BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027994
(215 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359488729|ref|XP_002280233.2| PREDICTED: uncharacterized protein LOC100242330 [Vitis vinifera]
gi|296087711|emb|CBI34967.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 115/170 (67%), Positives = 135/170 (79%)
Query: 40 AAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDG 99
A G S S N QR H ++C+ Q++ NC+S L+FDGASKGNPGQAGAGAVLRA+DG
Sbjct: 115 AVGPKSISTNCQRKHSRLENCIEAQAMSSNCHSWLLQFDGASKGNPGQAGAGAVLRADDG 174
Query: 100 SVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQ 159
S V LREGVGIATNNVAEYRALILG+KYAL+KG K IR +GDS+LVCMQ QGLWK NQ
Sbjct: 175 SAVIHLREGVGIATNNVAEYRALILGMKYALKKGIKRIRARGDSQLVCMQFQGLWKTKNQ 234
Query: 160 NLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAE 209
N+A LC+EAKEL +KF SFQI H+LR NSEADAQAN+ + L +GQV+ E
Sbjct: 235 NMADLCEEAKELGKKFLSFQIEHVLREFNSEADAQANLAVNLTNGQVQEE 284
>gi|365222890|gb|AEW69797.1| Hop-interacting protein THI034 [Solanum lycopersicum]
Length = 288
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/177 (62%), Positives = 135/177 (76%), Gaps = 5/177 (2%)
Query: 43 STSFSINTQRSHLNADSCLNTQSV-----PYNCYSCTLEFDGASKGNPGQAGAGAVLRAE 97
S SF+ Q+ D+ L + PY SC LEFDGASKGNPG AGAGAVLRA
Sbjct: 112 SPSFAAAGQQKLAKLDNFLEAPPISSYPSPYMQCSCILEFDGASKGNPGLAGAGAVLRAA 171
Query: 98 DGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKIN 157
DGS+V+RLREGVG+ATNNVAEYR +ILGL+YAL+KG+KHI+V+GDSKLVCMQ QG+WK
Sbjct: 172 DGSMVFRLREGVGVATNNVAEYRGVILGLRYALEKGFKHIKVKGDSKLVCMQTQGIWKCK 231
Query: 158 NQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAECSSFT 214
NQN+A L K KELK++F SFQINH+ R N+EADAQAN+ +YLK+G+++ EC T
Sbjct: 232 NQNMAELSKIVKELKDQFMSFQINHMDRESNTEADAQANLAVYLKNGEIQVECDMIT 288
>gi|255552696|ref|XP_002517391.1| nuclease, putative [Ricinus communis]
gi|223543402|gb|EEF44933.1| nuclease, putative [Ricinus communis]
Length = 255
Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/179 (64%), Positives = 136/179 (75%), Gaps = 6/179 (3%)
Query: 33 VPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGA 92
VP + A S ++N S ++ L + S SC LEFDGASKGNPG AGAGA
Sbjct: 81 VPCPFQQPAFSEGKALNKDSSPKSSRGVLGSMS------SCILEFDGASKGNPGPAGAGA 134
Query: 93 VLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQG 152
VLRAEDGS+V LREG+G ATNNVAEYRA+ILGLK+AL+KG+KHIRV+GDS LV MQI+G
Sbjct: 135 VLRAEDGSMVCLLREGLGTATNNVAEYRAVILGLKHALRKGFKHIRVRGDSNLVVMQIKG 194
Query: 153 LWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAECS 211
LWKI +QN+A LCKEAKELK KF SFQI H+LR NSEAD QAN+ + LKDGQ+E +CS
Sbjct: 195 LWKIKSQNVADLCKEAKELKNKFLSFQIEHVLREFNSEADTQANLAVNLKDGQIEEDCS 253
>gi|224077608|ref|XP_002305325.1| predicted protein [Populus trichocarpa]
gi|222848289|gb|EEE85836.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/147 (72%), Positives = 124/147 (84%), Gaps = 4/147 (2%)
Query: 64 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALI 123
+S+P SC LEFDGASKGNPG AGAGAVLRAEDGS+V RLREG+GIATNNVAEYRA++
Sbjct: 112 ESIP----SCILEFDGASKGNPGPAGAGAVLRAEDGSMVCRLREGLGIATNNVAEYRAVL 167
Query: 124 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 183
LGLK+AL+KG+K+I VQGDS LVCMQIQGLWK+ NQNLA LCKEAKELK+ F SFQI H+
Sbjct: 168 LGLKHALKKGFKYICVQGDSNLVCMQIQGLWKLKNQNLADLCKEAKELKDMFTSFQIKHV 227
Query: 184 LRNLNSEADAQANMGIYLKDGQVEAEC 210
R N EAD QAN+ L+DGQ+E +C
Sbjct: 228 PREFNFEADVQANLAANLRDGQIEEDC 254
>gi|449452100|ref|XP_004143798.1| PREDICTED: uncharacterized protein LOC101210930 [Cucumis sativus]
Length = 373
Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/175 (61%), Positives = 135/175 (77%), Gaps = 1/175 (0%)
Query: 33 VPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGA 92
VPEN V + T + R H+ + + + SV N SC LEFDGASKGNPGQAGAGA
Sbjct: 196 VPEN-VGSTVLTPTLKDPTRKHIKLEDSIVSHSVSSNRESCFLEFDGASKGNPGQAGAGA 254
Query: 93 VLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQG 152
VLRA DGSV+ RLREG+GIATNNVAEYRA++LGLK AL+KG+ I VQGDSKLVCMQ+QG
Sbjct: 255 VLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKSALKKGFTRIHVQGDSKLVCMQVQG 314
Query: 153 LWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVE 207
LWK ++N++ LC E +LK KF SF++NH+LR+LNSEADAQAN+ + L +G+V+
Sbjct: 315 LWKAKHENMSELCNEVTKLKNKFLSFEVNHVLRHLNSEADAQANLALTLAEGEVQ 369
>gi|255588182|ref|XP_002534525.1| nuclease, putative [Ricinus communis]
gi|223525106|gb|EEF27855.1| nuclease, putative [Ricinus communis]
Length = 262
Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/178 (60%), Positives = 134/178 (75%)
Query: 33 VPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGA 92
VP + GS S + R H D+ Q++ Y+ SC LEFDGASKGNPG AGAGA
Sbjct: 81 VPCPFQETDGSASGLTDPLRKHAKLDNQTEAQALYYDDDSCILEFDGASKGNPGPAGAGA 140
Query: 93 VLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQG 152
+LR DG ++ RLREG+G TNNVAEYRA+ILG+KYAL+KGY IRVQGDSKLVC Q+QG
Sbjct: 141 LLRTTDGRIICRLREGLGQVTNNVAEYRAMILGMKYALKKGYTKIRVQGDSKLVCSQVQG 200
Query: 153 LWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAEC 210
LWK+ ++++ L ++AK+LK+KF SFQI+H+LR LNSEADAQAN+ I L DGQV+ EC
Sbjct: 201 LWKVKHKDMTNLYEQAKQLKDKFASFQISHVLRALNSEADAQANLAIQLADGQVQEEC 258
>gi|224108115|ref|XP_002314727.1| predicted protein [Populus trichocarpa]
gi|222863767|gb|EEF00898.1| predicted protein [Populus trichocarpa]
Length = 282
Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 107/169 (63%), Positives = 129/169 (76%), Gaps = 4/169 (2%)
Query: 41 AGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGS 100
AGSTS H N D+ Q+ N SC LEFDGASKGNPGQAGAGAVLR +DGS
Sbjct: 116 AGSTSM----MSKHANLDTQAECQAQNSNSRSCLLEFDGASKGNPGQAGAGAVLRTDDGS 171
Query: 101 VVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQN 160
++ RLREG+GIATNN+AEYRA++LG+KYALQKGY I+V+GDSKLVCMQIQG WK + N
Sbjct: 172 LICRLREGLGIATNNMAEYRAILLGMKYALQKGYTKIQVKGDSKLVCMQIQGSWKAKHVN 231
Query: 161 LAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAE 209
+ LC EAK+LK F SF I+H+LR NSEADAQAN+ ++L DG+V+ E
Sbjct: 232 ITNLCTEAKKLKNSFLSFHISHVLREFNSEADAQANLAVHLADGEVQEE 280
>gi|356565894|ref|XP_003551171.1| PREDICTED: uncharacterized protein LOC100809644 [Glycine max]
Length = 345
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/139 (71%), Positives = 120/139 (86%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+C +EFDGASKGNPG+AGAGA+LRA DGS++ RLREGVGIATNN AEYRA+ILG+KYAL+
Sbjct: 206 TCFVEFDGASKGNPGKAGAGAILRANDGSLICRLREGVGIATNNAAEYRAMILGMKYALK 265
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
KG+ IR+QGDSKLVCMQI G WK+ N+NL+ L AKELK+KF SFQI+H+LRN NS+A
Sbjct: 266 KGFTGIRIQGDSKLVCMQIDGSWKVKNENLSTLYNVAKELKDKFSSFQISHVLRNFNSDA 325
Query: 192 DAQANMGIYLKDGQVEAEC 210
DAQAN+ I L DGQV+ EC
Sbjct: 326 DAQANLAINLADGQVQEEC 344
>gi|356550140|ref|XP_003543447.1| PREDICTED: uncharacterized protein LOC100796237 [Glycine max]
Length = 283
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/170 (66%), Positives = 131/170 (77%), Gaps = 6/170 (3%)
Query: 41 AGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGS 100
AGS S+ N+ R+H S Q+ +C SCTL FDGASKGNPG AGAGA+L DGS
Sbjct: 117 AGSFSYPPNSLRNHTLGGS----QAEWSSCLSCTLHFDGASKGNPGPAGAGAILH--DGS 170
Query: 101 VVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQN 160
VYRLREGVGI TNNVAEYR+LILGLK+AL+KGYKHI VQGDS LVC QIQGLWKI NQN
Sbjct: 171 KVYRLREGVGIQTNNVAEYRSLILGLKHALKKGYKHIIVQGDSLLVCNQIQGLWKIKNQN 230
Query: 161 LAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAEC 210
+ LC EAKELK+KF SF+I+HI R NSEADAQAN+ I L+ +V+ +C
Sbjct: 231 MGTLCAEAKELKDKFLSFKISHIPREYNSEADAQANLAINLRACEVQEDC 280
>gi|296086505|emb|CBI32094.3| unnamed protein product [Vitis vinifera]
Length = 445
Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 102/170 (60%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
Query: 38 VAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAE 97
V A S + + + H+ D + Q++ +C SC +EFDGASKGNPG AGA AVLR++
Sbjct: 257 VGAVESRPITTDPLKEHIKLDR-VEAQALFSDCRSCVVEFDGASKGNPGPAGAAAVLRSD 315
Query: 98 DGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKIN 157
G V+ R+REG+G+ATNNVAEY+A+ILGLKYAL+KGY IRVQGDSKLVCMQ+QGLWK
Sbjct: 316 SGRVICRVREGLGLATNNVAEYQAMILGLKYALKKGYTSIRVQGDSKLVCMQVQGLWKAR 375
Query: 158 NQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVE 207
N+N++ LCKEAK+LK +F S +INH+LR LNSEADAQAN+ ++L G+V+
Sbjct: 376 NKNMSILCKEAKKLKNEFLSVEINHVLRGLNSEADAQANLAVHLAVGEVQ 425
>gi|359473412|ref|XP_002266599.2| PREDICTED: uncharacterized protein LOC100255243 [Vitis vinifera]
Length = 453
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/172 (58%), Positives = 132/172 (76%), Gaps = 1/172 (0%)
Query: 33 VPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGA 92
+P + A S + + + H+ D + Q++ +C SC +EFDGASKGNPG AGA A
Sbjct: 81 MPCAFQGAVESRPITTDPLKEHIKLDR-VEAQALFSDCRSCVVEFDGASKGNPGPAGAAA 139
Query: 93 VLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQG 152
VLR++ G V+ R+REG+G+ATNNVAEY+A+ILGLKYAL+KGY IRVQGDSKLVCMQ+QG
Sbjct: 140 VLRSDSGRVICRVREGLGLATNNVAEYQAMILGLKYALKKGYTSIRVQGDSKLVCMQVQG 199
Query: 153 LWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDG 204
LWK N+N++ LCKEAK+LK +F S +INH+LR LNSEADAQAN+ ++L G
Sbjct: 200 LWKARNKNMSILCKEAKKLKNEFLSVEINHVLRGLNSEADAQANLAVHLAGG 251
>gi|356526860|ref|XP_003532034.1| PREDICTED: uncharacterized protein LOC100779114 [Glycine max]
Length = 356
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/139 (70%), Positives = 118/139 (84%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+C +EFDGASKGNPG+AGAGA+LRA DGS++ R+REGVGIATNN AEYRA+ILG+KYAL+
Sbjct: 217 TCFVEFDGASKGNPGKAGAGAILRANDGSLICRVREGVGIATNNAAEYRAMILGMKYALK 276
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
KG+ I +QGDSKLVCMQI G WK+ N+NL L AKELK+KF SFQI+H+LRN NS+A
Sbjct: 277 KGFTGICIQGDSKLVCMQIDGSWKVKNENLFTLYNVAKELKDKFSSFQISHVLRNFNSDA 336
Query: 192 DAQANMGIYLKDGQVEAEC 210
DAQAN+ I L DGQV+ EC
Sbjct: 337 DAQANLAINLVDGQVQEEC 355
>gi|388511545|gb|AFK43834.1| unknown [Lotus japonicus]
Length = 170
Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 96/136 (70%), Positives = 115/136 (84%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
SC LEFDGAS+GNPG AGAGAVLRA+DGS VYRLREGVGI TNN AEYR LILGLK+A+Q
Sbjct: 27 SCILEFDGASRGNPGPAGAGAVLRAKDGSKVYRLREGVGIQTNNFAEYRGLILGLKHAIQ 86
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+GY+HI V+GDS LVC Q+QG+W+INNQN+A LC E KEL+ +F SF+I+HI R N EA
Sbjct: 87 EGYEHIDVKGDSMLVCNQVQGVWRINNQNMAYLCNEVKELRNRFLSFKISHIPREYNYEA 146
Query: 192 DAQANMGIYLKDGQVE 207
D +AN+G+ L+ GQVE
Sbjct: 147 DVEANLGVNLRAGQVE 162
>gi|449459420|ref|XP_004147444.1| PREDICTED: uncharacterized protein LOC101219107 [Cucumis sativus]
gi|449517156|ref|XP_004165612.1| PREDICTED: uncharacterized LOC101219107 [Cucumis sativus]
Length = 255
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/140 (70%), Positives = 114/140 (81%)
Query: 71 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL 130
Y+ LEFDGASKGNPG AGAGAVLRA DGS V +L+EGVGIAT NVAEYRA+ILGLK+AL
Sbjct: 113 YTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGIATCNVAEYRAVILGLKHAL 172
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ G KHIRVQGDSKLVCMQ+QGLWK+ N N+A CK AKELK+KF SF+I+H R NS+
Sbjct: 173 KNGIKHIRVQGDSKLVCMQVQGLWKLKNPNMAKFCKVAKELKDKFVSFEISHFPRKQNSD 232
Query: 191 ADAQANMGIYLKDGQVEAEC 210
ADA AN I L+DG V +C
Sbjct: 233 ADALANCAIRLQDGVVVEDC 252
>gi|388490516|gb|AFK33324.1| unknown [Lotus japonicus]
Length = 167
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/139 (70%), Positives = 111/139 (79%), Gaps = 1/139 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
SCTLEFDG+SKGNPG AGAGAVLRAEDGS VY LREGVG TNN AEYR LILGLK+A +
Sbjct: 27 SCTLEFDGSSKGNPGSAGAGAVLRAEDGSKVY-LREGVGNQTNNQAEYRGLILGLKHAHE 85
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+GY+HI V+GDS+LVC Q++G WK N N+A LC EAKELK KFQSF INH+ R NSEA
Sbjct: 86 QGYQHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHVPRQYNSEA 145
Query: 192 DAQANMGIYLKDGQVEAEC 210
D QAN+G+ L G VE C
Sbjct: 146 DVQANLGVNLPAGHVEEYC 164
>gi|224102015|ref|XP_002312512.1| predicted protein [Populus trichocarpa]
gi|222852332|gb|EEE89879.1| predicted protein [Populus trichocarpa]
Length = 317
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/144 (65%), Positives = 118/144 (81%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+ Y+ SC LEFDGASKGNPGQAGAGAVLR +DGS++ RLREG+GIATNN+AEYRA++LG
Sbjct: 172 IFYSQKSCLLEFDGASKGNPGQAGAGAVLRNDDGSLICRLREGLGIATNNMAEYRAILLG 231
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
+KYAL+KGY I V+GDSKLVCMQI+G WK ++N+ L +EAK+LK F SF I+H+ R
Sbjct: 232 MKYALEKGYTKIHVKGDSKLVCMQIEGSWKARHENITNLYEEAKKLKNSFLSFHISHVPR 291
Query: 186 NLNSEADAQANMGIYLKDGQVEAE 209
NSEAD+QAN+ I L DG+V+ E
Sbjct: 292 EYNSEADSQANLAIKLADGEVQEE 315
>gi|242081781|ref|XP_002445659.1| hypothetical protein SORBIDRAFT_07g023590 [Sorghum bicolor]
gi|241942009|gb|EES15154.1| hypothetical protein SORBIDRAFT_07g023590 [Sorghum bicolor]
Length = 268
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/154 (62%), Positives = 120/154 (77%), Gaps = 1/154 (0%)
Query: 61 LNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYR 120
++ Q +P + SC LEFDGASKGNPG+AGAGA++R DGSV+ +LREG+GIATNN AEYR
Sbjct: 115 VDEQELPDSHLSCILEFDGASKGNPGKAGAGAIIRRIDGSVIAQLREGLGIATNNAAEYR 174
Query: 121 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 180
ALILGL YA +KG+K+IR QGDSKLVC Q+Q LW++ N+N+AGLCK+ K LK F FQI
Sbjct: 175 ALILGLTYAAKKGFKYIRAQGDSKLVCNQVQDLWRVKNENMAGLCKKVKVLKGTFHLFQI 234
Query: 181 NHILRNLNSEADAQANMGIYLKDGQVEAECSSFT 214
H+LR NS ADAQAN + L G+V+ E S+F
Sbjct: 235 RHVLREYNSAADAQANFAVELPVGEVQ-EQSNFP 267
>gi|357144247|ref|XP_003573224.1| PREDICTED: uncharacterized protein LOC100841248 [Brachypodium
distachyon]
Length = 352
Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/151 (60%), Positives = 119/151 (78%), Gaps = 1/151 (0%)
Query: 64 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALI 123
+ +P N SC LEFDGA KGNPG++GAG V+R DGSV+ LREG+GIATNN AEYRAL+
Sbjct: 202 EPLPDNHLSCILEFDGACKGNPGKSGAGVVVRRPDGSVIAHLREGLGIATNNAAEYRALL 261
Query: 124 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 183
LGL+YA +KG+K+IR QGDSKLVC Q+Q LW++ N N+A LCK+ KELK +F SFQ+NH+
Sbjct: 262 LGLRYAAKKGFKYIRAQGDSKLVCYQVQDLWRVKNDNMADLCKKVKELKGQFLSFQLNHV 321
Query: 184 LRNLNSEADAQANMGIYLKDGQVEAECSSFT 214
LR N++ADAQAN + L G+++ E S+F
Sbjct: 322 LREFNADADAQANFAVELPVGEIQ-EQSNFP 351
>gi|194700066|gb|ACF84117.1| unknown [Zea mays]
gi|219887863|gb|ACL54306.1| unknown [Zea mays]
gi|413921720|gb|AFW61652.1| putative rnase H family protein isoform 1 [Zea mays]
gi|413921721|gb|AFW61653.1| putative rnase H family protein isoform 2 [Zea mays]
Length = 269
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 121/172 (70%), Gaps = 4/172 (2%)
Query: 43 STSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVV 102
S I + H D + +P + SC LEFDGASKGNPG+AGAGA++R DGSV+
Sbjct: 101 SQEIEIGPSKKHPKVDEQV---PLPDSHLSCILEFDGASKGNPGKAGAGAIIRQVDGSVI 157
Query: 103 YRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLA 162
+LREG+GIATNN AEYRALILGL YA +KG+K+IR QGDSKLVC Q+Q +W++ N N+A
Sbjct: 158 AQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQVQDIWRVKNDNMA 217
Query: 163 GLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAECSSFT 214
CK+ KELK F FQI H+LR NS ADAQAN + L G+V+ E S+F
Sbjct: 218 SFCKKVKELKGTFHLFQIRHVLREYNSAADAQANFAVELPVGEVQ-EQSNFP 268
>gi|195627916|gb|ACG35788.1| retrotransposon protein Ty3-gypsy subclass [Zea mays]
gi|238009648|gb|ACR35859.1| unknown [Zea mays]
gi|413921724|gb|AFW61656.1| putative rnase H family protein [Zea mays]
Length = 336
Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 121/172 (70%), Gaps = 4/172 (2%)
Query: 43 STSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVV 102
S I + H D + +P + SC LEFDGASKGNPG+AGAGA++R DGSV+
Sbjct: 168 SQEIEIGPSKKHPKVDEQV---PLPDSHLSCILEFDGASKGNPGKAGAGAIIRQVDGSVI 224
Query: 103 YRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLA 162
+LREG+GIATNN AEYRALILGL YA +KG+K+IR QGDSKLVC Q+Q +W++ N N+A
Sbjct: 225 AQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQVQDIWRVKNDNMA 284
Query: 163 GLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAECSSFT 214
CK+ KELK F FQI H+LR NS ADAQAN + L G+V+ E S+F
Sbjct: 285 SFCKKVKELKGTFHLFQIRHVLREYNSAADAQANFAVELPVGEVQ-EQSNFP 335
>gi|226495263|ref|NP_001141955.1| uncharacterized protein LOC100274104 [Zea mays]
gi|194706572|gb|ACF87370.1| unknown [Zea mays]
gi|413921719|gb|AFW61651.1| putative rnase H family protein [Zea mays]
Length = 192
Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 121/172 (70%), Gaps = 4/172 (2%)
Query: 43 STSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVV 102
S I + H D + +P + SC LEFDGASKGNPG+AGAGA++R DGSV+
Sbjct: 24 SQEIEIGPSKKHPKVDEQV---PLPDSHLSCILEFDGASKGNPGKAGAGAIIRQVDGSVI 80
Query: 103 YRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLA 162
+LREG+GIATNN AEYRALILGL YA +KG+K+IR QGDSKLVC Q+Q +W++ N N+A
Sbjct: 81 AQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQVQDIWRVKNDNMA 140
Query: 163 GLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAECSSFT 214
CK+ KELK F FQI H+LR NS ADAQAN + L G+V+ E S+F
Sbjct: 141 SFCKKVKELKGTFHLFQIRHVLREYNSAADAQANFAVELPVGEVQ-EQSNFP 191
>gi|34146846|gb|AAQ62431.1| At3g01410 [Arabidopsis thaliana]
gi|51970934|dbj|BAD44159.1| putative RNase H [Arabidopsis thaliana]
Length = 294
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 109/136 (80%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
SCT+EFDGASKGNPG+AGAGAVLRA D SV++ LREGVG ATNNVAEYRAL+LGL+ AL
Sbjct: 154 SCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALD 213
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
KG+K++ V GDS LVCMQ+QG WK N+ +A LCK+AKEL F++F I HI R NSEA
Sbjct: 214 KGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEA 273
Query: 192 DAQANMGIYLKDGQVE 207
D QAN I+L DGQ +
Sbjct: 274 DKQANSAIFLADGQTQ 289
>gi|30678332|ref|NP_186790.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|145331720|ref|NP_001078087.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332640141|gb|AEE73662.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332640142|gb|AEE73663.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 294
Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 109/136 (80%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
SCT+EFDGASKGNPG+AGAGAVLRA D SV++ LREGVG ATNNVAEYRAL+LGL+ AL
Sbjct: 154 SCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALD 213
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
KG+K++ V GDS LVCMQ+QG WK N+ +A LCK+AKEL F++F I HI R NSEA
Sbjct: 214 KGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEA 273
Query: 192 DAQANMGIYLKDGQVE 207
D QAN I+L DGQ +
Sbjct: 274 DKQANSAIFLADGQTQ 289
>gi|6692261|gb|AAF24611.1|AC010870_4 putative RNase H [Arabidopsis thaliana]
Length = 290
Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 109/136 (80%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
SCT+EFDGASKGNPG+AGAGAVLRA D SV++ LREGVG ATNNVAEYRAL+LGL+ AL
Sbjct: 150 SCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALD 209
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
KG+K++ V GDS LVCMQ+QG WK N+ +A LCK+AKEL F++F I HI R NSEA
Sbjct: 210 KGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEA 269
Query: 192 DAQANMGIYLKDGQVE 207
D QAN I+L DGQ +
Sbjct: 270 DKQANSAIFLADGQTQ 285
>gi|413921723|gb|AFW61655.1| putative rnase H family protein [Zea mays]
Length = 262
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 118/172 (68%), Gaps = 11/172 (6%)
Query: 43 STSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVV 102
S I + H D L SC LEFDGASKGNPG+AGAGA++R DGSV+
Sbjct: 101 SQEIEIGPSKKHPKVDEQL----------SCILEFDGASKGNPGKAGAGAIIRQVDGSVI 150
Query: 103 YRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLA 162
+LREG+GIATNN AEYRALILGL YA +KG+K+IR QGDSKLVC Q+Q +W++ N N+A
Sbjct: 151 AQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQVQDIWRVKNDNMA 210
Query: 163 GLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAECSSFT 214
CK+ KELK F FQI H+LR NS ADAQAN + L G+V+ E S+F
Sbjct: 211 SFCKKVKELKGTFHLFQIRHVLREYNSAADAQANFAVELPVGEVQ-EQSNFP 261
>gi|334182806|ref|NP_173819.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332192355|gb|AEE30476.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 353
Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/136 (65%), Positives = 116/136 (85%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+C +EFDGASKGNPG +GA AVL+ EDGS++ R+R+G+GIATNN AEY ALILGLKYA++
Sbjct: 216 TCFIEFDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIE 275
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
KGYK+I+V+GDSKLVCMQI+G WK+N++ LA L KEAK L K SF+I+H+LRNLN++A
Sbjct: 276 KGYKNIKVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLNADA 335
Query: 192 DAQANMGIYLKDGQVE 207
D QAN+ + L +G+VE
Sbjct: 336 DEQANLAVRLPEGEVE 351
>gi|357123204|ref|XP_003563302.1| PREDICTED: uncharacterized protein LOC100831320 [Brachypodium
distachyon]
Length = 349
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/151 (58%), Positives = 117/151 (77%), Gaps = 1/151 (0%)
Query: 64 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALI 123
+ +P + SC LEFDGA KGNPG++GAG V+R DGSV+ +LREG+GIATNN AEYRAL+
Sbjct: 199 EPLPNSHLSCILEFDGACKGNPGKSGAGVVVRRPDGSVIAQLREGLGIATNNAAEYRALL 258
Query: 124 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 183
LGL+YA KG+K+IR QGDSKLVC Q+Q +W+ N N+A LCK+ KELK +F FQ+NH+
Sbjct: 259 LGLRYAANKGFKYIRAQGDSKLVCNQVQNVWRARNDNMADLCKKVKELKGRFLVFQVNHV 318
Query: 184 LRNLNSEADAQANMGIYLKDGQVEAECSSFT 214
LR N++ADAQAN + L G+++ E S+F
Sbjct: 319 LREFNADADAQANFAVELPAGEIQ-EQSNFP 348
>gi|326499834|dbj|BAJ90752.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 347
Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 118/151 (78%), Gaps = 1/151 (0%)
Query: 64 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALI 123
+ +P + SC LEFDGA KGNPG++GAG V+R DG+++ +LREG+GIATNN AEYRAL+
Sbjct: 197 EPLPDSHLSCILEFDGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNNAAEYRALL 256
Query: 124 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 183
LGL+YA +KG+K++R QGDSKLVC Q+Q LW++ N N+A LCK+ K+LK F FQINH+
Sbjct: 257 LGLRYAAKKGFKYVRAQGDSKLVCNQVQDLWRVRNDNMADLCKKVKDLKGSFLQFQINHV 316
Query: 184 LRNLNSEADAQANMGIYLKDGQVEAECSSFT 214
LR N++ADAQAN + L G+++ E S+F
Sbjct: 317 LREFNADADAQANFAVELPVGEIQ-EQSNFP 346
>gi|326488477|dbj|BAJ93907.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 118/151 (78%), Gaps = 1/151 (0%)
Query: 64 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALI 123
+ +P + SC LEFDGA KGNPG++GAG V+R DG+++ +LREG+GIATNN AEYRAL+
Sbjct: 116 EPLPDSHLSCILEFDGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNNAAEYRALL 175
Query: 124 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 183
LGL+YA +KG+K++R QGDSKLVC Q+Q LW++ N N+A LCK+ K+LK F FQINH+
Sbjct: 176 LGLRYAAKKGFKYVRAQGDSKLVCNQVQDLWRVRNDNMADLCKKVKDLKGSFLQFQINHV 235
Query: 184 LRNLNSEADAQANMGIYLKDGQVEAECSSFT 214
LR N++ADAQAN + L G+++ E S+F
Sbjct: 236 LREFNADADAQANFAVELPVGEIQ-EQSNFP 265
>gi|326505852|dbj|BAJ91165.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 118/151 (78%), Gaps = 1/151 (0%)
Query: 64 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALI 123
+ +P + SC LEFDGA KGNPG++GAG V+R DG+++ +LREG+GIATNN AEYRAL+
Sbjct: 116 EPLPDSHLSCILEFDGACKGNPGKSGAGVVVRRSDGAMIAQLREGLGIATNNAAEYRALL 175
Query: 124 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 183
LGL+YA +KG+K++R QGDSKLVC Q+Q LW++ N N+A LCK+ K+LK F FQINH+
Sbjct: 176 LGLRYAAKKGFKYVRAQGDSKLVCNQVQDLWRVRNDNMADLCKKVKDLKGSFLQFQINHV 235
Query: 184 LRNLNSEADAQANMGIYLKDGQVEAECSSFT 214
LR N++ADAQAN + L G+++ E S+F
Sbjct: 236 LREFNADADAQANFAVELPVGEIQ-EQSNFP 265
>gi|38636806|dbj|BAD03047.1| putative RNase H domain-containing protein [Oryza sativa Japonica
Group]
gi|38636983|dbj|BAD03243.1| putative RNase H domain-containing protein [Oryza sativa Japonica
Group]
gi|125560347|gb|EAZ05795.1| hypothetical protein OsI_28030 [Oryza sativa Indica Group]
gi|125602385|gb|EAZ41710.1| hypothetical protein OsJ_26246 [Oryza sativa Japonica Group]
Length = 351
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/146 (58%), Positives = 114/146 (78%)
Query: 64 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALI 123
+ +P + SC LEFDGASKGNPG+AGAGAV+R DG+V+ +LREG+GIATNN AEYRALI
Sbjct: 197 EPLPNSSLSCLLEFDGASKGNPGKAGAGAVIRRLDGTVIAQLREGLGIATNNAAEYRALI 256
Query: 124 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 183
LGL YA +KG+K+IR QGDSKLVC Q+ +W+ + +A LCK KE+K +F +FQINH+
Sbjct: 257 LGLTYAAKKGFKYIRAQGDSKLVCNQVSDVWRARHDTMADLCKRVKEIKGRFHTFQINHV 316
Query: 184 LRNLNSEADAQANMGIYLKDGQVEAE 209
LR N++ADAQAN+ + L ++ +E
Sbjct: 317 LREFNTDADAQANLAVELPGEKLLSE 342
>gi|218184677|gb|EEC67104.1| hypothetical protein OsI_33899 [Oryza sativa Indica Group]
Length = 323
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 112/156 (71%)
Query: 54 HLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIAT 113
+L+ ++ Q + C L FDGASKGNPG+AGAGAVL EDG V+ RLREG+GI T
Sbjct: 164 NLDQSGTVDAQPLSKQYMVCLLHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVT 223
Query: 114 NNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKE 173
NNVAEYR LILGL+YA++ G+K I V GDS+LVC Q++G W+ NQN+ LCKE ++LKE
Sbjct: 224 NNVAEYRGLILGLRYAIRHGFKKIIVYGDSQLVCYQVKGTWQTKNQNMMELCKEVRKLKE 283
Query: 174 KFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAE 209
F SF+INHI R N+EAD QAN+ I L G V E
Sbjct: 284 NFVSFEINHIRREWNAEADRQANIAITLSSGVVSEE 319
>gi|115482348|ref|NP_001064767.1| Os10g0458700 [Oryza sativa Japonica Group]
gi|78708782|gb|ABB47757.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
gi|113639376|dbj|BAF26681.1| Os10g0458700 [Oryza sativa Japonica Group]
gi|222612954|gb|EEE51086.1| hypothetical protein OsJ_31786 [Oryza sativa Japonica Group]
Length = 323
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 112/156 (71%)
Query: 54 HLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIAT 113
+L+ ++ Q + C L FDGASKGNPG+AGAGAVL EDG V+ RLREG+GI T
Sbjct: 164 NLDQSGTVDAQPLSKQYMVCLLHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVT 223
Query: 114 NNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKE 173
NNVAEYR LILGL+YA++ G+K I V GDS+LVC Q++G W+ NQN+ LCKE ++LKE
Sbjct: 224 NNVAEYRGLILGLRYAIRHGFKKIIVYGDSQLVCYQVKGTWQTKNQNMMELCKEVRKLKE 283
Query: 174 KFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAE 209
F SF+INHI R N+EAD QAN+ I L G V E
Sbjct: 284 NFVSFEINHIRREWNAEADRQANIAITLSSGVVSEE 319
>gi|14140290|gb|AAK54296.1|AC034258_14 putative RNase [Oryza sativa Japonica Group]
Length = 289
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 112/156 (71%)
Query: 54 HLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIAT 113
+L+ ++ Q + C L FDGASKGNPG+AGAGAVL EDG V+ RLREG+GI T
