhhccCCCCEEEEECC-C--CCcHHHHHHHHHhC---CCCEEEEeCCcccCCHHHH
Confidence 3445 89999999 56778877766 4 33333221 1 222 2466676665 5899999999999999999
Q ss_pred HHHHHHHHc
Q 027992 77 DGVVKALQA 85 (215)
Q Consensus 77 ~~~i~~~~~ 85 (215)
+++++.+.+
T Consensus 111 ~~l~~~~~~ 119 (196)
T 3rsb_A 111 NSIVDYFYC 119 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999964
No 24
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=99.17 E-value=3.6e-10 Score=91.26 Aligned_cols=180 Identities=16% Similarity=0.203 Sum_probs=110.5
Q ss_pred CCCCcEEEEcCc---HHHHHHHH---HcCCeE-EeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992 8 FLFCGLVVATDD---EKIAECCQ---QFGADV-IMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 79 (215)
Q Consensus 8 ~~~d~ivV~td~---~~i~~~~~---~~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~ 79 (215)
..+++|+|+|.. +++.+.+. .+|+.+ +..+.. ..|+ .+++.++..+. .+.++++.||+|+. .++.++
T Consensus 68 ~g~~~iivv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~G~~~al~~a~~~~~--~~~~lv~~~D~~~~--~~l~~l 142 (269)
T 4ecm_A 68 CDITDIMIITGKEHMGDVVSFLGSGQEFGVSFTYRVQDK-AGGIAQALGLCEDFVG--NDRMVVILGDNIFS--DDIRPY 142 (269)
T ss_dssp TTCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSS-CCCHHHHHHTTHHHHT--TSEEEEEETTEEES--SCSHHH
T ss_pred CCCCEEEEECChhhHHHHHHHHhhccccCceEEEeeCCc-cCcHHHHHHHHHHhcC--CCcEEEEeCCccCc--cCHHHH
Confidence 358999999973 55666654 356666 333323 3455 46788887773 58899999999986 789999
Q ss_pred HHHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh
Q 027992 80 VKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI 157 (215)
Q Consensus 80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~ 157 (215)
++.+.+ +.+..++ ..+.. +|..+ .+..+ +|.+..|.+. |. .......+.+.|+|+.+.+..
T Consensus 143 ~~~~~~~~~~~~~~--~~~~~-----~~~~~g~v~~d-~g~v~~~~ek--p~-------~~~~~~~~~Giy~~~~~~l~~ 205 (269)
T 4ecm_A 143 VEEFTNQKEGAKVL--LQSVD-----DPERFGVANIQ-NRKIIEIEEK--PK-------EPKSSYAVTGIYLYDSKVFSY 205 (269)
T ss_dssp HHHHHTSSSSEEEE--EEECS-----CGGGSEEEEEE-TTEEEEEEES--CS-------SCSCSEEEEEEEEECTTHHHH
T ss_pred HHHHHhcCCCeEEE--EEECC-----CCCCceEEEEc-CCEEEEEEEC--CC-------CCCCcEEEEEEEEECHHHHHh
Confidence 999864 3344444 33432 22222 22233 4666555332 10 111246678889998877654
Q ss_pred CcCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992 158 YPGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 158 ~~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~ 212 (215)
+..+..+. ..|. + +..+ +...| ++..++.+...+||+|++||..|+.++...
T Consensus 206 l~~~~~~~--~ge~~l~d~l~~l~~~g-~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~ 260 (269)
T 4ecm_A 206 IKELKPSA--RGELEITDINNWYLKRG-VLTYNEMSGWWTDAGTHVSLQRANALARDI 260 (269)
T ss_dssp HTSCCBCT--TSCBCHHHHHHHHHHTT-CEEEEECCSCEEECSSHHHHHHHHHHTTTC
T ss_pred hhhcCCCC--CCeeeHHHHHHHHHHcC-CEEEEEeCCEEEeCCCHHHHHHHHHHHHhc
Confidence 44332211 1111 1 2233 22345 677777777889999999999999998654
No 25
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=99.08 E-value=1.9e-09 Score=82.51 Aligned_cols=74 Identities=18% Similarity=0.317 Sum_probs=54.8
Q ss_pred CCCcEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 9 LFCGLVVATDD--EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 9 ~~d~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
.+++|+|+|.. +++.+.+..+|+.++..+....|-..+++.|+..+..+.|.++++.||+||+++++|+++++.
T Consensus 45 ~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~ 120 (197)
T 2wee_A 45 GFDQLILTLGGAASAVRAAMALDGTDVVVVEDVERGCAASLRVALARVHPRATGIVLMLGDQPQVAPATLRRIIDV 120 (197)
T ss_dssp TCSEEEEEECTTHHHHHHHSCCTTSEEEECC----CCHHHHHHHHTTSCTTEEEEEEEETTCTTCCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCHHHHHHHhccCCCEEEECCCcccCHHHHHHHHHHHhcccCCeEEEEeCCcCCCCHHHHHHHHhh
Confidence 38899999864 566666666788876554322233457888887763245889999999999999999999988
No 26
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=99.03 E-value=7.7e-09 Score=84.59 Aligned_cols=182 Identities=16% Similarity=0.199 Sum_probs=106.5
Q ss_pred CCCcEEEEc---CcHHHHHHHHH---cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 9 LFCGLVVAT---DDEKIAECCQQ---FGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 9 ~~d~ivV~t---d~~~i~~~~~~---~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
.+++|+|+| +.+.+.+.+.. +|+.+ +.+.+.. .|+. ++..|+..+. .|.++++.||+||.+ ..+.+++
T Consensus 47 gi~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~~-~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l 122 (293)
T 1fxo_A 47 GIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSP-DGLAQAFLIGESFIG--NDLSALVLGDNLYYG-HDFHELL 122 (293)
T ss_dssp TCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSC-CCGGGHHHHTHHHHT--TSEEEEEETTEEEEC-TTHHHHH
T ss_pred CCCEEEEEeccccHHHHHHHHhcccccCceEEEeeCCCC-CCHHHHHHHHHHHhC--CCCEEEEECChhccC-ccHHHHH
Confidence 488998766 34667777765 78775 3333332 4544 6778887773 356666669999998 6899999
Q ss_pred HHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC
Q 027992 81 KALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY 158 (215)
Q Consensus 81 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~ 158 (215)
+.+.+ ..++.+. ..+.. +|... .+..+++|.+..|.+. |. .....+.+.+.|+|+...+...
T Consensus 123 ~~~~~~~~~~~v~--~~~v~-----dp~~~g~v~~d~~g~v~~~~ek--p~-------~~~s~~~~~Giy~~~~~~l~~~ 186 (293)
T 1fxo_A 123 GSASQRQTGASVF--AYHVL-----DPERYGVVEFDQGGKAISLEEK--PL-------EPKSNYAVTGLYFYDQQVVDIA 186 (293)
T ss_dssp HHHHTCCSSEEEE--EEECS-----CGGGSEEEEECTTSCEEEEEES--CS-------SCSSSEEEEEEEEECTTHHHHH
T ss_pred HHHHhcCCCcEEE--EEECC-----CcccCcEEEECCCCcEEEEEEC--CC-------CCCCCeEEEEEEEEcHHHHHHH
Confidence 98853 3344443 23432 23333 2334667776655432 10 0111356788899988766544
Q ss_pred cCCCCCCCCCccchhhhh-hhhcCCeeEEEEec-C-CCCCCCCHHHHHHHHHHHHh
Q 027992 159 PGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVD-H-EAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 159 ~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~-~-~~idIdt~~Dl~~ae~il~~ 211 (215)
..+.++.-...+..+..+ +++.| ++.++... . ..+||+|++||..|+.+++.
T Consensus 187 ~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 241 (293)
T 1fxo_A 187 RDLKPSPRGELEITDVNRAYLERG-QLSVEIMGRGYAWLDTGTHDSLLEAGQFIAT 241 (293)
T ss_dssp HHCCCCTTSSCCHHHHHHHHHHTT-CEEEEECCTTSEEEECCSHHHHHHHHHHHHH
T ss_pred HhcCcccCCceeHHHHHHHHHhcC-CeEEEEeCCCCEEEcCCCHHHHHHHHHHHHH
Confidence 332221100011112233 33345 45555543 3 58999999999999999863
No 27
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=99.02 E-value=2.9e-10 Score=95.91 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=95.9
Q ss_pred ccCCCCcEEEEcCc-HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 6 HSFLFCGLVVATDD-EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 6 ~~~~~d~ivV~td~-~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
++..+++|+|+|++ +.+++.+. ++.++. . -.+-..++++|+..+ ..|.+++++||+||+++++|+++++.+.
T Consensus 43 ~~~~~~~IvVvt~~~~~i~~~~~--~v~~v~-~--g~g~~~sv~~aL~~l--~~d~vlv~~~D~Pli~~~~i~~li~~~~ 115 (371)
T 1w55_A 43 SFYPFKKIVVTSSNITYMKKFTK--NYEFIE-G--GDTRAESLKKALELI--DSEFVMVSDVARVLVSKNLFDRLIENLD 115 (371)
T ss_dssp TTSCCSCEEEEESCHHHHHTTCS--SSEEEE-C--CSSHHHHHHHHHTTC--CSSEEEEEETTCTTCCHHHHHHHHTTGG
T ss_pred ccCCCCeEEEEcCCHHHHHHHhC--CCEEEe-C--CCChHHHHHHHHHhc--CCCeEEEEeCCcccCCHHHHHHHHHHHH
Confidence 44678999999973 33333322 245442 1 112345788898877 3689999999999999999999999886
Q ss_pred cCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCC
Q 027992 85 AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT 164 (215)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~ 164 (215)
++ ++.+++ .+.. ++++.+ ... + .++..+ ....+++|+...+.+......
T Consensus 116 ~~-~a~i~~--~~~~-------d~vk~v-----~~t-------~-~r~~l~-------~~~~P~~f~~~~l~~~~~~~~- 164 (371)
T 1w55_A 116 KA-DCITPA--LKVA-------DTTLFD-----NEA-------L-QREKIK-------LIQTPQISKTKLLKKALDQNL- 164 (371)
T ss_dssp GC-SEEEEE--ECCC-------SCEEET-----TEE-------E-CGGGCC-------EECSCEEEEHHHHHHHTSSCC-
T ss_pred hc-CCEEEE--EEee-------cCeeee-----eee-------c-Ccccee-------ecCCcceecHHHHHHHHHhcc-
Confidence 54 554442 3332 333321 000 0 111111 112346777765544221110
Q ss_pred CCCCccchhhhhhhh-cCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992 165 PLQLEEDLEQLKVLE-NGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 165 ~~~~~e~l~~~~~~~-~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~ 210 (215)
. ..+...+++ .|.++..++.+..++|||||+||..|+ ++.
T Consensus 165 -~----~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae-ll~ 205 (371)
T 1w55_A 165 -E----FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD-LPT 205 (371)
T ss_dssp -C----CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC-CCC
T ss_pred -c----ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH-HhC
Confidence 0 011123333 577888888777899999999999998 663
No 28
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=99.02 E-value=1.4e-08 Score=83.09 Aligned_cols=182 Identities=15% Similarity=0.171 Sum_probs=104.9
Q ss_pred CCCcEEEEc---CcHHHHHHHHH---cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 9 LFCGLVVAT---DDEKIAECCQQ---FGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 9 ~~d~ivV~t---d~~~i~~~~~~---~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
.+++|+|+| +.+.+.+.+.. +|+.+ +...+. ..|+. ++..|+..+. +.+.++++ ||+||.+ ..+.+++
T Consensus 48 gi~~Iivv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~-~~G~~~al~~a~~~i~-~~~~~lv~-gD~~~~~-~~l~~~l 123 (295)
T 1lvw_A 48 GIRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEE-PRGIADAFIVGKDFIG-DSKVALVL-GDNVFYG-HRFSEIL 123 (295)
T ss_dssp TCCEEEEEECTTTHHHHHHHHTTSGGGTSEEEEEECSS-CCCGGGHHHHTHHHHT-TSCEEEEE-TTCCEEC-TTHHHHH
T ss_pred CCCeEEEEeccchHHHHHHHhhhccccCceEEEeeCCC-CCChHHHHHHHHHHhC-CCcEEEEE-CCccccC-cCHHHHH
Confidence 488998876 34667777764 78765 333333 24544 6788887774 33455554 9999998 6899999
Q ss_pred HHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhC
Q 027992 81 KALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY 158 (215)
Q Consensus 81 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~ 158 (215)
+.+.+ ..++.+. ..+.. +|... ++..+++|.+..|.+.+. .++ ..+...+.|+|+...+...
T Consensus 124 ~~~~~~~~~~~v~--~~~v~-----dp~~~g~v~~d~~g~v~~~~ekp~-~~~--------s~~~~~Giy~f~~~~l~~~ 187 (295)
T 1lvw_A 124 RRAASLEDGAVIF--GYYVR-----DPRPFGVVEFDSEGRVISIEEKPS-RPK--------SNYVVPGLYFYDNQVVEIA 187 (295)
T ss_dssp HHHHTCCSSEEEE--EEECS-----CCTTSEEEEECTTSBEEEEEESCS-SCS--------CSEECCSEEEECTTHHHHH
T ss_pred HHHHHcCCCcEEE--EEECC-----CcccCCEEEECCCCcEEEEEECCC-CCC--------CCEEEEEeEEEcHHHHHHH
Confidence 98853 3344433 23432 23322 333466777765543220 011 1355678899988766544
Q ss_pred cCCCCCCCCCccchhhhh-hhhcCCeeEEEEec-C-CCCCCCCHHHHHHHHHHHHh
Q 027992 159 PGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVD-H-EAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 159 ~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~-~-~~idIdt~~Dl~~ae~il~~ 211 (215)
..+.++.-...+..+..+ +++.| ++.++... . ..+||+|++||..|+.+++.
T Consensus 188 ~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (295)
T 1lvw_A 188 RRIEPSDRGELEITSVNEEYLRMG-KLRVELMGRGMAWLDTGTHDGLLEASSFIET 242 (295)
T ss_dssp HHCCCCTTSCCCHHHHHHHHHHTT-CEEEEEECTTCEECCCSSHHHHHHHHHHHHH
T ss_pred HhcCCcccCceeHHHHHHHHHHcC-CcEEEEeCCCCeEEeCCCHHHHHHHHHHHHH
Confidence 332221100011112222 33345 34444443 3 58999999999999999863
No 29
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=99.00 E-value=3.2e-09 Score=86.06 Aligned_cols=185 Identities=8% Similarity=0.059 Sum_probs=110.9
Q ss_pred CCCcEEEEc--CcHHHHHHHHH------------------------cCCeE-EeCCCCCCCch-HHHHHHHHHhcCCCCE
Q 027992 9 LFCGLVVAT--DDEKIAECCQQ------------------------FGADV-IMTSESCRNGT-ERCNEALQKLEKKYDI 60 (215)
Q Consensus 9 ~~d~ivV~t--d~~~i~~~~~~------------------------~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~~~d~ 60 (215)
.+++|+|+| +.+.|.+.+.. +|+.+ +.+... ..|+ .+++.|+..+. .+.
T Consensus 47 gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~Gt~~al~~a~~~l~--~~~ 123 (281)
T 3juk_A 47 GCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQ-MKGLGHAILTGEALIG--NEP 123 (281)
T ss_dssp TCCEEEEEECTTHHHHHHHTSCCC--------CCHHHHHHHHHHHHHHCEEEEEECSS-CCCHHHHHHHTHHHHC--SSC
T ss_pred CCCEEEEEecCCHHHHHHHHhcchhhhhhhhcccchhhhhhhhccccCccEEEEecCC-CCCcHHHHHHHHHHcC--CCC
Confidence 489999999 55677766543 35665 333333 2455 57888888873 367
Q ss_pred EEEecCCCCCCCHH----HHHHHHHHHHcCCCceEEeecccCCCCccCCCCce-EEEEcC--CC--ceecccCCCCCCCC
Q 027992 61 VVNIQGDEPLIEPE----IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDN--HG--YAIYFSRGLIPYNK 131 (215)
Q Consensus 61 v~~~~~d~Pli~~~----~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~--~g--~~~~~~~~~ip~~~ 131 (215)
++++.||. +++++ .++++++.+.+...+.+++...+.. +|... .+..++ +| .+..|.+.+.+
T Consensus 124 ~lv~~~D~-~~~~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~-----~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~--- 194 (281)
T 3juk_A 124 FAVILADD-LCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALE-----EVSKYGVIRGEWLEEGVYEIKDMVEKPNQ--- 194 (281)
T ss_dssp EEEECTTE-EEECTTSCCHHHHHHHHHHHHCSCEEEEEECCTT-----TGGGSEEEEEEEEETTEEEEEEEEESCCT---
T ss_pred EEEEeCCe-eccCccchHHHHHHHHHHHHcCCCEEEEEEechh-----hcccCCEEEeccCCCCceEEeEEEECcCC---
Confidence 99999999 88888 8999999986432355554322211 11222 222333 55 55544332110
Q ss_pred CCCCCCCCCeeEEeeeeeechHHHhhCcCCCCCCCCCccc-h-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHH
Q 027992 132 SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEED-L-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESF 208 (215)
Q Consensus 132 ~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~-l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~i 208 (215)
.+......+.+.|+|+.+.+........+ ...|. + +... .+..| ++..++.+...+||+|++||..|+..