Sbjct: 130 NLDQSGTVDAQPLSKQYMVCLLHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVT 189
Query: 114 NNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKE 173
NNVAEYR LILGL+YA++ G+K I V GDS+LVC Q++G W+ NQN+ LCKE ++LKE
Sbjct: 190 NNVAEYRGLILGLRYAIRHGFKKIIVYGDSQLVCYQVKGTWQTKNQNMMELCKEVRKLKE 249
Query: 174 KFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAE 209
F SF+INHI R N+EAD QAN+ I L G V E
Sbjct: 250 NFVSFEINHIRREWNAEADRQANIAITLSSGVVSEE 285
>gi|30695999|ref|NP_199921.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|79330542|ref|NP_001032053.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|29028872|gb|AAO64815.1| At5g51080 [Arabidopsis thaliana]
gi|110743039|dbj|BAE99412.1| hypothetical protein [Arabidopsis thaliana]
gi|222424417|dbj|BAH20164.1| AT5G51080 [Arabidopsis thaliana]
gi|332008647|gb|AED96030.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332008648|gb|AED96031.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 322
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/137 (60%), Positives = 114/137 (83%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+C +EFDGASKGNPG +GA AVL+ EDGS+++++R+G+GIATNN AEY LILGLK+A++
Sbjct: 185 TCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIE 244
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
KGY I+V+ DSKLVCMQ++G WK+N++ L+ L KEAK+L +K SF+I+H+LR+LNS+A
Sbjct: 245 KGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDA 304
Query: 192 DAQANMGIYLKDGQVEA 208
D QANM L +G+VE
Sbjct: 305 DEQANMAARLSEGEVEV 321
>gi|242089145|ref|XP_002440405.1| hypothetical protein SORBIDRAFT_09g000480 [Sorghum bicolor]
gi|241945690|gb|EES18835.1| hypothetical protein SORBIDRAFT_09g000480 [Sorghum bicolor]
Length = 341
Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/146 (59%), Positives = 111/146 (76%)
Query: 62 NTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRA 121
+ +++P + SC LEFDGA KGNPG++GAG ++R DGSV+ LREG+GI TNN AEYRA
Sbjct: 191 DLETLPDSELSCILEFDGACKGNPGKSGAGVIIRRLDGSVIALLREGLGIMTNNAAEYRA 250
Query: 122 LILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQIN 181
LILGL YA +KG+K+IR QGDSKLVC Q++G W+ + N+A LC AKELKE F +FQIN
Sbjct: 251 LILGLNYASKKGFKYIRCQGDSKLVCNQVRGDWRARSDNMAVLCDIAKELKETFLTFQIN 310
Query: 182 HILRNLNSEADAQANMGIYLKDGQVE 207
H+LR NS+AD QAN G L +V+
Sbjct: 311 HVLREFNSDADVQANFGAQLAVDEVQ 336
>gi|79330550|ref|NP_001032054.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|222424272|dbj|BAH20093.1| AT5G51080 [Arabidopsis thaliana]
gi|332008649|gb|AED96032.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 259
Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 83/137 (60%), Positives = 114/137 (83%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+C +EFDGASKGNPG +GA AVL+ EDGS+++++R+G+GIATNN AEY LILGLK+A++
Sbjct: 122 TCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIE 181
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
KGY I+V+ DSKLVCMQ++G WK+N++ L+ L KEAK+L +K SF+I+H+LR+LNS+A
Sbjct: 182 KGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDA 241
Query: 192 DAQANMGIYLKDGQVEA 208
D QANM L +G+VE
Sbjct: 242 DEQANMAARLSEGEVEV 258
>gi|223949765|gb|ACN28966.1| unknown [Zea mays]
gi|413942425|gb|AFW75074.1| putative rnase H family protein [Zea mays]
Length = 331
Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 87/146 (59%), Positives = 110/146 (75%)
Query: 62 NTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRA 121
+ + +P + SC LEFDGA KGNPG++GAG ++R DGSV+ LREG+GI TNN AEYRA
Sbjct: 182 DLEPLPDSELSCILEFDGACKGNPGKSGAGVIIRRLDGSVIAVLREGLGIMTNNAAEYRA 241
Query: 122 LILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQIN 181
LILGL YA +KG+K+IR QGDSKLVC Q+QG W+ + N++ LC AKELKE F +FQIN
Sbjct: 242 LILGLNYASKKGFKYIRCQGDSKLVCNQVQGAWRARSDNMSILCDIAKELKETFLTFQIN 301
Query: 182 HILRNLNSEADAQANMGIYLKDGQVE 207
H+LR NS+AD QAN G L +V+
Sbjct: 302 HVLREFNSDADVQANFGCQLAVDEVQ 327
>gi|226532456|ref|NP_001145250.1| uncharacterized protein LOC100278534 [Zea mays]
gi|195653679|gb|ACG46307.1| hypothetical protein [Zea mays]
Length = 276
Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 87/146 (59%), Positives = 110/146 (75%)
Query: 62 NTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRA 121
+ + +P + SC LEFDGA KGNPG++GAG ++R DGSV+ LREG+GI TNN AEYRA
Sbjct: 127 DLEPLPDSELSCILEFDGACKGNPGKSGAGVIIRRLDGSVIAVLREGLGIMTNNAAEYRA 186
Query: 122 LILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQIN 181
LILGL YA +KG+K+IR QGDSKLVC Q+QG W+ + N++ LC AKELKE F +FQIN
Sbjct: 187 LILGLNYASKKGFKYIRCQGDSKLVCNQVQGAWRARSDNMSILCDIAKELKETFLTFQIN 246
Query: 182 HILRNLNSEADAQANMGIYLKDGQVE 207
H+LR NS+AD QAN G L +V+
Sbjct: 247 HVLREFNSDADVQANFGCQLAVDEVQ 272
>gi|326490670|dbj|BAJ90002.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 324
Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 111/155 (71%)
Query: 55 LNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATN 114
LN + Q V C + FDGASKGNPG++GAGAVL EDG V+ RLREG+G+ATN
Sbjct: 165 LNHTGAFDAQPVSKQYMVCVVHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATN 224
Query: 115 NVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEK 174
NVAEYR LILGLKYA++ G+K I+V GDS+LVC Q++G W+ +N+ LCKE ++L+E
Sbjct: 225 NVAEYRGLILGLKYAIRLGFKRIKVYGDSQLVCYQVKGTWQAKKENMMELCKEVRKLQEN 284
Query: 175 FQSFQINHILRNLNSEADAQANMGIYLKDGQVEAE 209
F SF+++H+ R NSEAD QAN+ I L G V E
Sbjct: 285 FISFEVHHVRREWNSEADRQANIAITLASGAVSEE 319
>gi|326494200|dbj|BAJ90369.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 280
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 111/155 (71%)
Query: 55 LNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATN 114
LN + Q V C + FDGASKGNPG++GAGAVL EDG V+ RLREG+G+ATN
Sbjct: 121 LNHTGAFDAQPVSKQYMVCVVHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATN 180
Query: 115 NVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEK 174
NVAEYR LILGLKYA++ G+K I+V GDS+LVC Q++G W+ +N+ LCKE ++L+E
Sbjct: 181 NVAEYRGLILGLKYAIRLGFKRIKVYGDSQLVCYQVKGTWQAKKENMMELCKEVRKLQEN 240
Query: 175 FQSFQINHILRNLNSEADAQANMGIYLKDGQVEAE 209
F SF+++H+ R NSEAD QAN+ I L G V E
Sbjct: 241 FISFEVHHVRREWNSEADRQANIAITLASGAVSEE 275
>gi|194699332|gb|ACF83750.1| unknown [Zea mays]
Length = 292
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 115/166 (69%)
Query: 44 TSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVY 103
+S S + ++ N ++ Q + L FDGASKGNPG+AGAGAVL EDG V+
Sbjct: 123 SSSSRHISPANFNHTGTVDAQPISKQYMVGILHFDGASKGNPGKAGAGAVLMTEDGRVIS 182
Query: 104 RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAG 163
RLREG+G+ATNNVAEYR LILGLKYA++ G+K I+V GDS+LVC Q+ G+W+ N+
Sbjct: 183 RLREGLGVATNNVAEYRGLILGLKYAIRHGFKRIKVHGDSQLVCNQVNGVWQTKQPNMME 242
Query: 164 LCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAE 209
LC EA++LKE F SF+I H+ R N+EAD QAN+GI L G V E
Sbjct: 243 LCTEARKLKENFHSFEIIHVRREWNAEADRQANIGITLASGAVFEE 288
>gi|212275993|ref|NP_001130760.1| uncharacterized protein LOC100191864 [Zea mays]
gi|194690044|gb|ACF79106.1| unknown [Zea mays]
Length = 292
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 115/166 (69%)
Query: 44 TSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVY 103
+S S + ++ N ++ Q + L FDGASKGNPG+AGAGAVL EDG V+
Sbjct: 123 SSSSRHISPANFNHTGTVDAQPISKQYMVGILHFDGASKGNPGKAGAGAVLMTEDGRVIS 182
Query: 104 RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAG 163
RLREG+G+ATNNVAEYR LILGLKYA++ G+K I+V GDS+LVC Q+ G+W+ N+
Sbjct: 183 RLREGLGVATNNVAEYRGLILGLKYAIRHGFKRIKVHGDSQLVCNQVNGVWQTKQPNMME 242
Query: 164 LCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAE 209
LC EA++LKE F SF+I H+ R N+EAD QAN+GI L G V E
Sbjct: 243 LCTEARKLKENFHSFEIIHVRREWNAEADRQANIGITLASGAVFEE 288
>gi|357146482|ref|XP_003574008.1| PREDICTED: uncharacterized protein LOC100824410 isoform 2
[Brachypodium distachyon]
Length = 298
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
Query: 31 QSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGA 90
Q V NY A S+S + ++++ ++ Q V C + FDGASKGNPG++GA
Sbjct: 118 QLVDLNYEARPMSSS---HLSPNNISYSGAVDAQPVSKQYMVCVIHFDGASKGNPGKSGA 174
Query: 91 GAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 150
GAVL EDG V+ RLREG+G+ATNNVAEYR LILGLKYA++ G+K I+V GDS+LVC Q+
Sbjct: 175 GAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIKHGFKRIKVYGDSQLVCYQV 234
Query: 151 QGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAE 209
+G W+ +N+ LCKE ++L+E F SF++NH+ R N+EAD QAN+ + L G V E
Sbjct: 235 KGTWQAKKENMMELCKEVRKLQENFISFEVNHVRREWNAEADRQANIALTLASGAVSEE 293
>gi|357146485|ref|XP_003574009.1| PREDICTED: uncharacterized protein LOC100824410 isoform 3
[Brachypodium distachyon]
Length = 280
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 116/162 (71%), Gaps = 5/162 (3%)
Query: 53 SHLNADS-----CLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE 107
SHL+ ++ ++ Q V C + FDGASKGNPG++GAGAVL EDG V+ RLRE
Sbjct: 114 SHLSPNNISYSGAVDAQPVSKQYMVCVIHFDGASKGNPGKSGAGAVLMTEDGRVISRLRE 173
Query: 108 GVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKE 167
G+G+ATNNVAEYR LILGLKYA++ G+K I+V GDS+LVC Q++G W+ +N+ LCKE
Sbjct: 174 GLGVATNNVAEYRGLILGLKYAIKHGFKRIKVYGDSQLVCYQVKGTWQAKKENMMELCKE 233
Query: 168 AKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAE 209
++L+E F SF++NH+ R N+EAD QAN+ + L G V E
Sbjct: 234 VRKLQENFISFEVNHVRREWNAEADRQANIALTLASGAVSEE 275
>gi|357146480|ref|XP_003574007.1| PREDICTED: uncharacterized protein LOC100824410 isoform 1
[Brachypodium distachyon]
Length = 319
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 116/162 (71%), Gaps = 5/162 (3%)
Query: 53 SHLNADS-----CLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE 107
SHL+ ++ ++ Q V C + FDGASKGNPG++GAGAVL EDG V+ RLRE
Sbjct: 153 SHLSPNNISYSGAVDAQPVSKQYMVCVIHFDGASKGNPGKSGAGAVLMTEDGRVISRLRE 212
Query: 108 GVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKE 167
G+G+ATNNVAEYR LILGLKYA++ G+K I+V GDS+LVC Q++G W+ +N+ LCKE
Sbjct: 213 GLGVATNNVAEYRGLILGLKYAIKHGFKRIKVYGDSQLVCYQVKGTWQAKKENMMELCKE 272
Query: 168 AKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAE 209
++L+E F SF++NH+ R N+EAD QAN+ + L G V E
Sbjct: 273 VRKLQENFISFEVNHVRREWNAEADRQANIALTLASGAVSEE 314
>gi|297845448|ref|XP_002890605.1| RNase H domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297336447|gb|EFH66864.1| RNase H domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 536
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/133 (65%), Positives = 111/133 (83%), Gaps = 3/133 (2%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+C +EFDGASKGNPG +GA AVL+ EDGS++ RLR+G+GIATNN AEY ALILGLKYA++
Sbjct: 217 TCFIEFDGASKGNPGLSGAAAVLKTEDGSLICRLRQGLGIATNNAAEYHALILGLKYAIE 276
Query: 132 KGYKHIRVQGDSKLVCM---QIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
KGYK I+V+GDSKLVCM QI+G WK+N++ LA L KEAK+L K SF+I+H+LRNLN
Sbjct: 277 KGYKKIKVKGDSKLVCMQKQQIKGQWKVNHEVLAKLHKEAKQLCNKCVSFEISHVLRNLN 336
Query: 189 SEADAQANMGIYL 201
++AD QAN+ + L
Sbjct: 337 ADADEQANLAVRL 349
>gi|171921105|gb|ACB59203.1| RNase H domain-containing protein [Brassica oleracea]
Length = 492
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 114/144 (79%), Gaps = 1/144 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+C +EFDGASKGNPG +GA AVL+ EDGS++ ++R+G+GIATNN AEY LILGLK+A++
Sbjct: 158 TCFIEFDGASKGNPGLSGAAAVLKTEDGSLICKVRQGLGIATNNAAEYHGLILGLKHAIE 217
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+GYK I+V+GDSKL+CMQI+G WK+NN+ L+ L +EAK+L + SF+I+H+LRNLNS A
Sbjct: 218 RGYKKIKVKGDSKLICMQIKGKWKVNNEVLSKLHEEAKQLTNECISFEISHVLRNLNSAA 277
Query: 192 DAQANMGIYLKDGQVEAECSSFTK 215
D QAN+ + L G VE TK
Sbjct: 278 DEQANLAVRLP-GNVERISRMLTK 300
>gi|414871215|tpg|DAA49772.1| TPA: putative rnase H family protein [Zea mays]
Length = 143
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 104/135 (77%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L FDGASKGNPG+AGAGAVL EDG V+ RLREG+G+ATNNVAEYR LILGLKYA++ G+
Sbjct: 5 LHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRHGF 64
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
K I+V GDS+LVC Q+ G+W+ N+ LC EA++LKE F SF+I H+ R N+EAD Q
Sbjct: 65 KRIKVHGDSQLVCNQVNGVWQTKQPNMMELCTEARKLKENFHSFEIIHVRREWNAEADRQ 124
Query: 195 ANMGIYLKDGQVEAE 209
AN+GI L G V E
Sbjct: 125 ANIGITLASGAVFEE 139
>gi|8843844|dbj|BAA97370.1| unnamed protein product [Arabidopsis thaliana]
Length = 316
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 109/130 (83%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+C +EFDGASKGNPG +GA AVL+ EDGS+++++R+G+GIATNN AEY LILGLK+A++
Sbjct: 185 TCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIE 244
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
KGY I+V+ DSKLVCMQ++G WK+N++ L+ L KEAK+L +K SF+I+H+LR+LNS+A
Sbjct: 245 KGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDA 304
Query: 192 DAQANMGIYL 201
D QANM L
Sbjct: 305 DEQANMAARL 314
>gi|297795913|ref|XP_002865841.1| hypothetical protein ARALYDRAFT_357356 [Arabidopsis lyrata subsp.
lyrata]
gi|297311676|gb|EFH42100.1| hypothetical protein ARALYDRAFT_357356 [Arabidopsis lyrata subsp.
lyrata]
Length = 322
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/127 (61%), Positives = 106/127 (83%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+C +EFDGASKGNPG +GA AVL+ EDGS++ ++R+G+GIATNN AEY LILGLK+A++
Sbjct: 191 TCIIEFDGASKGNPGLSGAAAVLKTEDGSLICKMRQGLGIATNNAAEYHGLILGLKHAIE 250
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
KGY I+V+ DSKLVCMQ++G WK+N++ L+ L KEAK+L ++ SF+I+ +LRNLNS+A
Sbjct: 251 KGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDQCLSFEISQVLRNLNSDA 310
Query: 192 DAQANMG 198
D QANM
Sbjct: 311 DEQANMA 317
>gi|9369399|gb|AAF87147.1|AC002423_12 T23E23.24 [Arabidopsis thaliana]
Length = 360
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 111/152 (73%), Gaps = 22/152 (14%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+C +EFDGASKGNPG +GA AVL+ EDGS++ R+R+G+GIATNN AEY ALILGLKYA++
Sbjct: 207 TCFIEFDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIE 266
Query: 132 KGYKHIRVQGDSKLVCM----------------------QIQGLWKINNQNLAGLCKEAK 169
KGYK+I+V+GDSKLVCM QI+G WK+N++ LA L KEAK
Sbjct: 267 KGYKNIKVKGDSKLVCMQVSLMNHIRFYLLTFSTLSEKQQIKGQWKVNHEVLAKLHKEAK 326
Query: 170 ELKEKFQSFQINHILRNLNSEADAQANMGIYL 201
L K SF+I+H+LRNLN++AD QAN+ + L
Sbjct: 327 LLCNKCVSFEISHVLRNLNADADEQANLAVRL 358
>gi|387169560|gb|AFJ66219.1| hypothetical protein 34G24.24 [Capsella rubella]
Length = 448
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 105/130 (80%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+C +EFDGASKGNPG +GA AVL+ EDGS + ++R+G+GIATNN AEY LILGLK+A++
Sbjct: 317 TCIVEFDGASKGNPGLSGAAAVLKTEDGSFICKMRQGLGIATNNAAEYHGLILGLKHAIE 376
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+GY+ I+V+GDSKLV MQ++G WK+N++ L+ L KEAK+L ++ SF+I+ + RNLNS+A
Sbjct: 377 RGYRKIKVKGDSKLVSMQMKGQWKVNHEVLSKLYKEAKQLSDQCVSFEISQVQRNLNSDA 436
Query: 192 DAQANMGIYL 201
D ANM L
Sbjct: 437 DELANMAARL 446
>gi|168049717|ref|XP_001777308.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671284|gb|EDQ57838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 283
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 87/128 (67%), Gaps = 2/128 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
+E+DGASKGNPG AGAGA++R DGSV LREG+G TNNVAEYRA ILGLK AL +G
Sbjct: 87 IEYDGASKGNPGPAGAGALVRGPDGSVFCELREGLGSVTNNVAEYRAFILGLKGALDRGI 146
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+RVQGDSKLVC Q+ G WK+N++ L L KEA+ L F+ + H+ N AD
Sbjct: 147 YRVRVQGDSKLVCQQVLGKWKVNDEGLLPLWKEAQMLMLNFREISVKHV--RFNPSADQL 204
Query: 195 ANMGIYLK 202
AN + L
Sbjct: 205 ANEAVSLP 212
>gi|302817304|ref|XP_002990328.1| hypothetical protein SELMODRAFT_131456 [Selaginella moellendorffii]
gi|302825346|ref|XP_002994296.1| hypothetical protein SELMODRAFT_138460 [Selaginella moellendorffii]
gi|300137827|gb|EFJ04640.1| hypothetical protein SELMODRAFT_138460 [Selaginella moellendorffii]
gi|300141890|gb|EFJ08597.1| hypothetical protein SELMODRAFT_131456 [Selaginella moellendorffii]
Length = 131
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 88/125 (70%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
+DGASKGNPG+AGAGA+LR GSV+ +L G+G ATNNVAEY ALILGL+ AL +
Sbjct: 1 YDGASKGNPGKAGAGALLRNPKGSVIEKLYMGLGTATNNVAEYEALILGLQAALDRNVTS 60
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I+V GDS LVC Q+ G W + ++ L L + + L +F +F I+H+ R +N+EADA AN
Sbjct: 61 IQVFGDSNLVCKQVAGEWAVRHEGLRALHAQVQALSMQFTTFSIHHVDREMNTEADALAN 120
Query: 197 MGIYL 201
GI L
Sbjct: 121 KGITL 125
>gi|413921722|gb|AFW61654.1| putative rnase H family protein [Zea mays]
Length = 205
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 79/108 (73%), Gaps = 3/108 (2%)
Query: 43 STSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVV 102
S I + H D + +P + SC LEFDGASKGNPG+AGAGA++R DGSV+
Sbjct: 101 SQEIEIGPSKKHPKVDEQV---PLPDSHLSCILEFDGASKGNPGKAGAGAIIRQVDGSVI 157
Query: 103 YRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 150
+LREG+GIATNN AEYRALILGL YA +KG+K+IR QGDSKLVC Q+
Sbjct: 158 AQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQV 205
>gi|387169510|gb|AFJ66171.1| hypothetical protein 11M19.15 [Arabidopsis halleri]
Length = 231
Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 86/133 (64%), Gaps = 28/133 (21%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKY 128
+C +C +EFDGASKGNPG +GA AVL+ EDGS+V ++R+G+GIATNN AEY LILGLK+
Sbjct: 125 SCETCIIEFDGASKGNPGLSGAAAVLKTEDGSLVCKMRQGLGIATNNAAEYHGLILGLKH 184
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A++KGY I+V+ DSKLVCMQ++ LC +NLN
Sbjct: 185 AIEKGYTKIKVKTDSKLVCMQVR----------LSLCN------------------KNLN 216
Query: 189 SEADAQANMGIYL 201
S+AD QANM L
Sbjct: 217 SDADEQANMAARL 229
>gi|412993526|emb|CCO14037.1| ribonuclease H [Bathycoccus prasinos]
Length = 383
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 117/242 (48%), Gaps = 53/242 (21%)
Query: 5 VAAAGSTSISINTQKRHFNEDNC----------------------WNTQ--------SVP 34
+AA +I NTQKR + ++ W T+ S P
Sbjct: 83 IAAEVRPTIPTNTQKRKAHTNSTKQTSITEYLDKNEEEFEDDDDGWTTEYEPMKPLSSPP 142
Query: 35 ENYVAAAGSTSFSINTQRSHLNADSCLNTQ-SVPYNCYSCTLEFDGASKGNPGQAGAGAV 93
A S NT+R LN + N + +VP+ LEFDGAS+GNPG AGAGA+
Sbjct: 143 AKRTTTARGKSNGNNTKRK-LNTSAKANAEENVPF-----VLEFDGASRGNPGPAGAGAL 196
Query: 94 LRAED----------------GSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
+RA G ++ + +G+AT N AEY ALI GLK A++ G + I
Sbjct: 197 IRAPRIPSDAREEEEEEEERCGEIIKEICTSLGVATVNEAEYHALITGLKAAIELGIEDI 256
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
RV+GDS L+ Q++G WK+ L L E E+K+KF+ F I H+ R N +ADA AN
Sbjct: 257 RVRGDSNLIVSQVKGDWKVKEPRLIPLHAECNEMKKKFRRFDIAHVRREFNKDADALANS 316
Query: 198 GI 199
I
Sbjct: 317 AI 318
>gi|308807192|ref|XP_003080907.1| putative RNase (ISS) [Ostreococcus tauri]
gi|116059368|emb|CAL55075.1| putative RNase (ISS) [Ostreococcus tauri]
Length = 342
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 85/127 (66%), Gaps = 2/127 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAE-DGSVVYRLREGVGIA-TNNVAEYRALILGLKYALQK 132
LEFDGAS+GNPG+AGAGA+LR + D VV L E +G T N AEY AL LGL+ A++
Sbjct: 205 LEFDGASRGNPGEAGAGALLRRKRDDRVVEELLEYLGSERTVNEAEYAALCLGLRKAIEL 264
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G I V+GDSKL+ Q+ G +K+ ++NL + EA LK+KF F+I+H+ R N AD
Sbjct: 265 GITKIEVRGDSKLIVNQVDGSFKLKSENLRSMHAEAVSLKKKFAEFKISHVKREFNKHAD 324
Query: 193 AQANMGI 199
ANM +
Sbjct: 325 HLANMAV 331
>gi|145349572|ref|XP_001419204.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579435|gb|ABO97497.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 126
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 84/125 (67%), Gaps = 2/125 (1%)
Query: 77 FDGASKGNPGQAGAGAVLRAE-DGSVVYRLREGVG-IATNNVAEYRALILGLKYALQKGY 134
FDGAS+GNPG+AGAGA+LR + D +V L E +G T N AEY AL LGL+ A++ G
Sbjct: 1 FDGASRGNPGEAGAGALLRRKRDDRIVEELLEYLGNERTVNEAEYAALCLGLRKAVELGI 60
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
I V+GDSKL+ Q++G +K+ + NL + EA ELKEKF F+I+H+ R N AD
Sbjct: 61 TKIEVRGDSKLIVNQVEGSFKLKSANLKSMHAEACELKEKFTEFKISHVKREFNKHADHL 120
Query: 195 ANMGI 199
ANM +
Sbjct: 121 ANMAV 125
>gi|410582738|ref|ZP_11319844.1| putative SAM-dependent methyltransferase [Thermaerobacter
subterraneus DSM 13965]
gi|410505558|gb|EKP95067.1| putative SAM-dependent methyltransferase [Thermaerobacter
subterraneus DSM 13965]
Length = 504
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L DGA++GNPG AG G VL DG+V R+ +G ATNNVAEY ALI GL+ AL +G
Sbjct: 366 LHTDGAARGNPGPAGIGVVLIGPDGAVAERIARFIGAATNNVAEYTALITGLQRALDRGA 425
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ + V DS+L+ Q+ G +++ N+ L L ++A L +F+ + H+ R N EAD
Sbjct: 426 RRLDVYSDSELMVRQLNGQYRVKNEGLKPLFEQAARLAAQFERVRFIHVPRERNREADRL 485
Query: 195 ANMGI 199
AN GI
Sbjct: 486 ANQGI 490
>gi|374309432|ref|YP_005055862.1| ribonuclease H [Granulicella mallensis MP5ACTX8]
gi|358751442|gb|AEU34832.1| ribonuclease H [Granulicella mallensis MP5ACTX8]
Length = 258
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 80/119 (67%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG ++GNPG +G GA+++ E G V+ L E +GI TNN AEY L+ L++AL GYK++
Sbjct: 50 DGGARGNPGPSGYGALIQDEAGLVLAELSEFLGIRTNNYAEYSGLLGCLQWALDNGYKNL 109
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
RV DS+L+ QIQG +K+N+ +L L +EA+ + FQI+H LR+ N +AD AN
Sbjct: 110 RVVSDSELMVKQIQGKYKVNSPDLRPLWEEARRRIAQLDGFQISHALRHKNKDADRLAN 168
>gi|294460894|gb|ADE76020.1| unknown [Picea sitchensis]
Length = 242
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 63 TQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-TNNVAEYRA 121
T + + C L FDGA +GNPG AG G +L+ +G VV R +G TNNVAEY+A
Sbjct: 13 TGAASFRSPPCKLYFDGACRGNPGTAGIGFLLKDSNGEVVERFCSLLGYKLTNNVAEYKA 72
Query: 122 LILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQIN 181
LI GL++AL G I+ GDS+L+C Q+ G +++ N+ LA +L KF+S ++
Sbjct: 73 LIAGLQHALDHGITSIQAYGDSELICKQVNGQYRVANRRLARYYNTVCQLLGKFESHEVL 132
Query: 182 HILRNLNSEADAQANMGI 199
H+ R+ N AD AN GI
Sbjct: 133 HVPRDENCAADDLANDGI 150
>gi|327399396|ref|YP_004340265.1| ribonuclease H [Hippea maritima DSM 10411]
gi|327182025|gb|AEA34206.1| ribonuclease H [Hippea maritima DSM 10411]
Length = 177
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS NPG+AG G V++ ++G VV ++ E +GIATNNVAEY ALI GLK + G K +
Sbjct: 54 DGASSSNPGKAGIGVVIK-KNGVVVDKISEFIGIATNNVAEYSALIRGLKRLKELGVKKV 112
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
V DS+LV Q++G++++ ++NL L E L KF+ I HI R+ NS AD A
Sbjct: 113 NVFSDSELVVKQLKGIYRVKDKNLKTLYNEVLRLSNKFEYLNIEHIKRDKNSMADTLAKT 172
Query: 198 GI 199
I
Sbjct: 173 AI 174
>gi|111018194|ref|YP_701166.1| bifunctional RNase H/acid phosphatase [Rhodococcus jostii RHA1]
gi|110817724|gb|ABG93008.1| probable alpha-ribazole phosphatase [Rhodococcus jostii RHA1]
Length = 368
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ A +G+V+ +E +GIATNNVAEYR LI GL A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDAANGTVLAERKESLGIATNNVAEYRGLIAGLDAAAE 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WK+ + ++ L ++A L +F S I R N+ A
Sbjct: 66 LGASEVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRQASTLARQFDSVTYTWIPRAENAHA 125
Query: 192 DAQANMGIYLKDGQVEAE 209
D AN + DG + E
Sbjct: 126 DRLANEAMDGADGDADVE 143
>gi|397730525|ref|ZP_10497284.1| RNase HI {Corynebacterium glutamicum [Rhodococcus sp. JVH1]
gi|396933917|gb|EJJ01068.1| RNase HI {Corynebacterium glutamicum [Rhodococcus sp. JVH1]
Length = 368
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ A +G+V+ +E +GIATNNVAEYR LI GL A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDAANGTVLAERKESLGIATNNVAEYRGLIAGLDAAAE 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WK+ + ++ L ++A L +F S I R N+ A
Sbjct: 66 LGASEVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRQASTLARQFDSVTYTWIPRAENAHA 125
Query: 192 DAQANMGIYLKDGQVEAE 209
D AN + DG + E
Sbjct: 126 DRLANEAMDGADGDADVE 143
>gi|256375028|ref|YP_003098688.1| phosphoglycerate mutase [Actinosynnema mirum DSM 43827]
gi|255919331|gb|ACU34842.1| Phosphoglycerate mutase [Actinosynnema mirum DSM 43827]
Length = 391
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLR-EGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV+ E G V R E +G+ATNNVAEYR LI GL+ A + G
Sbjct: 5 VEADGGSRGNPGPAGYGAVVLDEGGDTVLAERFEAIGVATNNVAEYRGLIAGLRAAAELG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V+ DSKLV Q+ G W+I + + L EAKEL F+S I R N AD
Sbjct: 65 ATEVDVRMDSKLVVEQMSGRWQIKHPAMKPLAAEAKELAGDFESVTYGWIPRERNKRADK 124
Query: 194 QAN 196
AN
Sbjct: 125 LAN 127
>gi|354614362|ref|ZP_09032231.1| Phosphoglycerate mutase [Saccharomonospora paurometabolica YIM
90007]
gi|353221277|gb|EHB85646.1| Phosphoglycerate mutase [Saccharomonospora paurometabolica YIM
90007]
Length = 443
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R A+ G V+ +EG+G+ TNNVAEYR L+ GL+ A
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVRDADTGEVLTERQEGLGVTTNNVAEYRGLVAGLEAAAA 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WKI N L L AKEL F + + I R N A
Sbjct: 66 VGASTVDVKMDSKLVVEQMCGRWKIKNAMLKPLALRAKELASGFDAVRYEWIPRERNKHA 125
Query: 192 DAQAN 196
D AN
Sbjct: 126 DRLAN 130
>gi|385679035|ref|ZP_10052963.1| fructose-2,6-bisphosphatase [Amycolatopsis sp. ATCC 39116]
Length = 357
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R A G+V+ +EG+G+ATNN AEY LI GL+ A +
Sbjct: 1 MVVEADGGSRGNPGPAGYGAVVRDAATGAVLAERQEGLGVATNNFAEYSGLIAGLRAAAE 60
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WKI ++ L L ++A+EL F + + I R N+ A
Sbjct: 61 AGATEVDVRMDSKLVVEQMSGRWKIKHEALKPLAEQARELAAGFAAVRYEWIPRAENAHA 120
Query: 192 DAQANMGIYLKDGQ 205
D AN + + G+
Sbjct: 121 DRLANEAMDTQAGK 134
>gi|433602799|ref|YP_007035168.1| hypothetical protein BN6_09660 [Saccharothrix espanaensis DSM
44229]
gi|407880652|emb|CCH28295.1| hypothetical protein BN6_09660 [Saccharothrix espanaensis DSM
44229]
Length = 381
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 75/129 (58%), Gaps = 1/129 (0%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
+E DG S+GNPG AG GAV+R A G V+ EG+G+ATNNVAEYR LI GL+
Sbjct: 15 RAVKVVVEADGGSRGNPGPAGYGAVVRDAATGEVLVERSEGIGVATNNVAEYRGLIAGLR 74
Query: 128 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
A + G + + DSKLV Q+ G W++ + ++ L +EA+E+ F S I R
Sbjct: 75 AAAELGASAVVARMDSKLVVEQMSGRWQVKHPSMQPLAREAREVASGFASVSYEWIPRER 134
Query: 188 NSEADAQAN 196
N AD AN
Sbjct: 135 NKAADLLAN 143
>gi|312140237|ref|YP_004007573.1| rnase h domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus equi 103S]
gi|311889576|emb|CBH48893.1| RNase H domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus equi 103S]
Length = 377
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ A+ G V+ RE +G+ATNNVAEYR LI GL A
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDADRGRVLAERREFLGVATNNVAEYRGLIAGLAAARD 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WK+ + ++ L + A+EL + F I R NS A
Sbjct: 66 LGAHEVDVRMDSKLVVEQMSGRWKVKHPDMIPLAQRARELADGFARVDFTWIPRAENSHA 125