T Consensus 195 ----~~~~~~~~~~GiYi~~~~~l~~l~~~~~~--~~~e~~l~d~i~~l~~~~-~v~~~~~~g~~~dIgt~~d~~~a~~~ 267 (281)
T 3juk_A 195 ----EDAPSNLAVIGRYILTPDIFEILSETKPG--KNNEIQITDALRTQAKRK-RIIAYQFKGKRYDCGSVEGYIEASNA 267 (281)
T ss_dssp ----TTCSCSEEEEEEEEECTTHHHHHHTCCCC--GGGSCCHHHHHHHHHHHS-CCEEEECCSEEEETTSHHHHHHHHHH
T ss_pred ----CCCCcceeEEEEEEECHHHHHHHHhcCCC--CCCceeHHHHHHHHHhcC-CEEEEEeCCeEEcCCCHHHHHHHHHH
Confidence 01112466788899988776544433211 11111 2 2222 22245 78888877788999999999999988
Q ss_pred HHhh
Q 027992 209 MRER 212 (215)
Q Consensus 209 l~~~ 212 (215)
+...
T Consensus 268 l~~~ 271 (281)
T 3juk_A 268 YYKK 271 (281)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8654
No 30
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.99 E-value=2.6e-09 Score=88.47 Aligned_cols=186 Identities=11% Similarity=0.083 Sum_probs=107.0
Q ss_pred CCCCcEEEEcCc--HHHHHHHHH------------------------cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCC
Q 027992 8 FLFCGLVVATDD--EKIAECCQQ------------------------FGADV-IMTSESCRNGTE-RCNEALQKLEKKYD 59 (215)
Q Consensus 8 ~~~d~ivV~td~--~~i~~~~~~------------------------~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d 59 (215)
..+++|+|+|.. +.+.+.+.. .|+.+ +.++... .|+. ++..|+..+..+.|
T Consensus 56 ~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~i~~~~~~~~-~Gt~~al~~a~~~l~~~~d 134 (323)
T 2pa4_A 56 LGATRLAIITAPNKAGVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKP-LGLGHAVGLAESVLDDDED 134 (323)
T ss_dssp TTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHTTCHHHHHHTTHHHHHCEEEEEECSSC-CCHHHHHHTTGGGSCSSCC
T ss_pred CCCCEEEEEecCcHHHHHHHHhccchhhhhhhccchhhhhhhhhccccCcceEEEeCCcc-CCcHHHHHHHHHHhcCCCC
Confidence 358999999965 666654321 35554 3333332 4554 56777766644557
Q ss_pred EEEEecCCCCCCC-HHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEc----CCC--ceecccCCCCCCCCC
Q 027992 60 IVVNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD----NHG--YAIYFSRGLIPYNKS 132 (215)
Q Consensus 60 ~v~~~~~d~Pli~-~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~g--~~~~~~~~~ip~~~~ 132 (215)
.++++.||.|+ + +.+++++++.+.+...+.+++...+.. + .+..-.+..+ ++| .+..|.+.+
T Consensus 135 ~~lv~~~D~~~-~~~~~l~~l~~~~~~~~~~~i~~~~~~~~--~--~~~yg~v~~d~~~~~~~~~~V~~~~Ekp------ 203 (323)
T 2pa4_A 135 VVAVMLPDDLV-LPTGVMERMAQVRAEFGGSVLCAVEVSEA--D--VSKYGIFEIEADTKDSDVKKVKGMVEKP------ 203 (323)
T ss_dssp EEEEECTTEEE-ESSCHHHHHHHHHHTTCSEEEEEEECCGG--G--GGGSEEEEEEECCSSTTEEEEEEEEESC------
T ss_pred eEEEEeCCccc-CchHHHHHHHHHHHhcCCcEEEEEEeccc--c--cCCccEEEeCCcccCCCceeEEEEEECC------
Confidence 79999999999 7 789999999887543333443222110 0 0011112223 343 554443321
Q ss_pred CCCCCCCC--eeEEeeeeeechHHHhhCcCCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHH
Q 027992 133 GKVNPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIES 207 (215)
Q Consensus 133 ~~~~q~~p--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~ 207 (215)
.++.+ ...+.+.|+|....+..+.....+. ..+ ++ +... .++.|.++..++.+...+||||++||..|+.
T Consensus 204 ---~~~~~~~~~~~~GiY~~~~~~~~~l~~~~~~~--~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~ 278 (323)
T 2pa4_A 204 ---AIEDAPSRLAATGRYLLDRKIFDALRRITPGA--GGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACV 278 (323)
T ss_dssp ---CTTTCSCSEEEEEEEEEETHHHHHHHHCCCCG--GGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHH
T ss_pred ---CCccccccEEEEEEEEECHHHHHHHHhhCCCC--CCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHH
Confidence 11122 4567888999887665443322110 011 11 2222 2345778888887767899999999999985
Q ss_pred HHH
Q 027992 208 FMR 210 (215)
Q Consensus 208 il~ 210 (215)
.+.
T Consensus 279 ~~~ 281 (323)
T 2pa4_A 279 DFG 281 (323)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 31
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=98.89 E-value=2.7e-08 Score=77.38 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=56.0
Q ss_pred cEEEEcCc-HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc-CCCc
Q 027992 12 GLVVATDD-EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDA 89 (215)
Q Consensus 12 ~ivV~td~-~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~-~~~~ 89 (215)
+|+|++.+ +.+..+++.+|+.++..+..-.|-..+++.|+..+ .|.+ ++.||+||++++.|+++++.+.. +.+.
T Consensus 40 ~vvvv~~~~~~~~~~~~~~~~~~v~d~~~~~G~~~si~~gl~~~---~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~ 115 (208)
T 3ngw_A 40 QTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIHAALRHF---GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDA 115 (208)
T ss_dssp EEEEECSSHHHHHHHHTTSCSCEECCTTCCCSHHHHHHHHHHHH---SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSE
T ss_pred CEEEEECCHHHHHHHHHhcCCeEEecCCCCCChHHHHHHHHHHc---CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCE
Confidence 88999975 44555666588887754322122345789999887 5789 99999999999999999999864 4454
Q ss_pred eEE
Q 027992 90 VFS 92 (215)
Q Consensus 90 ~i~ 92 (215)
+++
T Consensus 116 v~~ 118 (208)
T 3ngw_A 116 LIP 118 (208)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 32
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=98.86 E-value=1.3e-08 Score=86.46 Aligned_cols=178 Identities=13% Similarity=0.152 Sum_probs=102.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHc--CCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992 9 LFCGLVVATDDEKIAECCQQF--GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 86 (215)
Q Consensus 9 ~~d~ivV~td~~~i~~~~~~~--g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~ 86 (215)
.+++|+|+|..+ +.+.+... ++.++..+. ...|+. +++..... .+.++++.+|+||.++++++++++ .
T Consensus 45 ~~~~i~vv~~~~-i~~~~~~~~~~i~~~~~~~-~~~g~~---~~l~~~~~-~~~~lv~~~D~~~~~~~~~~~l~~----~ 114 (401)
T 2ggo_A 45 GIRDITVIVSSK-NKEYFEKKLKEISIVTQKD-DIKGTG---AAILSAKF-NDEALIIYGDLFFSNEKEICNIIT----L 114 (401)
T ss_dssp TCCEEEEEECGG-GHHHHHHHCTTCEEEECCT-TCCBST---TTGGGCCC-SSEEEEEETTEEESCSHHHHHHTT----C
T ss_pred CCCEEEEEeCHH-HHHHhhccCCcEEEEeCCC-CCCChH---HHHHHhcc-CCCEEEEeCccccccHHHHHHHHH----h
Confidence 489999999877 77776654 566654432 112332 22222211 578999999999999999988876 2
Q ss_pred CCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCCCC
Q 027992 87 PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPL 166 (215)
Q Consensus 87 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (215)
.+..+.+ .+... .....++..+++|.+..+.+.+ .+........+.|+|+...+..+..+.....
T Consensus 115 ~~~~i~~--~~~~~----~~~~~~v~~~~~g~v~~~~ek~---------~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~ 179 (401)
T 2ggo_A 115 KENAIIG--VKVSN----PKDYGVLVLDNQNNLSKIIEKP---------EIPPSNLINAGIYKLNSDIFTYLDKISISER 179 (401)
T ss_dssp SSEEEEE--EECSC----CSSSCEEEECTTSSEEEEECSC---------SSCSCSEEEEEEEEEETHHHHHHHHSCCCSS
T ss_pred cCCEEEE--EEcCC----CcceeEEEECCCCeEEEEEECC---------CCCCCcEEEEEEEEEcHHHHHHhhhcCcCCC
Confidence 3444443 23321 0112123345566655443221 1111246677788998766544332211100
Q ss_pred CCccch-hhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992 167 QLEEDL-EQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 167 ~~~e~l-~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~ 212 (215)
. ..++ +..+.++.|.++..++.+...+||||++||..|+.++..+
T Consensus 180 ~-~~~~~~~~~~~~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~ 225 (401)
T 2ggo_A 180 G-ELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDN 225 (401)
T ss_dssp S-CBCHHHHHHHHHHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHH
T ss_pred C-ceEHHHHHHHHHCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHh
Confidence 0 0111 2222223466788888777889999999999999988653
No 33
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=98.85 E-value=4.6e-08 Score=80.08 Aligned_cols=183 Identities=15% Similarity=0.125 Sum_probs=104.5
Q ss_pred CCCCcEEEEc---CcHHHHHHHHH---cCCeE-EeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHH
Q 027992 8 FLFCGLVVAT---DDEKIAECCQQ---FGADV-IMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGV 79 (215)
Q Consensus 8 ~~~d~ivV~t---d~~~i~~~~~~---~g~~v-~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~ 79 (215)
..+++|+|+| +.+.+.+.+.. +|+.+ +...+. ..|+ .++..|+..+. +.+.+++ .||+||.+ ..+.++
T Consensus 47 ~gi~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~~~-~~G~~~al~~a~~~i~-~~~~~lv-~gD~~~~~-~~l~~~ 122 (296)
T 1mc3_A 47 AGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPS-PDGLAQAFIIGETFLN-GEPSCLV-LGDNIFFG-QGFSPK 122 (296)
T ss_dssp TTCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSS-CCCSTHHHHHTHHHHT-TSCEEEE-ETTEEEEC-SSCHHH
T ss_pred CCCCcEEEEechhHHHHHHHHHhcccccCceEEEeccCC-CCCHHHHHHHHHHHhC-CCCEEEE-ECCccccc-cCHHHH
Confidence 3488998876 34667777654 67765 333323 2444 46788887774 3344444 49999998 688999
Q ss_pred HHHHHc-CCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhh
Q 027992 80 VKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI 157 (215)
Q Consensus 80 i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~ 157 (215)
++.+.+ ..++.+. ..+.. +|..+ .+..+++|.+..|.+.+. .......+.+.|+|+...+..
T Consensus 123 l~~~~~~~~~~~v~--~~~v~-----dp~~yg~v~~d~~g~v~~~~ekp~---------~~~s~~~~~Giy~~~~~~l~~ 186 (296)
T 1mc3_A 123 LRHVAARTEGATVF--GYQVM-----DPERFGVVEFDDNFRAISLEEKPK---------QPKSNWAVTGLYFYDSKVVEY 186 (296)
T ss_dssp HHHHTTCCSSEEEE--EEECS-----CCSSSBBCEEETTEEEEECCBSCS---------SCSCSEEEEEEEECCTHHHHH
T ss_pred HHHHHHcCCCCEEE--EEECC-----CcccCCEEEECCCCcEEEEEECCC---------CCCCCEEEEEEEEEcHHHHHH
Confidence 988853 3344443 23432 23322 222356777665543210 000135678889998877655
Q ss_pred CcCCCCCCCCCccchhhhh-hhhcCCeeEEEEec-C-CCCCCCCHHHHHHHHHHHHh
Q 027992 158 YPGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVD-H-EAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 158 ~~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~-~-~~idIdt~~Dl~~ae~il~~ 211 (215)
...+.++.-...+..+..+ +++.| ++.++..+ . ..+||+|++||..|+.+++.
T Consensus 187 ~~~~~~~~~ge~~~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (296)
T 1mc3_A 187 AKQVKPSERGELEITSINQMYLEAG-NLTVELLGRGFAWLDTGTHDSLIEASTFVQT 242 (296)
T ss_dssp HHSCCCCSSSSCCHHHHHHHHHHTT-CEEEEECCTTCEEEECCSHHHHHHHHHHHHH
T ss_pred HHhcCccccCCccHHHHHHHHHhcC-CeEEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 4443322100011112222 33345 45555553 3 47999999999999998863
No 34
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=98.83 E-value=9.8e-09 Score=79.02 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=49.7
Q ss_pred cEEEEcCc--HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 12 GLVVATDD--EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 12 ~ivV~td~--~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+|+|+|.. +++.+.+. .|+ ++..+....|...+++.|+..+. +.|.++++.||+||++++.|+++++.+
T Consensus 42 ~ivvv~~~~~~~~~~~~~-~~~-~v~~~~~~~G~~~si~~al~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~ 112 (197)
T 3d5n_A 42 EKIIIVGKYVNEMLPLLM-DQI-VIYNPFWNEGISTSLKLGLRFFK-DYDAVLVALGDMPFVTKEDVNKIINTF 112 (197)
T ss_dssp BCCEEECTTHHHHGGGCT-TSC-EEECTTGGGCHHHHHHHHHHHTT-TSSEEEEEETTCCCSCHHHHHHHHHTC
T ss_pred CEEEEECCCHHHHHHHhc-CCE-EEECCCCCCCHHHHHHHHHHhhc-cCCcEEEEeCCccccCHHHHHHHHHHh
Confidence 66777754 45554444 577 65544322344567899998874 348999999999999999999999877
No 35
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=98.80 E-value=1e-07 Score=77.92 Aligned_cols=177 Identities=12% Similarity=0.116 Sum_probs=102.9
Q ss_pred CCCcEEEEcCc--HHHHHHHHH-------------------------cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCC
Q 027992 9 LFCGLVVATDD--EKIAECCQQ-------------------------FGADV-IMTSESCRNGTE-RCNEALQKLEKKYD 59 (215)
Q Consensus 9 ~~d~ivV~td~--~~i~~~~~~-------------------------~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d 59 (215)
.+++|+|+|.. +.|.+.+.. .|+.+ +.++.. ..|+. +++.|+..+. .+
T Consensus 53 gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~-~~Gt~~al~~a~~~~~--~~ 129 (302)
T 2e3d_A 53 GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGL-AKGLGHAVLCAHPVVG--DE 129 (302)
T ss_dssp TCCEEEEEECGGGHHHHHHHSCCHHHHHHHC----CHHHHHHHHTSCTTCEEEEEECSS-CCCHHHHHHHTHHHHC--SS
T ss_pred CCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhccchhhhhhhhhccccCcceEEeeCCc-cCCHHHHHHHHHHHcC--CC
Confidence 58999999975 667666542 35665 334333 34554 6788887773 36
Q ss_pred EEEEecCCCCCCC---HH---HHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEE-Ec----CCC---ceecccCC
Q 027992 60 IVVNIQGDEPLIE---PE---IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VD----NHG---YAIYFSRG 125 (215)
Q Consensus 60 ~v~~~~~d~Pli~---~~---~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~----~~g---~~~~~~~~ 125 (215)
.++++.||.|+-. +. +++++++.+++.....+++ .+.. ++....++ .+ ++| .+..|.+.
T Consensus 130 ~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~~~i~~--~~~~-----~~~~yg~v~~~~~~~~~g~~~~v~~~~ek 202 (302)
T 2e3d_A 130 PVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMV--EPVA-----DVTAYGVVDCKGVELAPGESVPMVGVVEK 202 (302)
T ss_dssp CEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCCEEEEE--EECS-----CGGGSEEEECTTCCCCTTCEEEECEEEES
T ss_pred cEEEEcCCccccCccccchHHHHHHHHHHHHhcCCcEEEE--EEcc-----CCCCccEEEecccccCCCCceeEEEEEEC
Confidence 7999999999832 56 8999999886432333343 2321 11222222 21 345 44433322
Q ss_pred CCCCCCCCCCCCCCC--eeEEeeeeeechHHHhhCcCCCCCCCCCcc-ch-hhhh-hhhcCCeeEEEEecCCCCCCCCHH
Q 027992 126 LIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEE-DL-EQLK-VLENGYKMKVIKVDHEAHGVDAPE 200 (215)
Q Consensus 126 ~ip~~~~~~~~q~~p--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e-~l-~~~~-~~~~g~~v~~~~~~~~~idIdt~~ 200 (215)
| .++.+ ...+.+.|+|+.+++..+....++. ..+ ++ +... .++.| ++..++.+...+||+|++
T Consensus 203 --p-------~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~--~~~~~l~d~i~~l~~~~-~v~~~~~~~~~~DIgt~~ 270 (302)
T 2e3d_A 203 --P-------KADVAPSNLAIVGRYVLSADIWPLLAKTPPGA--GDEIQLTDAIDMLIEKE-TVEAYHMKGKSHDCGNKL 270 (302)
T ss_dssp --C-------CTTTCSCSEEEEEEEEECTTHHHHHTCCCC------CCCHHHHHHHHHHHS-CEEEEECCSCEEECSSHH
T ss_pred --C-------CCCccccceEEEEEEEECHHHHHHHHhhCCCC--CCceehHHHHHHHHHhC-CEEEEEeCCeEEcCCCHH
Confidence 1 11111 4567888999887665544332210 011 11 2222 23346 788888777889999999
Q ss_pred HHHHHHH
Q 027992 201 DVEKIES 207 (215)
Q Consensus 201 Dl~~ae~ 207 (215)
||..|+.
T Consensus 271 d~~~a~~ 277 (302)
T 2e3d_A 271 GYMQAFV 277 (302)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999983
No 36
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=98.71 E-value=1.7e-08 Score=82.96 Aligned_cols=188 Identities=10% Similarity=0.113 Sum_probs=95.6
Q ss_pred CCcEEEEcCc---HHHHHHHHH-cCC-eE-EeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 10 FCGLVVATDD---EKIAECCQQ-FGA-DV-IMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 10 ~d~ivV~td~---~~i~~~~~~-~g~-~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
+++|+|+|.. +.+.+.+.. +|+ .+ +..++. ..|+. ++..++..+. ..+.++++.||.|+++++.+.++++.
T Consensus 51 ~~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~i~~~~-~~gt~~al~~a~~~l~-~~~~~lv~~~D~~~~~~~~~~~~~~~ 128 (308)
T 2qh5_A 51 VDETLIVCNEKHYFLALEEIKNEIKNKSVGFLLESL-SKNTANAIALSALMSD-KEDLLIVTPSDHLIKDLQAYENAIKK 128 (308)
T ss_dssp CSEEEEEEEGGGHHHHHHHTTTTCSSCEEEEEEESS-CCCHHHHHHHHHHTSC-TTSEEEEEESSCBCCCHHHHHHHHHH
T ss_pred CCCEEEEEChhHHHHHHHHHHHhhCCCccEEEeCCC-CCChHHHHHHHHHHhC-CCCeEEEEcCCccccCHHHHHHHHHH
Confidence 8999999965 366777776 676 43 333322 34655 5677777662 34579999999999999999999987
Q ss_pred ---HHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCC----CeeEEeeeeeechHHH
Q 027992 83 ---LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF----PYLLHLGIQSYDSNFL 155 (215)
Q Consensus 83 ---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~----p~~~~~~~~~~~~~~l 155 (215)
+.+. ++.+++...+... ++..-.+..+++|.+..|.+.+.+ ...|+. .+..+.+.|+|+.+.+
T Consensus 129 ~~~~~~~-~~~~t~~~~~~~~----~~~~g~i~~d~~~~V~~~~Ekp~~-----~~~~~~~~~g~~~~n~Giy~~~~~~l 198 (308)
T 2qh5_A 129 AIDLAQK-GFLVTFGVSIDKP----NTEFGYIESPNGLDVKRFIEKPSL-----DKAIEFQKSGGFYFNSGMFVFQAGVF 198 (308)
T ss_dssp HHHHHHT-TCEEEEEEECSSC----CTTSEEEECSSSSBCSEEEESCCH-----HHHHHHHHHCCEEEEEEEEEEEHHHH
T ss_pred HHHHHhc-CCEEEEEEecCCC----CCCceEEEECCCCEEEEEEECCCh-----HHHHHHhhcCCeEEEeEEEEEEHHHH
Confidence 4332 3344443334321 111222222445666555432211 001111 2566788899987653
Q ss_pred -hhCcCCCCCC------------------CCCc----cchhh-------hhhhhcCCeeEEEEecCCCCCCCCHHHHHHH
Q 027992 156 -KIYPGLHPTP------------------LQLE----EDLEQ-------LKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 205 (215)
Q Consensus 156 -~~~~~~~~~~------------------~~~~----e~l~~-------~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~a 205 (215)
..+..+.+.. ++.. +.+.. .++++.|.++.+++.+....||+|++|+..+
T Consensus 199 l~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~ 278 (308)
T 2qh5_A 199 LDELKKHAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEE 278 (308)
T ss_dssp HHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC----------
T ss_pred HHHHHHhChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHH
Confidence 2221111000 0100 00000 0245567889988887788999999999988
Q ss_pred HHHH
Q 027992 206 ESFM 209 (215)
Q Consensus 206 e~il 209 (215)
....
T Consensus 279 ~~~~ 282 (308)
T 2qh5_A 279 AANE 282 (308)
T ss_dssp ----
T ss_pred hhcC
Confidence 7654
No 37
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=98.69 E-value=3.7e-08 Score=80.44 Aligned_cols=182 Identities=8% Similarity=0.061 Sum_probs=96.3
Q ss_pred CCCcEEEEcC--cHHHHHHHHH-----------------------cCCeE-EeCCCCCCCchH-HHHHHHHHhcCCCCEE
Q 027992 9 LFCGLVVATD--DEKIAECCQQ-----------------------FGADV-IMTSESCRNGTE-RCNEALQKLEKKYDIV 61 (215)
Q Consensus 9 ~~d~ivV~td--~~~i~~~~~~-----------------------~g~~v-~~~~~~~~~~~~-~i~~~l~~~~~~~d~v 61 (215)
.+++|+|+|. .+.|.+.+.. .|+.+ +.++.. ..|+. ++..|+..+. .+.+
T Consensus 59 g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~i~~~~~~~-~~Gt~~al~~a~~~~~--~~~~ 135 (297)
T 2ux8_A 59 GIEQMIFVTGRGKSALEDHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVRQQE-PMGLGHAVWCARDIVG--DEPF 135 (297)
T ss_dssp TCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTTTCCGGGGTTSCCSTTSEEEEECCS-CCCHHHHHHTTHHHHC--SSCE
T ss_pred CCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhccchhhhhhhcccCCCceEEEeCCC-CCChHHHHHHHHHHcC--CCcE
Confidence 5899999996 5677766542 34444 333333 24554 6777777773 4789
Q ss_pred EEecCCCCCCC-HHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEE-Ec--CCC--ceecccCCCCCCCCCCCC
Q 027992 62 VNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VD--NHG--YAIYFSRGLIPYNKSGKV 135 (215)
Q Consensus 62 ~~~~~d~Pli~-~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~--~~g--~~~~~~~~~ip~~~~~~~ 135 (215)
+++.||.|+-. +.+++++++.+++...+.+++...+. .++..+.++ .+ ++| .+..|.+.+
T Consensus 136 lv~~~D~~~~~~~~~l~~l~~~~~~~~~~~i~~~~~~~-----~~~~~yg~v~~~~~~~~~~~v~~~~ekp--------- 201 (297)
T 2ux8_A 136 AVLLPDDFMFGQPGCLKQMVDAYNKVGGNLICAEEVPD-----DQTHRYGIITPGTQDGVLTEVKGLVEKP--------- 201 (297)
T ss_dssp EEECTTEEEESSSCHHHHHHHHHHHHCSEEEEEC----------------CCCCCCBCSSEEEC----------------
T ss_pred EEEeCCeecCCChHHHHHHHHHHHhcCCCEEEEEecCc-----ccCCCCCeEEecccCCCceeEEEEEECC---------
Confidence 99999999532 68999999988643233444322211 112222222 12 133 333332211
Q ss_pred CCCCC--eeEEeeeeeechHHHhhCcCCCCC---CCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHH
Q 027992 136 NPQFP--YLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 136 ~q~~p--~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~ 210 (215)
.++.+ ...+.+.|+|+.+++..+.....+ .+...+-+.. .++.| ++..++.+...+||||++||..|+..+.
T Consensus 202 ~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~i~~--l~~~~-~v~~~~~~~~w~dIgt~~dl~~a~~~~~ 278 (297)
T 2ux8_A 202 APGTAPSNLSVIGRYILQPEVMRILENQGKGAGGEIQLTDAMQR--MIGDQ-PFHGVTFQGTRYDCGDKAGFIQANLAVA 278 (297)
T ss_dssp -------CCCEEEEEEECTHHHHHHHHTC--------CCTTGGG--GTTTS-CEEEEECSSEEEETTSHHHHHHHHHHHH
T ss_pred CCCCCCccEEEEEEEEECHHHHHHHHhhCCCCCCeeEHHHHHHH--HHhcC-CEEEEEecceEEeCCCHHHHHHHHHHHH
Confidence 11122 345678899987765443322211 1111111111 22234 7888887767899999999999985554
No 38
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=98.60 E-value=8.6e-08 Score=76.64 Aligned_cols=172 Identities=11% Similarity=0.129 Sum_probs=98.9
Q ss_pred CCCcEEEEcC--cHHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 9 LFCGLVVATD--DEKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 9 ~~d~ivV~td--~~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
.+++|+|+|. .+.+..+++.+|+.++..+.....|+ .++..++..+ + + ++++.||.|+.. +.+++++ +
T Consensus 70 g~~~i~vv~~~~~~~i~~~~~~~~~~iv~~~~~~~~g~~~al~~a~~~~--~-~-~lv~~~D~~~~~-~~~~~~~----~ 140 (254)
T 1jyk_A 70 GINDIIIIVGYLKEQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEEL--A-N-SYVIDADNYLFK-NMFRNDL----T 140 (254)
T ss_dssp TCCCEEEEECTTGGGGTHHHHHHCCEEEECTTTTTSCTHHHHHTTGGGC--T-T-EEEEETTEEESS-CCCCSCC----C
T ss_pred CCCeEEEEeCCcHHHHHHHHHhCCcEEEECCCccCCCcHHHHHHHHHHC--C-C-EEEEeCCcccCH-HHHHHHH----h
Confidence 4889999995 56677777778988765543222344 4666666555 2 4 678999999998 6554432 2
Q ss_pred CCCceEEeecccCCCCccCCC-CceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHH---hhC-cC
Q 027992 86 APDAVFSTAVTSLKPEDAFDP-NRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFL---KIY-PG 160 (215)
Q Consensus 86 ~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l---~~~-~~ 160 (215)
.++++++. .. +| ..+.++.+++|.+..|.+. + -....+.+.|+|+.+.+ .++ ..
T Consensus 141 -~~~~~t~~---~~-----~~~~~~~v~~d~~g~v~~~~e~--~----------~~~~~~~Giy~~~~~~~~~l~~~l~~ 199 (254)
T 1jyk_A 141 -RSTYFSVY---RE-----DCTNEWFLVYGDDYKVQDIIVD--S----------KAGRILSGVSFWDAPTAEKIVSFIDK 199 (254)
T ss_dssp -SEEEEECE---ES-----SCSSCCEEEECTTCBEEEEECC--C----------SSEEBCCSEEEECHHHHHHHHHHHHH
T ss_pred -CCceEEEE---cc-----cCCCCeEEEECCCCeEEEEEEC--C----------CCCcEEEEEEEEcHHHHHHHHHHHHH
Confidence 23444432 11 11 1233345677777655431 1 01345677788865421 111 10
Q ss_pred -CCCCCCCCcc-chhh-hhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHHHhh
Q 027992 161 -LHPTPLQLEE-DLEQ-LKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 161 -~~~~~~~~~e-~l~~-~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il~~~ 212 (215)
...+ ...+ ++++ .+.+..|.++..+..+ ...++|||++||..|+.++++.
T Consensus 200 ~~~~~--~~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~~ 253 (254)
T 1jyk_A 200 AYVSG--EFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKNE 253 (254)
T ss_dssp HHTTT--CCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC--
T ss_pred HHhcC--CccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhhc
Confidence 0101 0111 1222 2323356788888775 6899999999999999998764
No 39
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=98.45 E-value=3.1e-06 Score=72.27 Aligned_cols=190 Identities=14% Similarity=0.127 Sum_probs=106.9
Q ss_pred CCCcEEEEcCc--HHHHHHHHH-cCCe-------E-EeCCC------CCCCch-HHHHHHHHHhcC-CCCEEEEecCCCC
Q 027992 9 LFCGLVVATDD--EKIAECCQQ-FGAD-------V-IMTSE------SCRNGT-ERCNEALQKLEK-KYDIVVNIQGDEP 69 (215)
Q Consensus 9 ~~d~ivV~td~--~~i~~~~~~-~g~~-------v-~~~~~------~~~~~~-~~i~~~l~~~~~-~~d~v~~~~~d~P 69 (215)
.+++|+|+|.. +++.+.+.. +|.. + +..+. .+..|+ .++++++..+.. ..+.++++.||.
T Consensus 58 gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~- 136 (420)
T 3brk_X 58 GIRRIGVATQYKAHSLIRHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDH- 136 (420)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHSCCCCGGGTCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSC-
T ss_pred CCCeEEEEeCCChHHHHHHHhhhhccccccccCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccE-
Confidence 58999999965 778777665 5532 3 22211 111354 467777776632 357899999999
Q ss_pred CCCHHHHHHHHHHHHc-CCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCCC--eeEEe
Q 027992 70 LIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP--YLLHL 145 (215)
Q Consensus 70 li~~~~i~~~i~~~~~-~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p--~~~~~ 145 (215)
+ ...+++++++.+++ +.+..+++...+.. ++.. ..+..+++|.+..|.+.+.+. ..+|+.+ ...+.
T Consensus 137 ~-~~~~l~~l~~~~~~~~~~~tl~~~~~~~~-----~~~~~g~v~~d~~g~v~~~~ekp~~~----~~~~~~~~~~~~~~ 206 (420)
T 3brk_X 137 I-YKMDYEYMLQQHVDSGADVTIGCLEVPRM-----EATGFGVMHVNEKDEIIDFIEKPADP----PGIPGNEGFALASM 206 (420)
T ss_dssp E-ECBCTHHHHHHHHHTTCSEEEEEEEEETT-----GGGGSEEEEECTTSBEEEEEESCSSC----CCBTTBTTEEEEEE
T ss_pred E-EchHHHHHHHHHHHcCCeEEEEEeecCcc-----ccCcccEEEECCCCcEEEeEeCCCcc----ccccccccceEEee
Confidence 4 45679999998864 33433433222111 1112 223346677776664432110 1223333 45677
Q ss_pred eeeeechHHHhhC-cCCCCCCCCCccch--hhh-hhhhcCCeeEEEEe-----------cCCCCCCCCHHHHHHHHHHHH
Q 027992 146 GIQSYDSNFLKIY-PGLHPTPLQLEEDL--EQL-KVLENGYKMKVIKV-----------DHEAHGVDAPEDVEKIESFMR 210 (215)
Q Consensus 146 ~~~~~~~~~l~~~-~~~~~~~~~~~e~l--~~~-~~~~~g~~v~~~~~-----------~~~~idIdt~~Dl~~ae~il~ 210 (215)
+.|+|+.+.+.++ ....... ...+++ +.. .+++.| ++..+.. +...+||+|++||..|+..+.
T Consensus 207 Giy~~~~~~l~~~l~~~~~~~-~~~~~~~~d~l~~li~~g-~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll 284 (420)
T 3brk_X 207 GIYVFHTKFLMEAVRRDAADP-TSSRDFGKDIIPYIVEHG-KAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLT 284 (420)
T ss_dssp EEEEEEHHHHHHHHTSSCCC-----------CTTHHHHHS-CEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTT
T ss_pred eeEEEeHHHHHHHHHHhcccC-CccccchHHHHHHHhhhC-cEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHh
Confidence 8899988766432 2221110 001111 111 233345 7877776 567899999999999988765
Q ss_pred h
Q 027992 211 E 211 (215)
Q Consensus 211 ~ 211 (215)
.
T Consensus 285 ~ 285 (420)
T 3brk_X 285 D 285 (420)
T ss_dssp S
T ss_pred C
Confidence 3
No 40
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=98.40 E-value=4.3e-06 Score=66.44 Aligned_cols=176 Identities=12% Similarity=0.118 Sum_probs=102.5
Q ss_pred CCCcEEEEc--CcHHHHHHHHHc-----CCeE--------EeCCC-----------CCCCchH-HHHHHHHHhcCCCCEE
Q 027992 9 LFCGLVVAT--DDEKIAECCQQF-----GADV--------IMTSE-----------SCRNGTE-RCNEALQKLEKKYDIV 61 (215)
Q Consensus 9 ~~d~ivV~t--d~~~i~~~~~~~-----g~~v--------~~~~~-----------~~~~~~~-~i~~~l~~~~~~~d~v 61 (215)
.+++|+|+| +.+.+.+.+.++ ++.+ +.++. ....|+. +++.|+..+. ..+.+
T Consensus 47 g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~-~~~~~ 125 (259)
T 1tzf_A 47 GIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK-DDEAF 125 (259)
T ss_dssp TCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT-TSSCE
T ss_pred CCCEEEEEcccCHHHHHHHHhhcccccccccccccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC-CCCcE
Confidence 489999999 567787777653 3332 22211 1123554 5677766663 34678
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCce-EEEEcCCCceecccCCCCCCCCCCCCCCCCC
Q 027992 62 VNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP 140 (215)
Q Consensus 62 ~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p 140 (215)
+++.||. + .+.++.++++.+.+. ++.+++...+ +|... ++..+ +|.+..|.+.+. .. .
T Consensus 126 lv~~~D~-~-~~~~~~~~~~~~~~~-~~~~t~~~~~-------~~~~~g~v~~~-~g~v~~~~ekp~--------~~--~ 184 (259)
T 1tzf_A 126 LFTYGDG-V-ADLDIKATIDFHKAH-GKKATLTATF-------PPGRFGALDIQ-AGQVRSFQEKPK--------GD--G 184 (259)
T ss_dssp EEEETTE-E-ECCCHHHHHHHHHHH-CCSEEEEEEC-------CCCCSEEEEEE-TTEEEEEEESCS--------CC--S
T ss_pred EEEECCE-e-cccCHHHHHHHHHHh-CCeEEEEEec-------CCCCccEEEEc-CCEEEEEEecCC--------CC--C
Confidence 8899998 3 467899999988642 2233332221 11222 23334 677665543211 00 1
Q ss_pred eeEEeeeeeechHHHhhCcCCCCCCCCCccchhhhh-hhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHhh
Q 027992 141 YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~l~~~~-~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~~ 212 (215)
...+.+.|+|+.+.+..+.. .... .+ .+... .++.| ++..++.+....||||++|+..|+.++...