Query: 192 DAQANMGIYLKDGQVEAECSSF 213
D AN + DG+ +A S F
Sbjct: 126 DRLANEAM---DGE-DAITSGF 143
>gi|225873970|ref|YP_002755429.1| Ribonuclease HI [Acidobacterium capsulatum ATCC 51196]
gi|225794363|gb|ACO34453.1| Ribonuclease HI [Acidobacterium capsulatum ATCC 51196]
Length = 221
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 76/122 (62%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG S+GNPG AG G L E G V L E +G+ TNNVAEY L+ L++AL++G+ +
Sbjct: 16 DGGSRGNPGPAGYGVYLEDEQGQKVDELYEFLGVKTNNVAEYSGLLAALEFALEEGHPCL 75
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
RV DS+L+ Q+QG +++N+ +L L EAK + F+I H+LR N AD AN+
Sbjct: 76 RVVADSELMVKQMQGKYRVNSPDLRPLYDEAKRRVARLDGFRIEHVLRGKNKHADRLANL 135
Query: 198 GI 199
+
Sbjct: 136 AM 137
>gi|332799079|ref|YP_004460578.1| ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
gi|438002187|ref|YP_007271930.1| Ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
gi|332696814|gb|AEE91271.1| ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
gi|432178981|emb|CCP25954.1| Ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
Length = 141
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 76/122 (62%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG AG G +L ED +V+ + E +G TNN+AEY A+I LK AL+ + I
Sbjct: 9 DGASRGNPGNAGIGVLLLDEDHNVIKEISEYIGETTNNIAEYTAMITALKEALEMDFDEI 68
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
V DS+L+ QI +++ N+ L L KE +L E+F+S+ + H+ R N AD AN
Sbjct: 69 EVISDSELMVKQINKEYQVKNEGLKPLYKEICKLLEEFKSYTVRHVRRENNKRADELANR 128
Query: 198 GI 199
GI
Sbjct: 129 GI 130
>gi|325677016|ref|ZP_08156687.1| phosphoglycerate mutase [Rhodococcus equi ATCC 33707]
gi|325552178|gb|EGD21869.1| phosphoglycerate mutase [Rhodococcus equi ATCC 33707]
Length = 377
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ A+ G V+ RE +G+ATNNVAEYR LI GL A
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDADRGRVLAERREFLGVATNNVAEYRGLIAGLAAARD 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WK+ + ++ L + A+EL + F I R NS A
Sbjct: 66 LGAHEVDVRMDSKLVVEQMSGRWKVKHPDMIPLAQRARELADGFARVDFTWIPRAENSHA 125
Query: 192 DAQANMGIYLKDGQVEAECSSF 213
D AN + DG+ +A S F
Sbjct: 126 DRLANEAM---DGE-DAITSGF 143
>gi|315426222|dbj|BAJ47865.1| ribonuclease HI [Candidatus Caldiarchaeum subterraneum]
gi|315427897|dbj|BAJ49489.1| ribonuclease HI [Candidatus Caldiarchaeum subterraneum]
gi|343485053|dbj|BAJ50707.1| ribonuclease HI [Candidatus Caldiarchaeum subterraneum]
Length = 134
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 70 CYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYA 129
+ + DGAS+GNPG AG G +++ D S ++ RE +G+ATNN AEY ALI L+ A
Sbjct: 2 SHEAEIYVDGASRGNPGPAGIGYIIKIGDQS--FKHREHIGVATNNQAEYHALIKSLEKA 59
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
LQ G K V DS+L+ Q+ G +KI N L L ++ ++L +F+ F I H+ R N
Sbjct: 60 LQLGVKKAHVYSDSELLVKQVNGAYKIRNNTLTILHQKLQQLITRFEEFHITHVDREKNR 119
Query: 190 EADAQANMGI 199
EAD AN I
Sbjct: 120 EADRLANQAI 129
>gi|145223479|ref|YP_001134157.1| bifunctional RNase H/acid phosphatase [Mycobacterium gilvum
PYR-GCK]
gi|315443840|ref|YP_004076719.1| fructose-2,6-bisphosphatase [Mycobacterium gilvum Spyr1]
gi|145215965|gb|ABP45369.1| Phosphoglycerate mutase [Mycobacterium gilvum PYR-GCK]
gi|315262143|gb|ADT98884.1| fructose-2,6-bisphosphatase [Mycobacterium gilvum Spyr1]
Length = 356
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ + D SV+ R +G ATNNVAEYR LI GL+ A Q
Sbjct: 3 VIVECDGGSRGNPGPAGYGAVVWSADRESVLAEARSAIGTATNNVAEYRGLIAGLESAAQ 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKL+ Q+ G W++ + +LA L ++A +L +F+ + I R NS A
Sbjct: 63 TGATEVEVRMDSKLIVEQMAGRWRVKHPDLAALHRQAADLARRFEHITYSWIPREQNSYA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|375093749|ref|ZP_09740014.1| fructose-2,6-bisphosphatase [Saccharomonospora marina XMU15]
gi|374654482|gb|EHR49315.1| fructose-2,6-bisphosphatase [Saccharomonospora marina XMU15]
Length = 389
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 76/125 (60%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV++ A G V+ +EG+G+ATNNVAEYRALI GL+ A +
Sbjct: 5 VIVEADGGSRGNPGPAGYGAVVKDARSGEVLAERQEGLGVATNNVAEYRALIAGLEAAAR 64
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WKI + L L A++L F I R+ N+ A
Sbjct: 65 TGATAVDVKMDSKLVVEQMSGRWKIKHAALQPLALRARDLAAGFDRVTYEWIPRSRNAHA 124
Query: 192 DAQAN 196
D AN
Sbjct: 125 DRLAN 129
>gi|320354804|ref|YP_004196143.1| ribonuclease H [Desulfobulbus propionicus DSM 2032]
gi|320123306|gb|ADW18852.1| ribonuclease H [Desulfobulbus propionicus DSM 2032]
Length = 202
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 81/127 (63%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
C L DGAS+GNPGQAGAGAVL + +G+ TNNVAEY+AL++GL AL+
Sbjct: 71 CRLFTDGASRGNPGQAGAGAVLLDNGNEELAAKSVYLGVCTNNVAEYKALLIGLDEALRH 130
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + V DS+L+ QIQG +K+ N+ L L ++ +E ++F ++ I H+ R+ N+ AD
Sbjct: 131 GCTDVAVFLDSELIVRQIQGRYKVKNEALLPLFQQVQERLDRFAAWSITHVPRSQNARAD 190
Query: 193 AQANMGI 199
AN GI
Sbjct: 191 QLANRGI 197
>gi|424858491|ref|ZP_18282523.1| phosphoglycerate mutase [Rhodococcus opacus PD630]
gi|356662178|gb|EHI42477.1| phosphoglycerate mutase [Rhodococcus opacus PD630]
Length = 368
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ A GSV+ +E +GIATNNVAEYR LI GL A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDATHGSVLAERKESLGIATNNVAEYRGLIAGLDAAAE 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WK+ + ++ L ++A L +F S I R N+ A
Sbjct: 66 LGASEVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRQASTLARQFDSVTYTWIPRAENAHA 125
Query: 192 DAQANMGIYLKDGQVEAE 209
D AN + G +AE
Sbjct: 126 DRLANEAMDGAAGNSDAE 143
>gi|302389500|ref|YP_003825321.1| ribonuclease H [Thermosediminibacter oceani DSM 16646]
gi|302200128|gb|ADL07698.1| ribonuclease H [Thermosediminibacter oceani DSM 16646]
Length = 142
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 81/129 (62%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ DGAS+GNPG AG G V+ E+G+ + + + +G TNN+AEY AL+ LK AL+
Sbjct: 4 LTVYTDGASRGNPGDAGIGIVILDENGNTLKEISDYIGQTTNNIAEYTALVTALKEALEM 63
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + I + DS+L+ QI G ++I N+ + L +A EL ++F+ F I+HI R N AD
Sbjct: 64 GCEEIGIFSDSELMVKQINGEYQIKNEGIKRLYAQAMELLKEFKRFSISHIRREQNKRAD 123
Query: 193 AQANMGIYL 201
AN GI L
Sbjct: 124 ELANEGIDL 132
>gi|320105790|ref|YP_004181380.1| ribonuclease H [Terriglobus saanensis SP1PR4]
gi|319924311|gb|ADV81386.1| ribonuclease H [Terriglobus saanensis SP1PR4]
Length = 214
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 82/131 (62%), Gaps = 2/131 (1%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG ++GNPG AG GAV+ EDG+V+ L E +G TNN AEY L+ L++ L G++ +
Sbjct: 27 DGGARGNPGPAGYGAVVTTEDGTVLAELSEFLGFKTNNFAEYSGLLGVLQWTLANGHRKL 86
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN- 196
++ DS+L+ QIQG +K+N+ +L L EA+ + K + F+I H LR+ N AD AN
Sbjct: 87 KLVSDSELMVKQIQGKYKVNSPDLKPLHAEARAMIGKLEKFEIAHALRHKNKHADRLANE 146
Query: 197 -MGIYLKDGQV 206
M +K G V
Sbjct: 147 AMDRGMKRGPV 157
>gi|390956433|ref|YP_006420190.1| ribonuclease HI [Terriglobus roseus DSM 18391]
gi|390411351|gb|AFL86855.1| ribonuclease HI [Terriglobus roseus DSM 18391]
Length = 225
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 77/119 (64%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG ++GNPG AG GAV+ AEDG+V+ L E +G TNN AEY L+ L++AL + +
Sbjct: 27 DGGARGNPGPAGYGAVIVAEDGTVLAELSEFLGHKTNNYAEYSGLLGVLQWALDHNHLRV 86
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
R+ DS+L+ QIQG +K+N+ +L L +EAK K + F I+H LR+ N AD AN
Sbjct: 87 RLVSDSELMVKQIQGKYKVNSPDLKPLWEEAKRRIAKLEFFNISHALRHKNKTADRLAN 145
>gi|222530387|ref|YP_002574269.1| ribonuclease H [Caldicellulosiruptor bescii DSM 6725]
gi|222457234|gb|ACM61496.1| ribonuclease H [Caldicellulosiruptor bescii DSM 6725]
Length = 198
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 75/123 (60%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGASKGNPG AGAG V+ G+V+ + +GI TNN AEY ALI L+ AL+ G K
Sbjct: 6 FDGASKGNPGPAGAGIVIVNPAGNVILEYSKELGIKTNNEAEYLALIELLQKALELGIKE 65
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ VQGDS+LV Q+ G W IN +L L ++A EL EKF + I R N AD +N
Sbjct: 66 LEVQGDSQLVINQVFGNWNINMPHLYSLYEQATELLEKFDKVKARWIPREKNQLADLLSN 125
Query: 197 MGI 199
I
Sbjct: 126 KAI 128
>gi|384104743|ref|ZP_10005681.1| bifunctional RNase H/acid phosphatase [Rhodococcus imtechensis
RKJ300]
gi|383837826|gb|EID77223.1| bifunctional RNase H/acid phosphatase [Rhodococcus imtechensis
RKJ300]
Length = 368
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ A G+V+ +E +GIATNNVAEYR LI GL A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDATHGTVLAERKESLGIATNNVAEYRGLIAGLDAAAE 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WK+ + ++ L ++A L +F S I R N+ A
Sbjct: 66 LGASEVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRQASTLARQFDSVTYTWIPRAENAHA 125
Query: 192 DAQANMGIYLKDGQVEAE 209
D AN + G +AE
Sbjct: 126 DRLANEAMDGAAGDSDAE 143
>gi|432339703|ref|ZP_19589323.1| bifunctional RNase H/acid phosphatase [Rhodococcus wratislaviensis
IFP 2016]
gi|430775124|gb|ELB90674.1| bifunctional RNase H/acid phosphatase [Rhodococcus wratislaviensis
IFP 2016]
Length = 368
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ A G+V+ +E +GIATNNVAEYR LI GL A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDATHGTVLAERKESLGIATNNVAEYRGLIAGLDAAAE 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WK+ + ++ L ++A L +F S I R N+ A
Sbjct: 66 LGASEVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRQASTLARQFDSVTYTWIPRAENAHA 125
Query: 192 DAQANMGIYLKDGQVEAE 209
D AN + G +AE
Sbjct: 126 DRLANEAMDGAAGDSDAE 143
>gi|419961618|ref|ZP_14477624.1| bifunctional RNase H/acid phosphatase [Rhodococcus opacus M213]
gi|414573002|gb|EKT83689.1| bifunctional RNase H/acid phosphatase [Rhodococcus opacus M213]
Length = 368
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ A G+V+ +E +GIATNNVAEYR LI GL A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDATHGTVLAERKESLGIATNNVAEYRGLIAGLDAAAE 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WK+ + ++ L ++A L +F S I R N+ A
Sbjct: 66 LGASEVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRQASTLARQFDSVTYTWIPRAENAHA 125
Query: 192 DAQANMGIYLKDGQVEAE 209
D AN + G +AE
Sbjct: 126 DRLANEAMDGAAGDSDAE 143
>gi|258450517|gb|ACV72188.1| ribonuclease H [uncultured organism]
Length = 156
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 82/127 (64%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG S+GNPGQ+ +G V++ D V+++ E VGI TNN AEY+A+ L L+ AL+ G K +
Sbjct: 30 DGGSRGNPGQSASGFVIKDADDRVLFKGGEYVGITTNNQAEYQAVKLALEKALELGAKKV 89
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+++ DS LV Q+ G +KI N++L + K+L +F+SF ++H+ R N EADA N
Sbjct: 90 KLRLDSLLVVNQLNGSYKIRNRDLWSIHMFIKDLIGRFESFSVSHVRREFNKEADAMVNK 149
Query: 198 GIYLKDG 204
+ DG
Sbjct: 150 ILDEHDG 156
>gi|322436933|ref|YP_004219145.1| ribonuclease H [Granulicella tundricola MP5ACTX9]
gi|321164660|gb|ADW70365.1| ribonuclease H [Granulicella tundricola MP5ACTX9]
Length = 203
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 86/137 (62%), Gaps = 2/137 (1%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG S+GNPG +G GAV+ G + L E +GI TNN AEY L+ L YA++ +
Sbjct: 17 DGGSRGNPGPSGYGAVITDTGGQKIAELSEFLGIRTNNYAEYSGLLAVLAYAVENKRLSL 76
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN- 196
+V DS+L+ QIQG +K+N+ +L L +EA++ K +SF+I+H LR+ N +ADA AN
Sbjct: 77 KVVSDSELMVKQIQGKYKVNSPDLKPLWQEARDRIAKLKSFEISHALRHKNKDADALANQ 136
Query: 197 -MGIYLKDGQVEAECSS 212
M +K G+ +A ++
Sbjct: 137 AMDRGMKKGEYKATPTA 153
>gi|257054785|ref|YP_003132617.1| fructose-2,6-bisphosphatase [Saccharomonospora viridis DSM 43017]
gi|256584657|gb|ACU95790.1| fructose-2,6-bisphosphatase [Saccharomonospora viridis DSM 43017]
Length = 383
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYAL 130
+ +E DG S+GNPG AG GAV+R D G V+ +EG+G+ TNNVAEYR LI GL+ A
Sbjct: 4 TVIVEADGGSRGNPGPAGYGAVVRDPDSGDVLAERQEGLGVTTNNVAEYRGLIAGLEAAA 63
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ G + + DSKLV Q+ G WKI N L L +EL +F + R N+
Sbjct: 64 ELGASAVEARLDSKLVVEQMSGRWKIKNAMLQPLALRVRELASQFDRVTYTWVPRAHNAH 123
Query: 191 ADAQAN 196
AD AN
Sbjct: 124 ADRLAN 129
>gi|153003635|ref|YP_001377960.1| ribonuclease H [Anaeromyxobacter sp. Fw109-5]
gi|152027208|gb|ABS24976.1| ribonuclease H [Anaeromyxobacter sp. Fw109-5]
Length = 254
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 79/122 (64%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA++GNPG AGAGAV+ + DG +V ++ + +G +TNNVAEY LILGL+ A G K +
Sbjct: 129 DGAARGNPGPAGAGAVIVSPDGHIVAKVGKFLGESTNNVAEYMGLILGLRRAKAMGIKEL 188
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
V DS+L+ Q+ G + + ++L L EA++L + F Q+ HI R N +ADA +N
Sbjct: 189 EVFADSELLVKQLAGDYAVKAEHLRPLHDEAQQLLKGFSWIQVRHIPREENGQADAMSNR 248
Query: 198 GI 199
I
Sbjct: 249 AI 250
>gi|197121176|ref|YP_002133127.1| ribonuclease H [Anaeromyxobacter sp. K]
gi|220915876|ref|YP_002491180.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
gi|196171025|gb|ACG71998.1| ribonuclease H [Anaeromyxobacter sp. K]
gi|219953730|gb|ACL64114.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
Length = 253
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 78/128 (60%), Gaps = 1/128 (0%)
Query: 73 CTLEF-DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
CT F DGA++GNPG AGAGAV+ DG +V ++ + +G +TNNVAEY LILGLK A
Sbjct: 122 CTRLFTDGAARGNPGPAGAGAVIVNADGHIVAKIGKFLGDSTNNVAEYMGLILGLKRAKA 181
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + V DS+L+ Q+ G + + +L L EA+ L F Q+ H+ R N+ A
Sbjct: 182 MGIKELEVLSDSELMVKQLAGDYAVKADHLRPLHDEARALIAGFDRIQVRHVPREENTLA 241
Query: 192 DAQANMGI 199
DA +N I
Sbjct: 242 DAMSNRAI 249
>gi|383828784|ref|ZP_09983873.1| fructose-2,6-bisphosphatase [Saccharomonospora xinjiangensis XJ-54]
gi|383461437|gb|EID53527.1| fructose-2,6-bisphosphatase [Saccharomonospora xinjiangensis XJ-54]
Length = 382
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 77/136 (56%), Gaps = 4/136 (2%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R D G V+ ++G+G+ATNNVAEY LI GL+ A +
Sbjct: 5 VVVEADGGSRGNPGPAGYGAVVRDPDTGDVLAERQDGLGVATNNVAEYTGLIAGLEAAAE 64
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + + DSKLV Q+ G WKI N L L A+EL +F + R N+ A
Sbjct: 65 LGASTVEARLDSKLVVEQMSGRWKIKNAALQPLALRARELAGRFDRVTYTWVPRAKNAHA 124
Query: 192 DAQANMGIYLKDGQVE 207
D AN + D Q E
Sbjct: 125 DRLANEAM---DAQAE 137
>gi|268323231|emb|CBH36819.1| hypothetical protein, containing RNase H domain [uncultured
archaeon]
Length = 213
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 88/141 (62%), Gaps = 5/141 (3%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVG-IATNNVAEYRALILGLKYALQKG 133
++FDGA+ NPG+ G G VL ED ++ ++ + + TNN+AEY AL+ GL AL+ G
Sbjct: 4 IQFDGAAIPNPGKMGIGVVL-IEDKRLIAKISQKLPDKGTNNIAEYTALLTGLTKALELG 62
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGL-CKEAKELKEKFQSFQINHILRNLNSEAD 192
+KHI ++GDSKLV Q++G WKIN +L L + KEL E F S+ +N I RN NS AD
Sbjct: 63 WKHIIIEGDSKLVINQVKGAWKINKAHLKRLHARVIKELSE-FDSYALNWIPRNKNSAAD 121
Query: 193 AQANMGIYLK-DGQVEAECSS 212
A+ + K DG AE +
Sbjct: 122 ELASKALRHKADGYHRAETKT 142
>gi|108756881|ref|YP_633866.1| ribonuclease H [Myxococcus xanthus DK 1622]
gi|108460761|gb|ABF85946.1| ribonuclease H [Myxococcus xanthus DK 1622]
Length = 147
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 87/143 (60%), Gaps = 6/143 (4%)
Query: 58 DSCLNTQSVP-YNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNV 116
D+ +++S P YS DGA++GNPG AGAGAVL G+VV RL +G TNN
Sbjct: 6 DAAPDSESHPRLRVYS-----DGAARGNPGPAGAGAVLMDPAGNVVARLGRFLGHQTNNC 60
Query: 117 AEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ 176
AEY L+LGLK+A G + + V DS+L+ Q+ G +++ + L L +EA++L + F
Sbjct: 61 AEYMGLLLGLKHAQSLGAREVEVFADSELLIRQLGGRYQVKSPTLKPLYEEARKLLKGFT 120
Query: 177 SFQINHILRNLNSEADAQANMGI 199
+++H+ R N+EAD +N I
Sbjct: 121 KVKLHHVPRAQNAEADEMSNRAI 143
>gi|405371435|ref|ZP_11027041.1| ribonuclease H [Chondromyces apiculatus DSM 436]
gi|397088908|gb|EJJ19862.1| ribonuclease H [Myxococcus sp. (contaminant ex DSM 436)]
Length = 212
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 78/122 (63%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA++GNPG AGAGAVL G+VV RL +G TNN AEY L+LGLK+A G + +
Sbjct: 87 DGAARGNPGPAGAGAVLMDPTGNVVARLGRFLGTQTNNSAEYMGLLLGLKHAQSLGAREV 146
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
V DS+L+ Q+ G +++ + L L +EA++L + F +++H+ R N+EAD +N
Sbjct: 147 DVYADSELLIRQLGGRYQVKSATLKPLYEEARKLLKGFTKVKLHHVPRAQNAEADEMSNR 206
Query: 198 GI 199
I
Sbjct: 207 AI 208
>gi|227543054|ref|ZP_03973103.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227181276|gb|EEI62248.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 388
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 78/127 (61%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ DG S+GNPG AG+G+V++ G+ + L VG TNNVAEY+ALI GL+ AL+
Sbjct: 4 VTVFADGGSRGNPGIAGSGSVVKDSHGNELRALSHFVGKTTNNVAEYQALINGLRAALEL 63
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G H +V DSKLV Q+ G WKI + ++ K A EL +F+ F I + R N+ AD
Sbjct: 64 GATHCQVFMDSKLVVEQMSGRWKIKHPDMQAKAKIAHELINQFEQFSILWVPRKKNARAD 123
Query: 193 AQANMGI 199
AN+ +
Sbjct: 124 ELANIAM 130
>gi|404421284|ref|ZP_11003005.1| bifunctional RNase H/acid phosphatase [Mycobacterium fortuitum
subsp. fortuitum DSM 46621]
gi|403659124|gb|EJZ13786.1| bifunctional RNase H/acid phosphatase [Mycobacterium fortuitum
subsp. fortuitum DSM 46621]
Length = 361
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 82/146 (56%), Gaps = 6/146 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV+ AE ++ +E +G ATNNVAEYR LI GL+ + G
Sbjct: 5 VEADGGSRGNPGPAGYGAVVFDAEHAVILAERKEAIGRATNNVAEYRGLIAGLEATAELG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G WK+ + +L L + A EL FQ + I R+ NS AD
Sbjct: 65 ATEVAVSMDSKLVVEQMSGRWKVKHPDLVPLQRRAAELAAGFQRISYSWIPRDRNSHADG 124
Query: 194 QANMGI-----YLKDGQVEAECSSFT 214
AN + + D EAE ++ +
Sbjct: 125 LANEAMDAAAGIVSDRPAEAEKAALS 150
>gi|312126659|ref|YP_003991533.1| ribonuclease h [Caldicellulosiruptor hydrothermalis 108]
gi|311776678|gb|ADQ06164.1| ribonuclease H [Caldicellulosiruptor hydrothermalis 108]
Length = 199
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 75/123 (60%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGASKGNPG AGAG V+ G+V+ + +GI TNN AEY ALI L+ AL+ G K
Sbjct: 6 FDGASKGNPGPAGAGIVIVNPAGNVILEYSKELGIKTNNEAEYLALIELLQKALELGIKE 65
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ + GDS+LV Q+ G W IN +L L ++A EL EKF + I R N AD+ +N
Sbjct: 66 LEILGDSQLVINQVFGSWNINMPHLYALYEQATELLEKFDKVKAKWIPREKNQLADSLSN 125
Query: 197 MGI 199
I
Sbjct: 126 KAI 128
>gi|317122878|ref|YP_004102881.1| ribonuclease H [Thermaerobacter marianensis DSM 12885]
gi|315592858|gb|ADU52154.1| ribonuclease H [Thermaerobacter marianensis DSM 12885]
Length = 140
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 75/125 (60%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L DGA++GNPG AG G VL G V R+ +G ATNNVAEY ALI GL+ AL+ G
Sbjct: 10 LHTDGAARGNPGPAGIGVVLIDPRGQVAERVARFIGTATNNVAEYTALITGLQRALEHGA 69
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ + V DS+L+ Q+ G +++ N L L ++ +L +F + + H+ R N +AD
Sbjct: 70 RRLEVYSDSELMVRQLNGQYRVKNDGLKPLYRQVLDLVARFDAVRFVHVPRERNKDADRL 129
Query: 195 ANMGI 199
AN GI
Sbjct: 130 ANQGI 134
>gi|227488442|ref|ZP_03918758.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227091656|gb|EEI26968.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 388
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 78/127 (61%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ DG S+GNPG AG+G+V++ G+ + L VG TNNVAEY+ALI GL+ AL+
Sbjct: 4 VTVFADGGSRGNPGIAGSGSVVKDSHGNELRALSHFVGKTTNNVAEYQALINGLRAALEL 63
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G H +V DSKLV Q+ G WKI + ++ K A EL +F+ F I + R N+ AD
Sbjct: 64 GATHCQVFMDSKLVVEQMSGRWKIKHPDMQAKAKIAHELINQFEQFSILWVPRKKNARAD 123
Query: 193 AQANMGI 199
AN+ +
Sbjct: 124 ELANIAM 130
>gi|453072807|ref|ZP_21975855.1| bifunctional RNase H/acid phosphatase [Rhodococcus qingshengii BKS
20-40]
gi|452757455|gb|EME15860.1| bifunctional RNase H/acid phosphatase [Rhodococcus qingshengii BKS
20-40]
Length = 371
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 72/124 (58%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+E DG S+GNPG AG GAV+ SV+ +E +GIATNNVAEYR LI GL A +
Sbjct: 6 VIVEADGGSRGNPGPAGYGAVVFDASRSVLAERKESIGIATNNVAEYRGLIAGLTAAGEL 65
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + V+ DSKLV Q+ G WK+ + ++ L + A EL +F I R NS AD
Sbjct: 66 GASTVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRRAAELATQFSRVTYTWIPRGENSHAD 125
Query: 193 AQAN 196
AN
Sbjct: 126 RLAN 129
>gi|375099146|ref|ZP_09745409.1| fructose-2,6-bisphosphatase [Saccharomonospora cyanea NA-134]
gi|374659878|gb|EHR59756.1| fructose-2,6-bisphosphatase [Saccharomonospora cyanea NA-134]
Length = 382
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R D G V+ + G+G+ TNNVAEY LI GL+ A +
Sbjct: 5 VVVEADGGSRGNPGPAGYGAVVRDPDTGDVLAERQAGLGVTTNNVAEYNGLIAGLEAAAE 64
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + + DSKLV Q+ G WKI N L L +EL ++F I R N+ A
Sbjct: 65 LGASTVETRLDSKLVVEQMSGRWKIKNAMLQPLALRVRELAQRFDRVTYTWIPRAKNAHA 124
Query: 192 DAQANMGIYLKDGQVEAECSS 212
D AN + + Q E S
Sbjct: 125 DRLANEAMDAQAAQAEGRSGS 145
>gi|226186262|dbj|BAH34366.1| ribonuclease H/acid phosphatase [Rhodococcus erythropolis PR4]
Length = 374
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 72/124 (58%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+E DG S+GNPG AG GAV+ SV+ +E +GIATNNVAEYR LI GL A +
Sbjct: 6 VIVEADGGSRGNPGPAGYGAVVFDSTRSVLAERKESIGIATNNVAEYRGLIAGLAAAGEL 65
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + V+ DSKLV Q+ G WK+ + ++ L + A EL +F I R NS AD
Sbjct: 66 GASTVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRRAAELATQFSRVTYTWIPRGENSHAD 125
Query: 193 AQAN 196
AN
Sbjct: 126 RLAN 129
>gi|442323255|ref|YP_007363276.1| ribonuclease H [Myxococcus stipitatus DSM 14675]
gi|441490897|gb|AGC47592.1| ribonuclease H [Myxococcus stipitatus DSM 14675]
Length = 208
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA++GNPG AGAGAV+ +G V+ RL +G TNN AEY+ L+LGL++A G + +
Sbjct: 83 DGAARGNPGPAGAGAVVTDAEGQVLARLGRFLGTQTNNTAEYQGLLLGLRHAKSLGAREV 142
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
V DS+L+ Q+ G +++ + L L EA++L F +++HI R N EADA +N
Sbjct: 143 DVYADSELLIRQLGGQYQVKSATLKPLFDEARKLLAAFARVRLHHIPRAKNGEADAMSNR 202
Query: 198 GI 199
I
Sbjct: 203 AI 204
>gi|386846497|ref|YP_006264510.1| bifunctional RNase H/acid phosphatase [Actinoplanes sp. SE50/110]
gi|359834001|gb|AEV82442.1| bifunctional RNase H/acid phosphatase [Actinoplanes sp. SE50/110]
Length = 366
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV++ A G V+ +G ATNNVAEY LI GL+ A +
Sbjct: 7 VVVEADGGSRGNPGPAGYGAVVKDAATGEVLLERYAALGTATNNVAEYSGLIAGLRAAAE 66
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+ ++ DSKLV Q+ G W+I N L L EA +L +FQ+ + I R N EA
Sbjct: 67 LNAARVDIRMDSKLVIEQMSGRWQIKNPGLRPLAAEAAQLVARFQTVSFDWIPRERNREA 126
Query: 192 DAQAN 196
DA AN
Sbjct: 127 DALAN 131
>gi|86157150|ref|YP_463935.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773661|gb|ABC80498.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C]
Length = 168
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 78/128 (60%), Gaps = 1/128 (0%)
Query: 73 CTLEF-DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
CT F DGA++GNPG AGAGAV+ DG +V ++ + +G +TNNVAEY LILGLK A
Sbjct: 37 CTRLFTDGAARGNPGPAGAGAVIVNADGHIVAKIGKFLGDSTNNVAEYMGLILGLKRAKA 96
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + V DS+L+ Q+ G + + +L L EA+ L F Q+ H+ R N+ A
Sbjct: 97 MGIKELEVLSDSELMVKQLAGDYAVKADHLRPLHDEAQALIAGFDRIQVRHVPREENALA 156
Query: 192 DAQANMGI 199
DA +N I
Sbjct: 157 DAMSNRAI 164
>gi|120404586|ref|YP_954415.1| bifunctional RNase H/acid phosphatase [Mycobacterium vanbaalenii
PYR-1]
gi|119957404|gb|ABM14409.1| Phosphoglycerate mutase [Mycobacterium vanbaalenii PYR-1]
Length = 369
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ + D SV+ +G ATNNVAEYR LI GL+ A +
Sbjct: 3 VVVEADGGSRGNPGPAGYGAVVVSADRVSVLAETSSAIGTATNNVAEYRGLIAGLEAAAE 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V DSKLV Q+ G W++ + +LA L ++A++L+ +FQ + R NS A
Sbjct: 63 LGATEVEVLMDSKLVVEQMSGRWRVRHPSLAPLHQQARDLERRFQRVSYRWVPRAQNSRA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|226360320|ref|YP_002778098.1| bifunctional RNase H/acid phosphatase [Rhodococcus opacus B4]
gi|226238805|dbj|BAH49153.1| ribonuclease H/acid phosphatase [Rhodococcus opacus B4]
Length = 368
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG G V+ A DG+V+ +E +G TNNVAEYR LI GL+ A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGTVVFAAADGAVLAERKESLGTVTNNVAEYRGLIAGLEAAAE 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WK+ + ++ L + A EL +F S I R N+ A
Sbjct: 66 VGASGVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRRASELARQFNSVTYTWIPRAENAHA 125
Query: 192 DAQAN 196
D AN
Sbjct: 126 DRLAN 130
>gi|312794240|ref|YP_004027163.1| ribonuclease h [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312181380|gb|ADQ41550.1| ribonuclease H [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 199
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 74/123 (60%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGASKGNPG AGAG V+ +G V+ + +GI TNN AEY ALI L+ AL+ G +
Sbjct: 6 FDGASKGNPGPAGAGIVIVNPEGRVILEYSKELGIRTNNEAEYLALIELLQKALELGIRE 65
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ + GDS+LV Q+ G W IN +L L +A EL EKF + I R N AD+ +N
Sbjct: 66 LEIMGDSQLVINQVFGNWNINMPHLYTLYNQATELLEKFDKVKARWIPREKNQLADSLSN 125
Query: 197 MGI 199
I
Sbjct: 126 KAI 128
>gi|229490280|ref|ZP_04384122.1| phosphoglycerate mutase [Rhodococcus erythropolis SK121]
gi|229322812|gb|EEN88591.1| phosphoglycerate mutase [Rhodococcus erythropolis SK121]
Length = 376
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 72/124 (58%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+E DG S+GNPG AG GAV+ SV+ +E +GIATNNVAEYR LI GL A +
Sbjct: 6 VIVEADGGSRGNPGPAGYGAVVFDASRSVLAERKESIGIATNNVAEYRGLIAGLIAAGEL 65
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + V+ DSKLV Q+ G WK+ + ++ L + A EL +F I R NS AD
Sbjct: 66 GASTVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRRAAELATQFSRVTYTWIPRGENSHAD 125
Query: 193 AQAN 196
AN
Sbjct: 126 RLAN 129
>gi|443672672|ref|ZP_21137754.1| RNase H domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus sp. AW25M09]
gi|443414838|emb|CCQ16092.1| RNase H domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus sp. AW25M09]
Length = 377
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 76 EFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