T Consensus 185 ~~~~~Giy~~~~~~l~~l~~---~~~~-~~-~~~i~~~~~~~-~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~ 251 (259)
T 1tzf_A 185 AMINGGFFVLNPSVIDLIDN---DATT-WE-QEPLMTLAQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWEKG 251 (259)
T ss_dssp CCEECCCEEECGGGGGGCCS---TTCC-TT-THHHHHHHHTT-CEEEEEECSCEEECCSHHHHHHHHHHHHTT
T ss_pred ceEEEEEEEeCHHHHHhhcc---cccc-cH-HHHHHHHHHcC-CEEEEEeCcEEEeCCCHHHHHHHHHHHhcC
Confidence 45677889998877644321 1100 10 11122 23345 677777777889999999999999988753
No 41
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=98.37 E-value=1.4e-05 Score=69.73 Aligned_cols=193 Identities=19% Similarity=0.247 Sum_probs=117.9
Q ss_pred ccCCCCcEEEEcC--cHHHHHHH----HHcCCe--EEeCCCCCCCchH-HHHHHHHHhcC-CCCEEEEecCCCCCCCHHH
Q 027992 6 HSFLFCGLVVATD--DEKIAECC----QQFGAD--VIMTSESCRNGTE-RCNEALQKLEK-KYDIVVNIQGDEPLIEPEI 75 (215)
Q Consensus 6 ~~~~~d~ivV~td--~~~i~~~~----~~~g~~--v~~~~~~~~~~~~-~i~~~l~~~~~-~~d~v~~~~~d~Pli~~~~ 75 (215)
....+++|+|++. .+.+.+.. ..+|.. ++..... -|++ +++.++..+.. ..+.++++.+|.||++.+.
T Consensus 51 ~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~q~~~--lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~ 128 (501)
T 3st8_A 51 AKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRP--LGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADT 128 (501)
T ss_dssp HHHCCSEEEEEECTTHHHHHHHHHHHHHHHTSCCEEEECSSC--CCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHH
T ss_pred HhCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEEEEEcCCC--CCcHHHHHHHHHHhccccccceeeecCcceeecHHH
Confidence 3446899999994 46666554 345554 4444434 3565 67788877753 3578999999999999999
Q ss_pred HHHHHHHHHcCCCceEEeecccCCCCccCCCCc-eEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHH
Q 027992 76 IDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNF 154 (215)
Q Consensus 76 i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~ 154 (215)
+.++++..+.. ++.+++...+.. +|.. -++..+++|.+..+-+.+ +....|......+.+.|+|....
T Consensus 129 ~~~l~~~h~~~-~~~~ti~~~~~~-----dp~~yG~i~~~~~g~v~~ivEk~-----~~~~~~~~i~~in~Giy~f~~~~ 197 (501)
T 3st8_A 129 LADLIATHRAV-SAAVTVLTTTLD-----DPFGYGRILRTQDHEVMAIVEQT-----DATPSQREIREVNAGVYAFDIAA 197 (501)
T ss_dssp HHHHHHHHHHT-TCSEEEEEEECS-----CCTTSCEEEECTTCCEEEEECGG-----GCCHHHHHCCEEEEEEEEEEHHH
T ss_pred HHHHHHHHhhc-cccceEeeeccC-----CchhccccccccceeEEeecccc-----CCChhhccceeeeceeeeecchh
Confidence 99999998753 333443334442 3333 244557777765442211 10011111145678889998877
Q ss_pred HhhC-cCCCCCCCCCccc-hh-hhhhh-hcCCeeEEEEec--CCCCCCCCHHHHHHHHHHHHhh
Q 027992 155 LKIY-PGLHPTPLQLEED-LE-QLKVL-ENGYKMKVIKVD--HEAHGVDAPEDVEKIESFMRER 212 (215)
Q Consensus 155 l~~~-~~~~~~~~~~~e~-l~-~~~~~-~~g~~v~~~~~~--~~~idIdt~~Dl~~ae~il~~~ 212 (215)
|..+ ..+... ..+.|+ +. ...++ ..|..+..+..+ .....+++..++..++..+..+
T Consensus 198 l~~~l~~l~~~-n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r 260 (501)
T 3st8_A 198 LRSALSRLSSN-NAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRR 260 (501)
T ss_dssp HHHHHTTCCCC-STTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred HHHhhhhhccc-ccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhh
Confidence 6654 232222 223333 43 22332 368888777764 5778899999999888877543
No 42
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=98.37 E-value=1.5e-05 Score=65.17 Aligned_cols=198 Identities=11% Similarity=0.092 Sum_probs=107.9
Q ss_pred CCCCcEEEEcCc---HHHHHHHHH---cCCe--EEeCCCC-------------CCCchH-HHHHHHHHhcCCCCEEEEec
Q 027992 8 FLFCGLVVATDD---EKIAECCQQ---FGAD--VIMTSES-------------CRNGTE-RCNEALQKLEKKYDIVVNIQ 65 (215)
Q Consensus 8 ~~~d~ivV~td~---~~i~~~~~~---~g~~--v~~~~~~-------------~~~~~~-~i~~~l~~~~~~~d~v~~~~ 65 (215)
..+++|+|+|.. +.+.+.... .+.. .+..+.. ...|+. ++..+...+ + +-++++.
T Consensus 46 ~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i--~-~~~lV~~ 122 (303)
T 3pnn_A 46 AGFGRLVFVIRHSFEKEFREKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI--R-EPFAVIN 122 (303)
T ss_dssp HTCCEEEEEECGGGHHHHHHHTHHHHTTTSCEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC--C-SCEEEEE
T ss_pred CCCCeEEEEcCchHHHHHHHHHHHHhccCCcEEEEecccccccccccccccccccCCcHHHHHHHHHhc--C-CCEEEEE
Confidence 358999999964 345544432 2333 3333210 123553 566665555 2 4577889
Q ss_pred CCCCCCCHHHHHHHHHHHHcC--CCceEEeecccCCCCccCCCCc---eEEEEcCCCceecccCCCCCCCCCC------C
Q 027992 66 GDEPLIEPEIIDGVVKALQAA--PDAVFSTAVTSLKPEDAFDPNR---VKCVVDNHGYAIYFSRGLIPYNKSG------K 134 (215)
Q Consensus 66 ~d~Pli~~~~i~~~i~~~~~~--~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~ip~~~~~------~ 134 (215)
||. +++.+.++++++.+.++ .++.+++...+... +...... ..+..+++|.+..|.+.+.....+. .
T Consensus 123 gD~-l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~ 200 (303)
T 3pnn_A 123 ADD-FYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGN-TLSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDE 200 (303)
T ss_dssp SSC-BCCHHHHHHHHHHHHTTTTCSSEEEEEEEEGGG-SCBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECT
T ss_pred CCe-ecCHHHHHHHHHHHHHhccccCceEEEEEECCC-ccCccCceeeeeEeeCCCCcEEEEEECCCCcccccccccccc
Confidence 999 78898999999988641 23444443333321 0000011 1334466787765543321000000 0
Q ss_pred CCC----CCCeeEEeeeeeechHHHhhCcC--------CCCCCCCCccc-h-hhhh-hhhcCC-eeEEEEecCCCCCCCC
Q 027992 135 VNP----QFPYLLHLGIQSYDSNFLKIYPG--------LHPTPLQLEED-L-EQLK-VLENGY-KMKVIKVDHEAHGVDA 198 (215)
Q Consensus 135 ~~q----~~p~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~e~-l-~~~~-~~~~g~-~v~~~~~~~~~idIdt 198 (215)
..+ ......+.+.|+|+.+.+..... ...+ ...|. + +... .+..|. ++..++.+...+||+|
T Consensus 201 ~g~~~~~~~~~~i~~GiY~f~~~~~~~l~~~~~~~l~~~~~~--~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt 278 (303)
T 3pnn_A 201 TGKICTLAEDAPVSMNMWGFTPDYFDYSEELFINFLNAHGQE--PKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTY 278 (303)
T ss_dssp TSCEEEECTTCEEEEEEEEECTHHHHHHHHHHHHHHHHHTTC--SSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSS
T ss_pred ccccccCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHhcCCC--cCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCC
Confidence 000 01246678889998766543321 1111 11222 2 2223 334576 8999888888999999
Q ss_pred HHHHHHHHHHHHhh
Q 027992 199 PEDVEKIESFMRER 212 (215)
Q Consensus 199 ~~Dl~~ae~il~~~ 212 (215)
++|+..|++.++..
T Consensus 279 ~~dl~~a~~~l~~~ 292 (303)
T 3pnn_A 279 SDDRPGVVAKLREL 292 (303)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
No 43
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=98.34 E-value=1e-06 Score=68.36 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=48.7
Q ss_pred CCCcE-EEEcCcHHHHHHHHHcCCeEEeCCCCCCCch-HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 9 LFCGL-VVATDDEKIAECCQQFGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 9 ~~d~i-vV~td~~~i~~~~~~~g~~v~~~~~~~~~~~-~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
.++.| +|+|+++++.+. +|+.++..+ +|+ +++.+++..+ .+.++++.+|+|++++++|+++++
T Consensus 47 ~~~~v~vvv~~~~~~~~~---~~~~~v~~~----~gl~~sl~~a~~~~---~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 47 GIEQVDILSPSVYGLEEM---TEARVLLDE----KDLNEALNRYLKEA---EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp TCSEEEEEESSCTTCSSC---CSSEEEECC----SCHHHHHHHHHHHC---CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred CCceEEEEEcCcHHHHhh---cCCEEEECC----CCHHHHHHHHHHhc---CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 47889 999976554322 588876654 455 4788888775 478999999999999999999887
No 44
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=98.29 E-value=3.8e-06 Score=66.02 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=44.3
Q ss_pred cEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 12 GLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 12 ~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
+|+|++..+++.+.+ |+.+ + ...|...++..|+..+. |.++++.||+||+++++++++++ +.
T Consensus 48 ~ivvv~~~~~i~~~~---~~~~---~-~~~g~~~~i~~a~~~~~---~~~lv~~~D~P~~~~~~i~~l~~-~~ 109 (232)
T 2dpw_A 48 SPVYVGENPGLVPAP---ALTL---P-DRGGLLENLEQALEHVE---GRVLVATGDIPHLTEEAVRFVLD-KA 109 (232)
T ss_dssp EEEEESCCSSCSSCC---SEEE---C-CCSSHHHHHHHHHHTCC---SEEEEEETTCTTCCHHHHHHHHH-HC
T ss_pred EEEEEeChHHHhhhc---CeEe---c-CCCCHHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHh-cC
Confidence 888888764443322 4443 2 22233457888888773 89999999999999999999999 53
No 45
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=98.09 E-value=1.7e-05 Score=65.91 Aligned_cols=186 Identities=15% Similarity=0.180 Sum_probs=99.1
Q ss_pred cCCCCcEEEEcCcHH---HHHHHHHcC-CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 7 SFLFCGLVVATDDEK---IAECCQQFG-ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 7 ~~~~d~ivV~td~~~---i~~~~~~~g-~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
+..+++|+|+|+.+. +.+.+...+ ..++..+.. .|++ .+..+...+ ...+.++++.||.|+..++.+.++++
T Consensus 47 ~~~~~~iivvt~~~~~~~i~~~l~~~~~~~ii~e~~~--~gta~ai~~a~~~~-~~~~~~lvl~~D~~~~~~~~~~~~l~ 123 (336)
T 2x65_A 47 EMDPKDVIVVTHKDYVERTKKELPELPDENIIAEPMK--KNTAPACFIGTKLA-DDDEPVLVLPADHRIPDTKKFWKTVK 123 (336)
T ss_dssp TCCGGGEEEEEEGGGHHHHHHHCTTSCGGGEEEESSC--CCHHHHHHHHHTTS-CTTCEEEEEETTCBCCCHHHHHHHHH
T ss_pred cCCCCcEEEEcChHHHHHHHHHhhccccceEEeCCCC--CCcHHHHHHHHHhh-CCCCEEEEEcCCceeccHHHHHHHHH
Confidence 346889999997653 333333322 245555533 4555 456565544 23578999999999999998877776
Q ss_pred HH----HcCCCceEEeecccCCCCccCCCCceEEEEcCC-----CceecccCCCCCCCCCCCCCCC-C---CeeEEeeee
Q 027992 82 AL----QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH-----GYAIYFSRGLIPYNKSGKVNPQ-F---PYLLHLGIQ 148 (215)
Q Consensus 82 ~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~ip~~~~~~~~q~-~---p~~~~~~~~ 148 (215)
.+ ++. +.++++...+..++ ...-++..+++ +.+..|.+.+.. ...|. + .+..+.+.|
T Consensus 124 ~~~~~~~~~-~~~vt~~i~p~~~~----~~yG~I~~~~~~~~~~~~V~~f~EKp~~-----~~a~~~~~~g~y~~n~Giy 193 (336)
T 2x65_A 124 KALDALEKY-DGLFTFGIVPTRPE----TGYGYIEIGEELEEGVHKVAQFREKPDL-----ETAKKFVESGRFLWNSGMF 193 (336)
T ss_dssp HHHHHHHHH-CSEEEEEECCCSCC----SSSEEEEEEEEEETTEEEEEEEEESCCH-----HHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHhc-CCeEEEEeecccCC----CCceEEEECCccCCCccEEEEEEECCCh-----HHHHHHHhcCCeEEEeeeE
Confidence 64 331 34444433333210 01112222222 344444332210 00110 0 156678889
Q ss_pred eechHHH-hhCcCCCCCCCC-------Cccc-----hhhh-------hhhhcCCeeEEEEecCCCCCCCCHHHHHHH
Q 027992 149 SYDSNFL-KIYPGLHPTPLQ-------LEED-----LEQL-------KVLENGYKMKVIKVDHEAHGVDAPEDVEKI 205 (215)
Q Consensus 149 ~~~~~~l-~~~~~~~~~~~~-------~~e~-----l~~~-------~~~~~g~~v~~~~~~~~~idIdt~~Dl~~a 205 (215)
+|+.+.+ ..+..+.+..++ ..|. +... .+++.+.++.+++.+....||+|++|+..+
T Consensus 194 ~~~~~~ll~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 194 LWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp EEEHHHHHHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred EEEHHHHHHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 9987654 222211111000 0000 0110 244567789888888888999999999877
No 46
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=98.00 E-value=2.5e-05 Score=60.00 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=51.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCC-CCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 9 LFCGLVVATDDEKIAECCQQFGADVIMTSESC-RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 9 ~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~-~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
.+++|+|+|+.+. ..+ .++|+.++..+..- .|...+++.|+..+ ..|.++++.||+||++++.|+++++.
T Consensus 46 ~~~~ivvv~~~~~-~~~-~~~~~~~v~~~~~~~~G~~~si~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 46 QLSHVVVNANRHQ-EIY-QASGLKVIEDSLADYPGPLAGMLSVMQQE--AGEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp HCSCEEEECSSSH-HHH-HTTSCCEECCCTTCCCSHHHHHHHHHHHC--CSSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred hCCEEEEEcCCcH-HHH-hhcCCeEEecCCCCCCCHHHHHHHHHHhC--CCCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 4789999997654 222 45788776443221 23345788999887 46899999999999999999999886
No 47
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=97.99 E-value=1.7e-05 Score=65.93 Aligned_cols=189 Identities=11% Similarity=0.069 Sum_probs=102.6
Q ss_pred ccCCCCcEEEEcCcHHHHHHHHHcC-CeEEeCCCCCCCchH-HHHHHHHHhc--CCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 6 HSFLFCGLVVATDDEKIAECCQQFG-ADVIMTSESCRNGTE-RCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 6 ~~~~~d~ivV~td~~~i~~~~~~~g-~~v~~~~~~~~~~~~-~i~~~l~~~~--~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
.+..+++|+|+|+.+....+.++++ ..++..+. ..|++ .+..+.. +. ...+.++++.||.|+.+++.+..+++
T Consensus 47 ~~~~~~~iiVvt~~~~~~~i~~~l~~~~~i~e~~--~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~ 123 (337)
T 2cu2_A 47 PLVPPERTLLAVRRDQEAVARPYADGIRLLLEPL--GRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALA 123 (337)
T ss_dssp TTSCGGGEEEEEEGGGHHHHGGGCSSSEEEEESS--CCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHH
T ss_pred CcCCCCCEEEEcChHHHHHHHHHhccCceEecCC--CCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHH
Confidence 3336789999998765444445544 23333443 24665 3554444 31 13578999999999999999998888
Q ss_pred HHH--cCCCceEEeecccCCCCccCCCCceEEEEcCC----CceecccCCCCCCCCCCCCCCCC---CeeEEeeeeeech
Q 027992 82 ALQ--AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH----GYAIYFSRGLIPYNKSGKVNPQF---PYLLHLGIQSYDS 152 (215)
Q Consensus 82 ~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~ip~~~~~~~~q~~---p~~~~~~~~~~~~ 152 (215)
.+. ...+.++++...+..++. ..-++..+++ +.+..|.+.+.. ...|+. .+..+.+.|+|+.
T Consensus 124 ~~~~~~~~~~~vt~~i~p~~~~t----~yG~I~~~~~~~~~~~V~~f~EKp~~-----~~a~~~~~~g~~~n~Giy~f~~ 194 (337)
T 2cu2_A 124 TMLEAAEEGFVVALGLRPTRPET----EYGYIRLGPREGAWYRGEGFVEKPSY-----AEALEYIRKGYVWNGGVFAFAP 194 (337)
T ss_dssp HHHHHCCTTCEEEEEECCSSCCS----SSCEEEEEEEETTEEEEEEEECCCCH-----HHHHHHHHTTCEEEEEEEEECH
T ss_pred HHHHHHHcCCeEEEeeccCCCCC----CceEEEECCcccccCeEEEEEeCCCh-----HHHHHHhhcCCEEEEEEEEEeH
Confidence 763 112455554433432110 1112222322 445444332110 001110 1466788899987
Q ss_pred HHH-hhCcCCCCCCCCCc----------cchhhh-------hhhhcCCeeEEEEecCCCCCCCCHHHHHHHH
Q 027992 153 NFL-KIYPGLHPTPLQLE----------EDLEQL-------KVLENGYKMKVIKVDHEAHGVDAPEDVEKIE 206 (215)
Q Consensus 153 ~~l-~~~~~~~~~~~~~~----------e~l~~~-------~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae 206 (215)
+.+ ..+..+.+...+.. +.+... .+++.|.++.+++.+....||+|++|+..+.
T Consensus 195 ~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~ 266 (337)
T 2cu2_A 195 ATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (337)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence 654 33322111100000 001111 2455678898888888889999999997763
No 48
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=97.96 E-value=6.4e-06 Score=64.54 Aligned_cols=169 Identities=17% Similarity=0.196 Sum_probs=79.8
Q ss_pred CCcEEEEc-CcHHHHHH-HHHcCCeE-EeCCCCCCCc-hHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 10 FCGLVVAT-DDEKIAEC-CQQFGADV-IMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 10 ~d~ivV~t-d~~~i~~~-~~~~g~~v-~~~~~~~~~~-~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
+++|+|+| +.+++.+. ++++|..+ +........| ..+++.|+..+. +.++++.||.|+ +++.++++++.
T Consensus 59 ~~~i~vv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~i~~a~~~~~---~~~lv~~~D~p~-~~~~~~~l~~~--- 131 (232)
T 2xme_A 59 VSEFIIVASRYADDIDAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVE---DRFILTMGDHVY-SQQFIEKAVRG--- 131 (232)
T ss_dssp EEEEEEEESTTHHHHHHHHTTSCCCEEEEECSCGGGCHHHHHHTTGGGCC---SSEEEEETTEEE-CHHHHHHHTTC---
T ss_pred CCEEEEEeCChHHHHHHHHHhcCCcEEEEECCCCCCCcHHHHHHHHHHCC---CCEEEEcCCccc-CHHHHHHHHhC---
Confidence 78999998 44566554 55566433 2232232223 456778877763 346778999998 99988876652
Q ss_pred CCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCCCCCCCCCeeEEeeeeeechHHHhhCcCCCCCC
Q 027992 86 APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTP 165 (215)
Q Consensus 86 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (215)
.+ . .+.... ...+ ..+..++..+ +|.+..+.+.. + + ....+.+.|+|....+..........
T Consensus 132 -~~-~-~~~~~~-~~~~--~~~~~~v~~~-~g~v~~~~~~~-~-------~---~~~~~~g~~~~~~~~~~~l~~~~~~g 193 (232)
T 2xme_A 132 -EG-V-IADREP-RFVD--IGEATKIRVE-DGRVAKIGKDL-R-------E---FDCVDTGFFVLDDSIFEHAEKLRDRE 193 (232)
T ss_dssp -CE-E-EEESSC-SSSC--TTTSCEEEEE-TTEEEEEETTC-S-------S---CSEEEEEEEEECTTHHHHHGGGTTSS
T ss_pred -CC-c-EEEccc-cccC--CCcceEEEEc-CCEEEEeecCC-C-------C---cceEEEEEEEECHHHHHHHHHHHhcC
Confidence 12 1 111111 0000 0133344333 56554443321 1 0 02335666888776554332211110
Q ss_pred CCCccchhhhhhhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHHH
Q 027992 166 LQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESFM 209 (215)
Q Consensus 166 ~~~~e~l~~~~~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~il 209 (215)
...+. .+++.+ .+..+..+ ...+|||||+||..|+.++
T Consensus 194 ---~~~l~--~ll~~~-~v~~~~~~~~~~~dI~tpeDl~~a~~~l 232 (232)
T 2xme_A 194 ---EIPLS--EIVKLA-RLPVTYVDGELWMDVDTKEDVRRANRAL 232 (232)
T ss_dssp ---CCCHH--HHHHHH-TCBEEECCSCCEEEEECC----------
T ss_pred ---hhHHH--HHHHcC-CEEEEEECCCCEEeCCCHHHHHHHHhhC
Confidence 11121 233333 34455543 5679999999999998764
No 49
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=97.96 E-value=0.00013 Score=62.74 Aligned_cols=198 Identities=13% Similarity=0.131 Sum_probs=107.6
Q ss_pred CCCCcEEEEcCc--HHHHHHHHH-cC--C---------eEEe---CC--CCCCCch-HHHHHHHHHhcC-CCCEEEEecC
Q 027992 8 FLFCGLVVATDD--EKIAECCQQ-FG--A---------DVIM---TS--ESCRNGT-ERCNEALQKLEK-KYDIVVNIQG 66 (215)
Q Consensus 8 ~~~d~ivV~td~--~~i~~~~~~-~g--~---------~v~~---~~--~~~~~~~-~~i~~~l~~~~~-~~d~v~~~~~ 66 (215)
..+++|+|+|.. +.+.+.+.+ +| . .++. .+ +++..|+ .+++.++..+.. ..+.++++.|
T Consensus 65 ~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~ 144 (451)
T 1yp2_A 65 SNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAG 144 (451)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCC--------CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECS
T ss_pred CCCCEEEEEeccCHHHHHHHHhhhhhcccccccccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecC
Confidence 358999999954 566655543 32 2 2321 11 1223455 467888877742 3588999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCCceecccCCCCCCCCCC--CC----C----
Q 027992 67 DEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG--KV----N---- 136 (215)
Q Consensus 67 d~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ip~~~~~--~~----~---- 136 (215)
|. +. ..++.++++.+++. ++.+++...+....+.. ..-.+..+++|.+..|.+.+.+..... .. .
T Consensus 145 D~-~~-~~~l~~l~~~~~~~-~~~~tl~~~~~~~~~~~--~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~ 219 (451)
T 1yp2_A 145 DH-LY-RMDYEKFIQAHRET-DADITVAALPMDEKRAT--AFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDK 219 (451)
T ss_dssp CE-EC-CCCHHHHHHHHHHT-TCSEEEEEEEECHHHHT--TSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHH
T ss_pred cE-EE-cCCHHHHHHHHHHc-CCcEEEEEEEcChhhcc--cCCEEEECCCCCEEEEEECCCchhhccccccccccccccc
Confidence 99 54 45799999988643 33333322222100000 111233466677766644321100000 00 0
Q ss_pred --CCCCeeEEeeeeeechHHHhhC-cCCCCCCCCCccchhhhhhhhcCCeeEEEEecCCCCCCCCHHHHHHHHHHHHh
Q 027992 137 --PQFPYLLHLGIQSYDSNFLKIY-PGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE 211 (215)
Q Consensus 137 --q~~p~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~e~l~~~~~~~~g~~v~~~~~~~~~idIdt~~Dl~~ae~il~~ 211 (215)
+......+.+.|+|+.+.+..+ ....+...+..+.+ ....+..|.++..++.+....||+|++|+..|+..+..
T Consensus 220 ~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~-l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~ 296 (451)
T 1yp2_A 220 RAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEV-IPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 296 (451)
T ss_dssp HHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTH-HHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGC
T ss_pred cccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhH-HHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhc
Confidence 0012456888899988766432 22211111222221 01233457889888877788999999999999877654
No 50
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=97.77 E-value=0.00022 Score=56.77 Aligned_cols=175 Identities=11% Similarity=0.128 Sum_probs=96.0
Q ss_pred CCCCcEEEEcCc--H---HHHHHHHHcCC---eEEeCCCCCCCchH-HHHHHHHHhc----CCCCEEEEecCCCCCCCHH
Q 027992 8 FLFCGLVVATDD--E---KIAECCQQFGA---DVIMTSESCRNGTE-RCNEALQKLE----KKYDIVVNIQGDEPLIEPE 74 (215)
Q Consensus 8 ~~~d~ivV~td~--~---~i~~~~~~~g~---~v~~~~~~~~~~~~-~i~~~l~~~~----~~~d~v~~~~~d~Pli~~~ 74 (215)
..+++|+|++.. + .+.+.++++|. .++..+.. ..|+. +++.|+..+. ...+.++++.||. +++..
T Consensus 44 ~gi~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~-l~~~~ 121 (255)
T 4evw_A 44 FASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELHTE-TRGQAETVTLGLEELAKQGVDYQGSITVFNIDT-FRPNF 121 (255)
T ss_dssp TTTSCEEEEEESSTTHHHHHHHHHHHHTCSSEEEEEESSC-CSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTE-ECTTC
T ss_pred CCCceEEEEECchhhhHHHHHHHHHHcCCCCceEEEeCCC-CCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCE-EEecc
Confidence 468898888732 2 34444555553 23333322 34554 7888888772 2345689999998 77544
Q ss_pred HHHHHHHHHHcCCCceEEeecccCCCCccCCCCceEEEEcCCC--ceecccCCCCCCCCCCCCCCCCCeeEEeeeeeech
Q 027992 75 IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHG--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDS 152 (215)
Q Consensus 75 ~i~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~ip~~~~~~~~q~~p~~~~~~~~~~~~ 152 (215)
.+.+ +....++.+.+ .+.. +|..-.+..+++| .+.-+.+.. ......+.+.|+|..
T Consensus 122 ~~~~----~~~~~~~~i~~--~~~~-----~p~yG~v~~d~~g~~~V~~i~EK~-----------~~s~~~~~GiY~f~~ 179 (255)
T 4evw_A 122 VFPD----ISQHSDGYLEV--FQGG-----GDNWSFAKPEHAGSTKVIQTAEKN-----------PISDLCSTGLYHFNR 179 (255)
T ss_dssp CCCG----GGGSSSEEEEE--EECC-----SSCSCEEEESSTTCCBEEEEESSS-----------CSSSEEEEEEEEESC
T ss_pred hhHH----HhhcCCcEEEE--EecC-----CCceeEEEECCCCCeEEEEEEecc-----------CccCcEEEeEEEECc
Confidence 4433 23334544443 2332 2333334446666 655442211 111356778899976
Q ss_pred H-HH----hhCcCCCCCCCC--Cccc-h-hhhh-hhhcCCeeEEEEec-CCCCCCCCHHHHHHHHHH
Q 027992 153 N-FL----KIYPGLHPTPLQ--LEED-L-EQLK-VLENGYKMKVIKVD-HEAHGVDAPEDVEKIESF 208 (215)
Q Consensus 153 ~-~l----~~~~~~~~~~~~--~~e~-l-~~~~-~~~~g~~v~~~~~~-~~~idIdt~~Dl~~ae~i 208 (215)
. .+ .++- ...... ..|+ + +... ++..|.++..+..+ ...+||+|++|+..|+..
T Consensus 180 ~~~~~~~l~~~i--~~~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~ 244 (255)
T 4evw_A 180 KEDYLEAYREYV--ARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQ 244 (255)
T ss_dssp HHHHHHHHHHHH--TSCGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC
T ss_pred HHHHHHHHHHHH--hcccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhc
Confidence 4 22 1211 000000 1222 2 2223 33478889888874 789999999999999875
No 51
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=97.67 E-value=0.00016 Score=55.35 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=49.0
Q ss_pred CCcEEEEcCcHHHHHHHHHc-CCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH-HH
Q 027992 10 FCGLVVATDDEKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG-VV 80 (215)
Q Consensus 10 ~d~ivV~td~~~i~~~~~~~-g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~-~i 80 (215)
+++|+|+|+++.. +.+ |+.++..+....|...+++.|+..+ ..|.++++.||+||++++.+++ ++
T Consensus 54 ~~~i~vv~~~~~~----~~~~~~~~v~~~~~~~g~~~~i~~al~~~--~~~~~lv~~~D~P~i~~~~i~~~l~ 120 (201)
T 2e8b_A 54 FKEVYIVAKDREK----FSFLNAPVVLDEFEESASIIGLYTALKHA--KEENVFVLSGDLPLMKKETVLYVLE 120 (201)
T ss_dssp CSEEEEEESCSGG----GGGGTCCEEECCCSSCCHHHHHHHHHHHC--SSSEEEEEETTCTTCCHHHHHHHHH
T ss_pred CCEEEEEeCcHHH----hhcCCceEEecCCCCCCcHHHHHHHHHHc--CCCCEEEEeCCcCcCCHHHHHHHHh
Confidence 7899999976544 223 7777654433223445788998887 3689999999999999999999 87
No 52
>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}
Probab=97.27 E-value=0.00049 Score=54.40 Aligned_cols=79 Identities=19% Similarity=0.085 Sum_probs=52.0
Q ss_pred CCCcEEEEcCc--HHH---HHHHHHcCCeEEeCCCCCCCchH-HHHHHHHHh-cCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 9 LFCGLVVATDD--EKI---AECCQQFGADVIMTSESCRNGTE-RCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 9 ~~d~ivV~td~--~~i---~~~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~-~~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
..+.++|+|.+ ..+ .... ..++.+.. +..+|++ ++.+|+..+ ....+.++++.+|+|++++++|+++++
T Consensus 51 ~~~~vvvvt~~~~~~~~~~~~~~-~~~~~~~~---q~~~gLg~rl~~a~~~~~~~~~~~vliigaD~P~L~~~~l~~a~~ 126 (242)
T 3cgx_A 51 HADLHICYVPGDADLPEKFKAWL-GPQHMFAA---QQGLDLGERMKHAMQKAFDDGYDRVVLMGSDIPDYPCELVQKALN 126 (242)
T ss_dssp SSEEEEEECCCCTTHHHHHHHHH-CTTSEEEE---CCSSSHHHHHHHHHHHHHHTTCSEEEEECSSCTTCCHHHHHHHHH
T ss_pred CCCEEEEEcCCchhhhhhhhhhc-cCCcEEec---CCCCCHHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCHHHHHHHHH
Confidence 35667777744 222 2222 22343332 3345665 788888875 346789999999999999999999998
Q ss_pred HHHcCCCceEE
Q 027992 82 ALQAAPDAVFS 92 (215)
Q Consensus 82 ~~~~~~~~~i~ 92 (215)
.+.. .+.+++
T Consensus 127 ~l~~-~d~Vig 136 (242)
T 3cgx_A 127 DLQH-YDAAIG 136 (242)
T ss_dssp HTTT-CSEEEE
T ss_pred Hhcc-CCeEEE
Confidence 8754 354443
No 53
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=92.10 E-value=0.4 Score=44.12 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=48.0
Q ss_pred HHHHHHHcCCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCc
Q 027992 22 IAECCQQFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 89 (215)
Q Consensus 22 i~~~~~~~g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~ 89 (215)
+++.++++++.++.++... +|.. ....|++.. ..|+|+++++|. ...++.+.++++.+.++++.
T Consensus 205 l~~~~~~~~v~~i~~~~~~-~GKa~alN~gl~~a--~gd~Il~lDaD~-~~~pd~L~~lv~~~~~dp~v 269 (802)
T 4hg6_A 205 LQQLCRELGVVYSTRERNE-HAKAGNMSAALERL--KGELVVVFDADH-VPSRDFLARTVGYFVEDPDL 269 (802)
T ss_dssp HHHHHHHHTCEEEECSSCC-SHHHHHHHHHHHHC--CCSEEEECCTTE-EECTTHHHHHHHHHHHSSSC
T ss_pred HHHHHHhcCcEEEEecCCC-CcchHHHHHHHHhc--CCCEEEEECCCC-CcChHHHHHHHHHHhcCCCe
Confidence 4556777898887666542 3444 567788776 679999999999 55899999999999655553
No 54
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=90.47 E-value=1.3 Score=35.82 Aligned_cols=74 Identities=20% Similarity=0.161 Sum_probs=53.0
Q ss_pred CcEEEEcC--cHHHHHHHHHcCCeEEe-------CCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 11 CGLVVATD--DEKIAECCQQFGADVIM-------TSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 11 d~ivV~td--~~~i~~~~~~~g~~v~~-------~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
.+|||+-| .+...+++++++.++.. .+.. .|.+ ....|+... ..|+|+++++|.-...++.|.+++
T Consensus 79 ~eiivVDdgS~D~t~~~~~~~~~~~~~~~~~~~~~~~n--~G~~~a~n~g~~~a--~gd~i~~lD~D~~~~~p~~l~~l~ 154 (329)
T 3ckj_A 79 DELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIR--PGKGEALWRSLAAS--RGDIVVFVDSDLINPHPMFVPWLV 154 (329)
T ss_dssp SEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCC--CSHHHHHHHHHHHC--CCSEEEECCTTEESCCTTHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHhhhhhccceeeeccCCCC--CCHHHHHHHHHHhC--CCCEEEEECCCCCCcChHHHHHHH
Confidence 57777764 35566788888877533 2222 4544 456777766 569999999999878999999999
Q ss_pred HHHHcCCC
Q 027992 81 KALQAAPD 88 (215)
Q Consensus 81 ~~~~~~~~ 88 (215)
+.+.++++
T Consensus 155 ~~l~~~~~ 162 (329)
T 3ckj_A 155 GPLLTGDG 162 (329)
T ss_dssp HHHHSCSS
T ss_pred HHHHhCCC
Confidence 99765444
No 55
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=90.26 E-value=1.7 Score=36.54 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=49.9
Q ss_pred cEEEEcC--cHHHHHHHH--------HcCCeEEeC--C--CCCCCchH-HHHHHH----HHhcCCCCEEEEecCCCCCCC
Q 027992 12 GLVVATD--DEKIAECCQ--------QFGADVIMT--S--ESCRNGTE-RCNEAL----QKLEKKYDIVVNIQGDEPLIE 72 (215)
Q Consensus 12 ~ivV~td--~~~i~~~~~--------~~g~~v~~~--~--~~~~~~~~-~i~~~l----~~~~~~~d~v~~~~~d~Pli~ 72 (215)
+|||+=| .+...++++ +.|++++.. . .....|.+ .+..|+ ... ..|++++++||.=-..