E DG S+GNPG AG GAV+ + D S V+ R +GIATNNVAEY LI L A G
Sbjct: 10 EADGGSRGNPGPAGYGAVVFSADRSEVLAERRAALGIATNNVAEYNGLIAALTAAADVGA 69
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ + V+ DSKLV Q+ G WK+ + ++ L ++A EL +F S I R NS ADA
Sbjct: 70 REVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRKAAELARRFDSVTYEWIPRAKNSHADAL 129
Query: 195 AN 196
AN
Sbjct: 130 AN 131
>gi|344210851|ref|YP_004795171.1| ribonuclease H-like protein [Haloarcula hispanica ATCC 33960]
gi|343782206|gb|AEM56183.1| ribonuclease H-like protein [Haloarcula hispanica ATCC 33960]
Length = 198
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G VL +D +V E +G ATNN AEY+ALI ++ A G+
Sbjct: 74 FDGASRGNPGPASVGYVL-VDDSGIVTEGGETIGTATNNQAEYKALIRAVEVARDYGFDD 132
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ ++GDS+L+ Q++G W N+ +L +EL F +QI H+ R +N AD AN
Sbjct: 133 VHIRGDSELIVKQVRGEWDTNDPDLRESRVRVRELLTDFDDWQIEHVPREINDRADELAN 192
>gi|451340121|ref|ZP_21910623.1| Phosphoglycerate mutase family [Amycolatopsis azurea DSM 43854]
gi|449417098|gb|EMD22783.1| Phosphoglycerate mutase family [Amycolatopsis azurea DSM 43854]
Length = 375
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV++ A G V+ + +GIATNNVAEY LI GL A + G
Sbjct: 7 IEADGGSRGNPGPAGYGAVVKDAATGEVLAERKAYIGIATNNVAEYGGLIAGLTAAAELG 66
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V+ DSKLV Q+ G WK+ + ++ L EAKEL +F + I R NS AD
Sbjct: 67 VSTVDVRMDSKLVVEQMSGRWKVKHPSMQPLNAEAKELAARFSRVRYEWIPRAENSHADG 126
Query: 194 QAN 196
AN
Sbjct: 127 LAN 129
>gi|333990306|ref|YP_004522920.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. JDM601]
gi|333486274|gb|AEF35666.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. JDM601]
Length = 369
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG G+V+ + D V+ + +G+ATNNVAEYR L+ GL A +
Sbjct: 3 VVVEADGGSRGNPGPAGYGSVVWSADRAEVLAETKGSIGVATNNVAEYRGLVAGLTEAAR 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V DSKLV Q+ G WK+ + +L L A+EL KF + N I R NS A
Sbjct: 63 LGAAEVAVFMDSKLVVEQMAGRWKVKHPDLIPLHTRARELAAKFDHVRYNWIPREKNSHA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|404446830|ref|ZP_11011927.1| bifunctional RNase H/acid phosphatase [Mycobacterium vaccae ATCC
25954]
gi|403649864|gb|EJZ05169.1| bifunctional RNase H/acid phosphatase [Mycobacterium vaccae ATCC
25954]
Length = 359
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ + D G+V+ E +G ATNNVAEYR LI GL A
Sbjct: 3 VIVEADGGSRGNPGPAGFGAVVWSADRGAVLAEAAESIGRATNNVAEYRGLIAGLGAADD 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V DSKLV Q+ G W++ + +LA L ++A +L +F+ + I R NS A
Sbjct: 63 LGATEVEVYMDSKLVVEQMSGRWRVKHPDLAPLHQQANDLARRFEHVSYSWIPRAQNSHA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|54023608|ref|YP_117850.1| bifunctional RNase H/acid phosphatase [Nocardia farcinica IFM
10152]
gi|54015116|dbj|BAD56486.1| putative phosphoglycerate mutase [Nocardia farcinica IFM 10152]
Length = 406
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ A+ +V+ RE VGIATNNVAEYR LI GL+ A +
Sbjct: 6 VIVEADGGSRGNPGPAGYGAVVFDADHVAVLAERRESVGIATNNVAEYRGLIAGLEAAAE 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + + V+ DSKLV Q+ G WK+ + + L A+ L F + I R N+ A
Sbjct: 66 LGARTVDVRMDSKLVVEQMSGRWKVKHAAMIPLADRARRLVAGFDAVTFTWIPRAQNAHA 125
Query: 192 DAQAN 196
D AN
Sbjct: 126 DRLAN 130
>gi|429731084|ref|ZP_19265725.1| ribonuclease HI [Corynebacterium durum F0235]
gi|429146467|gb|EKX89520.1| ribonuclease HI [Corynebacterium durum F0235]
Length = 371
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 74/125 (59%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
++ DG S+GNPG AG+G VL G+V+ + + VG ATNNVAEYRAL+ GL+ A G
Sbjct: 5 IKADGGSRGNPGIAGSGTVLYDASGTVLTSIADYVGTATNNVAEYRALLNGLEAARDLGA 64
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ V DSKLV Q+ G WKI + ++ L +A+ + F I R NSEADA
Sbjct: 65 TEVEVLMDSKLVVEQMSGRWKIKHPDMKELALKAQAIARDFDVISYTWIPRAENSEADAL 124
Query: 195 ANMGI 199
AN +
Sbjct: 125 ANQAM 129
>gi|257389105|ref|YP_003178878.1| ribonuclease H [Halomicrobium mukohataei DSM 12286]
gi|257171412|gb|ACV49171.1| ribonuclease H [Halomicrobium mukohataei DSM 12286]
Length = 197
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G VL +DG +V E +G ATNN AEYRAL+ L+ A G+
Sbjct: 73 FDGASRGNPGPAAVGWVLVTDDG-IVADGGERIGTATNNQAEYRALLRVLEVARDHGFDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
IR++GDS+L+ Q++G W N+ L +A+E F+ + I H+ R +N+ AD AN
Sbjct: 132 IRLRGDSELIVKQVRGEWNTNDPELREHRVDAREGLMAFEEWSIEHVPREINARADELAN 191
>gi|158320317|ref|YP_001512824.1| ribonuclease H [Alkaliphilus oremlandii OhILAs]
gi|158140516|gb|ABW18828.1| ribonuclease H [Alkaliphilus oremlandii OhILAs]
Length = 134
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 75/119 (63%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG S+GNPG AG G ++ +DG+++ + + +G TNNVAEY+AL GL+ AL G + I
Sbjct: 11 DGGSRGNPGIAGIGVSIQDKDGNIIREISQYIGEQTNNVAEYKALSRGLEVALDLGIEKI 70
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
DS+LV QI+G +K+ N+ + + L ++F+SF INH+ R LN AD AN
Sbjct: 71 TCYLDSELVVKQIKGEYKVKNERMIPMYNMVMPLVKEFKSFSINHVRRELNKRADQLAN 129
>gi|448668045|ref|ZP_21686288.1| ribonuclease H [Haloarcula amylolytica JCM 13557]
gi|445768703|gb|EMA19782.1| ribonuclease H [Haloarcula amylolytica JCM 13557]
Length = 198
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G VL +D +V E +G ATNN AEY+ALI ++ A G+
Sbjct: 74 FDGASRGNPGPASVGYVL-VDDSGIVAEGGETIGTATNNQAEYKALIRAVEVARDYGFDD 132
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ ++GDS+L+ Q++G W N+ +L +EL F +QI H+ R +N AD AN
Sbjct: 133 VHIRGDSELIVKQVRGEWDTNDPDLRESRVRVRELLTDFDDWQIEHVPREINDRADELAN 192
>gi|108800308|ref|YP_640505.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. MCS]
gi|119869436|ref|YP_939388.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. KMS]
gi|126435931|ref|YP_001071622.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. JLS]
gi|108770727|gb|ABG09449.1| Phosphoglycerate mutase [Mycobacterium sp. MCS]
gi|119695525|gb|ABL92598.1| Phosphoglycerate mutase [Mycobacterium sp. KMS]
gi|126235731|gb|ABN99131.1| Phosphoglycerate mutase [Mycobacterium sp. JLS]
Length = 365
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG G+V+ +ED SV+ ++ +G ATNNVAEYR LI GL+ A G
Sbjct: 5 VEADGGSRGNPGPAGYGSVVWSEDRSSVLAEAKQSIGRATNNVAEYRGLIAGLEEAANVG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKL+ Q+ G W++ + +L L + A+EL E F + I R N+ AD
Sbjct: 65 ATEVAVSMDSKLIVEQMAGRWRVKHPDLIPLYQRARELAEGFDRVTYSWIPRAANARADR 124
Query: 194 QAN 196
AN
Sbjct: 125 LAN 127
>gi|357019521|ref|ZP_09081774.1| bifunctional RNase H/acid phosphatase [Mycobacterium
thermoresistibile ATCC 19527]
gi|356480694|gb|EHI13809.1| bifunctional RNase H/acid phosphatase [Mycobacterium
thermoresistibile ATCC 19527]
Length = 365
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ A+ G V+ ++ +G ATNNVAEYR LI GL+ A +
Sbjct: 3 VIVEADGGSRGNPGPAGYGAVVYSADSGEVLAETKQSIGRATNNVAEYRGLIAGLEQAAR 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G W++ + +L L ++AK L +F + R NS A
Sbjct: 63 VGATEVEVRMDSKLVVEQMAGRWRVKHPDLQPLSQQAKTLAARFGRVSYRWVPRAENSRA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|338536844|ref|YP_004670178.1| ribonuclease H [Myxococcus fulvus HW-1]
gi|337262940|gb|AEI69100.1| ribonuclease H [Myxococcus fulvus HW-1]
Length = 212
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 78/122 (63%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA++GNPG AGAGAVL G+VV R+ +G TNN AEY L+LGLK+A G + +
Sbjct: 87 DGAARGNPGPAGAGAVLMDPTGNVVARVGRFLGHQTNNCAEYMGLLLGLKHAQSLGAREV 146
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
V DS+L+ Q+ G +++ + L L +EA++L + F +++H+ R N+EAD +N
Sbjct: 147 DVYADSELLIRQLGGRYQVKSATLKPLYEEARKLLKGFAKVKLHHVPRAQNAEADEMSNR 206
Query: 198 GI 199
I
Sbjct: 207 AI 208
>gi|134098170|ref|YP_001103831.1| bifunctional ribonuclease H/phosphoglycerate mutase
[Saccharopolyspora erythraea NRRL 2338]
gi|291007551|ref|ZP_06565524.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Saccharopolyspora erythraea NRRL 2338]
gi|133910793|emb|CAM00906.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Saccharopolyspora erythraea NRRL 2338]
Length = 366
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R A G V+ G+G ATNN AEYR LI GL A++
Sbjct: 5 VVIEADGGSRGNPGPAGCGAVVRDATSGEVLAERSVGLGTATNNAAEYRGLIEGLSAAVE 64
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + I V+ DSKLV Q+ G WK+ + NL L ++A+ L F + + R N+ A
Sbjct: 65 LGAEAIEVRMDSKLVIEQMAGRWKVKHANLQPLAEKARALLAGFGEVDLEWVPRARNAHA 124
Query: 192 DAQAN 196
D AN
Sbjct: 125 DRLAN 129
>gi|381164574|ref|ZP_09873804.1| fructose-2,6-bisphosphatase [Saccharomonospora azurea NA-128]
gi|418462853|ref|ZP_13033889.1| fructose-2,6-bisphosphatase [Saccharomonospora azurea SZMC 14600]
gi|359735516|gb|EHK84476.1| fructose-2,6-bisphosphatase [Saccharomonospora azurea SZMC 14600]
gi|379256479|gb|EHY90405.1| fructose-2,6-bisphosphatase [Saccharomonospora azurea NA-128]
Length = 398
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 76/136 (55%), Gaps = 4/136 (2%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R G V+ ++G+GIATNNVAEY LI GL+ A +
Sbjct: 5 VVVEADGGSRGNPGPAGYGAVVRDPRTGEVLAERQDGLGIATNNVAEYTGLIAGLEAAAE 64
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + + DSKLV Q+ G WKI N L L A+E+ F+ + R N+ A
Sbjct: 65 LGASTVEARLDSKLVVEQMSGRWKIKNAALQPLALRAREVASGFERVTYTWVPRAKNAHA 124
Query: 192 DAQANMGIYLKDGQVE 207
D AN + D Q E
Sbjct: 125 DRLANEAM---DAQAE 137
>gi|354612078|ref|ZP_09030030.1| ribonuclease H [Halobacterium sp. DL1]
gi|353191656|gb|EHB57162.1| ribonuclease H [Halobacterium sp. DL1]
Length = 198
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGA +GNPG + G VL + DG +V E +G ATNN AEY AL+ GL+ A Q G+
Sbjct: 74 FDGACRGNPGPSAVGWVLVSGDG-IVAEDGETIGRATNNQAEYEALLAGLQAADQFGFDE 132
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G W N+ +L +EL E+F + + H+ R +N AD AN
Sbjct: 133 VEVRGDSQLIVKQVKGAWDTNDPDLREKRVAVRELLERFDDWSLTHVPREVNDRADELAN 192
Query: 197 MGI 199
+
Sbjct: 193 EAL 195
>gi|333918915|ref|YP_004492496.1| phosphoglycerate mutase [Amycolicicoccus subflavus DQS3-9A1]
gi|333481136|gb|AEF39696.1| Phosphoglycerate mutase [Amycolicicoccus subflavus DQS3-9A1]
Length = 360
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV L +D +V+ ++ +GIATNNVAEY LI GL+ A + G
Sbjct: 3 IEADGGSRGNPGPAGYGAVVLDPDDRTVLAERKQAIGIATNNVAEYSGLIAGLEAATEVG 62
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
V+ DSKLV Q+ G WK+ + ++ L + A EL + F + + R N+ AD
Sbjct: 63 AHEAEVRMDSKLVVEQMSGRWKVKHPDMIPLARRAAELAQAFSHVEYRWVPRADNAHADR 122
Query: 194 QAN 196
AN
Sbjct: 123 LAN 125
>gi|384564675|ref|ZP_10011779.1| fructose-2,6-bisphosphatase [Saccharomonospora glauca K62]
gi|384520529|gb|EIE97724.1| fructose-2,6-bisphosphatase [Saccharomonospora glauca K62]
Length = 387
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R D G V+ + G+G+ TNNVAEY LI GL+ A +
Sbjct: 5 VVVEADGGSRGNPGPAGYGAVVRDPDTGDVLAERQAGLGVTTNNVAEYNGLIAGLEAAAE 64
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + + DSKLV Q+ G WKI N L L +EL +F + R N+ A
Sbjct: 65 LGASTVEARLDSKLVVEQMNGRWKIKNAMLQPLALRVRELARRFDRVTYTWVPRERNAHA 124
Query: 192 DAQANMGIYLKDGQVE 207
D AN + D Q E
Sbjct: 125 DRLANEAM---DAQAE 137
>gi|448498360|ref|ZP_21610793.1| ribonuclease H [Halorubrum coriense DSM 10284]
gi|445698781|gb|ELZ50820.1| ribonuclease H [Halorubrum coriense DSM 10284]
Length = 198
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G L DG VV EGVG ATNN AEY ALI L+ A + G+
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDG-VVAEGGEGVGRATNNQAEYAALIRALEAADEYGFDA 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G W N+ L A+EL +F + I H+ R +N AD AN
Sbjct: 132 VDVRGDSQLIVKQVRGEWDANDPELRERRVRARELLTRFDRWSIAHVPREINERADDLAN 191
Query: 197 MGI 199
+
Sbjct: 192 KAL 194
>gi|407643380|ref|YP_006807139.1| bifunctional RNase H/acid phosphatase [Nocardia brasiliensis ATCC
700358]
gi|407306264|gb|AFU00165.1| bifunctional RNase H/acid phosphatase [Nocardia brasiliensis ATCC
700358]
Length = 377
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ A D V+ RE +G+ATNNVAEYR LI GL+ + +
Sbjct: 6 VIVEADGGSRGNPGPAGYGAVVYAADHVRVLAERREFIGVATNNVAEYRGLIAGLEASAE 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + + V+ DSKLV Q+ G WK+ + + L A+ L F I RN N+ A
Sbjct: 66 LGAQVVAVRMDSKLVVEQMSGRWKVKHAAMIPLADRARRLVAGFDRVSFTWIPRNENAHA 125
Query: 192 DAQAN 196
D AN
Sbjct: 126 DRLAN 130
>gi|302342840|ref|YP_003807369.1| ribonuclease H [Desulfarculus baarsii DSM 2075]
gi|301639453|gb|ADK84775.1| ribonuclease H [Desulfarculus baarsii DSM 2075]
Length = 202
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 81/130 (62%)
Query: 70 CYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYA 129
++ TL DG ++GNPG AGAGAV+ + G+ + L +G ATNNVAEY+AL++GL+ A
Sbjct: 68 AFAATLYADGGARGNPGPAGAGAVIYDQSGAQIAALSRYLGQATNNVAEYQALLMGLEAA 127
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
L+ G I V+ DS+L+ Q+ G +++ +L L ++AK L ++F I H+ R N
Sbjct: 128 LELGVGQIDVRLDSELLVKQLGGQYQVKAPHLKPLFQKAKALLQQFTGAHIVHVRREQNG 187
Query: 190 EADAQANMGI 199
AD AN +
Sbjct: 188 VADGLANQAM 197
>gi|448689534|ref|ZP_21695118.1| ribonuclease H [Haloarcula japonica DSM 6131]
gi|445777805|gb|EMA28765.1| ribonuclease H [Haloarcula japonica DSM 6131]
Length = 198
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G VL +D +V E +G ATNN AEY+ALI ++ A G+
Sbjct: 74 FDGASRGNPGPASVGYVL-VDDSGIVTEGGETIGTATNNQAEYKALIRAVEVARDYGFDD 132
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ ++GDS+L+ Q++G W N+ L +EL F +QI H+ R +N AD AN
Sbjct: 133 VHIRGDSELIVKQVRGEWDTNDPELRENRVRVRELLTDFDDWQIEHVPREINDRADELAN 192
>gi|168699254|ref|ZP_02731531.1| ribonuclease H [Gemmata obscuriglobus UQM 2246]
Length = 212
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+ T+ DGAS+GNPG A A AV+ A G V + +G A+NNVAEY AL+ GL A +
Sbjct: 4 TATMHIDGASRGNPG-AAAYAVVLARPGLPVVEEADTIGTASNNVAEYTALVEGLGLAAE 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K ++V DS+L+ Q+ G +K+ N++L L +EA L+++F+S I H+ R N A
Sbjct: 63 LGVKQLQVFSDSELMVKQMAGAYKVKNEDLRTLYEEACRLRKQFESVTITHVRREQNKRA 122
Query: 192 DAQANM---GIYLKDGQVEAECSS 212
DA N G K GQV +
Sbjct: 123 DAIGNEALDGRPRKRGQVPPPVHT 146
>gi|392417072|ref|YP_006453677.1| fructose-2,6-bisphosphatase [Mycobacterium chubuense NBB4]
gi|390616848|gb|AFM17998.1| fructose-2,6-bisphosphatase [Mycobacterium chubuense NBB4]
Length = 369
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ + D S++ +G ATNNVAEYR LI GL+ A +
Sbjct: 3 VIVEADGGSRGNPGPAGFGAVVWSADHRSILAETSSAIGRATNNVAEYRGLIAGLQAASE 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKLV Q+ G W++ + +LA L ++A+++ F I R+ NS A
Sbjct: 63 VGATEADVYMDSKLVVEQMAGRWRVKHPDLAPLHQQARDIANTFDRISYTWIPRDKNSHA 122
Query: 192 DAQANMGIYLKDGQV 206
D AN + + G+V
Sbjct: 123 DGLANKAMDVAAGEV 137
>gi|406904481|gb|EKD46245.1| ribonuclease HI [uncultured bacterium]
Length = 136
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 5/129 (3%)
Query: 68 YNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
Y YS DG ++GNPG+A G +++ + G +YRL + +GIATNN AEY ALI GLK
Sbjct: 2 YQMYS-----DGGARGNPGRAATGIIIKDQTGKTLYRLSKYLGIATNNQAEYAALIQGLK 56
Query: 128 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
+ QKG K + DS+LV Q+ GL++I +Q + ++ L KF+ HI R
Sbjct: 57 FLTQKGIKIVACYLDSELVVRQLNGLYRIKDQKIKEKYQQLSLLISKFKKVTFKHIYREN 116
Query: 188 NSEADAQAN 196
N EAD N
Sbjct: 117 NVEADKLVN 125
>gi|448679145|ref|ZP_21689982.1| ribonuclease H [Haloarcula argentinensis DSM 12282]
gi|445771243|gb|EMA22300.1| ribonuclease H [Haloarcula argentinensis DSM 12282]
Length = 198
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG + G VL +D +V E +G ATNN AEYRALI ++ A G+
Sbjct: 74 FDGASRGNPGPSSVGYVL-VDDSGIVTEGGETIGTATNNQAEYRALIRAIEVARDYGFDD 132
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ ++GDS+L+ Q++G W N+ L +EL F +QI H+ R +N AD AN
Sbjct: 133 VHIRGDSELIVKQVRGEWDTNDPELRENRVRVRELLTGFDDWQIEHVPREINDRADELAN 192
>gi|218441128|ref|YP_002379457.1| ribonuclease H [Cyanothece sp. PCC 7424]
gi|218173856|gb|ACK72589.1| ribonuclease H [Cyanothece sp. PCC 7424]
Length = 313
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L FDG S+GNPG+A AV+ +G Y + + + IATNN AEY LI+GLK A + G
Sbjct: 11 LYFDGGSRGNPGEAAGAAVIVMANGQH-YAVSKYLKIATNNEAEYTGLIIGLKQAQELGI 69
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
K + V+GDS+L+ QI G WK+N+ +L EAK+L + F+ +N I RN N AD +
Sbjct: 70 KELIVKGDSQLIINQITGKWKVNSPHLKEFYHEAKQLIKNFEQITLNWIRRNENQLADTE 129
Query: 195 AN 196
N
Sbjct: 130 VN 131
>gi|310823614|ref|YP_003955972.1| ribonuclease h [Stigmatella aurantiaca DW4/3-1]
gi|309396686|gb|ADO74145.1| Ribonuclease H [Stigmatella aurantiaca DW4/3-1]
Length = 205
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 76/122 (62%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA++GNPG AGAGAVL G VV R+ + +G TNN AEY L++GLK+A G K I
Sbjct: 80 DGAARGNPGPAGAGAVLIEPGGQVVARIGKFLGQQTNNYAEYMGLLIGLKHARGLGTKEI 139
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+L+ Q+ G +++ + L L +EA +L F ++ H+ R +N+EAD +N
Sbjct: 140 EIFADSELLIRQLGGRYQVKSPTLRPLYEEAVKLLNDFSRVKLVHVPREMNAEADEMSNR 199
Query: 198 GI 199
I
Sbjct: 200 AI 201
>gi|300087256|ref|YP_003757778.1| ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299526989|gb|ADJ25457.1| ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 133
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 76/122 (62%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG A G ++++ G VV + +G TNN AEYRA+I L+ + ++G H+
Sbjct: 9 DGASRGNPGAAALGVIIKSGQGEVVKEISLCLGRLTNNQAEYRAVIAALEESGRQGATHL 68
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
R+ DS+LV Q+ G++++ N LA L KEL+++F+ H+ R N EADA AN
Sbjct: 69 RINADSELVVKQLNGIYRVKNPGLAPLALRVKELEKRFEKVIYCHVPRERNREADALANR 128
Query: 198 GI 199
+
Sbjct: 129 AL 130
>gi|448634470|ref|ZP_21674868.1| ribonuclease H [Haloarcula vallismortis ATCC 29715]
gi|445749443|gb|EMA00888.1| ribonuclease H [Haloarcula vallismortis ATCC 29715]
Length = 198
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G VL +D +V E +G ATNN AEY+ALI ++ A G+
Sbjct: 74 FDGASRGNPGPASVGYVL-VDDSGIVTEGGETIGTATNNQAEYKALIRAIEVARNYGFDD 132
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ ++GDS+L+ Q++G W N+ L +EL F +QI H+ R +N AD AN
Sbjct: 133 VHIRGDSELIVKQVRGEWDTNDPELRENRVRVRELLTDFDDWQIEHVPREINDRADELAN 192
>gi|288573975|ref|ZP_06392332.1| ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288569716|gb|EFC91273.1| ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 195
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG AGAGA L ++ +V+R E +G TNN AEY A IL LK L++G
Sbjct: 7 FDGGSRGNPGIAGAGAALYDDENRLVWRGAEPLGERTNNEAEYMAAILVLKEVLRRGLSE 66
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I + GDSKLV Q+ G WKI L L +E K L K S + + R NSEAD AN
Sbjct: 67 IELCGDSKLVINQLSGAWKIKEPRLGVLAEEFKALA-KGLSVRFRWVPRKDNSEADRMAN 125
Query: 197 MGI 199
+ +
Sbjct: 126 LAM 128
>gi|332705263|ref|ZP_08425344.1| riibonuclease HI [Moorea producens 3L]
gi|332356006|gb|EGJ35465.1| riibonuclease HI [Moorea producens 3L]
Length = 286
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 5/148 (3%)
Query: 61 LNTQSVPYNCYSC----TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNV 116
+N QSV T+ FDG S+GNPG AGA A+++ + G+ + + ATNN
Sbjct: 1 MNNQSVNLTAKKTNSKLTILFDGGSRGNPGIAGAAAIIK-QPGAQTISVSKFFPHATNNE 59
Query: 117 AEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ 176
AEY ILGL+ AL+ G + ++GDS+LV Q++G W++ +L L +AK L +F
Sbjct: 60 AEYNGAILGLEKALEIGAGQVVLKGDSQLVINQLKGTWRVKTPHLRPLWTKAKSLLNQFD 119
Query: 177 SFQINHILRNLNSEADAQANMGIYLKDG 204
S ++ I R NSEADA AN + + G
Sbjct: 120 SVKLEWIPRAQNSEADAAANQAMDQRKG 147
>gi|408791409|ref|ZP_11203019.1| ribonuclease HI [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408462819|gb|EKJ86544.1| ribonuclease HI [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 137
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 77/126 (61%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG+S+GNPG A G + DG + L E +G ATNNVAE++AL G++ A+ + + I
Sbjct: 12 DGSSRGNPGPAAIGVSFQNNDGVEFFFLSEKIGNATNNVAEWQALYRGMEEAINQNLQKI 71
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
R + DS+LV Q++G +K+ N++L + LK FQ+F+I +I R NS AD AN+
Sbjct: 72 RFRLDSELVVKQMKGEYKVKNKDLLVFKTKCDTLKSSFQNFEIQYIPREQNSRADQLANL 131
Query: 198 GIYLKD 203
KD
Sbjct: 132 AQDKKD 137
>gi|55379866|ref|YP_137716.1| ribonuclease H-like protein [Haloarcula marismortui ATCC 43049]
gi|448641109|ref|ZP_21677896.1| ribonuclease H [Haloarcula sinaiiensis ATCC 33800]
gi|55232591|gb|AAV48010.1| ribonuclease H-like protein [Haloarcula marismortui ATCC 43049]
gi|445761634|gb|EMA12882.1| ribonuclease H [Haloarcula sinaiiensis ATCC 33800]
Length = 198
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G VL D +V E +G ATNN AEY+ALI ++ A G+
Sbjct: 74 FDGASRGNPGPASVGYVL-VNDSGIVTEGGETIGTATNNQAEYKALIRAVEVARDYGFDD 132
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ ++GDS+L+ Q++G W N+ L +EL F +QI H+ R +N AD AN
Sbjct: 133 VHIRGDSELIVKQVRGEWDTNDPELREHRVRVRELLTDFDDWQIEHVPREINDRADELAN 192
>gi|435854551|ref|YP_007315870.1| ribonuclease HI [Halobacteroides halobius DSM 5150]
gi|433670962|gb|AGB41777.1| ribonuclease HI [Halobacteroides halobius DSM 5150]
Length = 134
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 78/130 (60%), Gaps = 4/130 (3%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+ T+ DG S+GNPG AG GAV+ +G V L E +G ATNNVAEY+A+ILGLK L
Sbjct: 3 NLTMYTDGGSRGNPGPAGVGAVIY-NNGQKVEELFEYIGRATNNVAEYKAVILGLKL-LA 60
Query: 132 KGYKH--IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
Y I ++ DS+L+ Q+ G +K+ + NL L ++ KEL F + HI R N
Sbjct: 61 DNYSQAKIEIKADSQLLVKQLTGEYKVKSDNLKPLYQQIKELITNFSKVEFTHIPREENK 120
Query: 190 EADAQANMGI 199
EADA AN +
Sbjct: 121 EADALANQAM 130
>gi|379746935|ref|YP_005337756.1| phosphoglycerate mutase [Mycobacterium intracellulare ATCC 13950]
gi|379754209|ref|YP_005342881.1| phosphoglycerate mutase [Mycobacterium intracellulare MOTT-02]
gi|378799299|gb|AFC43435.1| phosphoglycerate mutase [Mycobacterium intracellulare ATCC 13950]
gi|378804425|gb|AFC48560.1| phosphoglycerate mutase [Mycobacterium intracellulare MOTT-02]
Length = 379
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ ED +V+ ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTEDRATVLVENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGASEAAVYLDSKLLVEQMSGRWKVKHPDLIELHAQARALAARFDRISYSWIPRERNSHA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|448654581|ref|ZP_21681507.1| ribonuclease H [Haloarcula californiae ATCC 33799]
gi|445766429|gb|EMA17556.1| ribonuclease H [Haloarcula californiae ATCC 33799]
Length = 198
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G VL D +V E +G ATNN AEY+ALI ++ A G+
Sbjct: 74 FDGASRGNPGPASVGYVL-VNDSGIVTEGGETIGTATNNQAEYKALIRAVEVARDYGFDD 132
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ ++GDS+L+ Q++G W N+ L +EL F +QI H+ R +N AD AN
Sbjct: 133 VHIRGDSELIIKQVRGEWDTNDPELREHRVRVRELLTDFDDWQIEHVPREINDRADELAN 192
>gi|383458169|ref|YP_005372158.1| ribonuclease H [Corallococcus coralloides DSM 2259]
gi|380734174|gb|AFE10176.1| ribonuclease H [Corallococcus coralloides DSM 2259]
Length = 216
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 78/122 (63%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA++GNPG AGAGAVL +G+VV RL + +G TNN AEY L++GL++A G + +
Sbjct: 91 DGAARGNPGPAGAGAVLMNAEGAVVARLGKFLGHQTNNYAEYMGLLIGLQHAKSLGAREV 150
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
V DS+L+ Q+ G +++ + L L +EA++L F ++ H+ R N+EAD +N
Sbjct: 151 EVFADSELLIRQLGGKYQVKSPTLKPLFQEAQKLLATFGKVKLAHVPRAQNAEADEMSNR 210
Query: 198 GI 199
I
Sbjct: 211 AI 212
>gi|258653438|ref|YP_003202594.1| phosphoglycerate mutase [Nakamurella multipartita DSM 44233]
gi|258556663|gb|ACV79605.1| Phosphoglycerate mutase [Nakamurella multipartita DSM 44233]
Length = 370
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 74/132 (56%)
Query: 65 SVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALIL 124
S P ++ DG S+GNPG AG GAV+ + G+V+ +G ATNNVAEY LI
Sbjct: 2 SAPQQANHVVVQADGGSRGNPGPAGYGAVVFDDQGAVLAERAASIGRATNNVAEYGGLIA 61
Query: 125 GLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
GL+ AL+ G + VQ DSKLV Q+ G WK+ + ++ L A L +F+ + +
Sbjct: 62 GLEAALELGAVTVAVQMDSKLVVEQMSGRWKVKHPDIKPLASRAAGLVAQFERVTFDWLP 121
Query: 185 RNLNSEADAQAN 196
R N+ AD AN
Sbjct: 122 RARNAHADRLAN 133
>gi|115373690|ref|ZP_01460984.1| RNase H [Stigmatella aurantiaca DW4/3-1]
gi|115369237|gb|EAU68178.1| RNase H [Stigmatella aurantiaca DW4/3-1]
Length = 177
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 76/122 (62%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA++GNPG AGAGAVL G VV R+ + +G TNN AEY L++GLK+A G K I
Sbjct: 52 DGAARGNPGPAGAGAVLIEPGGQVVARIGKFLGQQTNNYAEYMGLLIGLKHARGLGTKEI 111
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+L+ Q+ G +++ + L L +EA +L F ++ H+ R +N+EAD +N
Sbjct: 112 EIFADSELLIRQLGGRYQVKSPTLRPLYEEAVKLLNDFSRVKLVHVPREMNAEADEMSNR 171
Query: 198 GI 199
I
Sbjct: 172 AI 173
>gi|387875463|ref|YP_006305767.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. MOTT36Y]
gi|443305225|ref|ZP_21035013.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. H4Y]
gi|386788921|gb|AFJ35040.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. MOTT36Y]
gi|442766789|gb|ELR84783.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. H4Y]
Length = 379
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ ED +V+ ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTEDRATVLAENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGASEAAVYLDSKLLVEQMSGRWKVKHPDLIELHAQARALAARFDRISYSWIPRERNSHA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|258450521|gb|ACV72190.1| ribonuclease H [uncultured organism]
Length = 161
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L DGAS+ NPG A G VL+ G ++ E +G TNNVAEYRAL+ GL+ A
Sbjct: 29 SAILWSDGASRNNPGPAAIGVVLKRPTGELLASDAEYIGKTTNNVAEYRALLRGLERARA 88
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G +++ V+ DS+L+ Q+QG +++ N L L +EAKE F S ++ H+ R LN+E
Sbjct: 89 LGVRNLEVRADSELLIRQLQGQYRVKNAALKPLWEEAKERLSHFASVRLKHVRRELNTE 147
>gi|406030331|ref|YP_006729222.1| bifunctional RNase H/acid phosphatase [Mycobacterium indicus pranii
MTCC 9506]
gi|405128878|gb|AFS14133.1| Bifunctional RNase H/acid phosphatase [Mycobacterium indicus pranii
MTCC 9506]
Length = 379
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ ED +V+ ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTEDRATVLAENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGASEAAVYLDSKLLVEQMSGRWKVKHPDLIELHAQARALAARFDRISYSWIPRERNSHA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|379761544|ref|YP_005347941.1| phosphoglycerate mutase [Mycobacterium intracellulare MOTT-64]
gi|378809486|gb|AFC53620.1| phosphoglycerate mutase [Mycobacterium intracellulare MOTT-64]
Length = 379