T Consensus 30 EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a--~gd~vv~mDADlq~~~ 107 (397)
T 2bo4_A 30 HEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEET--QWERIHFYDADITSFG 107 (397)
T ss_dssp CEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHC--CCSEEEECCTTCSSCC
T ss_pred EEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCC
Confidence 5666653 233334444 457776421 1 10013544 578888 443 6799999999965468
Q ss_pred HHHHHHHHHHHHcCCCceEE
Q 027992 73 PEIIDGVVKALQAAPDAVFS 92 (215)
Q Consensus 73 ~~~i~~~i~~~~~~~~~~i~ 92 (215)
|+.|.++++.+.++.|.+++
T Consensus 108 P~~i~~Ll~~l~~g~D~V~g 127 (397)
T 2bo4_A 108 PDWITKAEEAADFGYGLVRH 127 (397)
T ss_dssp HHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 99999999988765565554
No 56
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=90.19 E-value=1.6 Score=33.32 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=49.9
Q ss_pred cEEEEcC--cHHHHHHHHHc----CCeEEeCC--------CCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992 12 GLVVATD--DEKIAECCQQF----GADVIMTS--------ESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 12 ~ivV~td--~~~i~~~~~~~----g~~v~~~~--------~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i 76 (215)
+|||+-| .+...++++++ ++.++..+ .. .|.+ ....|++.. ..|+|+++++|.-+ .++.|
T Consensus 32 eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n--~G~~~a~N~gi~~a--~g~~i~~lD~Dd~~-~~~~l 106 (255)
T 1qg8_A 32 ELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEK--TRYAALINQAIEMA--EGEYITYATDDNIY-MPDRL 106 (255)
T ss_dssp EEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSS--CHHHHHHHHHHHHC--CCSEEEEEETTEEE-CTTHH
T ss_pred EEEEEECCCCchHHHHHHHHhhcCCEEEEecccccccccccc--cCHHHHHHHHHHHc--CCCEEEEeCCCCcc-ChHHH
Confidence 6777764 35556666665 45555554 23 4544 345677765 67999999999865 89999
Q ss_pred HHHHHHHHcCCCc
Q 027992 77 DGVVKALQAAPDA 89 (215)
Q Consensus 77 ~~~i~~~~~~~~~ 89 (215)
..+++.+.++++.
T Consensus 107 ~~~~~~~~~~~~~ 119 (255)
T 1qg8_A 107 LKMVRELDTHPEK 119 (255)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCc
Confidence 9999999765443
No 57
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=87.63 E-value=2.2 Score=35.69 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=54.8
Q ss_pred CCCcEEEEcCc--HHHHHHHHHcCCeEEeCCC-----CCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHH
Q 027992 9 LFCGLVVATDD--EKIAECCQQFGADVIMTSE-----SCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV 80 (215)
Q Consensus 9 ~~d~ivV~td~--~~i~~~~~~~g~~v~~~~~-----~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i 80 (215)
...+|+|+-|. +...+++++++.+++.+.. .-..|.+ .+..|+... ..|+|+++++|.=...|+.|.+++
T Consensus 125 ~~~EIIVVDDgStD~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A~n~G~~~A--~gd~i~~lDaD~~~~~p~~L~~l~ 202 (387)
T 3f1y_A 125 LIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYGDAHGKGDAMWRALSVT--RGDLVLYIDADTRDFRPQLAYGVL 202 (387)
T ss_dssp CCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHHHHHHTTTC--CSSEEEECCTTCSSCCTHHHHTTH
T ss_pred CCeEEEEEcCcCCccHHHHHHHhCchhcccceeEecCCccCCHHHHHHHHHHhc--CCCEEEEEcCCCCcCCHHHHHHHH
Confidence 34578877752 5567788888888653210 0113444 456676665 579999999999878999999999
Q ss_pred HHHHcCCC
Q 027992 81 KALQAAPD 88 (215)
Q Consensus 81 ~~~~~~~~ 88 (215)
+.+.++++
T Consensus 203 ~~l~~~p~ 210 (387)
T 3f1y_A 203 GPVLEVPG 210 (387)
T ss_dssp HHHHHSTT
T ss_pred HHHHHCCC
Confidence 99965433
No 58
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=85.67 E-value=6.8 Score=29.33 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=46.1
Q ss_pred cEEEEcCc--H----HHHHHHHHc-CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 12 GLVVATDD--E----KIAECCQQF-GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 12 ~ivV~td~--~----~i~~~~~~~-g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
+|||+-|. + .++++++++ .+.++ +.+. .|.+ ....|++.. ..|+|+++++|. .+.++.|..+++.+
T Consensus 36 eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i-~~~n--~G~~~a~N~g~~~a--~g~~i~~lD~Dd-~~~~~~l~~l~~~~ 109 (240)
T 3bcv_A 36 EIILIDDESPDNCPKICDDYAAQYPNIKVI-HKKN--AGLGMACNSGLDVA--TGEYVAFCDSDD-YVDSDMYMTMYNVA 109 (240)
T ss_dssp EEEEEECCCSSSHHHHHHHHHHHCSSEEEE-ECCC--CCHHHHHHHHHHHC--CSSEEEECCTTC-CCCTTHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhhCCCEEEE-ECCC--CChHHHHHHHHHHc--CCCEEEEECCCC-cCCHHHHHHHHHHH
Confidence 57776542 2 233444444 34444 3433 4554 456677766 569999999997 56899999999999
Q ss_pred Hc-CCCc
Q 027992 84 QA-APDA 89 (215)
Q Consensus 84 ~~-~~~~ 89 (215)
.+ +.+.
T Consensus 110 ~~~~~~~ 116 (240)
T 3bcv_A 110 QKYTCDA 116 (240)
T ss_dssp HHHTCSE
T ss_pred HhcCCCE
Confidence 75 4443
No 59
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=79.64 E-value=4.2 Score=34.43 Aligned_cols=75 Identities=8% Similarity=0.144 Sum_probs=49.8
Q ss_pred cEEEEcC---cHH----HHHHHHHcC--CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 12 GLVVATD---DEK----IAECCQQFG--ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 12 ~ivV~td---~~~----i~~~~~~~g--~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
+|||+-| +++ +++++++++ ++++..+.. .|.. ....|++.. ..|+|+++++|.= +.++.|..+++
T Consensus 63 EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n--~G~~~a~N~g~~~A--~gd~i~flD~D~~-~~p~~L~~ll~ 137 (472)
T 1xhb_A 63 EIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQR--SGLIRARLKGAAVS--RGQVITFLDAHCE-CTAGWLEPLLA 137 (472)
T ss_dssp EEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSC--CCHHHHHHHHHHHC--CSSEEEEEESSEE-ECTTCHHHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCC--CChHHHHHHHHHhc--cCCeEEEECCCeE-eCccHHHHHHH
Confidence 6777763 222 344445454 555655544 3444 455677765 5799999999976 78999999999
Q ss_pred HHHcCCCceE
Q 027992 82 ALQAAPDAVF 91 (215)
Q Consensus 82 ~~~~~~~~~i 91 (215)
.+.++++.++
T Consensus 138 ~~~~~~~~~v 147 (472)
T 1xhb_A 138 RIKHDRRTVV 147 (472)
T ss_dssp HHHHCTTEEE
T ss_pred HHHhCCCEEE
Confidence 9976655443
No 60
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=74.06 E-value=9.6 Score=33.46 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=49.9
Q ss_pred CcEEEEcC--cHHHHHHHHHc----CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHH
Q 027992 11 CGLVVATD--DEKIAECCQQF----GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 83 (215)
Q Consensus 11 d~ivV~td--~~~i~~~~~~~----g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~ 83 (215)
.+|+|+-| .+...++++++ ++.++.++ ....|.+ ....|+... ..|+|+++++|.=+ .++.|..+++.+
T Consensus 124 ~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~~-~~~~g~~~a~N~g~~~a--~g~~v~~lD~D~~~-~~~~l~~~~~~~ 199 (625)
T 2z86_A 124 YEVIVADDGSKENIEEIVREFESLLNIKYVRQK-DYGYQLCAVRNLGLRAA--KYNYVAILDCDMAP-NPLWVQSYMELL 199 (625)
T ss_dssp EEEEEEEESCSSCHHHHHHTTTTTSCEEEEEEC-CCSCCHHHHHHHHHHHC--CSSEEEEECTTEEE-CTTHHHHHHHHH
T ss_pred eEEEEEeCCCchhHHHHHHHhhhcCCeEEEEeC-CCCcchhHHHHHHHHhC--CcCEEEEECCCCCC-CHHHHHHHHHHH
Confidence 46777663 34455666654 44555444 3223444 345677765 67999999999877 899999999999
Q ss_pred HcCCCc
Q 027992 84 QAAPDA 89 (215)
Q Consensus 84 ~~~~~~ 89 (215)
.+++..
T Consensus 200 ~~~~~~ 205 (625)
T 2z86_A 200 AVDDNV 205 (625)
T ss_dssp HHCTTE
T ss_pred hcCCce
Confidence 765443
No 61
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=72.94 E-value=8.9 Score=33.55 Aligned_cols=76 Identities=9% Similarity=0.164 Sum_probs=50.0
Q ss_pred cEEEEcC---cHH----HHHHHHHc-CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHH
Q 027992 12 GLVVATD---DEK----IAECCQQF-GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 82 (215)
Q Consensus 12 ~ivV~td---~~~----i~~~~~~~-g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~ 82 (215)
+|||+-| ++. ++++++++ .++++..+.. .|.. ....|++.. ..|+|+++++|.=+ .+..|..+++.
T Consensus 146 EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~~~n--~G~~~A~N~G~~~A--~gd~i~fLD~D~~~-~p~~L~~ll~~ 220 (570)
T 2d7i_A 146 EIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKKR--EGLIRTRMLGASVA--TGDVITFLDSHCEA-NVNWLPPLLDR 220 (570)
T ss_dssp EEEEEECSCCCGGGTHHHHHHHTTSTTEEEEECSSC--CCHHHHHHHHHHHC--CSSEEEECCSSEEE-CTTCSHHHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHHHhCCeEEEEECCCC--CCHHHHHHHHHHhc--CCCEEEEEcCCccc-cccHHHHHHHH
Confidence 6777764 222 33444444 3455554444 4544 456677765 56999999999877 99999999999
Q ss_pred HHcCCCceEE
Q 027992 83 LQAAPDAVFS 92 (215)
Q Consensus 83 ~~~~~~~~i~ 92 (215)
+.++++.+++
T Consensus 221 l~~~~~~vv~ 230 (570)
T 2d7i_A 221 IARNRKTIVC 230 (570)
T ss_dssp HHHCTTEEEE
T ss_pred HHhCCCEEEe
Confidence 9776665443
No 62
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=72.04 E-value=7.6 Score=33.19 Aligned_cols=75 Identities=7% Similarity=0.123 Sum_probs=48.3
Q ss_pred cEEEEcC---cHHHHHHHHHc-CCeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992 12 GLVVATD---DEKIAECCQQF-GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 86 (215)
Q Consensus 12 ~ivV~td---~~~i~~~~~~~-g~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~ 86 (215)
+|||+=| ++.+...++++ ++.++..+.. .|.. ....|++.. ..|+|+++++|.- ..++.|..+++.+.++
T Consensus 100 EIIvVDDgS~D~t~~~~~~~~~~v~vi~~~~n--~G~~~A~N~G~~~A--~gd~i~flD~D~~-~~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 100 EIILVDDYSNDPEDGALLGKIEKVRVLRNDRR--EGLMRSRVRGADAA--QAKVLTFLDSHCE-CNEHWLEPLLERVAED 174 (501)
T ss_dssp EEEEEECSCSCTHHHHGGGGBTTEEEEECSSC--CHHHHHHHHHHHHC--CSSEEEECCSSEE-ECTTCHHHHHHHHHHC
T ss_pred eEEEEECCCCchHHHHHHhcCCCEEEEECCCC--cCHHHHHHHHHHhc--CCCEEEEECCCcc-cCccHHHHHHHHHHhC
Confidence 6777653 33333334433 3455544443 3544 356677665 5799999999985 5899999999999765
Q ss_pred CCceE
Q 027992 87 PDAVF 91 (215)
Q Consensus 87 ~~~~i 91 (215)
+..++
T Consensus 175 ~~~vv 179 (501)
T 2ffu_A 175 RTRVV 179 (501)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 55443
No 63
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=61.45 E-value=14 Score=33.01 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=47.6
Q ss_pred CCCcEEEEcCc-------HHHHHHHHHcC--CeEEeCCCCCCCchH-HHHHHHHHhc--CCCCEEEEecCCCCCCCHHHH
Q 027992 9 LFCGLVVATDD-------EKIAECCQQFG--ADVIMTSESCRNGTE-RCNEALQKLE--KKYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 9 ~~d~ivV~td~-------~~i~~~~~~~g--~~v~~~~~~~~~~~~-~i~~~l~~~~--~~~d~v~~~~~d~Pli~~~~i 76 (215)
.+.+|||+=+. +.+.+.++..+ +.++..+ . .|.+ ....|+.... .+.|+|+++++|. .+.++.|
T Consensus 211 ~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~-N--~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~-~~~pd~L 286 (657)
T 4fix_A 211 VIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP-N--LGGSGGYSRVMYEALKNTDCQQILFMDDDI-RLEPDSI 286 (657)
T ss_dssp TEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC-C--CHHHHHHHHHHHHHHHHCCCSEEEEECSSE-EECTHHH
T ss_pred CCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC-C--CCHHHHHHHHHHHHHhcCCCCEEEEECCCC-ccChhHH
Confidence 34477776531 24555555443 4445443 4 3443 3445555442 2679999999999 5679999
Q ss_pred HHHHHHHHcCCC
Q 027992 77 DGVVKALQAAPD 88 (215)
Q Consensus 77 ~~~i~~~~~~~~ 88 (215)
.++++.+..+++
T Consensus 287 ~~ll~~l~~~~~ 298 (657)
T 4fix_A 287 LRVLAMHRFAKA 298 (657)
T ss_dssp HHHHHHHHHBSS
T ss_pred HHHHHHHHhCCC
Confidence 999999975433
No 64
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=59.08 E-value=31 Score=30.14 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=34.1
Q ss_pred CchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCc
Q 027992 42 NGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 89 (215)
Q Consensus 42 ~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~ 89 (215)
.|.+ ....|+... ..|+|+++++|.= +.++.|..+++.+.++++.
T Consensus 440 ~G~~~a~n~g~~~a--~g~~i~~ld~D~~-~~~~~l~~~~~~~~~~~~~ 485 (625)
T 2z86_A 440 KGIGSASNTAVRLC--RGFYIGQLDSDDF-LEPDAVELCLDEFRKDLSL 485 (625)
T ss_dssp CCHHHHHHHHHHHC--CSSEEEECCTTCE-ECTTHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHhc--CCCEEEEECCCcc-cChhHHHHHHHHHHhCCCe
Confidence 3544 456677765 5699999999975 5999999999999755443
No 65
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=50.93 E-value=3.7 Score=30.55 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=11.0
Q ss_pred eeEEEEec--CCCC--CCCCHHHHHHHHHHHHh
Q 027992 183 KMKVIKVD--HEAH--GVDAPEDVEKIESFMRE 211 (215)
Q Consensus 183 ~v~~~~~~--~~~i--dIdt~~Dl~~ae~il~~ 211 (215)
++..+..+ ...+ |||||+||+.++..++.