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ ED +V+ ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTEDRATVLAENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGASEAAVYLDSKLLVEQMSGRWKVKHPDLIELNAQARALAARFDRISYSWIPRERNSHA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|448589960|ref|ZP_21650019.1| ribonuclease H [Haloferax elongans ATCC BAA-1513]
gi|445735075|gb|ELZ86628.1| ribonuclease H [Haloferax elongans ATCC BAA-1513]
Length = 197
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G V+ DG +V + +G TNN AEY AL+ L A + GY
Sbjct: 73 FDGASRGNPGPAAIGWVIVTSDG-IVAEGSKRIGKTTNNRAEYEALVEALTAAAEYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G WK N+ L +EL ++F + + H+ R +N AD+ AN
Sbjct: 132 VDVRGDSQLIVKQVRGEWKTNDPGLREHRVTVRELLDRFDRWSLEHVPREINDHADSLAN 191
>gi|448492137|ref|ZP_21608731.1| ribonuclease H [Halorubrum californiensis DSM 19288]
gi|445691596|gb|ELZ43780.1| ribonuclease H [Halorubrum californiensis DSM 19288]
Length = 198
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G L DG VV E +G ATNN AEY ALI L+ A + G+
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDG-VVAEGGERIGRATNNQAEYAALIRALEAADEYGFDA 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L QI+G W N+ L A+EL E+F + I H+ R +N AD AN
Sbjct: 132 VDVRGDSQLTVKQIRGEWNTNDPELRERRVRARELLERFDRWSIAHVPREINERADDLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|448531797|ref|ZP_21621085.1| ribonuclease H [Halorubrum hochstenium ATCC 700873]
gi|445707002|gb|ELZ58870.1| ribonuclease H [Halorubrum hochstenium ATCC 700873]
Length = 198
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G L DG VV E +G ATNN AEY AL+ L+ A + G+
Sbjct: 73 FDGASRGNPGPASVGWCLVTSDG-VVAEGGERIGRATNNQAEYAALVRALEAADEYGFDA 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G W N+ L A+EL E+F + I H+ R +N AD AN
Sbjct: 132 VDVRGDSELIVKQVRGEWNANDPELRERRVRARELLERFDRWSIAHVPREINERADDLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|383776499|ref|YP_005461065.1| putative bifunctional ribonuclease H/phosphoglycerate mutase
[Actinoplanes missouriensis 431]
gi|381369731|dbj|BAL86549.1| putative bifunctional ribonuclease H/phosphoglycerate mutase
[Actinoplanes missouriensis 431]
Length = 369
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV++ A G ++ + G+ TNNVAEY LI GL+ A +
Sbjct: 5 VIVEADGGSRGNPGPAGFGAVVKEAATGEILLERYDSAGVTTNNVAEYSGLIAGLRAAAE 64
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+ V+ DSKLV Q+ G W+I N L L EA L KF + I R N +A
Sbjct: 65 LNATRVDVRMDSKLVIEQMSGRWQIKNAGLRPLAAEAATLVGKFDEVTFDWIPRERNKDA 124
Query: 192 DAQAN 196
DA AN
Sbjct: 125 DALAN 129
>gi|269791797|ref|YP_003316701.1| ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
gi|269099432|gb|ACZ18419.1| ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 132
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG AGAGA+L EDG VV+ RE +G TNN AEY ALI L+ A +G
Sbjct: 6 FDGASRGNPGPAGAGALLEDEDGRVVWEHREYLGRRTNNEAEYWALIALLEEARSRGIDR 65
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ-SFQINHILRNLNSEADAQA 195
+ GDS+LV Q+ WKIN +L L + EL E SF+ I R N AD +
Sbjct: 66 LIAMGDSQLVVSQVTRKWKINMPHLRELARRVWELSEGMDVSFR--WIPREENRRADRLS 123
Query: 196 NMGI 199
N I
Sbjct: 124 NQAI 127
>gi|448434667|ref|ZP_21586441.1| ribonuclease H [Halorubrum tebenquichense DSM 14210]
gi|445684663|gb|ELZ37036.1| ribonuclease H [Halorubrum tebenquichense DSM 14210]
Length = 198
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G L DG VV E +G ATNN AEY ALI L+ A + G+
Sbjct: 73 FDGASRGNPGPASVGWCLVTSDG-VVAEGGERIGRATNNQAEYAALIRALEGADEYGFDA 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G W N+ L A+EL E+F + I H+ R +N AD AN
Sbjct: 132 VDVRGDSELIVKQVRGEWNANDPELRERRVRARELLERFDRWSIAHVPREINERADDLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|145595869|ref|YP_001160166.1| phosphoglycerate mutase [Salinispora tropica CNB-440]
gi|145305206|gb|ABP55788.1| Phosphoglycerate mutase [Salinispora tropica CNB-440]
Length = 412
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAE-DGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAVLR G V+ +G ATNNVAEYR LI GL+ A++
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVLRDPGTGEVLAERSAAIGTATNNVAEYRGLIAGLEAAVE 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
G + + DSKLV Q+ G W+I N L L +A L ++F + + I RN N
Sbjct: 66 LGAAEVEARLDSKLVVEQMCGRWQIKNPGLRPLAAQAARLVDQFTAVRFTWIPRNRN 122
>gi|206891174|ref|YP_002248860.1| RNase H [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206743112|gb|ACI22169.1| RNase H [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 132
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG AG G V+ ++ V + E +G TNNVAEY ALI GL+ AL++ + I
Sbjct: 8 DGASRGNPGDAGIGCVIIFDNKKV--EISEYIGKTTNNVAEYTALIKGLEEALRQKAQEI 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 195
+ DS+L+ QI G++K+ N+NL L ++AK+L F+ +QI HI R N AD A
Sbjct: 66 EIFSDSELLVHQINGIYKVRNKNLVPLYEKAKKLLSNFKKYQIFHIYRENNFIADKLA 123
>gi|392375794|ref|YP_003207627.1| RNase H [Candidatus Methylomirabilis oxyfera]
gi|258593487|emb|CBE69826.1| RNase H [Candidatus Methylomirabilis oxyfera]
Length = 160
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%)
Query: 61 LNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYR 120
L+T P + + DGA++GNPG AG G +L AEDG + + +G ATNNVAEY+
Sbjct: 7 LDTGQAPPGLH-LVIHIDGAARGNPGPAGIGVMLEAEDGLLRRTFYQYIGKATNNVAEYK 65
Query: 121 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS--- 177
AL+L L+ A + ++++ DS+L+ Q+QG +++ + LA L +A L + +
Sbjct: 66 ALLLSLREAEKLQPAVVKIRSDSELLVRQVQGRYRVKSPRLAELYTQALNLMHQLSTASC 125
Query: 178 -FQINHILRNLNSEADAQANMGI 199
+ HI R LN +ADA AN I
Sbjct: 126 RLSVEHIGRELNRQADALANRAI 148
>gi|291302271|ref|YP_003513549.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728]
gi|290571491|gb|ADD44456.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728]
Length = 137
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 71/124 (57%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+E DG S+GNPG AG GAV+ E G + + +GIATNNVAEY LI GL A +
Sbjct: 7 VIVEADGGSRGNPGPAGYGAVVLDETGQELMDRQGFLGIATNNVAEYSGLIAGLTAAREL 66
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G ++ V+ DSKLV Q+ G WK+ + L L EA L +F S I R N+ AD
Sbjct: 67 GAANVAVRMDSKLVVEQMNGNWKVRHPGLRPLAAEAAALVRQFDSVTFTWIPRADNTRAD 126
Query: 193 AQAN 196
A AN
Sbjct: 127 ALAN 130
>gi|289432255|ref|YP_003462128.1| ribonuclease H [Dehalococcoides sp. GT]
gi|288945975|gb|ADC73672.1| ribonuclease H [Dehalococcoides sp. GT]
Length = 134
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG A G L+ E + V + + +G ATNN AEY+AL+ GL+ A G K +
Sbjct: 9 DGASRGNPGPASIGVTLKDEKNNPVACISKAIGHATNNQAEYQALLAGLEKAASLGAKEL 68
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
++ DS+L+ QI+G +++ N+ L L +A L +F+ +QI +I R NSEADA AN
Sbjct: 69 EIRSDSELLVKQIKGEYRMKNEGLKPLFSKAVSLLGRFERYQIKYIPRAQNSEADALANK 128
Query: 198 GI 199
+
Sbjct: 129 AL 130
>gi|453074656|ref|ZP_21977448.1| bifunctional RNase H/acid phosphatase [Rhodococcus triatomae BKS
15-14]
gi|452764266|gb|EME22537.1| bifunctional RNase H/acid phosphatase [Rhodococcus triatomae BKS
15-14]
Length = 366
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV+ A+ G+V+ +G+GIATNNVAEY LI GL A + G
Sbjct: 5 VEADGGSRGNPGPAGYGAVVFDADTGAVLAERCDGLGIATNNVAEYNGLIAGLSAAAELG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ + + DSKLV Q+ G WK+ + ++ L + A+E+ + F I R N+ AD
Sbjct: 65 AEVVDARMDSKLVVEQMSGRWKVKHPDMIPLARRAREIADGFARVTYTWIPRAENAHADR 124
Query: 194 QAN 196
AN
Sbjct: 125 LAN 127
>gi|254822754|ref|ZP_05227755.1| bifunctional RNase H/acid phosphatase [Mycobacterium intracellulare
ATCC 13950]
Length = 159
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ ED +V+ ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTEDRATVLAENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGASEAAVYLDSKLLVEQMSGRWKVKHPDLIELHAQARALAARFDRISYSWIPRERNSHA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|389846161|ref|YP_006348400.1| ribonuclease HI [Haloferax mediterranei ATCC 33500]
gi|448616219|ref|ZP_21664929.1| ribonuclease H [Haloferax mediterranei ATCC 33500]
gi|388243467|gb|AFK18413.1| ribonuclease HI [Haloferax mediterranei ATCC 33500]
gi|445750874|gb|EMA02311.1| ribonuclease H [Haloferax mediterranei ATCC 33500]
Length = 197
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G + +G +V + +G TNN AEY ALI L A + GY
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSNG-IVAEGSKRIGETTNNRAEYEALIEALSVADEYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G WK N+ L +A+EL E+F + + H+ R +N AD AN
Sbjct: 132 VDVRGDSQLIVKQVRGEWKTNDPGLRERRVKARELLERFDRWSLEHVPREINDRADTLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|296270282|ref|YP_003652914.1| phosphoglycerate mutase [Thermobispora bispora DSM 43833]
gi|296093069|gb|ADG89021.1| Phosphoglycerate mutase [Thermobispora bispora DSM 43833]
Length = 440
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DGA++GNPG AG GAV++ +G V+ E +G+ATNNVAEYR LI GL+ L G
Sbjct: 10 VVEADGAARGNPGPAGYGAVVKDAEGRVLAETAEAIGVATNNVAEYRGLIAGLRALLGLG 69
Query: 134 Y--KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+ + V+ DS+LV Q+ G WK+ ++ L L EA L +F+ + R N A
Sbjct: 70 AEGEPVEVRMDSRLVIEQMSGRWKVKHEGLRPLAAEAAGLARRFR-VTWTWVPREQNGHA 128
Query: 192 DAQANMGI 199
D AN +
Sbjct: 129 DRLANEAV 136
>gi|433648622|ref|YP_007293624.1| fructose-2,6-bisphosphatase [Mycobacterium smegmatis JS623]
gi|433298399|gb|AGB24219.1| fructose-2,6-bisphosphatase [Mycobacterium smegmatis JS623]
Length = 362
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG G V+ A+ +V+ ++ +G ATNNVAEYR LI GL+ A +
Sbjct: 3 VIVEADGGSRGNPGPAGYGLVVWTADRTAVLAESKQAIGSATNNVAEYRGLIAGLEEAAK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V DSKLV Q+ G WK+ + ++A L ++A L +F+ I R NS A
Sbjct: 63 IGATEVDVSMDSKLVVEQMSGRWKVKHPDIAALHQQATALSARFEHITYTWIPRAKNSHA 122
Query: 192 DAQANMGIYLKDGQVEAECSS 212
D AN + D E E +
Sbjct: 123 DRLANEAM---DAATEIEAPA 140
>gi|448450735|ref|ZP_21592468.1| ribonuclease H [Halorubrum litoreum JCM 13561]
gi|448510575|ref|ZP_21615952.1| ribonuclease H [Halorubrum distributum JCM 9100]
gi|448522304|ref|ZP_21618427.1| ribonuclease H [Halorubrum distributum JCM 10118]
gi|445695848|gb|ELZ47947.1| ribonuclease H [Halorubrum distributum JCM 9100]
gi|445702248|gb|ELZ54206.1| ribonuclease H [Halorubrum distributum JCM 10118]
gi|445811246|gb|EMA61254.1| ribonuclease H [Halorubrum litoreum JCM 13561]
Length = 198
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G L DG VV E +G ATNN AEY ALI L+ A + G+
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDG-VVAEGGERIGRATNNQAEYAALIRALEAADEYGFDA 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L Q++G W N+ L A+EL E+F + I H+ R +N AD AN
Sbjct: 132 VDVRGDSQLTVKQVRGEWNANDPELRERRVRARELLERFDRWSIAHVPREINERADDLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|448579976|ref|ZP_21644805.1| ribonuclease H [Haloferax larsenii JCM 13917]
gi|445722649|gb|ELZ74306.1| ribonuclease H [Haloferax larsenii JCM 13917]
Length = 197
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G V+ DG +V + +G TNN AEY AL+ L A + GY
Sbjct: 73 FDGASRGNPGPAAIGWVIVTSDG-IVAEGSKRIGKTTNNRAEYEALVEALTAAAEYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G WK N+ L +EL ++F + + H+ R +N AD+ AN
Sbjct: 132 VDVRGDSQLIVKQVRGEWKTNDPGLREHRVTVRELLDQFDRWSLEHVPREINEHADSLAN 191
>gi|448482041|ref|ZP_21605255.1| ribonuclease H [Halorubrum arcis JCM 13916]
gi|445821443|gb|EMA71234.1| ribonuclease H [Halorubrum arcis JCM 13916]
Length = 198
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G L DG VV E +G ATNN AEY ALI L+ A + G+
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDG-VVAEGGERIGRATNNQAEYAALIRALEAADEYGFDA 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L Q++G W N+ L A+EL E+F + I H+ R +N AD AN
Sbjct: 132 VDVRGDSQLTVKQVRGEWNANDPELRERRVRARELLERFDRWSIAHVPREINERADDLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|448425077|ref|ZP_21582706.1| ribonuclease H [Halorubrum terrestre JCM 10247]
gi|445681337|gb|ELZ33771.1| ribonuclease H [Halorubrum terrestre JCM 10247]
Length = 198
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G L DG VV E +G ATNN AEY ALI L+ A + G+
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDG-VVAEGGERIGRATNNQAEYAALIRALEAADEYGFDA 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L Q++G W N+ L A+EL E+F + I H+ R +N AD AN
Sbjct: 132 VDVRGDSQLTVKQVRGEWNANDPELRERRVRARELLERFDRWSIAHVPREINERADDLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|363423455|ref|ZP_09311520.1| bifunctional RNase H/acid phosphatase [Rhodococcus pyridinivorans
AK37]
gi|359731704|gb|EHK80740.1| bifunctional RNase H/acid phosphatase [Rhodococcus pyridinivorans
AK37]
Length = 385
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREG-VGIATNNVAEYRALILGLKYAL 130
+ +E DG S+GNPG AG GAV+ D V R+ +G ATNNVAEY+ LI GL A
Sbjct: 3 TVVVEADGGSRGNPGPAGYGAVVFDADHRTVLAERQASIGRATNNVAEYKGLIAGLTAAA 62
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ G + V+ DSKLV Q+ G W++ + ++ L +A+EL +F+S I R N+
Sbjct: 63 ELGADEVHVRMDSKLVVEQMSGRWQVKHADMIPLAAQARELAGRFRSVDFTWIPRAENAH 122
Query: 191 AD 192
AD
Sbjct: 123 AD 124
>gi|94967119|ref|YP_589167.1| ribonuclease H [Candidatus Koribacter versatilis Ellin345]
gi|94549169|gb|ABF39093.1| ribonuclease H [Candidatus Koribacter versatilis Ellin345]
Length = 211
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 70/119 (58%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG ++GNPG AG G VL E G V L +G TNNVAEY L+ L YA + G+K +
Sbjct: 22 DGGARGNPGPAGFGVVLEDERGQKVDALSGFLGHQTNNVAEYSGLLAALDYAQKHGFKAL 81
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+V DS+L+ QI+G +K+ + NL L A+ + F+I H LR N EADA AN
Sbjct: 82 KVVADSELLVKQIRGEYKVKSPNLLDLYSRARVMIRTLDWFRIEHTLRGGNKEADALAN 140
>gi|15827864|ref|NP_302127.1| bifunctional RNase H/acid phosphatase [Mycobacterium leprae TN]
gi|221230341|ref|YP_002503757.1| bifunctional RNase H/acid phosphatase [Mycobacterium leprae Br4923]
gi|3150239|emb|CAA19219.1| hypothetical protein MLCB1243.38 [Mycobacterium leprae]
gi|13093416|emb|CAC30588.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933448|emb|CAR71732.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length = 371
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV+ D S V+ ++ +G ATNNVAEYRALI GL A++ G
Sbjct: 5 IEADGGSRGNPGPAGYGAVVWIADRSAVLTETKQAIGRATNNVAEYRALIAGLDDAVKMG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
V DSKLV Q+ G WK+ + +L L A+ L + S I R NS AD
Sbjct: 65 ATEAEVLMDSKLVVEQMSGRWKVKHPDLIELYVHAQTLASRLASVSYTWIPRTRNSRADR 124
Query: 194 QAN 196
AN
Sbjct: 125 LAN 127
>gi|183983294|ref|YP_001851585.1| bifunctional RNase H/acid phosphatase [Mycobacterium marinum M]
gi|443491565|ref|YP_007369712.1| Histidine phosphatase [Mycobacterium liflandii 128FXT]
gi|183176620|gb|ACC41730.1| conserved hypothetical protein [Mycobacterium marinum M]
gi|442584062|gb|AGC63205.1| Histidine phosphatase [Mycobacterium liflandii 128FXT]
Length = 374
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVY-RLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D S V ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VIIEADGGSRGNPGPAGYGAVVWTADRSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V DSKLV Q+ G WK+ + +L L +A+EL +F+ I R N+ A
Sbjct: 63 LGATEVSVLMDSKLVVEQMCGRWKVKHPDLVELHGQARELAGQFRRISYAWIPRARNAHA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|118617021|ref|YP_905353.1| bifunctional RNase H/acid phosphatase [Mycobacterium ulcerans
Agy99]
gi|118569131|gb|ABL03882.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length = 374
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVY-RLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D S V ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VIIEADGGSRGNPGPAGYGAVVWTADRSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V DSKLV Q+ G WK+ + +L L +A+EL +F+ I R N+ A
Sbjct: 63 LGATEVSVLMDSKLVVEQMCGRWKVKHPDLVELHGQARELAGQFRRISYAWIPRARNAHA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DQLAN 127
>gi|324998690|ref|ZP_08119802.1| bifunctional RNase H/acid phosphatase [Pseudonocardia sp. P1]
Length = 392
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ G+ V+ + +G+G ATNNVAEYR LI GL A +
Sbjct: 12 LVVEADGGSRGNPGPAGYGAVVLDAGGTQVLAEVYDGLGTATNNVAEYRGLIAGLTAARE 71
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + + DSKLV Q+ G WKI N L L A++ F + I R N+ A
Sbjct: 72 LGATEVDARLDSKLVVEQMSGRWKIKNTALQELADTARDQAAGFDAVTFTWIPRADNARA 131
Query: 192 DAQAN 196
DA AN
Sbjct: 132 DALAN 136
>gi|118466196|ref|YP_881419.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium 104]
gi|118167483|gb|ABK68380.1| phosphoglycerate mutase [Mycobacterium avium 104]
Length = 383
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D G+V+ ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTPDRGTVLAENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGATEAEVYLDSKLLVEQMSGRWKVKHPDLIELHAQARGLAARFDRISYSWIPRERNSHA 122
Query: 192 D 192
D
Sbjct: 123 D 123
>gi|254774920|ref|ZP_05216436.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 383
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D G+V+ ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTPDRGTVLAENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGATEAEVYLDSKLLVEQMSGRWKVKHPDLIELHAQARGLAARFDRISYSWIPRERNSHA 122
Query: 192 D 192
D
Sbjct: 123 D 123
>gi|296166119|ref|ZP_06848564.1| phosphoglycerate mutase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898528|gb|EFG78089.1| phosphoglycerate mutase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 364
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSV-VYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ AED S + ++ +G ATNNVAEYR L+ GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWAEDRSTALAETKQAIGHATNNVAEYRGLLAGLDDALR 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKL+ Q+ G WK+ + +L L +A++L +F I R+ NS A
Sbjct: 63 VGATEAAVFLDSKLLVEQMSGRWKVKHPDLVELHGQARKLAARFDRISYTWIPRDRNSYA 122
Query: 192 D 192
D
Sbjct: 123 D 123
>gi|383817660|ref|ZP_09972967.1| bifunctional RNase H/acid phosphatase [Mycobacterium phlei
RIVM601174]
gi|383340009|gb|EID18330.1| bifunctional RNase H/acid phosphatase [Mycobacterium phlei
RIVM601174]
Length = 358
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG ++GNPG AG GAV+ A+ V+ +E +G TNNVAEYR LI GL+ A +
Sbjct: 3 VIVEADGGARGNPGPAGYGAVVWDADHARVLGERKEAIGHTTNNVAEYRGLIAGLEEAAR 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V DSKLV Q+ G WK+ N ++A L ++A L +F I R NS A
Sbjct: 63 LGATEVEVLMDSKLVVEQMSGRWKVKNPDIAKLHQQASALVGRFDRVSFTWIPRADNSHA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|365874504|ref|ZP_09414037.1| ribonuclease HI [Thermanaerovibrio velox DSM 12556]
gi|363984591|gb|EHM10798.1| ribonuclease HI [Thermanaerovibrio velox DSM 12556]
Length = 145
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG AGAGA+L + GSV++ R +G TNN AEY+ALI L+ ++G +
Sbjct: 6 FDGASRGNPGVAGAGALLVDDGGSVIWEYRGFLGHRTNNEAEYQALIALLEEVRRRGIRS 65
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ-SFQINHILRNLNSEADAQA 195
+ V GDS+LV Q+ G WKIN +L L +EL + SF+ I R N +AD +
Sbjct: 66 VLVMGDSQLVISQVTGKWKINMPHLRALASRVRELCRGLEVSFK--WIPREENRQADRLS 123
Query: 196 NMGIYLKD 203
N I +D
Sbjct: 124 NEAIDRRD 131
>gi|118396396|ref|XP_001030538.1| RNase H family protein [Tetrahymena thermophila]
gi|89284845|gb|EAR82875.1| RNase H family protein [Tetrahymena thermophila SB210]
Length = 693
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGS--VVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+EFDG SKGNPG AG G +++ + + V+ VG TNN +EY ALI GL +L+
Sbjct: 561 IEFDGCSKGNPGLAGVGFLIKQHENNSQVLESFAVNVGTKTNNQSEYLALIYGLYVSLKI 620
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + +QGDS+L+ Q+ G + +N N+ + K L+ KFQ NH+ R N EAD
Sbjct: 621 GIQKLFIQGDSQLIIYQMTGKYNCSNDNIKKYYELCKMLQSKFQQTSFNHVYREQNKEAD 680
Query: 193 AQANMGI 199
+N+ I
Sbjct: 681 HLSNVAI 687
>gi|379707921|ref|YP_005263126.1| putative phosphoglycerate mutase [Nocardia cyriacigeorgica GUH-2]
gi|374845420|emb|CCF62486.1| Putative phosphoglycerate mutase [Nocardia cyriacigeorgica GUH-2]
Length = 451
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
+ +E DG S+GNPG AG GAV+ A ++ E +G+ATNNVAEYR LI GL+
Sbjct: 3 SVREVIVEADGGSRGNPGPAGYGAVVFDAGHSRILAERMEYLGVATNNVAEYRGLIAGLE 62
Query: 128 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
A + G + + V+ DSKLV Q+ G WK+ + + L AK L F I R
Sbjct: 63 AAAELGAREVSVRMDSKLVVEQMSGRWKVKHAAMIPLADRAKRLVAGFDRVSFQWIPRAE 122
Query: 188 NSEADAQANMGIYLKDGQVEAECSS 212
N+ AD AN + + DG + E +
Sbjct: 123 NAHADRLAN--VAMDDGGLVDEVRT 145
>gi|41408078|ref|NP_960914.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|417746648|ref|ZP_12395141.1| fructose-2,6-bisphosphatase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|440777596|ref|ZP_20956394.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
paratuberculosis S5]
gi|41396433|gb|AAS04297.1| hypothetical protein MAP_1980c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|336461839|gb|EGO40695.1| fructose-2,6-bisphosphatase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|436722174|gb|ELP46181.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 377
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D G+V+ ++ +G ATNNVAEYR L+ GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTPDRGTVLAENKQAIGRATNNVAEYRGLLAGLGDALK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKL+ Q+ G WK+ + +L L +A+ L +F I R NS A
Sbjct: 63 LGATEAEVYLDSKLLVEQMSGRWKVKHPDLIELHAQARSLAARFDRISYTWIPRERNSHA 122
Query: 192 D 192
D
Sbjct: 123 D 123
>gi|310659055|ref|YP_003936776.1| ATP-utilizing enzyme of the PP-loop superfamily (modular protein)
[[Clostridium] sticklandii]
gi|308825833|emb|CBH21871.1| ATP-utilizing enzyme of the PP-loop superfamily (modular protein)
[[Clostridium] sticklandii]
Length = 428
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG S+GNPG+A G V+ D +VY +GIATNN+AEY AL+ G++ ++ G + +
Sbjct: 7 DGGSRGNPGEAAIGFVIYDGD-KIVYEKARPIGIATNNIAEYTALLEGVEALIRLGVQDV 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
DS+LV QI+G +K+ NQ L + K+ F+SF INH+ R N EAD N+
Sbjct: 66 EAFLDSELVVKQIKGEYKVKNQELKVIFDRIKDKINNFKSFSINHVKRAYNKEADRILNI 125
Query: 198 GI 199
+
Sbjct: 126 AL 127
>gi|448604363|ref|ZP_21657615.1| ribonuclease H [Haloferax sulfurifontis ATCC BAA-897]
gi|445744523|gb|ELZ95999.1| ribonuclease H [Haloferax sulfurifontis ATCC BAA-897]
Length = 197
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G + DG +V + +G TNN AEY AL+ L A + GY
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSDG-IVAEGSQRIGETTNNRAEYEALVEALSVAEEYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G W N+ L +A+EL F + + H+ R +N AD+ AN
Sbjct: 132 VDVRGDSQLIVKQVRGEWNTNDPGLKERRVKARELLSTFDRWSLEHVPREINDRADSLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|448624091|ref|ZP_21670164.1| ribonuclease H [Haloferax denitrificans ATCC 35960]
gi|445750058|gb|EMA01497.1| ribonuclease H [Haloferax denitrificans ATCC 35960]
Length = 197
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G + DG +V + +G TNN AEY AL+ L A + GY
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSDG-IVAEGSQRIGETTNNRAEYEALVEALSVAEEYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G W N+ L +A+EL F + + H+ R +N AD+ AN
Sbjct: 132 VDVRGDSQLIVKQVRGEWNTNDPGLKERRVKARELLSAFDRWSLEHVPREINDRADSLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|292654895|ref|YP_003534792.1| ribonuclease H-like protein [Haloferax volcanii DS2]
gi|448292887|ref|ZP_21483208.1| ribonuclease H [Haloferax volcanii DS2]
gi|291370792|gb|ADE03019.1| ribonuclease H-like protein [Haloferax volcanii DS2]
gi|445571862|gb|ELY26405.1| ribonuclease H [Haloferax volcanii DS2]
Length = 197
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G + DG +V + +G TNN AEY AL+ L A + GY
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSDG-IVAEGSKRIGETTNNRAEYEALVEALSVAEEYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G W N+ L +A+EL F+ + + H+ R +N AD+ AN
Sbjct: 132 VDVRGDSQLIVKQVRGEWNTNDPGLKERRVKARELLSAFERWSLEHVPREINDRADSLAN 191
>gi|388494996|gb|AFK35564.1| unknown [Lotus japonicus]
Length = 70
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 49/63 (77%)
Query: 145 LVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDG 204
LVC Q+QGLWKI NQN+A LC EAKELK KF SF+INHI R NSEAD QAN GI + G
Sbjct: 2 LVCNQVQGLWKIENQNIASLCSEAKELKNKFLSFKINHIPREYNSEADVQANFGISFRAG 61
Query: 205 QVE 207
QVE
Sbjct: 62 QVE 64
>gi|448661394|ref|ZP_21683631.1| ribonuclease H [Haloarcula californiae ATCC 33799]
gi|445758470|gb|EMA09780.1| ribonuclease H [Haloarcula californiae ATCC 33799]
Length = 173
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ FDG ++ NPG A G + E+ Y +G ATNN AEYRALI L+ A G
Sbjct: 41 TIHFDGGARPNPGPAAIGCTVETEECYSEYS--NTIGEATNNQAEYRALIRALEIAEDAG 98
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ + +GDS+L+ QI G W N+ L L + +EL + F F + H+ R N AD+
Sbjct: 99 FDSVTAKGDSQLIVNQITGKWDTNDDTLKDLRDDVRELAQIFDRFNVEHVPREENETADS 158
Query: 194 QA 195
Q+
Sbjct: 159 QS 160
>gi|428216220|ref|YP_007089364.1| ribonuclease HI [Oscillatoria acuminata PCC 6304]
gi|428004601|gb|AFY85444.1| ribonuclease HI [Oscillatoria acuminata PCC 6304]
Length = 135
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 81/128 (63%), Gaps = 1/128 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ DGAS+ NPG AGAGAVL E G+++ ++ + +G TNN AEY+A ILGL+ AL+
Sbjct: 3 ITIYSDGASRRNPGPAGAGAVLLDEQGNILNKVCKYLGETTNNQAEYQAAILGLETALKM 62
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSF-QINHILRNLNSEA 191
G ++++ DS+L+ Q+ G +++ L L + K L +F+S+ H+ R N+ A
Sbjct: 63 GATRVKLRADSELMVKQLLGQYRVKKPELKPLYDQVKSLFNQFESYAPPEHVRRADNALA 122
Query: 192 DAQANMGI 199
DA+AN I
Sbjct: 123 DAEANRAI 130
>gi|150390743|ref|YP_001320792.1| ribonuclease H [Alkaliphilus metalliredigens QYMF]
gi|149950605|gb|ABR49133.1| ribonuclease H [Alkaliphilus metalliredigens QYMF]
Length = 135
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 74/122 (60%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG S+GNPG+AG G ++ ++G+ V + + +G TNNV+EY+AL L+ AL G K +
Sbjct: 11 DGGSRGNPGEAGIGITIQDQEGNEVRAISQYIGDQTNNVSEYKALSRALEIALDMGIKRV 70
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
DS+LV Q++G +K+ N+ + + L +KF+SF I H+ R N AD AN+
Sbjct: 71 TCYLDSELVVKQVKGQYKVKNERMIPMYNMVMPLVKKFESFAIEHVRREQNKRADELANI 130
Query: 198 GI 199
+
Sbjct: 131 AM 132
>gi|296119751|ref|ZP_06838305.1| phosphoglycerate mutase family protein [Corynebacterium
ammoniagenes DSM 20306]
gi|295966905|gb|EFG80176.1| phosphoglycerate mutase family protein [Corynebacterium
ammoniagenes DSM 20306]
Length = 392
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 6/123 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI----ATNNVAEYRALILGLKYALQKG 133
DG S+GNPG AG+G V+ A DGS + L E V + +TNNVAEY L+ G++ A + G
Sbjct: 11 DGGSRGNPGVAGSGTVIYAADGSTI--LDEIVYVVGKKSTNNVAEYHGLLRGVERAAELG 68
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ DSKLV QI G WKI + ++ L EAK++ KF+SF ++ + R NS AD
Sbjct: 69 ATEVEFYMDSKLVVEQINGRWKIKHPDMQRLAVEAKKIINKFESFSLDWVARGKNSVADK 128
Query: 194 QAN 196
+N
Sbjct: 129 LSN 131
>gi|238060393|ref|ZP_04605102.1| phosphoglycerate mutase [Micromonospora sp. ATCC 39149]
gi|237882204|gb|EEP71032.1| phosphoglycerate mutase [Micromonospora sp. ATCC 39149]
Length = 410
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAE-DGSVVYRLREGVGIATNNVAEYRALILGLKYAL 130
+ +E DG S+GNPG AG GAV+R + G V+ E +G ATNNVAEYR LI GL+ A
Sbjct: 5 TVVVEADGGSRGNPGPAGYGAVVRDQASGEVLAERSEAIGTATNNVAEYRGLIAGLEAAA 64
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
+ G + + DSKLV Q+ G W+I + L L +A L ++F + + I R N
Sbjct: 65 ELGAVEVDARMDSKLVVEQMCGRWQIKHPGLRPLAAQAAALVDRFAAVRFQWIPRERN 122
>gi|433439806|ref|ZP_20408470.1| ribonuclease H [Haloferax sp. BAB2207]
gi|448572792|ref|ZP_21640553.1| ribonuclease H [Haloferax lucentense DSM 14919]
gi|448597014|ref|ZP_21654152.1| ribonuclease H [Haloferax alexandrinus JCM 10717]
gi|432188378|gb|ELK45576.1| ribonuclease H [Haloferax sp. BAB2207]
gi|445719564|gb|ELZ71243.1| ribonuclease H [Haloferax lucentense DSM 14919]
gi|445740895|gb|ELZ92400.1| ribonuclease H [Haloferax alexandrinus JCM 10717]
Length = 197
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G + DG +V + +G TNN AEY AL+ L A + GY
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSDG-IVAEGSKRIGETTNNRAEYEALVEALSVAEEYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G W N+ L +A+EL F + + H+ R +N AD+ AN
Sbjct: 132 VDVRGDSQLIVKQVRGEWNTNDPGLKERRVKARELLSAFDRWSLEHVPREINDRADSLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|448543301|ref|ZP_21624870.1| ribonuclease H [Haloferax sp. ATCC BAA-646]
gi|448550187|ref|ZP_21628710.1| ribonuclease H [Haloferax sp. ATCC BAA-645]
gi|448559541|ref|ZP_21633615.1| ribonuclease H [Haloferax sp. ATCC BAA-644]
gi|445706845|gb|ELZ58718.1| ribonuclease H [Haloferax sp. ATCC BAA-646]
gi|445710931|gb|ELZ62726.1| ribonuclease H [Haloferax sp. ATCC BAA-644]
gi|445711962|gb|ELZ63748.1| ribonuclease H [Haloferax sp. ATCC BAA-645]
Length = 197
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G + DG +V + +G TNN AEY AL+ L A + GY
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSDG-IVAEGSKRIGETTNNRAEYEALVEALSVAEEYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G W N+ L +A+EL F + + H+ R +N AD+ AN
Sbjct: 132 VDVRGDSQLIVKQVRGDWNTNDPGLKERRVKARELLSAFDRWSLEHVPREINDRADSLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|183222197|ref|YP_001840193.1| putative ribonuclease H [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189912251|ref|YP_001963806.1| ribonuclease HI [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167776927|gb|ABZ95228.1| Ribonuclease HI [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167780619|gb|ABZ98917.1| Putative ribonuclease H [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 137
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 74/121 (61%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG+S+GNPG A G + +G + L E +G ATNNVAE+ AL G++ A+++ K I
Sbjct: 12 DGSSRGNPGPAAIGVSFQNNEGMEFHFLSEKIGNATNNVAEWNALSRGMEEAIRQSIKKI 71
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ + DS+LV Q++G +K+ N++L + +LK F+SF I +I R N+ AD AN
Sbjct: 72 KFRLDSELVVKQMKGEYKVKNKDLMVFKTKCDQLKNSFESFDIQYIPREQNARADQLANF 131
Query: 198 G 198
Sbjct: 132 A 132
>gi|448317589|ref|ZP_21507139.1| ribonuclease H [Natronococcus jeotgali DSM 18795]
gi|445602980|gb|ELY56950.1| ribonuclease H [Natronococcus jeotgali DSM 18795]
Length = 197
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G V+ DG +V E +G TNN AEY ALI L+ A + GY
Sbjct: 73 FDGASRGNPGPAAIGWVIVTGDG-IVAEGSERIGRTTNNRAEYEALITALEAAAEYGYGE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + NN L A+EL +F + + ++ R +N AD AN
Sbjct: 132 VHVRGDSELIVKQVRGEYDTNNPELRERRVAARELLSRFDEWTLEYVPREVNDRADGLAN 191
>gi|383823283|ref|ZP_09978488.1| bifunctional RNase H/acid phosphatase [Mycobacterium xenopi
RIVM700367]
gi|383339608|gb|EID17943.1| bifunctional RNase H/acid phosphatase [Mycobacterium xenopi
RIVM700367]
Length = 369
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG G V+ A+ +V+ ++ +G ATNNVAEYR LI GL A +
Sbjct: 3 VIVEADGGSRGNPGPAGYGTVVWNADHSTVLAESKQAIGRATNNVAEYRGLIAGLDEAAK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V DSKLV Q+ G W++ + ++A L K A+ L KF + R NS A
Sbjct: 63 VGATDVTVLMDSKLVVEQMSGRWQVKHPDIAELYKRAQALASKFDRISYAWVPRERNSHA 122
Query: 192 D 192
D
Sbjct: 123 D 123
>gi|374607259|ref|ZP_09680060.1| Phosphoglycerate mutase [Mycobacterium tusciae JS617]
gi|373555095|gb|EHP81665.1| Phosphoglycerate mutase [Mycobacterium tusciae JS617]
Length = 361
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 4/144 (2%)
Query: 73 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ A+ +V+ ++ +G ATNNVAEY LI GL+ A +
Sbjct: 3 VIVEADGGSRGNPGPAGYGAVVWTADRNTVLAERKQAIGRATNNVAEYSGLIAGLEEAAK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V DSKLV Q+ G WK+ + ++ L +EA L +F + R N A
Sbjct: 63 LGASEVDVNMDSKLVVEQMSGRWKVKHPDMVPLHQEATALSTRFDHVAYTWVPRAKNGHA 122
Query: 192 DAQANMGIYLKDGQVEAECSSFTK 215
D AN + D E E + K
Sbjct: 123 DRLANEAM---DAAAELETPAEAK 143
>gi|271968069|ref|YP_003342265.1| fructose-2 6-bisphosphatase-like protein [Streptosporangium roseum
DSM 43021]
gi|270511244|gb|ACZ89522.1| Fructose-2 6-bisphosphatase-like protein [Streptosporangium roseum
DSM 43021]
Length = 452
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLK--Y 128
S +E DG S+GNPG AG GAV++ A DG V+ E +G TNNVAEYR LI GL+
Sbjct: 3 SFVIEADGGSRGNPGPAGYGAVVKDAADGQVLVETAEAIGAQTNNVAEYRGLIAGLQSLL 62
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
AL + V+ DSKLV Q+ G WKI N+ L L EA L + + I R N
Sbjct: 63 ALAGDGAVVEVRMDSKLVIEQMAGRWKIKNEGLRPLALEAGALARRLR-VTWQWIPREKN 121
Query: 189 SEADAQAN 196
+AD AN
Sbjct: 122 KDADRLAN 129
>gi|433631347|ref|YP_007264975.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070010]
gi|433635296|ref|YP_007268923.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070017]
gi|432162940|emb|CCK60332.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070010]
gi|432166889|emb|CCK64392.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070017]
Length = 364
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVY-RLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D S V ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R NS A
Sbjct: 63 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNSYA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|410479732|ref|YP_006767369.1| ribonuclease H [Leptospirillum ferriphilum ML-04]
gi|124515191|gb|EAY56702.1| putative ribonuclease H [Leptospirillum rubarum]
gi|406774984|gb|AFS54409.1| putative ribonuclease H [Leptospirillum ferriphilum ML-04]
Length = 134
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 72/119 (60%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG + G +L+ EDG V++ + TNN AEY+ALI GL+ A +G +++
Sbjct: 6 DGASRGNPGPSSIGYLLKDEDGRVIFSEGRILPPGTNNQAEYQALIAGLQAARDRGVRNL 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
V+ DS+L+ Q+ G +++ N L ++A L F + Q HI R N++AD AN
Sbjct: 66 LVRADSELMIRQMTGKYRVRNPGLLACYEQATNLSRSFDTIQFEHIPREQNAQADRLAN 124
>gi|409730081|ref|ZP_11271676.1| ribonuclease H [Halococcus hamelinensis 100A6]
gi|448723224|ref|ZP_21705748.1| ribonuclease H [Halococcus hamelinensis 100A6]
gi|445787966|gb|EMA38692.1| ribonuclease H [Halococcus hamelinensis 100A6]
Length = 196
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 6/128 (4%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKY 128
+CY FDGAS+GNPG A G V+ + +V E +G TNN AEY AL+ L+
Sbjct: 70 HCY-----FDGASRGNPGPAAVGWVI-VDSSGIVTEGSERIGETTNNRAEYEALLRVLEL 123
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A + G+ + ++GDS+LV Q++G W N+ L A+EL + F + I H+ R +N
Sbjct: 124 AREYGFSTVDIRGDSQLVVEQVRGAWDTNDPGLRERRVRARELLDGFDEWSIEHVPREVN 183
Query: 189 SEADAQAN 196
AD AN
Sbjct: 184 ERADRLAN 191
>gi|312879052|ref|ZP_07738852.1| ribonuclease H [Aminomonas paucivorans DSM 12260]
gi|310782343|gb|EFQ22741.1| ribonuclease H [Aminomonas paucivorans DSM 12260]
Length = 133
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG+A AGA L +DG V++ + +G+ TNN AEY AL+ L+ A ++G
Sbjct: 6 FDGASRGNPGEACAGAFLEDQDGKVLWECSQYLGVRTNNEAEYEALLRLLEEARRRGVAE 65
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V GDS+LV Q+ WKIN +L L A EL E + + + R N+ ADA +N
Sbjct: 66 LEVCGDSRLVVCQVNRQWKINLPHLRELASRAWELMEGMK-VTLRWVPREQNARADALSN 124
Query: 197 MGI 199
+
Sbjct: 125 RAL 127
>gi|345014665|ref|YP_004817019.1| phosphoglycerate mutase [Streptomyces violaceusniger Tu 4113]
gi|344041014|gb|AEM86739.1| Phosphoglycerate mutase [Streptomyces violaceusniger Tu 4113]
Length = 391
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 72/125 (57%), Gaps = 5/125 (4%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLK--YALQ 131
+E DG S+GNPG AG GAV L AE G + + E +G ATNNVAEY+ LI GL+ YAL
Sbjct: 7 VEADGGSRGNPGPAGYGAVVLDAETGEPLAEVAEYIGTATNNVAEYKGLIAGLRAAYALD 66
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+RV+ DSKLV Q+ G WKI + ++ L EAK + Q I R N A
Sbjct: 67 P-EAEVRVRMDSKLVIEQMSGRWKIKHPDMRPLAAEAKAIMPPGQ-LAYEWIPREKNKHA 124
Query: 192 DAQAN 196
D AN
Sbjct: 125 DRLAN 129
>gi|29832420|ref|NP_827054.1| bifunctional RNase H/acid phosphatase [Streptomyces avermitilis
MA-4680]
gi|29609539|dbj|BAC73589.1| putative bifunctional protein [Streptomyces avermitilis MA-4680]
Length = 438
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 74/127 (58%), Gaps = 9/127 (7%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLK--YALQ 131
+E DG S+GNPG AG GAV + A G + E +G+ATNNVAEYR L+ GLK AL
Sbjct: 7 VEADGGSRGNPGPAGYGAVVIDAATGETLAETAEYIGVATNNVAEYRGLLAGLKAARALD 66
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNS 189
+ IRV+ DSKLV Q+ G WKI + ++ L +EA + F Q+ + I R N
Sbjct: 67 PAAR-IRVRMDSKLVVEQMSGRWKIKHPDMKPLAREAAAV---FPPSQVTYEWIPRERNK 122
Query: 190 EADAQAN 196
AD AN
Sbjct: 123 HADRLAN 129
>gi|395225347|ref|ZP_10403873.1| ribonuclease HI [Thiovulum sp. ES]
gi|394446521|gb|EJF07343.1| ribonuclease HI [Thiovulum sp. ES]
Length = 157
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 77 FDGASKGNPGQAGAG-AVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 135
FDGAS GNPG+ G G A+L + D V+Y+ E +G TNN AEY ALIL L+ AL+ G +
Sbjct: 38 FDGASSGNPGKIGVGFAILNSSD-EVIYQRGEVIGTGTNNEAEYFALILLLETALKNGVE 96
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ + GDSKLV Q+ G WK+ +NL + AK+ +K +F I+ I R+ N+ AD+
Sbjct: 97 KMEIFGDSKLVVEQVSGRWKVKAENLKPFSEIAKDRFKK-GNFSISWIRRDKNTLADS 153
>gi|448582205|ref|ZP_21645709.1| ribonuclease H [Haloferax gibbonsii ATCC 33959]
gi|445731853|gb|ELZ83436.1| ribonuclease H [Haloferax gibbonsii ATCC 33959]
Length = 197
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G + +G +V + +G TNN AEY AL+ L A + GY
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSNG-IVAEGSKRIGETTNNRAEYEALVEALSVAEEYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I V+GDS+LV Q++G W N+ L +A+EL F + + H+ R +N AD+ AN
Sbjct: 132 IDVRGDSQLVVKQVRGEWNTNDPGLKERRVKARELLSAFDRWSLEHVPREINDRADSLAN 191
>gi|383788536|ref|YP_005473105.1| putative ribonuclease [Caldisericum exile AZM16c01]
gi|381364173|dbj|BAL81002.1| putative ribonuclease [Caldisericum exile AZM16c01]
Length = 132
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG++ +V D ++Y + E +GIATNNVAEY+A++ ++ A ++ +K +
Sbjct: 7 DGASRGNPGESAISSVF-VLDAKIIYVMSESIGIATNNVAEYKAILKSMEEARRRNFKSV 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
DS LV Q+ G++K+ +++L L +E K L+++F+S H+ R
Sbjct: 66 SFFSDSLLVVSQLNGIYKVKSKDLFTLYEEVKNLEKEFESVSFVHVAR 113
>gi|392943834|ref|ZP_10309476.1| fructose-2,6-bisphosphatase [Frankia sp. QA3]
gi|392287128|gb|EIV93152.1| fructose-2,6-bisphosphatase [Frankia sp. QA3]
Length = 378
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R A DG+V+ +G ATNNVAEY LI GL+ A +
Sbjct: 7 LVVEADGGSRGNPGPAGYGAVVRDAADGTVLAERAASIGHATNNVAEYSGLIAGLRAAAE 66
Query: 132 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ V+ DSKLV Q+ G WKI + + L EA L F + + + R N++
Sbjct: 67 IAPDAEVEVRMDSKLVVEQMSGRWKIKHPAMRPLADEAAGLARGFPAVRYQWVPRARNAD 126
Query: 191 AD 192
AD
Sbjct: 127 AD 128
>gi|407277357|ref|ZP_11105827.1| bifunctional RNase H/acid phosphatase [Rhodococcus sp. P14]
Length = 364
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREG-VGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D V R +G ATNNVAEY+ LI GL A +
Sbjct: 4 VVVEADGGSRGNPGPAGYGAVVFDADREAVLAERSASIGRATNNVAEYQGLIAGLTAAAE 63
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WKI + ++ L A+EL F + + R N+ A
Sbjct: 64 LGADEVDVRMDSKLVVEQMSGRWKIKHPDMIPLAARARELAGGFSRVEFTWVPRAENAYA 123
Query: 192 DAQAN 196
D AN
Sbjct: 124 DRLAN 128
>gi|15609365|ref|NP_216744.1| Multifunctional protein. Has RNASE H,alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium
tuberculosis H37Rv]
gi|15841722|ref|NP_336759.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CDC1551]
gi|31793409|ref|NP_855902.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis
AF2122/97]
gi|121638111|ref|YP_978335.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148662048|ref|YP_001283571.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
H37Ra]
gi|148823436|ref|YP_001288190.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
F11]
gi|167969373|ref|ZP_02551650.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
H37Ra]
gi|224990605|ref|YP_002645292.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|253798706|ref|YP_003031707.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN 1435]
gi|254232381|ref|ZP_04925708.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254365024|ref|ZP_04981070.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551269|ref|ZP_05141716.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289443737|ref|ZP_06433481.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289447858|ref|ZP_06437602.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CPHL_A]
gi|289570348|ref|ZP_06450575.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289574915|ref|ZP_06455142.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
K85]
gi|289745502|ref|ZP_06504880.1| phosphoglycerate mutase [Mycobacterium tuberculosis 02_1987]
gi|289750825|ref|ZP_06510203.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289754337|ref|ZP_06513715.1| phosphoglycerate mutase [Mycobacterium tuberculosis EAS054]
gi|294993616|ref|ZP_06799307.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
210]
gi|297634820|ref|ZP_06952600.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN 4207]
gi|297731811|ref|ZP_06960929.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN R506]
gi|298525721|ref|ZP_07013130.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306776483|ref|ZP_07414820.1| hypothetical protein TMAG_00419 [Mycobacterium tuberculosis
SUMu001]
gi|306789374|ref|ZP_07427696.1| hypothetical protein TMDG_00708 [Mycobacterium tuberculosis
SUMu004]
gi|306793697|ref|ZP_07431999.1| hypothetical protein TMEG_02598 [Mycobacterium tuberculosis
SUMu005]
gi|306798089|ref|ZP_07436391.1| hypothetical protein TMFG_01192 [Mycobacterium tuberculosis
SUMu006]
gi|306808541|ref|ZP_07445209.1| hypothetical protein TMGG_00788 [Mycobacterium tuberculosis
SUMu007]
gi|306972595|ref|ZP_07485256.1| hypothetical protein TMJG_00492 [Mycobacterium tuberculosis
SUMu010]
gi|307084891|ref|ZP_07494004.1| hypothetical protein TMLG_02717 [Mycobacterium tuberculosis
SUMu012]
gi|313659145|ref|ZP_07816025.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN V2475]
gi|339632255|ref|YP_004723897.1| hypothetical protein MAF_22400 [Mycobacterium africanum GM041182]
gi|340627233|ref|YP_004745685.1| hypothetical protein MCAN_22511 [Mycobacterium canettii CIPT
140010059]
gi|375295964|ref|YP_005100231.1| hypothetical protein TBSG_01763 [Mycobacterium tuberculosis KZN
4207]
gi|378771961|ref|YP_005171694.1| hypothetical protein BCGMEX_2234c [Mycobacterium bovis BCG str.
Mexico]
gi|383308027|ref|YP_005360838.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
RGTB327]
gi|385995190|ref|YP_005913488.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CCDC5079]
gi|385999004|ref|YP_005917303.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CTRI-2]
gi|392386871|ref|YP_005308500.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|392432175|ref|YP_006473219.1| hypothetical protein TBXG_001734 [Mycobacterium tuberculosis KZN
605]
gi|397674114|ref|YP_006515649.1| hypothetical protein RVBD_2228c [Mycobacterium tuberculosis H37Rv]
gi|422813262|ref|ZP_16861637.1| hypothetical protein TMMG_01511 [Mycobacterium tuberculosis
CDC1551A]
gi|424804566|ref|ZP_18229997.1| hypothetical protein TBPG_01727 [Mycobacterium tuberculosis W-148]
gi|424947911|ref|ZP_18363607.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
NCGM2209]
gi|433627347|ref|YP_007260976.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140060008]
gi|433642416|ref|YP_007288175.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070008]
gi|449064287|ref|YP_007431370.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis BCG str.
Korea 1168P]
gi|54040461|sp|P64956.1|Y2253_MYCBO RecName: Full=Uncharacterized protein Mb2253c
gi|54042871|sp|P64955.1|Y2228_MYCTU RecName: Full=Uncharacterized protein Rv2228c/MT2287
gi|13881979|gb|AAK46573.1| phosphoglycerate mutase family protein [Mycobacterium tuberculosis
CDC1551]
gi|31619001|emb|CAD97106.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493759|emb|CAL72234.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124601440|gb|EAY60450.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134150538|gb|EBA42583.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148506200|gb|ABQ74009.1| hypothetical protein MRA_2247 [Mycobacterium tuberculosis H37Ra]
gi|148721963|gb|ABR06588.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224773718|dbj|BAH26524.1| hypothetical protein JTY_2240 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253320209|gb|ACT24812.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289416656|gb|EFD13896.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289420816|gb|EFD18017.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CPHL_A]
gi|289539346|gb|EFD43924.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
K85]
gi|289544102|gb|EFD47750.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289686030|gb|EFD53518.1| phosphoglycerate mutase [Mycobacterium tuberculosis 02_1987]
gi|289691412|gb|EFD58841.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289694924|gb|EFD62353.1| phosphoglycerate mutase [Mycobacterium tuberculosis EAS054]
gi|298495515|gb|EFI30809.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308215119|gb|EFO74518.1| hypothetical protein TMAG_00419 [Mycobacterium tuberculosis
SUMu001]
gi|308334063|gb|EFP22914.1| hypothetical protein TMDG_00708 [Mycobacterium tuberculosis
SUMu004]
gi|308337869|gb|EFP26720.1| hypothetical protein TMEG_02598 [Mycobacterium tuberculosis
SUMu005]
gi|308341630|gb|EFP30481.1| hypothetical protein TMFG_01192 [Mycobacterium tuberculosis
SUMu006]
gi|308345037|gb|EFP33888.1| hypothetical protein TMGG_00788 [Mycobacterium tuberculosis
SUMu007]
gi|308357998|gb|EFP46849.1| hypothetical protein TMJG_00492 [Mycobacterium tuberculosis
SUMu010]
gi|308365550|gb|EFP54401.1| hypothetical protein TMLG_02717 [Mycobacterium tuberculosis
SUMu012]
gi|323719131|gb|EGB28276.1| hypothetical protein TMMG_01511 [Mycobacterium tuberculosis
CDC1551A]
gi|326903842|gb|EGE50775.1| hypothetical protein TBPG_01727 [Mycobacterium tuberculosis W-148]
gi|328458469|gb|AEB03892.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
gi|339295144|gb|AEJ47255.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CCDC5079]
gi|339331611|emb|CCC27310.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
gi|340005423|emb|CCC44583.1| conserved hypothetical protein [Mycobacterium canettii CIPT
140010059]
gi|341602149|emb|CCC64823.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau
RDJ]
gi|344220051|gb|AEN00682.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CTRI-2]
gi|356594282|gb|AET19511.1| Hypothetical protein BCGMEX_2234c [Mycobacterium bovis BCG str.
Mexico]
gi|358232426|dbj|GAA45918.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
NCGM2209]
gi|378545422|emb|CCE37699.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|379028508|dbj|BAL66241.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
str. Erdman = ATCC 35801]
gi|380721980|gb|AFE17089.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
RGTB327]
gi|392053584|gb|AFM49142.1| hypothetical protein TBXG_001734 [Mycobacterium tuberculosis KZN
605]
gi|395139019|gb|AFN50178.1| hypothetical protein RVBD_2228c [Mycobacterium tuberculosis H37Rv]
gi|432154953|emb|CCK52195.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140060008]
gi|432158964|emb|CCK56266.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070008]
gi|440581704|emb|CCG12107.1| hypothetical protein MT7199_2259 [Mycobacterium tuberculosis
7199-99]
gi|444895746|emb|CCP45006.1| Multifunctional protein. Has RNASE H,alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium
tuberculosis H37Rv]
gi|449032795|gb|AGE68222.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis BCG str.
Korea 1168P]
Length = 364
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVY-RLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D S V ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ A
Sbjct: 63 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|289758350|ref|ZP_06517728.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
T85]
gi|289713914|gb|EFD77926.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
T85]
Length = 340
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVY-RLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D S V ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ A
Sbjct: 63 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|284045112|ref|YP_003395452.1| ribonuclease H [Conexibacter woesei DSM 14684]
gi|283949333|gb|ADB52077.1| ribonuclease H [Conexibacter woesei DSM 14684]
Length = 133
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 73/127 (57%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+ DG ++GNPG A G V+ +G VV R E +G ATNNVAEYRAL+LGL+ A
Sbjct: 3 LVVHVDGGARGNPGPAAVGVVVSTPEGEVVERRAETIGEATNNVAEYRALLLGLERARAL 62
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + V DS+LV Q+ G +++ + + L A E F+++++ + R N++AD
Sbjct: 63 GATEVEVVNDSELVAKQVGGEYRVKHAAMRPLHAAALEALGGFEAWRVRSVPRAQNADAD 122
Query: 193 AQANMGI 199
A N +
Sbjct: 123 ALVNAAL 129
>gi|448411566|ref|ZP_21575967.1| ribonuclease H [Halosimplex carlsbadense 2-9-1]
gi|445670138|gb|ELZ22742.1| ribonuclease H [Halosimplex carlsbadense 2-9-1]
Length = 197
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGA +GNPG + G V+ DG +V +G ATNN AEY ALI G+ A G
Sbjct: 73 FDGACRGNPGPSAVGWVIVGGDG-IVAEGGHTIGRATNNQAEYEALIEGVSVARDYGLDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I V+GDS+L+ Q++G W N+ +L +EL F+S+ + H+ R +N AD AN
Sbjct: 132 IDVRGDSELIVKQVRGEWDTNDPDLREYRVTVRELLTDFESWSLEHVPREINDRADDLAN 191
>gi|295321673|pdb|3HST|B Chain B, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
gi|295321675|pdb|3HST|D Chain D, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
Length = 141
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D S V+ ++ +G ATNNVAEYR LI GL A++
Sbjct: 4 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 63
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ A
Sbjct: 64 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 123
Query: 192 DAQAN 196
D AN
Sbjct: 124 DRLAN 128
>gi|448456849|ref|ZP_21595505.1| ribonuclease H [Halorubrum lipolyticum DSM 21995]
gi|445811446|gb|EMA61453.1| ribonuclease H [Halorubrum lipolyticum DSM 21995]
Length = 198
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG AG G L DG +V E +G ATNN AEY ALI L+ A + G+
Sbjct: 73 FDGASRGNPGPAGVGWCLVTSDG-IVAEGGERIGRATNNQAEYAALIRALEAADEYGFDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I V+GDS+L+ Q++G W N+ L +EL +F + I H+ R +N AD AN
Sbjct: 132 IDVRGDSQLIVKQVRGEWNANDPELRERRVRVRELLARFDRWSIGHVPREINERADDLAN 191
>gi|300712184|ref|YP_003737998.1| ribonuclease H [Halalkalicoccus jeotgali B3]
gi|448295873|ref|ZP_21485936.1| ribonuclease H [Halalkalicoccus jeotgali B3]
gi|299125867|gb|ADJ16206.1| ribonuclease H [Halalkalicoccus jeotgali B3]
gi|445583302|gb|ELY37634.1| ribonuclease H [Halalkalicoccus jeotgali B3]
Length = 197
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L FDG S+GNPG A G VL + DG +V E +G TNN AEY AL GL+ A + G+
Sbjct: 71 LYFDGGSRGNPGPAAIGWVLVSSDG-IVAEGNERIGETTNNRAEYEALARGLEVAREYGF 129
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ V+GDS+LV Q++G W N+ + EL F + I H+ R +N AD
Sbjct: 130 DAVEVRGDSQLVVKQVRGEWDANDPGMRERRVRVHELLSAFPEWSIAHVPREINERADEL 189
Query: 195 AN 196
N
Sbjct: 190 VN 191
>gi|86740144|ref|YP_480544.1| bifunctional RNase H/acid phosphatase [Frankia sp. CcI3]
gi|86567006|gb|ABD10815.1| Phosphoglycerate mutase [Frankia sp. CcI3]
Length = 378
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R A G ++ + +G ATNNVAEY LI GL+ A +
Sbjct: 7 LVIEADGGSRGNPGPAGYGAVVRDAGSGKLLAERADSIGRATNNVAEYSGLIAGLRAAAE 66
Query: 132 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ V+ DSKLV Q+ G WK+ + + L EA EL +F + + + R N++
Sbjct: 67 IAPDAELEVRMDSKLVVEQMSGRWKVKHPAMRPLVAEATELAARFPAVRFQWVPRARNAD 126
Query: 191 AD 192
AD
Sbjct: 127 AD 128
>gi|435848098|ref|YP_007310348.1| ribonuclease HI [Natronococcus occultus SP4]
gi|433674366|gb|AGB38558.1| ribonuclease HI [Natronococcus occultus SP4]
Length = 197
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G V+ DG +V + +G ATNN AEY ALI L+ A + Y
Sbjct: 73 FDGASRGNPGPAAIGWVIVTGDG-IVAEGNDRIGTATNNQAEYAALITALEAAAEYDYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + NN L A+EL +F + + ++ R +N AD AN
Sbjct: 132 LHVRGDSELIVKQVRGEYDTNNPELRERRVTARELLSRFDEWSLEYVPREVNDRADGLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|385807968|ref|YP_005844365.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 267]
gi|383805361|gb|AFH52440.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 267]
Length = 386
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG+G VL A ++ RL VG ATNNVAEY AL+ GL A + G
Sbjct: 5 IEADGGSRGNPGVAGSGTVLFDATHTEILRRLAYVVGTATNNVAEYHALLNGLTAARELG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G WKI + ++ L + + F S I RN N+ AD
Sbjct: 65 ATEVDVLMDSKLVVEQMSGRWKIKHPDMKQLALSCQHIASGFASITYTWIPRNQNARADE 124
Query: 194 QANMGI 199
AN +
Sbjct: 125 LANKAM 130
>gi|118467729|ref|YP_888582.1| bifunctional RNase H/acid phosphatase [Mycobacterium smegmatis str.