T Consensus 168 ~~~~~~~~~~~~~~~~dintpedl~~~~~~~~~ 200 (201)
T 2e8b_A 168 GYNEVEIPEELRYTLLNMNTKEDLKRILAIENH 200 (201)
T ss_dssp CCEEEECCGGGGGGGCCSCCC------------
T ss_pred CeEEeccccccchhhcCCCCHHHHHHHHHHhhc
Confidence 34555543 3567 99999999999887653
No 66
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=48.74 E-value=15 Score=26.98 Aligned_cols=52 Identities=17% Similarity=0.093 Sum_probs=35.9
Q ss_pred cHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCC
Q 027992 19 DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLI 71 (215)
Q Consensus 19 ~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli 71 (215)
...+++.++++|+++.... -..++.+.+..+++.+...+|.|++.=|+.|--
T Consensus 25 ~~~l~~~L~~~G~~v~~~~-iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~ 76 (172)
T 3kbq_A 25 AAFIGNFLTYHGYQVRRGF-VVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTF 76 (172)
T ss_dssp HHHHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHHHCSEEEEESCCSSST
T ss_pred HHHHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCc
Confidence 3567788889999874321 233566777777766533579999999998853
No 67
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=48.68 E-value=1.3e+02 Score=25.80 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=27.3
Q ss_pred HHHh-cCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEEeeccc
Q 027992 51 LQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS 97 (215)
Q Consensus 51 l~~~-~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~~~~~~ 97 (215)
+..+ ....++++++.+|. |+...++. ++..+..+ ++.+++.+++
T Consensus 218 l~~l~~~g~~~v~V~ngDn-L~~~~d~~-~L~~~~~~-~a~~t~~v~~ 262 (488)
T 2i5k_A 218 LDALIAQGREILFVSNGDN-LGATVDLK-ILNHMIET-GAEYIMELTD 262 (488)
T ss_dssp HHHHHHTTCCEEEEECTTB-SSCCCCHH-HHHHHHHS-CCSEEEEEEE
T ss_pred HHHHHhcCCCEEEEEeCCc-CCCcccHH-HHHHHHhc-CCcEEEEEEE
Confidence 3444 23568999999999 99888885 44555432 3334433333
No 68
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=47.23 E-value=51 Score=24.15 Aligned_cols=72 Identities=10% Similarity=0.112 Sum_probs=41.6
Q ss_pred CCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchH---HHHHHHHHhcCCCCEEEEecCCC--CCCCHHHHHHHHH
Q 027992 8 FLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTE---RCNEALQKLEKKYDIVVNIQGDE--PLIEPEIIDGVVK 81 (215)
Q Consensus 8 ~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~---~i~~~l~~~~~~~d~v~~~~~d~--Pli~~~~i~~~i~ 81 (215)
...+.|.|.+-+....+.++++|+.++.+.-.-..+-. .++..-+.+ ++.+.|.++ ++. -++++..|++.+.
T Consensus 79 ~~~~~v~V~~~e~l~vd~~~~~~a~~ivrGlr~~~Dfeye~~~a~~nr~l-~~ietvfl~-~~~~~~~ISST~IRe~~~ 155 (177)
T 3nbk_A 79 THLPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHI-AGVDTFFVA-TAPRYSFVSSSLAKEVAM 155 (177)
T ss_dssp TTCTTEEEEECCSCHHHHHHHTTCCEEEEEECTTCCHHHHHHHHHHHHHH-HCCEEEEEE-CCGGGSSCCHHHHHHHHH
T ss_pred CCCCCEEEEecCchHHHHHHHcCCCEEEECCCchhHHHHHHHHHHHHHhc-CCCceEEEe-CCCcccccchHHHHHHHH
Confidence 44567777775555668888899987544312112222 122222334 456655544 333 3799999998754
No 69
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=45.91 E-value=25 Score=25.41 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcC--CCCEEEEecCCCCC
Q 027992 20 EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPL 70 (215)
Q Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~--~~d~v~~~~~d~Pl 70 (215)
..+.+.++++|+++.... -..++.+.+..++...-. .+|.|++.=|+.|=
T Consensus 34 ~~l~~~L~~~G~~v~~~~-iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 85 (169)
T 1y5e_A 34 QLLHELLKEAGHKVTSYE-IVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGIT 85 (169)
T ss_dssp HHHHHHHHHHTCEEEEEE-EECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSS
T ss_pred HHHHHHHHHCCCeEeEEE-EeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 556778888898764321 233556677777766533 67888888888875
No 70
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=43.13 E-value=33 Score=25.05 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCC--CCEEEEecCCCCC
Q 027992 21 KIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKK--YDIVVNIQGDEPL 70 (215)
Q Consensus 21 ~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~--~d~v~~~~~d~Pl 70 (215)
.+++.++++|+++.... -..++.+.+..++...-.+ +|.|++.=|+.|-
T Consensus 44 ~L~~~l~~~G~~v~~~~-iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g 94 (178)
T 2pjk_A 44 IIKQLLIENGHKIIGYS-LVPDDKIKILKAFTDALSIDEVDVIISTGGTGYS 94 (178)
T ss_dssp HHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSS
T ss_pred HHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 34566677777653221 2224556666666554222 6777777776664
No 71
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=43.05 E-value=38 Score=24.45 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHh--cCCCCEEEEecCCCCCC
Q 027992 20 EKIAECCQQFGADVIMTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLI 71 (215)
Q Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~--~~~~d~v~~~~~d~Pli 71 (215)
+.|++.++++|+++.... -..++.+.+..++... ...+|.|+..=|+.|--
T Consensus 43 ~~L~~~L~~~G~~v~~~~-iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~~ 95 (178)
T 3iwt_A 43 DIIKQLLIENGHKIIGYS-LVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSP 95 (178)
T ss_dssp HHHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSST
T ss_pred HHHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccCC
Confidence 457788888999874322 2335566777777643 24679999988888874
No 72
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=41.24 E-value=21 Score=25.74 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCCC
Q 027992 20 EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLI 71 (215)
Q Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pli 71 (215)
..+.+.++++|+++... .-..++ +.+..++...- ..+|.|++.=|++|=-
T Consensus 30 ~~l~~~l~~~G~~v~~~-~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~ 80 (164)
T 3pzy_A 30 PIITEWLAQQGFSSAQP-EVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAP 80 (164)
T ss_dssp HHHHHHHHHTTCEECCC-EEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred HHHHHHHHHCCCEEEEE-EEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 55678888899886422 123356 77777776543 3689999988888853
No 73
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=38.74 E-value=35 Score=24.71 Aligned_cols=50 Identities=10% Similarity=0.127 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcC--CCCEEEEecCCCCC
Q 027992 20 EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPL 70 (215)
Q Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~--~~d~v~~~~~d~Pl 70 (215)
..+.+.++++|+++.... -..++.+.+..++..+.. .+|.|++.=|+.|=
T Consensus 31 ~~l~~~L~~~G~~v~~~~-iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~ 82 (172)
T 1mkz_A 31 HYLRDSAQEAGHHVVDKA-IVKENRYAIRAQVSAWIASDDVQVVLITGGTGLT 82 (172)
T ss_dssp HHHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSS
T ss_pred HHHHHHHHHCCCeEeEEE-EeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCC
Confidence 557788888999874321 233566777777766432 48999998888885
No 74
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=37.20 E-value=25 Score=25.19 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcC--CCCEEEEecCCCCCCCHHHHHHHHH
Q 027992 20 EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVK 81 (215)
Q Consensus 20 ~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~--~~d~v~~~~~d~Pli~~~~i~~~i~ 81 (215)
..+++.++++|+++.... -..++.+.+..++...-. .+|.|++.=|+.|= ..+...++++
T Consensus 24 ~~l~~~l~~~G~~v~~~~-iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g-~~D~t~ea~~ 85 (164)
T 2is8_A 24 LAIREVLAGGPFEVAAYE-LVPDEPPMIKKVLRLWADREGLDLILTNGGTGLA-PRDRTPEATR 85 (164)
T ss_dssp HHHHHHHTTSSEEEEEEE-EECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS-TTCCHHHHHH
T ss_pred HHHHHHHHHCCCeEeEEE-EcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC-CCCChHHHHH
Confidence 456777888888764221 233566677777765432 68999888888886 3333334443
No 75
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=35.74 E-value=1.5e+02 Score=23.33 Aligned_cols=61 Identities=7% Similarity=0.128 Sum_probs=27.4
Q ss_pred EEEEcCcHHHHHHHHHcCCeEEeCCCCCCCc---hHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Q 027992 13 LVVATDDEKIAECCQQFGADVIMTSESCRNG---TERCNEALQKLEKKYDIVVNIQGDEPLIEPEII 76 (215)
Q Consensus 13 ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~---~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i 76 (215)
+.|+++.+....+|+++|+.++.-|....+- ...+...++.. ++| ++++-+=+-.++++.+
T Consensus 121 ~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~--~~D-livla~y~~il~~~~l 184 (286)
T 3n0v_A 121 VAVVSNHPDLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEET--GAE-LVILARYMQVLSPELC 184 (286)
T ss_dssp EEEEESSSTTHHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHH--TCS-EEEESSCCSCCCHHHH
T ss_pred EEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhc--CCC-EEEecccccccCHHHH
Confidence 3444555555556666666654322221111 11233444443 345 3333455556665544
No 76
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=35.13 E-value=43 Score=24.73 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhc-CCCCEEEEecCCCCC
Q 027992 21 KIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPL 70 (215)
Q Consensus 21 ~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~-~~~d~v~~~~~d~Pl 70 (215)
.+.+.++++|+++.... -..++.+.+..++...- .++|.|++.=|++|-
T Consensus 53 ~L~~~L~~~G~~v~~~~-iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g 102 (185)
T 3rfq_A 53 LVTELLTEAGFVVDGVV-AVEADEVDIRNALNTAVIGGVDLVVSVGGTGVT 102 (185)
T ss_dssp HHHHHHHHTTEEEEEEE-EECSCHHHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred HHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 34456666666653211 12234455555554432 356766666666653
No 77
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=34.23 E-value=52 Score=22.81 Aligned_cols=6 Identities=0% Similarity=0.014 Sum_probs=2.5
Q ss_pred HHHHcC
Q 027992 25 CCQQFG 30 (215)
Q Consensus 25 ~~~~~g 30 (215)
+++++|
T Consensus 59 ~l~~~~ 64 (143)
T 3glv_A 59 LISELK 64 (143)
T ss_dssp HHTTBT
T ss_pred HHHhcC
Confidence 344444
No 78
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=33.31 E-value=1.8e+02 Score=23.00 Aligned_cols=62 Identities=10% Similarity=0.116 Sum_probs=28.7
Q ss_pred EEEEcCcHHHHHHHHHcCCeEEeCCCCCCCc---hHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH
Q 027992 13 LVVATDDEKIAECCQQFGADVIMTSESCRNG---TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 77 (215)
Q Consensus 13 ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~---~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~ 77 (215)
+.|+++.+....+|+++|+.++.-|....+- ...+...++.. ++| ++++-+=+-.++++.++
T Consensus 126 ~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~--~~D-livla~y~~il~~~~l~ 190 (292)
T 3lou_A 126 VGIVSNHPDFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETS--GAE-LVILARYMQVLSPEASA 190 (292)
T ss_dssp EEEEESSSTTHHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHH--TCS-EEEESSCCSCCCHHHHH
T ss_pred EEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHh--CCC-EEEecCchhhCCHHHHh
Confidence 4455555555556666666654323221111 11234444443 345 33344555666665543
No 79
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=31.73 E-value=67 Score=21.59 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=25.1
Q ss_pred CCCCcEEEEc-Cc-HHHH---HHHHHcCCeEEe--CCCCCCCchHHHHHHHHHh
Q 027992 8 FLFCGLVVAT-DD-EKIA---ECCQQFGADVIM--TSESCRNGTERCNEALQKL 54 (215)
Q Consensus 8 ~~~d~ivV~t-d~-~~i~---~~~~~~g~~v~~--~~~~~~~~~~~i~~~l~~~ 54 (215)
+.+|-++++| |+ ++|+ +.|+..|++++. +. .+.++-..|-..+
T Consensus 76 pqldvvvivttddkewikdfieeakergvevfvvynn----kdddrrkeaqqef 125 (162)
T 2l82_A 76 PQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNN----KDDDRRKEAQQEF 125 (162)
T ss_dssp TTCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEEC----SCHHHHHHHHHHH
T ss_pred CCCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEecC----CCchhHHHHHHHh
Confidence 4566666665 44 5665 446668998742 33 3455555665555
No 80
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.13 E-value=32 Score=22.49 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=28.6
Q ss_pred cCcHHH---HHHHHHcCCeE-EeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 17 TDDEKI---AECCQQFGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 17 td~~~i---~~~~~~~g~~v-~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
||.+.+ +++.++.|+++ -.|.+. .-.+++-+-++.+ ++.+++++.- ..+.-+++|...+
T Consensus 10 tdeetlrkfkdiikkngfkvrtvrspq--elkdsieelvkky--nativvvvvd-----dkewaekairfvk 72 (134)
T 2l69_A 10 TDEETLRKFKDIIKKNGFKVRTVRSPQ--ELKDSIEELVKKY--NATIVVVVVD-----DKEWAEKAIRFVK 72 (134)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECSHH--HHHHHHHHHTTCC--CCEEEEEECS-----SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCceEEEecCHH--HHHHHHHHHHHHh--CCeEEEEEEc-----cHHHHHHHHHHHH
Confidence 354443 47788889887 334322 1122332222222 3344444433 3566666666554
No 81
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=31.03 E-value=1e+02 Score=22.00 Aligned_cols=69 Identities=7% Similarity=0.090 Sum_probs=37.1
Q ss_pred CcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchH---HHHHHHHHhcCCCCEEEEecCCCC---CCCHHHHHHHHH
Q 027992 11 CGLVVATDDEKIAECCQQFGADVIMTSESCRNGTE---RCNEALQKLEKKYDIVVNIQGDEP---LIEPEIIDGVVK 81 (215)
Q Consensus 11 d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~---~i~~~l~~~~~~~d~v~~~~~d~P---li~~~~i~~~i~ 81 (215)
+.|.|.+-+....+.++++++.++.+...-.++-. .+...-+.+..+.+.+.++. .| ++++..|++.+.
T Consensus 65 ~~v~V~~~~~l~~~~~~~~~~~~~v~G~r~~~Df~~e~~~a~~nr~l~~~ietv~l~~--~~~~~~ISST~IRe~~~ 139 (162)
T 4f3r_A 65 ERVEVLPLTGLLVDFAKTHQANFILRGLRAVSDFDYEFQLAHMNYQLSPEIETIFLPA--REGYSYVSGTMVREIVT 139 (162)
T ss_dssp TTEEEEECCSCHHHHHHHTTCCEEEEEECSHHHHHHHHHHHHHHHHHCTTCEEEEEEC--CGGGSSCCHHHHHHHHH
T ss_pred CCEEEEeccchHHHHHHHcCCCEEEECCCchhhhhhHHHHHHHHHHhCCCccEEEEEC--CcccccccHHHHHHHHH
Confidence 66767664445567788888887544311101111 11222223434555555443 34 899999988654
No 82
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=30.41 E-value=1.7e+02 Score=23.24 Aligned_cols=8 Identities=25% Similarity=0.281 Sum_probs=5.5
Q ss_pred CCCHHHHH
Q 027992 196 VDAPEDVE 203 (215)
Q Consensus 196 Idt~~Dl~ 203 (215)
=||+++|.
T Consensus 261 ~dt~~~L~ 268 (302)
T 3o1l_A 261 RDSIENMV 268 (302)
T ss_dssp TCCHHHHH
T ss_pred CCCHHHHH
Confidence 37888774
No 83
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=29.70 E-value=1.6e+02 Score=24.58 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=28.2
Q ss_pred chH-HHHHHHHHh-cCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Q 027992 43 GTE-RCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 84 (215)
Q Consensus 43 ~~~-~i~~~l~~~-~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~ 84 (215)
|.. .+..|+... ....|+|++++||. ..|..+.+.++.+.
T Consensus 144 GKG~Am~aGl~~A~~~~gd~Vv~~DaDl--~iP~~v~~~~kgy~ 185 (394)
T 2zu9_A 144 GKGEGMLVGLLLAKAIGAEYVGFVDADN--YIPGAVNEYVKDYA 185 (394)
T ss_dssp SHHHHHHHHHHHHHHTTCSEEEECCSCB--SCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhhCCCCEEEEEeCCC--CCHHHHHHHHHHhh
Confidence 443 466777654 22568999999999 56887877777664
No 84
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=29.61 E-value=85 Score=22.33 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=41.1
Q ss_pred CCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchH---HHHHHHHHhcCCCCEEEEecCCCC---CCCHHHHHHHHH
Q 027992 8 FLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTE---RCNEALQKLEKKYDIVVNIQGDEP---LIEPEIIDGVVK 81 (215)
Q Consensus 8 ~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~---~i~~~l~~~~~~~d~v~~~~~d~P---li~~~~i~~~i~ 81 (215)
..++.|.|..-+....+.++++++.++.+...-.++-. .+...=+.+..+.+.|. ....| ++|+..|++++.
T Consensus 60 ~~~~~v~v~~~~~l~~~~~~~~~~~~ivrG~r~~~D~~ye~~~a~~n~~l~~~ietv~--l~~~~~~~~iSSt~vRe~~~ 137 (157)
T 3nv7_A 60 KSFKNVECVAFEGLLAYLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLY--FMPTLQNAFISSSIVRSIIA 137 (157)
T ss_dssp TTSTTEEEEEECSCHHHHHHHTTCCCBCCCCSCCCCHHHHHHHHHHHHHSSCCCCCCC--CCCCHHHHTCCHHHHHHHHH
T ss_pred cCCCcEEEEecCchHHHHHHHcCCCEEEECCcccchhhhhHHHHHHHHHhCCCceEEE--EcCCcccceeeHHHHHHHHH
Confidence 45677777664445667888888887655422222222 12222234434555333 33466 999999988654
No 85
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=28.59 E-value=1.9e+02 Score=21.71 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=37.9
Q ss_pred EEEEcC--cHHHHHHHHHcCCeEEe-CCCCCCCch---HHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Q 027992 13 LVVATD--DEKIAECCQQFGADVIM-TSESCRNGT---ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 78 (215)
Q Consensus 13 ivV~td--~~~i~~~~~~~g~~v~~-~~~~~~~~~---~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~ 78 (215)
+.|+|+ +..+.+.|+++|+.++. .+..+.+.. ..+...++.+ .+|.+ ++-+=+-+++++.++.