MC2 155]
gi|399988606|ref|YP_006568956.1| bifunctional ribonuclease H/phosphoglycerate mutase [Mycobacterium
smegmatis str. MC2 155]
gi|118169016|gb|ABK69912.1| phosphoglycerate mutase [Mycobacterium smegmatis str. MC2 155]
gi|399233168|gb|AFP40661.1| Putative bifunctional ribonuclease H/phosphoglycerate mutase
[Mycobacterium smegmatis str. MC2 155]
Length = 365
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV+ A+ +V+ +E +G ATNNVAEYR LI GL+ A + G
Sbjct: 5 VEADGGSRGNPGPAGYGAVVYDADHATVLAERKEAIGRATNNVAEYRGLIAGLEAAAETG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G W++ + +L L + A L F I R NS AD
Sbjct: 65 ATEVAVSMDSKLVIEQMCGRWRVKHPDLIELQRRAAALAAGFDHVDYTWIPRERNSHADR 124
Query: 194 QAN------MGIYLKDGQVEAE 209
AN GI + D E++
Sbjct: 125 LANEAMDAAAGIAVPDKASESD 146
>gi|379715775|ref|YP_005304112.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 316]
gi|386740800|ref|YP_006213980.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 31]
gi|387139069|ref|YP_005695048.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|387141054|ref|YP_005697032.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 1/06-A]
gi|389850822|ref|YP_006353057.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 258]
gi|349735547|gb|AEQ07025.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|355392845|gb|AER69510.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 1/06-A]
gi|377654481|gb|AFB72830.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 316]
gi|384477494|gb|AFH91290.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 31]
gi|388248128|gb|AFK17119.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 258]
Length = 385
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG+G VL A ++ RL VG ATNNVAEY AL+ GL A + G
Sbjct: 5 IEADGGSRGNPGVAGSGTVLFDATHTEILRRLAYVVGTATNNVAEYHALLNGLTAARELG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G WKI + ++ L + + F S I RN N+ AD
Sbjct: 65 ATEVDVLMDSKLVVEQMSGRWKIKHPDMKQLALSCQHIASGFASITYTWIPRNQNARADE 124
Query: 194 QANMGI 199
AN +
Sbjct: 125 LANKAM 130
>gi|300858913|ref|YP_003783896.1| hypothetical protein cpfrc_01496 [Corynebacterium
pseudotuberculosis FRC41]
gi|375289094|ref|YP_005123635.1| bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383314669|ref|YP_005375524.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis P54B96]
gi|384505083|ref|YP_005681753.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 1002]
gi|384507183|ref|YP_005683852.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis C231]
gi|384509271|ref|YP_005685939.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis I19]
gi|384511360|ref|YP_005690938.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis PAT10]
gi|387137006|ref|YP_005692986.1| bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 42/02-A]
gi|300686367|gb|ADK29289.1| hypothetical protein cpfrc_01496 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206612|gb|ADL10954.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis C231]
gi|302331163|gb|ADL21357.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 1002]
gi|308276856|gb|ADO26755.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis I19]
gi|341825299|gb|AEK92820.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis PAT10]
gi|348607451|gb|AEP70724.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 42/02-A]
gi|371576383|gb|AEX39986.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 3/99-5]
gi|380870170|gb|AFF22644.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis P54B96]
Length = 385
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG+G VL A ++ RL VG ATNNVAEY AL+ GL A + G
Sbjct: 5 IEADGGSRGNPGVAGSGTVLFDATHTEILRRLAYVVGTATNNVAEYHALLNGLTAARELG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G WKI + ++ L + + F S I RN N+ AD
Sbjct: 65 ATEVDVLMDSKLVVEQMSGRWKIKHPDMKQLALSCQHIASGFASITYTWIPRNQNARADE 124
Query: 194 QANMGI 199
AN +
Sbjct: 125 LANKAM 130
>gi|365175798|ref|ZP_09363222.1| hypothetical protein HMPREF1006_01167 [Synergistes sp. 3_1_syn1]
gi|363612051|gb|EHL63609.1| hypothetical protein HMPREF1006_01167 [Synergistes sp. 3_1_syn1]
Length = 130
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG+AGAGA+L E + ++ +G TNN AEY A IL L A ++G K
Sbjct: 5 FDGASRGNPGEAGAGALLLDEGENTIWETARYLGKKTNNEAEYNAAILLLTAAKERGVKE 64
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
++V GDSKLV Q+ WKIN +L L K A E+ E + + + R N AD +N
Sbjct: 65 LKVYGDSKLVVCQLSKQWKINLPHLRELAKRAWEISEGM-TVRYEWVPRAKNKRADELSN 123
Query: 197 MGI 199
I
Sbjct: 124 EAI 126
>gi|417971389|ref|ZP_12612315.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
S9114]
gi|344044315|gb|EGV39993.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
S9114]
Length = 382
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGI-ATNNVAEYRALILGLKYAL 130
+E DG S+GNPG AG+G V+ +++ V+ + VG ATNNVAEYR L+ GLK A
Sbjct: 3 LVIEADGGSRGNPGVAGSGTVVYSDNKAEVLKEIAYVVGTKATNNVAEYRGLLEGLKAAR 62
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ G + V DSKLV Q+ G WKI + ++ L EAKE+ + S I R N
Sbjct: 63 ELGATSVDVYMDSKLVVEQMSGRWKIKHPDMKVLAIEAKEIASEIGSVSYTWIPREKNKR 122
Query: 191 ADAQANMGI 199
ADA +N+ +
Sbjct: 123 ADALSNVAM 131
>gi|145296194|ref|YP_001139015.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
R]
gi|140846114|dbj|BAF55113.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 380
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGI-ATNNVAEYRALILGLKYAL 130
+E DG S+GNPG AG+G V+ +++ V+ + VG ATNNVAEYR L+ GLK A
Sbjct: 3 LVIEADGGSRGNPGVAGSGTVVYSDNKAEVLKEIAYVVGTKATNNVAEYRGLLEGLKAAR 62
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ G + V DSKLV Q+ G WKI + ++ L EAKE+ + S I R N
Sbjct: 63 ELGATSVDVYMDSKLVVEQMSGRWKIKHPDMKVLALEAKEIASEIGSVSYTWIPREKNKR 122
Query: 191 ADAQANMGI 199
ADA +N+ +
Sbjct: 123 ADALSNVAM 131
>gi|19553436|ref|NP_601438.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 13032]
gi|62391077|ref|YP_226479.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 13032]
gi|418244137|ref|ZP_12870562.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 14067]
gi|19110481|dbj|BAB85788.1| RNase HI [Corynebacterium glutamicum]
gi|21325007|dbj|BAB99629.1| Phosphoglycerate mutase/fructose-2,6-bisphosphatase
[Corynebacterium glutamicum ATCC 13032]
gi|41326416|emb|CAF20578.1| Ribonuclease HI [Corynebacterium glutamicum ATCC 13032]
gi|354511814|gb|EHE84718.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 14067]
gi|385144336|emb|CCH25375.1| hypothetical protein WA5_2155 [Corynebacterium glutamicum K051]
Length = 382
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGI-ATNNVAEYRALILGLKYAL 130
+E DG S+GNPG AG+G V+ +++ V+ + VG ATNNVAEYR L+ GLK A
Sbjct: 3 LVIEADGGSRGNPGVAGSGTVVYSDNKAEVLKEIAYVVGTKATNNVAEYRGLLEGLKAAR 62
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ G + V DSKLV Q+ G WKI + ++ L EAKE+ + S I R N
Sbjct: 63 ELGATSVDVYMDSKLVVEQMSGRWKIKHPDMKVLAIEAKEIASEIGSVSYTWIPREKNKR 122
Query: 191 ADAQANMGI 199
ADA +N+ +
Sbjct: 123 ADALSNVAM 131
>gi|307150716|ref|YP_003886100.1| ribonuclease H [Cyanothece sp. PCC 7822]
gi|306980944|gb|ADN12825.1| ribonuclease H [Cyanothece sp. PCC 7822]
Length = 320
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L FDG S+GNPG+A AVL DG Y + E + +ATNN AEY LI+GL+ A + G
Sbjct: 16 LYFDGGSRGNPGEAAGAAVLVMPDGQK-YTVSEYISVATNNEAEYTGLIVGLQKAKELGI 74
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ + V+GDS+LV Q+ WK+N+ + +E + L + F+ ++ + R+ N ADA
Sbjct: 75 EALTVKGDSQLVINQVNRKWKVNSARMQKFYQEVQGLIKSFEKVTLDWVPRHENHLADAA 134
Query: 195 AN 196
N
Sbjct: 135 VN 136
>gi|448561164|ref|ZP_21634516.1| ribonuclease H [Haloferax prahovense DSM 18310]
gi|445721396|gb|ELZ73064.1| ribonuclease H [Haloferax prahovense DSM 18310]
Length = 197
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G + +G +V + +G TNN AEY AL+ L A + GY
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSNG-IVAEGSKRIGETTNNRAEYEALVEALSVAEEYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+LV Q++G WK N+ L +A+E F + + H+ R +N AD+ AN
Sbjct: 132 VDVRGDSQLVVKQVRGEWKTNDPGLRERRVKAREHLSTFDRWSLEHVPREINDRADSLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|448313766|ref|ZP_21503478.1| ribonuclease H [Natronolimnobius innermongolicus JCM 12255]
gi|445597076|gb|ELY51154.1| ribonuclease H [Natronolimnobius innermongolicus JCM 12255]
Length = 197
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG A G V+ DG +V E +G ATNN AEY ALI GL+ A GY
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDG-IVAEDGETIGTATNNQAEYEALIAGLEAASDYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I ++GDS+L+ Q++G + NN L EL +F+ + + ++ R +N AD N
Sbjct: 132 IHIRGDSELIVKQVRGEYDTNNPELREKRVTVHELLREFEEWTLEYVPREVNERADGLVN 191
>gi|448330824|ref|ZP_21520100.1| ribonuclease H [Natrinema versiforme JCM 10478]
gi|445610660|gb|ELY64429.1| ribonuclease H [Natrinema versiforme JCM 10478]
Length = 197
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG A G V+ DG +V E +G ATNN AEY ALI GL+ A GY
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDG-IVAEDGETIGTATNNQAEYEALIAGLEAARDYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + NN L A E+ + F + + ++ R +N AD N
Sbjct: 132 VHVRGDSELIVKQVRGEYDTNNPELREKRVTAHEILQAFDEWTLEYVPREVNDRADGLVN 191
>gi|300783100|ref|YP_003763391.1| bifunctional RNase H/acid phosphatase [Amycolatopsis mediterranei
U32]
gi|384146325|ref|YP_005529141.1| bifunctional RNase H/acid phosphatase [Amycolatopsis mediterranei
S699]
gi|399534986|ref|YP_006547648.1| bifunctional RNase H/acid phosphatase [Amycolatopsis mediterranei
S699]
gi|299792614|gb|ADJ42989.1| putative bifunctional RNase H/acid phosphatase [Amycolatopsis
mediterranei U32]
gi|340524479|gb|AEK39684.1| bifunctional RNase H/acid phosphatase [Amycolatopsis mediterranei
S699]
gi|398315756|gb|AFO74703.1| bifunctional RNase H/acid phosphatase [Amycolatopsis mediterranei
S699]
Length = 402
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 72/124 (58%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+E DG S+GNPG AG GAV++ DG V+ +E +G+ TNNVAEY LI GL A +
Sbjct: 1 MVVEADGGSRGNPGPAGYGAVVKDSDGQVLAERKESLGVVTNNVAEYNGLIAGLAAAAEL 60
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + V+ DSKLV Q+ G WKI + + L + AKEL F + I R NS AD
Sbjct: 61 GASTVDVRMDSKLVVEQMSGRWKIKHPGMQPLAERAKELAAGFSRVKYEWIPRAQNSHAD 120
Query: 193 AQAN 196
AN
Sbjct: 121 RLAN 124
>gi|448467480|ref|ZP_21599492.1| ribonuclease H [Halorubrum kocurii JCM 14978]
gi|445812356|gb|EMA62350.1| ribonuclease H [Halorubrum kocurii JCM 14978]
Length = 198
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G L DG +V E +G ATNN AEY ALI L+ A + G+
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDG-IVAEGGERIGRATNNQAEYAALIRALEAADEYGFDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I V+GDS+L+ Q++G W N+ L +EL ++F + I H+ R +N AD AN
Sbjct: 132 IDVRGDSQLIVKQVRGEWNANDPELRERRVRVRELLDRFDRWSIGHVPREINDRADDLAN 191
>gi|334563303|ref|ZP_08516294.1| bifunctional RNase H/acid phosphatase [Corynebacterium bovis DSM
20582]
Length = 398
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Query: 75 LEFDGASKGNPGQAGAGA-VLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AGAG+ VL A+ +V+ E + ATNNVAEY L+ L A G
Sbjct: 20 VECDGGSRGNPGTAGAGSLVLTADRRTVLATCHEYIPRATNNVAEYTGLVNALTLARDLG 79
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ + V DSKLV Q+ G WKI + ++ L K L++ F + + R N+ ADA
Sbjct: 80 ARRVHVHMDSKLVVEQMSGRWKIKHPDMKPLAATVKALEKDFDAVDYTWVPRADNARADA 139
Query: 194 QANMGIYLK 202
AN + K
Sbjct: 140 LANQAMDTK 148
>gi|322369393|ref|ZP_08043958.1| ribonuclease H [Haladaptatus paucihalophilus DX253]
gi|320551125|gb|EFW92774.1| ribonuclease H [Haladaptatus paucihalophilus DX253]
Length = 197
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREG---VGIATNNVAEYRALILGLKYALQ 131
L FDGAS+GNPG A G V+ DG EG +G ATNN AEY ALI GL+ A
Sbjct: 71 LYFDGASRGNPGPAATGWVIVTSDGIAA----EGGTRIGRATNNQAEYEALIEGLETARD 126
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G+ + V+GDS+L+ Q+ G WK NN L +EL E+F + + H+ R +N A
Sbjct: 127 YGFDSVDVKGDSQLIVKQVTGAWKTNNPELRERRVRVRELLEEFDKWSLKHVPREVNERA 186
Query: 192 DAQANMGIYLKDG 204
D AN L DG
Sbjct: 187 DKLANEA--LDDG 197
>gi|256395024|ref|YP_003116588.1| bifunctional RNase H/acid phosphatase [Catenulispora acidiphila DSM
44928]
gi|256361250|gb|ACU74747.1| Phosphoglycerate mutase [Catenulispora acidiphila DSM 44928]
Length = 427
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 75 LEFDGASKGNPGQAGAGA-VLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK--YALQ 131
+E DGAS+GNPG A GA V A G V+ L EG+G+ TNNVAEYR LI GL+ YAL
Sbjct: 7 VEADGASRGNPGPASYGALVADAATGEVLAELAEGLGVVTNNVAEYRGLIAGLRAAYALD 66
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+ + V+ DSKL Q+ G+W++ + ++ L +A+ + + + + R N A
Sbjct: 67 P-HAEVEVRMDSKLAVQQMSGVWQVKHPDIKQLAVQARTAFPQAGAVRYTWVPRAENKRA 125
Query: 192 DAQAN 196
DA AN
Sbjct: 126 DALAN 130
>gi|375141515|ref|YP_005002164.1| fructose-2,6-bisphosphatase [Mycobacterium rhodesiae NBB3]
gi|359822136|gb|AEV74949.1| fructose-2,6-bisphosphatase [Mycobacterium rhodesiae NBB3]
Length = 362
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D +V+ ++ +G +TNNVAEY LI GL+ A
Sbjct: 3 VIVEADGGSRGNPGPAGYGAVVWTVDRRTVLAERKQAIGHSTNNVAEYSGLIAGLEEAAT 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V DSKLV Q+ G WK+ + ++ L ++A L +F + R NS A
Sbjct: 63 LGASEVEVNMDSKLVVEQMSGRWKVKHPDMVPLHQQATALSTRFDRVTYTWVPREKNSHA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|384516107|ref|YP_005711199.1| hypothetical protein CULC809_01573 [Corynebacterium ulcerans 809]
gi|334697308|gb|AEG82105.1| hypothetical protein CULC809_01573 [Corynebacterium ulcerans 809]
Length = 385
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG+G VL A +++ RL VG ATNNVAEY AL+ GL A + G
Sbjct: 5 IEADGGSRGNPGVAGSGTVLFDATHTTILRRLAYIVGTATNNVAEYHALLNGLTAARELG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G WKI + ++ L +++ F S I R N+ AD
Sbjct: 65 ATEVDVLMDSKLVVEQMSGRWKIKHPDMKELALTCRDIASGFASITYTWIPRKQNARADE 124
Query: 194 QAN 196
AN
Sbjct: 125 LAN 127
>gi|421098044|ref|ZP_15558720.1| ribonuclease HI [Leptospira borgpetersenii str. 200901122]
gi|410798960|gb|EKS01044.1| ribonuclease HI [Leptospira borgpetersenii str. 200901122]
Length = 129
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG + G V +D +R+ E +G TNNVAE+ +L GL+ +++ + I
Sbjct: 7 DGASKGNPGPSSIGIVAYKDDKEE-FRISERIGETTNNVAEWASLKKGLEECIRRKFDTI 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
V DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 66 HVYMDSELVVRQVSGKYKVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 124
>gi|448400255|ref|ZP_21571322.1| ribonuclease H [Haloterrigena limicola JCM 13563]
gi|445667795|gb|ELZ20435.1| ribonuclease H [Haloterrigena limicola JCM 13563]
Length = 197
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG A G V+ DG +V E +G ATNN AEY ALI GL+ A GY
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDG-IVAEGGETIGTATNNQAEYEALIAGLEAARDYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + NN +L EL F + + ++ R++N AD N
Sbjct: 132 VHVRGDSELIVKQVRGEYDTNNPDLREKRVTVHELLAAFDEWTLEYVPRDVNERADGLVN 191
>gi|337291198|ref|YP_004630219.1| hypothetical protein CULC22_01590 [Corynebacterium ulcerans
BR-AD22]
gi|397654460|ref|YP_006495143.1| hypothetical protein CULC0102_1710 [Corynebacterium ulcerans 0102]
gi|334699504|gb|AEG84300.1| hypothetical protein CULC22_01590 [Corynebacterium ulcerans
BR-AD22]
gi|393403416|dbj|BAM27908.1| hypothetical protein CULC0102_1710 [Corynebacterium ulcerans 0102]
Length = 380
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG+G VL A +++ RL VG ATNNVAEY AL+ GL A + G
Sbjct: 5 IEADGGSRGNPGVAGSGTVLFDATHTTILRRLAYIVGTATNNVAEYHALLNGLTAARELG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G WKI + ++ L +++ F S I R N+ AD
Sbjct: 65 ATEVDVLMDSKLVVEQMSGRWKIKHPDMKELALTCRDIASGFASITYTWIPRKQNARADE 124
Query: 194 QAN 196
AN
Sbjct: 125 LAN 127
>gi|425454893|ref|ZP_18834618.1| Ribonuclease H like [Microcystis aeruginosa PCC 9807]
gi|389804308|emb|CCI16811.1| Ribonuclease H like [Microcystis aeruginosa PCC 9807]
Length = 279
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L FDG S+GNPG+A AV+ +G+ + R + IATNN AEY LI+GL+ A +
Sbjct: 11 SAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRY-MEIATNNEAEYTGLIIGLEKAQE 69
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS A
Sbjct: 70 LGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWRWIERAKNSVA 129
Query: 192 DAQAN 196
DA AN
Sbjct: 130 DAAAN 134
>gi|425443694|ref|ZP_18823765.1| Ribonuclease H like [Microcystis aeruginosa PCC 9443]
gi|389735879|emb|CCI00690.1| Ribonuclease H like [Microcystis aeruginosa PCC 9443]
Length = 279
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L FDG S+GNPG+A AV+ +G+ + R + IATNN AEY LI+GL+ A +
Sbjct: 11 SAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRY-MEIATNNEAEYTGLIIGLEKAQE 69
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS A
Sbjct: 70 LGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWRWIERAKNSVA 129
Query: 192 DAQAN 196
DA AN
Sbjct: 130 DAAAN 134
>gi|376290862|ref|YP_005163109.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae C7 (beta)]
gi|372104258|gb|AEX67855.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae C7 (beta)]
Length = 377
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 74/125 (59%), Gaps = 5/125 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE---GVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG+G ++ D S V L+E VG ATNNVAEY L+ GL+ A++
Sbjct: 5 IEADGGSRGNPGIAGSGTLIYNADRSQV--LKEYSYVVGKATNNVAEYHGLLNGLRGAVE 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WKI + ++ L E K+L S I R+ NS A
Sbjct: 63 LGATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKLASSIGSVSYEWIPRSENSHA 122
Query: 192 DAQAN 196
DA AN
Sbjct: 123 DALAN 127
>gi|441212168|ref|ZP_20975194.1| ribonuclease HI [Mycobacterium smegmatis MKD8]
gi|440626221|gb|ELQ88059.1| ribonuclease HI [Mycobacterium smegmatis MKD8]
Length = 365
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV+ A+ +V+ +E +G ATNNVAEYR LI GL+ A + G
Sbjct: 5 VEADGGSRGNPGPAGYGAVVYDADHATVLAERKEAIGRATNNVAEYRGLIAGLEAAAETG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G W++ + +L L + A L F I R NS AD
Sbjct: 65 AIEVAVSMDSKLVIEQMCGRWRVKHPDLIELQRRAAALAAGFDHVDYTWIPRERNSHADR 124
Query: 194 QAN 196
AN
Sbjct: 125 LAN 127
>gi|397679207|ref|YP_006520742.1| hypothetical protein MYCMA_0987 [Mycobacterium massiliense str. GO
06]
gi|418249476|ref|ZP_12875798.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus
47J26]
gi|420951465|ref|ZP_15414710.1| ribonuclease HI [Mycobacterium massiliense 2B-0626]
gi|420955636|ref|ZP_15418875.1| ribonuclease HI [Mycobacterium massiliense 2B-0107]
gi|420960762|ref|ZP_15423990.1| ribonuclease HI [Mycobacterium massiliense 2B-1231]
gi|420991604|ref|ZP_15454755.1| ribonuclease HI [Mycobacterium massiliense 2B-0307]
gi|420997443|ref|ZP_15460582.1| ribonuclease HI [Mycobacterium massiliense 2B-0912-R]
gi|421001877|ref|ZP_15465005.1| ribonuclease HI [Mycobacterium massiliense 2B-0912-S]
gi|353451131|gb|EHB99525.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus
47J26]
gi|392159547|gb|EIU85241.1| ribonuclease HI [Mycobacterium massiliense 2B-0626]
gi|392188268|gb|EIV13906.1| ribonuclease HI [Mycobacterium massiliense 2B-0307]
gi|392188328|gb|EIV13965.1| ribonuclease HI [Mycobacterium massiliense 2B-0912-R]
gi|392198489|gb|EIV24101.1| ribonuclease HI [Mycobacterium massiliense 2B-0912-S]
gi|392253827|gb|EIV79294.1| ribonuclease HI [Mycobacterium massiliense 2B-1231]
gi|392256164|gb|EIV81625.1| ribonuclease HI [Mycobacterium massiliense 2B-0107]
gi|395457472|gb|AFN63135.1| Uncharacterized protein MYCMA_0987 [Mycobacterium massiliense str.