T Consensus 33 ~~Visn~~~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~--~~Dli-v~agy~~Il~~~~l~~ 101 (211)
T 3p9x_A 33 ALLITDKPGAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEK--QIDFV-VLAGYMRLVGPTLLGA 101 (211)
T ss_dssp EEEEESCSSSHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHT--TCCEE-EESSCCSCCCHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhc--CCCEE-EEeCchhhcCHHHHhh
Confidence 455555 34577889999998743 333333221 2455666665 56754 4567778888876644
No 86
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=28.25 E-value=37 Score=24.40 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=29.9
Q ss_pred HHHHHH----HHHcCCeEEeCCCCCCCchHHHHHHHHHhcC-CCCEEEEecCCCCC
Q 027992 20 EKIAEC----CQQFGADVIMTSESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPL 70 (215)
Q Consensus 20 ~~i~~~----~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~-~~d~v~~~~~d~Pl 70 (215)
..+++. ++++|+++.... -..++.+.+..+++.+.. ++|.|++.=|+.|=
T Consensus 28 ~~l~~~~~~~l~~~G~~v~~~~-iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~ 82 (167)
T 2g2c_A 28 PLLQRLMSDELQDYSYELISEV-VVPEGYDTVVEAIATALKQGARFIITAGGTGIR 82 (167)
T ss_dssp HHHHHHHCC----CEEEEEEEE-EECSSHHHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred HHHHHhHHhHHHHCCCEEeEEE-EeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 456677 777887763211 233556677777765433 47888888888874
No 87
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=27.77 E-value=13 Score=33.57 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred CeEEeCCCCCCCchH-HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcCCCceEE
Q 027992 31 ADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 92 (215)
Q Consensus 31 ~~v~~~~~~~~~~~~-~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~~~~~i~ 92 (215)
+.++..+.. .|.+ ....|+... ..|+|+++++|--+ .|+.|+.+++.+. +.+.+++
T Consensus 60 i~~i~~~~n--~G~~~arN~gi~~A--~gdyI~flD~Dd~~-~p~~l~~l~~~l~-~~d~v~~ 116 (729)
T 3l7i_A 60 IRFIDLDEN--SGHAHARNIALEEV--ETPYFMFLDADDEL-ASYAITFYLEKFN-NTDGLIA 116 (729)
T ss_dssp ---------------------------------------------------------------
T ss_pred EEEEECCCC--CCHHHHHHHHHHhc--cCCEEEEECCCCCC-ChhHHHHHHHHhc-CCCEEEE
Confidence 444443433 3433 344566655 56899999999887 8999999999987 4454444
No 88
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=26.69 E-value=1.7e+02 Score=22.98 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=40.0
Q ss_pred CCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 8 FLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 8 ~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
.....|++++.+++-.+.++++|+..+....+ .+.......+... ...|.++-..+ .+..++.+++.++.
T Consensus 183 ~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~--~~~~~~~~~~~~~-~g~d~v~d~~G-----~~~~~~~~~~~l~~ 252 (346)
T 4a2c_A 183 LGAKSVTAIDISSEKLALAKSFGAMQTFNSSE--MSAPQMQSVLREL-RFNQLILETAG-----VPQTVELAVEIAGP 252 (346)
T ss_dssp TTCSEEEEEESCHHHHHHHHHTTCSEEEETTT--SCHHHHHHHHGGG-CSSEEEEECSC-----SHHHHHHHHHHCCT
T ss_pred cCCcEEEEEechHHHHHHHHHcCCeEEEeCCC--CCHHHHHHhhccc-CCccccccccc-----ccchhhhhhheecC
Confidence 34455666666677678899999876443322 2222222222221 34566665544 46778888877754
No 89
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=26.66 E-value=56 Score=23.71 Aligned_cols=50 Identities=12% Similarity=0.158 Sum_probs=33.5
Q ss_pred HHHHHHHH---HcCCeEEeCCCCCCCchHHHHHHHHHhcC--CCCEEEEecCCCCCC
Q 027992 20 EKIAECCQ---QFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLI 71 (215)
Q Consensus 20 ~~i~~~~~---~~g~~v~~~~~~~~~~~~~i~~~l~~~~~--~~d~v~~~~~d~Pli 71 (215)
..+.+.++ ++|+++ ... -..++.+.+..++...-. .+|+|++.=|+.|=-
T Consensus 28 ~~l~~~l~~l~~~G~~v-~~~-iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g~ 82 (178)
T 2pbq_A 28 KAIIDYLKDVIITPFEV-EYR-VIPDERDLIEKTLIELADEKGCSLILTTGGTGPAP 82 (178)
T ss_dssp HHHHHHHHHHBCSCCEE-EEE-EECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred HHHHHHHHHHHhCCCEE-EEE-EcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 45667666 789887 322 334566777777766532 689999988888753
No 90
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=26.65 E-value=1e+02 Score=24.59 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=34.5
Q ss_pred CCCcEEEEcCcH---------HHHHHHHHcCCeEEeCCCCCCCchHHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH
Q 027992 9 LFCGLVVATDDE---------KIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 77 (215)
Q Consensus 9 ~~d~ivV~td~~---------~i~~~~~~~g~~v~~~~~~~~~~~~~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~ 77 (215)
..+-+.|+|+.+ .+++.|+++|+.++. +.... ...+...++.+ ++|.++ +-+=.-++.++.++
T Consensus 23 ~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~-~~~~~--~~~~~~~l~~~--~~Dliv-~~~y~~ilp~~il~ 94 (305)
T 2bln_A 23 GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYA-PDNVN--HPLWVERIAQL--SPDVIF-SFYYRHLIYDEILQ 94 (305)
T ss_dssp TCEEEEEECCCC------CCCCHHHHHHHHTCCEEC-CSCCC--SHHHHHHHHHT--CCSEEE-EESCCSCCCHHHHT
T ss_pred CCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEEC-CCcCC--cHHHHHHHHhc--CCCEEE-EeccccccCHHHHh
Confidence 345556777533 278899999998763 43322 22344555554 455433 33444555555443
No 91
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=26.31 E-value=2.4e+02 Score=22.34 Aligned_cols=76 Identities=9% Similarity=0.040 Sum_probs=47.3
Q ss_pred CcEEEEcC-cHHHHHHHHHcCCeEEeCCC--CCCCc--hHHHHHHHHHhcCCCCEEEEecCCCCC---CCHHHHHHHHHH
Q 027992 11 CGLVVATD-DEKIAECCQQFGADVIMTSE--SCRNG--TERCNEALQKLEKKYDIVVNIQGDEPL---IEPEIIDGVVKA 82 (215)
Q Consensus 11 d~ivV~td-~~~i~~~~~~~g~~v~~~~~--~~~~~--~~~i~~~l~~~~~~~d~v~~~~~d~Pl---i~~~~i~~~i~~ 82 (215)
|.|+|.+. .......++..|++++.-+. .-.++ .+.+...++.+......+++..+.+|. .+.+.++++++.
T Consensus 124 d~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~ 203 (401)
T 7aat_A 124 RDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASV 203 (401)
T ss_dssp CEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHH
T ss_pred CEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Confidence 56666653 35566777788887643221 10122 234555665543345577777788887 589999999998
Q ss_pred HHcC
Q 027992 83 LQAA 86 (215)
Q Consensus 83 ~~~~ 86 (215)
.+++
T Consensus 204 ~~~~ 207 (401)
T 7aat_A 204 VKKR 207 (401)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8764
No 92
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=26.06 E-value=1.8e+02 Score=21.25 Aligned_cols=74 Identities=11% Similarity=0.052 Sum_probs=38.0
Q ss_pred CCCCcEEEEcCcHHHHHHHHHcCCeEEeCCCCCCCchH---HHHHHHHHhcCCCCEEEEecC-CCCCCCHHHHHHHHH
Q 027992 8 FLFCGLVVATDDEKIAECCQQFGADVIMTSESCRNGTE---RCNEALQKLEKKYDIVVNIQG-DEPLIEPEIIDGVVK 81 (215)
Q Consensus 8 ~~~d~ivV~td~~~i~~~~~~~g~~v~~~~~~~~~~~~---~i~~~l~~~~~~~d~v~~~~~-d~Pli~~~~i~~~i~ 81 (215)
..++.|.|..-+..+.+.++++++.++.+...-..+-. .+...-+.+..+.+.+.+... ..-.+|+..|++.+.
T Consensus 80 ~~v~~v~v~~f~~~~~d~l~~l~~~~iv~G~r~~~Df~~E~~la~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~ 157 (187)
T 3k9w_A 80 GHYPNVKVMGFTGLLKDFVRANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQ 157 (187)
T ss_dssp TTCTTEEEEEESSCHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHCTTCEEEEECCCGGGTTCCHHHHHHHHH
T ss_pred ccCCcEEEEechhhHHHHHHHcCCCEEEECCCcccccchHHHHHHHHHHhCCCCcEEEEecccccccccHHHHHHHHH
Confidence 45777777664444557788888877443211112211 111211234334455444321 124788888888654
No 93
>3pkz_A Recombinase SIN; small serine recombinase, resolvase, DNA, recombination; 1.80A {Staphylococcus aureus}
Probab=25.69 E-value=58 Score=21.88 Aligned_cols=70 Identities=21% Similarity=0.173 Sum_probs=45.4
Q ss_pred EEcCcHHH---HHHHHHcCCeEEeCCCCCCCch--H--HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992 15 VATDDEKI---AECCQQFGADVIMTSESCRNGT--E--RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 86 (215)
Q Consensus 15 V~td~~~i---~~~~~~~g~~v~~~~~~~~~~~--~--~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~ 86 (215)
|+|+++.+ .+.++++|...+.... .+|.. . .+...+..+... |.+++..-|+=-++..++-..++.+.+.
T Consensus 8 vSt~~Qsl~~Q~~~l~~~~~~~i~~d~-~Sg~~~~~Rp~l~~ll~~~~~g-d~lvv~~ldRl~R~~~~~~~~~~~l~~~ 84 (124)
T 3pkz_A 8 VSSLDQNLERQLENLKTFGAEKIFTEK-QSGKSIENRPILQKALNFVEMG-DRFIVESIDRLGRNYNEVIHTVNYLKDK 84 (124)
T ss_dssp ESSTTSCHHHHHHHHHHTTCSEEEEEE-SCSSCSTTCHHHHHHHHHCCTT-CEEEESSHHHHCSCHHHHHHHHHHHHHT
T ss_pred eCCCcCCHHHHHHHHHHhCCceEEEEc-ccCCChhcCHHHHHHHHHHHCC-CEEEEeecccccCCHHHHHHHHHHHHHC
Confidence 55644333 2456778765432222 22221 2 356666666544 9999999999999999999999988764
No 94
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=24.40 E-value=72 Score=23.46 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=33.1
Q ss_pred HHHHHHHHH---cCCeEEeCCCCCCCchHHHHHHHHHhc--CCCCEEEEecCCCCC
Q 027992 20 EKIAECCQQ---FGADVIMTSESCRNGTERCNEALQKLE--KKYDIVVNIQGDEPL 70 (215)
Q Consensus 20 ~~i~~~~~~---~g~~v~~~~~~~~~~~~~i~~~l~~~~--~~~d~v~~~~~d~Pl 70 (215)
..+.+.+++ +|+++.... -..++.+.+..++...- ..+|.|++.=|+.|=
T Consensus 37 ~~L~~~L~~~~~~G~~v~~~~-iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg~g 91 (189)
T 1jlj_A 37 INLKDLVQDPSLLGGTISAYK-IVPDEIEEIKETLIDWCDEKELNLILTTGGTGFA 91 (189)
T ss_dssp HHHHHHHHCTTTTCCEEEEEE-EECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred HHHHHHHhchhcCCcEEEEEE-EeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCCCC
Confidence 456677777 788764321 23356667777776542 268999999888883
No 95
>2gm5_A Transposon gamma-delta resolvase; site specific recombination, recombin; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A 1ght_A 1hx7_A
Probab=23.25 E-value=80 Score=21.68 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=42.3
Q ss_pred EEcCcHHHH---HHHHHcCCeE--EeCCCCCCCchH----HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Q 027992 15 VATDDEKIA---ECCQQFGADV--IMTSESCRNGTE----RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 85 (215)
Q Consensus 15 V~td~~~i~---~~~~~~g~~v--~~~~~~~~~~~~----~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~ 85 (215)
|+|+++.+. +.++++|..+ +..... +|.. .+...+..+.. .|.|++..-|+=-++..++-..++.+.+
T Consensus 8 vSt~~Q~l~~Q~~~l~~~g~~~~~~~~D~~--Sg~~~~Rp~l~~ll~~~~~-gd~lvV~~ldRL~R~~~d~~~~~~~l~~ 84 (139)
T 2gm5_A 8 VSTSQQSLDIQVRALKDAGVKANRIFTDKA--SGSSSDRKGLDLLRMKVKE-GDVILVKKLDHLGRDTADMIQLIKEFDA 84 (139)
T ss_dssp ESSCHHHHHHHHHHHHHTTCCGGGEEEEEC-------CCHHHHHHHHHCCT-TCEEEESSGGGTSSSHHHHHHHHHHHHH
T ss_pred eCCCccCHHHHHHHHHHCCCceeEEEEECC--CCCccccHHHHHHHHHHHC-CCEEEEEecccccCCHHHHHHHHHHHHh
Confidence 667654443 4455677532 222211 3332 24555555543 3899999999999999999999988865
Q ss_pred C
Q 027992 86 A 86 (215)
Q Consensus 86 ~ 86 (215)
.
T Consensus 85 ~ 85 (139)
T 2gm5_A 85 Q 85 (139)
T ss_dssp T
T ss_pred C
Confidence 4
No 96
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=22.85 E-value=2e+02 Score=20.09 Aligned_cols=65 Identities=5% Similarity=0.049 Sum_probs=42.3
Q ss_pred HHHHHHHcCCeEE--eCCCCCCCch--H--HHHHHHHHhcCC---CCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992 22 IAECCQQFGADVI--MTSESCRNGT--E--RCNEALQKLEKK---YDIVVNIQGDEPLIEPEIIDGVVKALQAA 86 (215)
Q Consensus 22 i~~~~~~~g~~v~--~~~~~~~~~~--~--~i~~~l~~~~~~---~d~v~~~~~d~Pli~~~~i~~~i~~~~~~ 86 (215)
+.++|.+.|.+++ ......++.. . .+...+..+... .|.|++..-|+=-++..++-.+++.+.+.
T Consensus 31 l~~~a~~~g~~i~~~~~D~g~Sg~~~~~Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~~~~~~~~~~l~~~ 104 (167)
T 3guv_A 31 MKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDY 104 (167)
T ss_dssp HHHHHHHTTCEEEEEEEECCCSSSSSCCCHHHHHHHHHHHTCTTCCSEEEESCGGGTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCEEEEEEeecCCCCCCcccCHHHHHHHHHHHcCCCCccEEEEEeCchhcCCHHHHHHHHHHHHHC
Confidence 4566777788752 2221122211 1 244555555333 79999999999999999999999888754
No 97
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=22.80 E-value=65 Score=23.41 Aligned_cols=69 Identities=25% Similarity=0.270 Sum_probs=44.3
Q ss_pred EEcCcHHHH---HHHHHcCCeEEeCCCCCCCchH----HHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHHHHHHHcC
Q 027992 15 VATDDEKIA---ECCQQFGADVIMTSESCRNGTE----RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 86 (215)
Q Consensus 15 V~td~~~i~---~~~~~~g~~v~~~~~~~~~~~~----~i~~~l~~~~~~~d~v~~~~~d~Pli~~~~i~~~i~~~~~~ 86 (215)
|||+++.+. +.++++|+..+.... . +|.. .+...+..+... |.|++..-|+=-++..++-.+++.+.+.
T Consensus 8 vSt~~Q~~~~Q~~~l~~~~~~~i~~D~-~-SG~~~~Rp~l~~ll~~~~~g-d~lvv~~ldRL~R~~~~~~~~~~~l~~~ 83 (193)
T 3uj3_X 8 VATNDQNTDLQRNALVCAGCEQIFEDK-L-SGTRTDRPGLKRALKRLQKG-DTLVVWKLDRLGRSMKHLISLVGELRER 83 (193)
T ss_dssp CSSCCSSHHHHHHHHHHTTCCBCCEEC-C-SSCSSSCSTTHHHHHTCCTT-CCEEESCSTTTTCCHHHHHHHHHHHHTT
T ss_pred eCCcccCHHHHHHHHHHcCCcEEEEEC-C-cCCCCCCHHHHHHHHHccCC-CEEEEEECccccCChHHHHHHHHHHHHc
Confidence 556543332 456667765422221 2 2322 245556666434 9999999999999999999999998754
Done!