GO 06]
Length = 367
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV+ + D +V+ + +G ATNNVAEYR LI GL A + G
Sbjct: 5 VEADGGSRGNPGLAGYGAVVFSPDHQTVLGEACDAIGHATNNVAEYRGLIAGLAEAARLG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G WK+ + +L L ++A +F+S I R N AD
Sbjct: 65 ATEVSVSMDSKLVVEQMSGRWKVKHPDLITLYQQAVTAAMQFESIDYRWIPRERNKHADR 124
Query: 194 QAN 196
AN
Sbjct: 125 LAN 127
>gi|365869848|ref|ZP_09409394.1| RNase H/acid phosphatase [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|414582616|ref|ZP_11439756.1| ribonuclease HI [Mycobacterium abscessus 5S-1215]
gi|420876923|ref|ZP_15340293.1| ribonuclease HI [Mycobacterium abscessus 5S-0304]
gi|420882488|ref|ZP_15345852.1| ribonuclease HI [Mycobacterium abscessus 5S-0421]
gi|420888552|ref|ZP_15351905.1| ribonuclease HI [Mycobacterium abscessus 5S-0422]
gi|420893582|ref|ZP_15356924.1| ribonuclease HI [Mycobacterium abscessus 5S-0708]
gi|420898183|ref|ZP_15361519.1| ribonuclease HI [Mycobacterium abscessus 5S-0817]
gi|420904204|ref|ZP_15367524.1| ribonuclease HI [Mycobacterium abscessus 5S-1212]
gi|420971250|ref|ZP_15434446.1| ribonuclease HI [Mycobacterium abscessus 5S-0921]
gi|421048746|ref|ZP_15511742.1| ribonuclease HI [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|363998031|gb|EHM19239.1| RNase H/acid phosphatase [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|392089544|gb|EIU15361.1| ribonuclease HI [Mycobacterium abscessus 5S-0304]
gi|392091543|gb|EIU17354.1| ribonuclease HI [Mycobacterium abscessus 5S-0421]
gi|392092166|gb|EIU17975.1| ribonuclease HI [Mycobacterium abscessus 5S-0422]
gi|392102172|gb|EIU27959.1| ribonuclease HI [Mycobacterium abscessus 5S-0708]
gi|392107424|gb|EIU33206.1| ribonuclease HI [Mycobacterium abscessus 5S-0817]
gi|392108028|gb|EIU33809.1| ribonuclease HI [Mycobacterium abscessus 5S-1212]
gi|392117768|gb|EIU43536.1| ribonuclease HI [Mycobacterium abscessus 5S-1215]
gi|392171657|gb|EIU97333.1| ribonuclease HI [Mycobacterium abscessus 5S-0921]
gi|392242911|gb|EIV68398.1| ribonuclease HI [Mycobacterium massiliense CCUG 48898]
Length = 367
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV+ + D +V+ + +G ATNNVAEYR LI GL A + G
Sbjct: 5 VEADGGSRGNPGLAGYGAVVFSPDHQTVLGEACDAIGHATNNVAEYRGLIAGLAEAARLG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G WK+ + +L L ++A +F+S I R N AD
Sbjct: 65 ATEVSVSMDSKLVVEQMSGRWKVKHPDLITLYQQAVTAAMQFESIDYRWIPRERNKHADR 124
Query: 194 QAN 196
AN
Sbjct: 125 LAN 127
>gi|111221655|ref|YP_712449.1| bifunctional RNase H/acid phosphatase [Frankia alni ACN14a]
gi|111149187|emb|CAJ60870.1| Putative bifunctional protein (Ribonuclease H/phosphoglycerate
mutase) [Frankia alni ACN14a]
Length = 394
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R A DG+V+ +G ATNNVAEY LI GL+ A +
Sbjct: 23 LVVEADGGSRGNPGPAGYGAVVRDAADGTVLAERAASIGHATNNVAEYSGLIAGLRAAAE 82
Query: 132 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ + DSKLV Q+ G WK+ + + L EA L F + + + R N++
Sbjct: 83 IAPDAEVEARLDSKLVVEQMSGRWKVKHPAMRPLADEAAALARTFPAVRYQWVPRARNAD 142
Query: 191 AD 192
AD
Sbjct: 143 AD 144
>gi|418420044|ref|ZP_12993225.1| RNase H/acid phosphatase [Mycobacterium abscessus subsp. bolletii
BD]
gi|363999881|gb|EHM21082.1| RNase H/acid phosphatase [Mycobacterium abscessus subsp. bolletii
BD]
Length = 367
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV+ + D +V+ + +G ATNNVAEYR LI GL A + G
Sbjct: 5 VEADGGSRGNPGLAGYGAVVFSPDHQTVLGEACDAIGHATNNVAEYRGLIAGLAEAARLG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G WK+ + +L L ++A +F+S I R N AD
Sbjct: 65 ATEVSVSMDSKLVVEQMSGRWKVKHPDLITLYQQAVTAAMQFESIDYKWIPRERNKHADR 124
Query: 194 QAN 196
AN
Sbjct: 125 LAN 127
>gi|169628993|ref|YP_001702642.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus ATCC
19977]
gi|419712078|ref|ZP_14239541.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus M93]
gi|420909486|ref|ZP_15372799.1| ribonuclease HI [Mycobacterium abscessus 6G-0125-R]
gi|420915872|ref|ZP_15379177.1| ribonuclease HI [Mycobacterium abscessus 6G-0125-S]
gi|420920256|ref|ZP_15383554.1| ribonuclease HI [Mycobacterium abscessus 6G-0728-S]
gi|420926757|ref|ZP_15390042.1| ribonuclease HI [Mycobacterium abscessus 6G-1108]
gi|420930953|ref|ZP_15394229.1| ribonuclease HI [Mycobacterium massiliense 1S-151-0930]
gi|420939217|ref|ZP_15402486.1| ribonuclease HI [Mycobacterium massiliense 1S-152-0914]
gi|420941211|ref|ZP_15404471.1| ribonuclease HI [Mycobacterium massiliense 1S-153-0915]
gi|420945750|ref|ZP_15409003.1| ribonuclease HI [Mycobacterium massiliense 1S-154-0310]
gi|420966268|ref|ZP_15429476.1| ribonuclease HI [Mycobacterium abscessus 3A-0810-R]
gi|420977101|ref|ZP_15440283.1| ribonuclease HI [Mycobacterium abscessus 6G-0212]
gi|420982482|ref|ZP_15445652.1| ribonuclease HI [Mycobacterium abscessus 6G-0728-R]
gi|421006644|ref|ZP_15469758.1| ribonuclease HI [Mycobacterium abscessus 3A-0119-R]
gi|421012405|ref|ZP_15475495.1| ribonuclease HI [Mycobacterium abscessus 3A-0122-R]
gi|421017273|ref|ZP_15480338.1| ribonuclease HI [Mycobacterium abscessus 3A-0122-S]
gi|421022493|ref|ZP_15485541.1| ribonuclease HI [Mycobacterium abscessus 3A-0731]
gi|421028797|ref|ZP_15491832.1| ribonuclease HI [Mycobacterium abscessus 3A-0930-R]
gi|421033596|ref|ZP_15496618.1| ribonuclease HI [Mycobacterium abscessus 3A-0930-S]
gi|169240960|emb|CAM61988.1| Putative phosphoglycerate mutase [Mycobacterium abscessus]
gi|382939400|gb|EIC63729.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus M93]
gi|392121860|gb|EIU47625.1| ribonuclease HI [Mycobacterium abscessus 6G-0125-R]
gi|392123556|gb|EIU49318.1| ribonuclease HI [Mycobacterium abscessus 6G-0125-S]
gi|392134261|gb|EIU60003.1| ribonuclease HI [Mycobacterium abscessus 6G-0728-S]
gi|392139165|gb|EIU64898.1| ribonuclease HI [Mycobacterium abscessus 6G-1108]
gi|392139971|gb|EIU65703.1| ribonuclease HI [Mycobacterium massiliense 1S-151-0930]
gi|392144732|gb|EIU70457.1| ribonuclease HI [Mycobacterium massiliense 1S-152-0914]
gi|392151338|gb|EIU77048.1| ribonuclease HI [Mycobacterium massiliense 1S-153-0915]
gi|392158958|gb|EIU84654.1| ribonuclease HI [Mycobacterium massiliense 1S-154-0310]
gi|392171360|gb|EIU97037.1| ribonuclease HI [Mycobacterium abscessus 6G-0212]
gi|392174500|gb|EIV00167.1| ribonuclease HI [Mycobacterium abscessus 6G-0728-R]
gi|392201187|gb|EIV26788.1| ribonuclease HI [Mycobacterium abscessus 3A-0119-R]
gi|392207255|gb|EIV32833.1| ribonuclease HI [Mycobacterium abscessus 3A-0122-R]
gi|392214076|gb|EIV39630.1| ribonuclease HI [Mycobacterium abscessus 3A-0122-S]
gi|392215190|gb|EIV40738.1| ribonuclease HI [Mycobacterium abscessus 3A-0731]
gi|392230137|gb|EIV55647.1| ribonuclease HI [Mycobacterium abscessus 3A-0930-S]
gi|392231362|gb|EIV56871.1| ribonuclease HI [Mycobacterium abscessus 3A-0930-R]
gi|392255269|gb|EIV80731.1| ribonuclease HI [Mycobacterium abscessus 3A-0810-R]
Length = 367
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV+ + D +V+ + +G ATNNVAEYR LI GL A + G
Sbjct: 5 VEADGGSRGNPGLAGYGAVVFSPDHQTVLGEACDAIGHATNNVAEYRGLIAGLAEAARLG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G WK+ + +L L ++A +F+S I R N AD
Sbjct: 65 ATEVSVSMDSKLVVEQMSGRWKVKHPDLITLYQQAVTAAMQFESVDYTWIPRERNKHADR 124
Query: 194 QAN 196
AN
Sbjct: 125 LAN 127
>gi|374854542|dbj|BAL57421.1| ribonuclease H [uncultured candidate division OP1 bacterium]
gi|374856950|dbj|BAL59803.1| ribonuclease H [uncultured candidate division OP1 bacterium]
Length = 180
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
DGA++GNPG A G V+ G+VV + E +G TNNVAEYRALI +K L K
Sbjct: 8 IDGAAQGNPGDAAIGIVITDAQGNVVKEIAEYIGRTTNNVAEYRALIEAIKAVLPYAPKR 67
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ DS+L+ Q+ GL++I +L L ++ EL E+ S+Q+N++ R+ N +A A
Sbjct: 68 VIFFTDSQLLANQVNGLYRIRRPHLEPLHRQVHELLEQLPSWQVNYVERDANWKAHRLAQ 127
Query: 197 MGIYLKDGQVEAEC 210
+ K + EAE
Sbjct: 128 KALLEKVAK-EAEA 140
>gi|284165858|ref|YP_003404137.1| ribonuclease H [Haloterrigena turkmenica DSM 5511]
gi|284015513|gb|ADB61464.1| ribonuclease H [Haloterrigena turkmenica DSM 5511]
Length = 197
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG A G V+ DG +V E +G ATNN AEY ALI GLK A GY
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDG-IVAEDGETIGTATNNQAEYEALIAGLKAARDYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ ++GDS+L+ Q++G + NN L EL F + + ++ R +N AD N
Sbjct: 132 VHIRGDSELIVKQVRGEYDTNNPELREKRVTVHELLGAFDEWTLEYVPREVNERADGLVN 191
>gi|385991572|ref|YP_005909870.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CCDC5180]
gi|339298765|gb|AEJ50875.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CCDC5180]
Length = 241
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D S V+ ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ A
Sbjct: 63 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|389863557|ref|YP_006365797.1| phosphoglycerate mutase [Modestobacter marinus]
gi|388485760|emb|CCH87308.1| Phosphoglycerate mutase [Modestobacter marinus]
Length = 369
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG GA++R AE G ++ E VG ATNNVAEY L+ GL+ AL
Sbjct: 12 VEADGGSRGNPGPAGYGALVRDAETGRLLAERAESVGRATNNVAEYGGLVAGLQAALDLD 71
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ V+ DSKLV Q+ G W+I + ++ L +A+++ + + + + R N AD
Sbjct: 72 PTASVEVRMDSKLVVEQMSGRWQIKHPDMKKLAVQARDIARQLGAVRYTWVPRAQNGAAD 131
Query: 193 AQAN 196
A AN
Sbjct: 132 ALAN 135
>gi|15789547|ref|NP_279371.1| hypothetical protein VNG0255C [Halobacterium sp. NRC-1]
gi|169235258|ref|YP_001688458.1| hypothetical protein OE1400F [Halobacterium salinarum R1]
gi|74581594|sp|Q9HSF6.1|RNH_HALSA RecName: Full=Ribonuclease HI; Short=Halo-RNase HI; Short=RNase HI
gi|10579895|gb|AAG18851.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167726324|emb|CAP13105.1| ribonuclease H, type 1 [Halobacterium salinarum R1]
Length = 199
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 70/120 (58%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G VL + DG +V + +G ATNN AEY ALI L+ A G+
Sbjct: 74 FDGASRGNPGPAAVGWVLVSGDGGIVAEGGDTIGRATNNQAEYDALIAALEAAADFGFDD 133
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I ++GDS+LV Q+ G W N+ +L A+EL F + I H+ R N ADA AN
Sbjct: 134 IELRGDSQLVEKQLTGAWDTNDPDLRRKRVRARELLTGFDDWSITHVPRATNERADALAN 193
>gi|420863765|ref|ZP_15327158.1| ribonuclease HI [Mycobacterium abscessus 4S-0303]
gi|420868165|ref|ZP_15331549.1| ribonuclease HI [Mycobacterium abscessus 4S-0726-RA]
gi|420872597|ref|ZP_15335977.1| ribonuclease HI [Mycobacterium abscessus 4S-0726-RB]
gi|420986789|ref|ZP_15449950.1| ribonuclease HI [Mycobacterium abscessus 4S-0206]
gi|421038986|ref|ZP_15501997.1| ribonuclease HI [Mycobacterium abscessus 4S-0116-R]
gi|421042955|ref|ZP_15505958.1| ribonuclease HI [Mycobacterium abscessus 4S-0116-S]
gi|392071858|gb|EIT97700.1| ribonuclease HI [Mycobacterium abscessus 4S-0726-RA]
gi|392074285|gb|EIU00124.1| ribonuclease HI [Mycobacterium abscessus 4S-0303]
gi|392076786|gb|EIU02619.1| ribonuclease HI [Mycobacterium abscessus 4S-0726-RB]
gi|392188206|gb|EIV13845.1| ribonuclease HI [Mycobacterium abscessus 4S-0206]
gi|392227200|gb|EIV52714.1| ribonuclease HI [Mycobacterium abscessus 4S-0116-R]
gi|392240886|gb|EIV66377.1| ribonuclease HI [Mycobacterium abscessus 4S-0116-S]
Length = 367
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV+ + D +V+ + +G ATNNVAEYR LI GL A + G
Sbjct: 5 VEADGGSRGNPGLAGYGAVVFSPDHQTVLGEACDAIGHATNNVAEYRGLIAGLAEAARLG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G WK+ + +L L ++A +F+S I R N AD
Sbjct: 65 ATEVSVSMDSKLVVEQMSGRWKVKHPDLITLYQQAVTAAMQFESVDYRWIPRERNKHADR 124
Query: 194 QAN 196
AN
Sbjct: 125 LAN 127
>gi|383458171|ref|YP_005372160.1| hypothetical protein COCOR_06207 [Corallococcus coralloides DSM
2259]
gi|380730805|gb|AFE06807.1| hypothetical protein COCOR_06207 [Corallococcus coralloides DSM
2259]
Length = 144
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 76/122 (62%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA++GN G AGA AVL +G+VV RL + +G TNN AEY L++GL++A G + +
Sbjct: 6 DGAARGNRGPAGAEAVLMNAEGAVVARLGKFLGHQTNNYAEYMGLLIGLQHAKSLGAREV 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
V DS+L+ Q+ G +++ + L L +EA++L F ++ H+ R N+EAD +N
Sbjct: 66 EVFADSELLIRQLGGKYQVKSPTLKPLFQEAQKLLATFGKVKLAHVPRAQNAEADEMSNR 125
Query: 198 GI 199
I
Sbjct: 126 AI 127
>gi|284991875|ref|YP_003410429.1| phosphoglycerate mutase [Geodermatophilus obscurus DSM 43160]
gi|284065120|gb|ADB76058.1| Phosphoglycerate mutase [Geodermatophilus obscurus DSM 43160]
Length = 363
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 74 TLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ- 131
+E DG S+GNPG AG GA++R A G V+ E VG ATNNVAEY L+ GL+ AL
Sbjct: 5 VVEADGGSRGNPGPAGYGALVRDATTGKVLAERAESVGRATNNVAEYGGLVAGLQAALDL 64
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+ V+ DSKLV Q+ G WK+ + ++ L +A+++ + S + + R N A
Sbjct: 65 DPTADVEVRMDSKLVVEQMSGRWKVKHPDMQKLALQARQIARQLGSVRYTWVPRAQNGAA 124
Query: 192 DAQAN 196
DA AN
Sbjct: 125 DALAN 129
>gi|419717139|ref|ZP_14244530.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus M94]
gi|382938582|gb|EIC62912.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus M94]
Length = 367
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV+ + D +V+ + +G ATNNVAEYR LI GL A + G
Sbjct: 5 VEADGGSRGNPGLAGYGAVVFSPDHQTVLGEACDAIGHATNNVAEYRGLIAGLAEAARLG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V DSKLV Q+ G WK+ + +L L ++A +F+S I R N AD
Sbjct: 65 ATEVSVSMDSKLVVEQMSGRWKVKHPDLITLYQQAVTAAMQFESVDYKWIPRERNKHADR 124
Query: 194 QAN 196
AN
Sbjct: 125 LAN 127
>gi|425460773|ref|ZP_18840254.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
9808]
gi|389826515|emb|CCI22922.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
9808]
Length = 279
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L FDG S+GNPG+A AV+ +G+ + R + IATNN AEY LI+GL+ A +
Sbjct: 11 SAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTSRY-MEIATNNEAEYTGLIIGLEKAQE 69
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS A
Sbjct: 70 LGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWRWIERAKNSVA 129
Query: 192 DAQAN 196
DA AN
Sbjct: 130 DAAAN 134
>gi|406885924|gb|EKD33032.1| ribonuclease H [uncultured bacterium]
Length = 139
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 73/122 (59%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG ++GNPG AG+GAVL ++DG + + + +G TNN AEY A++LGL A++ + +
Sbjct: 10 DGGARGNPGPAGSGAVLYSKDGKEIATVSKYIGNTTNNQAEYTAIVLGLSKAMELEAEEV 69
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
V DS+L Q+ G +K+ N +A E L+ KF++ + +H+ R NS AD N
Sbjct: 70 DVYLDSELAVKQLNGQYKVKNPEIAKRFLEVHNLRLKFRNVRFSHVRREKNSRADELVNN 129
Query: 198 GI 199
I
Sbjct: 130 AI 131
>gi|227548845|ref|ZP_03978894.1| bifunctional RNase H/acid phosphatase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079066|gb|EEI17029.1| bifunctional RNase H/acid phosphatase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 368
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVG-IATNNVAEYRALILGLKYALQKGYKH 136
DG S+GNPG AG+G+V+ DG+ + + VG ++NNVAEY L+ GL+ A + G
Sbjct: 8 DGGSRGNPGVAGSGSVVYGADGTTLAEVAYVVGQKSSNNVAEYHGLLRGLEAAREAGATE 67
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V DSKLV Q+ G WKI + ++A L ++A+ L F S + R N +AD +N
Sbjct: 68 VEVYMDSKLVVEQMSGRWKIKHPDMADLARQARSLAAGFSSVTYTWVPRAKNKKADELSN 127
Query: 197 M 197
+
Sbjct: 128 V 128
>gi|359726860|ref|ZP_09265556.1| ribonuclease HI [Leptospira weilii str. 2006001855]
Length = 178
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG + G V +D +R+ E +G TNNVAE+ +L GL+ +++ + I
Sbjct: 56 DGASKGNPGPSSIGIVAYKDDKEE-FRISERIGETTNNVAEWASLKKGLEECIRRKFDTI 114
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
V DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 115 HVYMDSELVVRQVGGKYKVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 173
>gi|330469452|ref|YP_004407195.1| phosphoglycerate mutase [Verrucosispora maris AB-18-032]
gi|328812423|gb|AEB46595.1| phosphoglycerate mutase [Verrucosispora maris AB-18-032]
Length = 403
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL 130
+ +E DG ++GNPG AG GAVLR G V+ +G ATNNVAEY+ L+ GL A+
Sbjct: 5 TVLVEADGGARGNPGPAGYGAVLRDPATGEVLAERSAAIGTATNNVAEYQGLLAGLTAAV 64
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
+ G + V+ DSKLV Q+ G W+I + L L +A +L + + + I R+ N+
Sbjct: 65 ELGATEVEVRMDSKLVVEQMSGRWQIKHPGLRPLAAQAVQLVGRIGTVRFTWIPRDRNT 123
>gi|417781679|ref|ZP_12429428.1| ribonuclease HI [Leptospira weilii str. 2006001853]
gi|410778410|gb|EKR63039.1| ribonuclease HI [Leptospira weilii str. 2006001853]
Length = 129
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG + G V +D +R+ E +G TNNVAE+ +L GL+ +++ + I
Sbjct: 7 DGASKGNPGPSSIGIVAYKDDKEE-FRISERIGETTNNVAEWASLKKGLEECIRRKFDTI 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
V DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 66 HVYMDSELVVRQVGGKYKVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 124
>gi|425452493|ref|ZP_18832310.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
7941]
gi|389765698|emb|CCI08487.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
7941]
Length = 279
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L FDG S+GNPG+A AV+ +G+ + R + IATNN AEY LI+GL+ A +
Sbjct: 11 SAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTSRY-MEIATNNEAEYTGLIIGLEKAQE 69
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS A
Sbjct: 70 LGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVTQFDRISWRWIERAKNSVA 129
Query: 192 DAQAN 196
DA AN
Sbjct: 130 DAAAN 134
>gi|397772844|ref|YP_006540390.1| ribonuclease H [Natrinema sp. J7-2]
gi|448340530|ref|ZP_21529501.1| ribonuclease H [Natrinema gari JCM 14663]
gi|397681937|gb|AFO56314.1| ribonuclease H [Natrinema sp. J7-2]
gi|445629963|gb|ELY83233.1| ribonuclease H [Natrinema gari JCM 14663]
Length = 197
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG A G V+ DG +V E +G +TNN AEY ALI GL+ A GY
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDG-IVAEDGETIGTSTNNQAEYEALIAGLEAARDYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + N+ +L +EL F + + ++ R +N AD N
Sbjct: 132 VHVRGDSELIVKQVRGEYDTNDPDLREKRVTVRELLRAFDEWTLEYVPREVNDRADGLVN 191
>gi|72162352|ref|YP_290009.1| bifunctional RNase H/acid phosphatase [Thermobifida fusca YX]
gi|71916084|gb|AAZ55986.1| conserved hypothetical protein [Thermobifida fusca YX]
Length = 382
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 77/135 (57%), Gaps = 5/135 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+E DGAS+GNPG AG GA +R A+ G ++ + +G ATNNVAEYR LI GL+ A
Sbjct: 10 VIEADGASRGNPGPAGYGARVRDADTGELLAEVASPIGEATNNVAEYRGLIAGLEAAAAI 69
Query: 133 GYKH-IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+ V+ DSKLV Q+ G WKI + L L ++A+++ S + R N++A
Sbjct: 70 DPTAAVEVRMDSKLVVEQMSGRWKIKHPALQPLARQARQVAASLASVTYRWVPREQNAQA 129
Query: 192 DAQANMGIYLKDGQV 206
D AN + DG V
Sbjct: 130 DRLANEAL---DGAV 141
>gi|443659661|ref|ZP_21132410.1| RNase H family protein [Microcystis aeruginosa DIANCHI905]
gi|159029413|emb|CAO90789.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332679|gb|ELS47275.1| RNase H family protein [Microcystis aeruginosa DIANCHI905]
Length = 283
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L FDG S+GNPG+A AV+ +G + R + IATNN AEY LI+GL+ A +
Sbjct: 15 SAVLYFDGGSRGNPGRAAGAAVIVLAEGKSLTTSRY-MEIATNNEAEYTGLIIGLEKAQE 73
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS A
Sbjct: 74 LGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVTQFDRISWRWIERAKNSVA 133
Query: 192 DAQAN 196
DA AN
Sbjct: 134 DAAAN 138
>gi|429203761|ref|ZP_19195078.1| ribonuclease HI [Streptomyces ipomoeae 91-03]
gi|428660773|gb|EKX60312.1| ribonuclease HI [Streptomyces ipomoeae 91-03]
Length = 618
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 72/125 (57%), Gaps = 5/125 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG G+V+R A G + E +G+ATNNVAEYR LI GLK A
Sbjct: 6 VEADGGSRGNPGPAGYGSVVRDAATGETLAEAAEYIGVATNNVAEYRGLIAGLKAARALD 65
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKE-LKEKFQSFQINHILRNLNSEA 191
+RV+ DSKLV Q+ G WKI + ++ L EA L +++ I R+ N A
Sbjct: 66 PTATVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAARILPPDHVTYE--WIPRDQNKHA 123
Query: 192 DAQAN 196
D AN
Sbjct: 124 DRLAN 128
>gi|398337107|ref|ZP_10521812.1| ribonuclease HI [Leptospira kmetyi serovar Malaysia str. Bejo-Iso9]
Length = 129
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVV-YRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ DGASKGNPG + G V A DG +++ E +G TNNVAE+ AL GL+ +++
Sbjct: 3 TIFCDGASKGNPGPSSIGVV--AYDGDKEEFKISERIGETTNNVAEWTALKKGLEECIRR 60
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + DS+LV Q+ G +K+ + NL KE +L QSFQI H+ R NS AD
Sbjct: 61 NFLSVHAHMDSELVVRQVTGRYKVKHPNLLEYKKEVDKLVSSLQSFQITHVPREKNSVAD 120
Query: 193 AQAN 196
AN
Sbjct: 121 KLAN 124
>gi|448391653|ref|ZP_21566748.1| ribonuclease H [Haloterrigena salina JCM 13891]
gi|445665065|gb|ELZ17743.1| ribonuclease H [Haloterrigena salina JCM 13891]
Length = 197
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG A G V+ DG +V E +G ATNN AEY ALI GL+ A GY
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDG-IVAEDGETIGTATNNQAEYEALIAGLEAARDYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + NN L EL F + + ++ R +N AD N
Sbjct: 132 VHVRGDSELIVKQVRGEYDTNNPELREKRVTVHELLGAFDEWTLEYVPREVNDRADGLVN 191
>gi|348171541|ref|ZP_08878435.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Saccharopolyspora spinosa NRRL 18395]
Length = 399
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R A G V+ G+G+ TNNVAEY+ +I GL A +
Sbjct: 5 VVVEADGGSRGNPGPAGCGAVVRDAGSGEVLAERSIGLGVTTNNVAEYQGVIAGLLAAAE 64
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKL+ Q+ G WK+ + NL L EA++L F+ + + R N+ A
Sbjct: 65 LGAAAVEVRMDSKLIIEQLAGRWKVKHANLQPLAAEARQLIAGFEQVSLEWVPRAQNAHA 124
Query: 192 DAQAN 196
D AN
Sbjct: 125 DRLAN 129
>gi|376248942|ref|YP_005140886.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae HC04]
gi|376251740|ref|YP_005138621.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae HC03]
gi|376257554|ref|YP_005145445.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae VA01]
gi|372113244|gb|AEX79303.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae HC03]
gi|372115510|gb|AEX81568.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae HC04]
gi|372120071|gb|AEX83805.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae VA01]
Length = 375
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE---GVGIATNNVAEYRALILGLKYA 129
+E DG S+GNPG AG+G ++ D S V L+E VG ATNNVAEY L+ GL+ A
Sbjct: 3 VIIEADGGSRGNPGIAGSGTLIYNADRSQV--LKEYSYVVGKATNNVAEYHGLLNGLRGA 60
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
+ G + V+ DSKLV Q+ G WKI + ++ L E K+L S I R+ NS
Sbjct: 61 AELGATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKLASSIGSVSYEWIPRSENS 120
Query: 190 EADAQAN 196
ADA AN
Sbjct: 121 HADALAN 127
>gi|433590945|ref|YP_007280441.1| ribonuclease HI [Natrinema pellirubrum DSM 15624]
gi|448334478|ref|ZP_21523653.1| ribonuclease H [Natrinema pellirubrum DSM 15624]
gi|433305725|gb|AGB31537.1| ribonuclease HI [Natrinema pellirubrum DSM 15624]
gi|445619810|gb|ELY73327.1| ribonuclease H [Natrinema pellirubrum DSM 15624]
Length = 197
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG A G V+ DG +V E +G ATNN AEY ALI GL+ A GY
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDG-IVAEDGETIGTATNNQAEYEALIAGLEAARDYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + N+ +L EL F + + ++ R +N AD N
Sbjct: 132 VHVRGDSELIVKQVRGEYDTNDPDLRENRVTVHELLRAFDEWTLEYVPREVNDRADGLVN 191
>gi|452945313|gb|EME50836.1| bifunctional RNase H/acid phosphatase [Amycolatopsis decaplanina
DSM 44594]
Length = 373
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 82/142 (57%), Gaps = 2/142 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV++ A G V+ + VGIATNNVAEY LI GL A + G
Sbjct: 7 VEADGGSRGNPGPAGYGAVVKDAATGEVLAERKAYVGIATNNVAEYGGLIAGLAAAAELG 66
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V+ DSKLV Q+ G WK+ + ++ L EAKEL +F + I R NS AD
Sbjct: 67 ASTVDVRMDSKLVVEQMSGRWKVKHPSMQPLNAEAKELAARFSRVRYEWIPRAENSHADG 126
Query: 194 QANMGIYL-KDGQVEAECSSFT 214
AN + +DG+ + E T
Sbjct: 127 LANEAMDAGRDGEKQPEAPRKT 148
>gi|456390282|gb|EMF55677.1| ribonuclease [Streptomyces bottropensis ATCC 25435]
Length = 476
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 72/126 (57%), Gaps = 7/126 (5%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG G+V L A G + E +G+ATNNVAEYR LI GLK A +
Sbjct: 6 VEADGGSRGNPGPAGYGSVVLDAVTGETLVETAEYIGVATNNVAEYRGLIAGLKAAYELD 65
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSE 190
+RV+ DSKLV Q+ G WKI + ++ L EA + F ++ + + R N
Sbjct: 66 PEASVRVRMDSKLVVEQLSGRWKIKHPDMKPLAAEAARV---FPPGRVTYEWMPREQNKH 122
Query: 191 ADAQAN 196
AD AN
Sbjct: 123 ADRLAN 128
>gi|119716247|ref|YP_923212.1| phosphoglycerate mutase [Nocardioides sp. JS614]
gi|119536908|gb|ABL81525.1| Phosphoglycerate mutase [Nocardioides sp. JS614]
Length = 401
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL 130
S +E DG S+GNPG A GAVLR AE G+V+ +GIA+NNVAEY LI GL+ A
Sbjct: 4 SVVVEADGGSRGNPGPAAYGAVLRDAETGAVIAEDATAIGIASNNVAEYSGLIAGLRLAE 63
Query: 131 QKGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
+ I V+ DSKLV Q+ G WKI + ++ L EA L ++ + R N
Sbjct: 64 RFAPDADIEVRMDSKLVVEQMSGRWKIKHPDMRPLATEASRLAPFGTTY--TWVPREQNK 121
Query: 190 EADAQAN 196
AD AN
Sbjct: 122 HADRLAN 128
>gi|298711927|emb|CBJ48614.1| ribonuclease H [Ectocarpus siliculosus]
Length = 523
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 76/131 (58%), Gaps = 8/131 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYR----LREGVGIATNNVAEYRALILGLKYA 129
TL FDG +GNPG +GAGAV+ + +Y L EG TNN AEY ++ILGLK A
Sbjct: 47 TLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEG---KTNNEAEYESVILGLKAA 103
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ-SFQINHILRNLN 188
+ + V+GDS LV Q+ G W+++ L GL ++A E+ ++ Q +H+ R LN
Sbjct: 104 AKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLN 163
Query: 189 SEADAQANMGI 199
AD AN+ +
Sbjct: 164 VRADLLANIAM 174
>gi|422301806|ref|ZP_16389171.1| Ribonuclease H like [Microcystis aeruginosa PCC 9806]
gi|389789176|emb|CCI14829.1| Ribonuclease H like [Microcystis aeruginosa PCC 9806]
Length = 279
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L FDG S+GNPG+A AV+ +G+ + R + IATNN AEY LI+GL+ A +
Sbjct: 11 SAILYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRY-MEIATNNEAEYTGLIIGLEKAQE 69
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS A
Sbjct: 70 LGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWCWIERAKNSVA 129
Query: 192 DAQAN 196
DA AN
Sbjct: 130 DAAAN 134
>gi|418050525|ref|ZP_12688611.1| Phosphoglycerate mutase [Mycobacterium rhodesiae JS60]
gi|353188149|gb|EHB53670.1| Phosphoglycerate mutase [Mycobacterium rhodesiae JS60]
Length = 357
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG G V+ + D +V+ +G+ TNNVAEYR LI GL+ A G
Sbjct: 5 VEADGGSRGNPGPAGYGCVVWSADHQTVLAEHGTAIGVTTNNVAEYRGLIAGLEEARALG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ V DSKLV Q+ G WK+ + +A L ++A+ L F S I R NS AD
Sbjct: 65 ANEVAVSMDSKLVVEQMTGRWKVKHPAMAELQQQARALASTFDSVTYEWIPREQNSYAD 123
>gi|383785249|ref|YP_005469819.1| ribonuclease H [Leptospirillum ferrooxidans C2-3]
gi|383084162|dbj|BAM07689.1| putative ribonuclease H [Leptospirillum ferrooxidans C2-3]
Length = 134
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVY----RLREGVGIATNNVAEYRALILGLKYALQKG 133
DGAS+GNPG + G L E G V RL EG TNNVAEY A++ GL A + G
Sbjct: 6 DGASRGNPGPSSYGWTLVDESGKCVREAGKRLPEG----TNNVAEYEAMVAGLTAACELG 61
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ + V+ DS+LV Q+ G +K+ + L L ++ EL +F H+ R N ADA
Sbjct: 62 IRQVVVRADSELVIRQVTGRYKVKSPGLFPLYQKVMELSGRFDRISFEHVPREQNKRADA 121
Query: 194 QANMGI 199
ANM +
Sbjct: 122 LANMAL 127
>gi|448445089|ref|ZP_21590144.1| ribonuclease H [Halorubrum saccharovorum DSM 1137]
gi|445685395|gb|ELZ37749.1| ribonuclease H [Halorubrum saccharovorum DSM 1137]
Length = 198
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G L DG +V E +G ATNN AEY ALI L+ A + G+
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDG-IVAEGGERIGRATNNQAEYAALIRALEAADEYGFDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I V+GDS+L+ Q++G W N+ L +EL E+F + I H+ R +N AD AN
Sbjct: 132 IDVRGDSQLIVKQVRGEWNANDPELRERRVRVRELLERFDRWSIGHVPREINDRADDLAN 191
>gi|336178893|ref|YP_004584268.1| phosphoglycerate mutase [Frankia symbiont of Datisca glomerata]
gi|334859873|gb|AEH10347.1| Phosphoglycerate mutase [Frankia symbiont of Datisca glomerata]
Length = 380
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREG-VGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GA++R D V R G +G ATNNVAEY+ LI GL+ A
Sbjct: 9 LVVEADGGSRGNPGPAGYGALVRDADTGAVLAERAGAIGRATNNVAEYQGLIAGLRAAAD 68
Query: 132 KGYKH-IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ V+ DSKLV Q+ G WKI + + L +A ++ +F + I R N+
Sbjct: 69 LAPDADVEVRMDSKLVVEQMSGRWKIKHPAMRPLATQAADVAREFPRVRYTWIPRERNAH 128
Query: 191 ADAQAN 196
AD AN
Sbjct: 129 ADRLAN 134
>gi|448385420|ref|ZP_21563926.1| ribonuclease H [Haloterrigena thermotolerans DSM 11522]
gi|445656915|gb|ELZ09747.1| ribonuclease H [Haloterrigena thermotolerans DSM 11522]
Length = 197
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG A G V+ DG +V E +G ATNN AEY ALI GL+ A GY
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDG-IVAEDGETIGTATNNQAEYEALIAGLEAARDYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + N+ +L EL F + + ++ R +N AD N
Sbjct: 132 VHVRGDSELIVKQVRGEYDTNDPDLRENRVTVHELLRAFDEWTLEYVPREVNDRADGLVN 191
>gi|448346311|ref|ZP_21535197.1| ribonuclease H [Natrinema altunense JCM 12890]
gi|445632900|gb|ELY86106.1| ribonuclease H [Natrinema altunense JCM 12890]
Length = 197
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG A G V+ DG +V E +G ATNN AEY ALI GL+ A Y
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDG-IVAEGGETIGTATNNQAEYEALITGLEAARDYDYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + N+ +L +EL +F + + ++ R +N AD N
Sbjct: 132 VHVRGDSELIVKQVRGEYDTNDPDLREKRVTVRELLREFDEWTLEYVPREVNDRADGLVN 191
>gi|424868008|ref|ZP_18291776.1| Putative ribonuclease H [Leptospirillum sp. Group II 'C75']
gi|206603679|gb|EDZ40159.1| Putative ribonuclease H [Leptospirillum sp. Group II '5-way CG']
gi|387221603|gb|EIJ76144.1| Putative ribonuclease H [Leptospirillum sp. Group II 'C75']
Length = 134
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 72/119 (60%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG + G +L+ E+G V++ + TNN AEY+ALI GL+ A +G +++
Sbjct: 6 DGASRGNPGPSSIGYLLQDEEGRVIFSEGRVLPPGTNNQAEYQALIAGLQAARDRGVRNL 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
V+ DS+L+ Q+ G +++ + L ++A L F + Q HI R N++AD AN
Sbjct: 66 LVRADSELMIRQMTGKYRVRHPGLLACYEQATNLSRSFDTIQFEHIPREQNAQADRLAN 124
>gi|345004168|ref|YP_004807021.1| ribonuclease H [halophilic archaeon DL31]
gi|344319794|gb|AEN04648.1| ribonuclease H [halophilic archaeon DL31]
Length = 197
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG A G V+ + DG ++ E +G ATNN AEY ALI L+ A G +
Sbjct: 73 FDGGSRGNPGPAAVGWVIVSGDG-ILAEGGETIGRATNNQAEYAALIRVLEAAGDLGIEE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ ++GDS+L+ Q++G W N+ L EA+EL F + I H+ R +N AD A+
Sbjct: 132 LDIRGDSQLIVKQVRGEWDTNDPELKQKRVEARELLIGFDRWDIEHVPREINERADELAD 191
>gi|451944722|ref|YP_007465358.1| bifunctional RNase H/acid phosphatase [Corynebacterium halotolerans
YIM 70093 = DSM 44683]
gi|451904109|gb|AGF72996.1| bifunctional RNase H/acid phosphatase [Corynebacterium halotolerans
YIM 70093 = DSM 44683]
Length = 407
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG+G V+ D +V+ + VG ATNNVAEY ++ GL+ A + G
Sbjct: 5 IEADGGSRGNPGVAGSGTVVYDADRNVLREIAYVVGKRATNNVAEYHGMLRGLEAARELG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ + DSKLV Q+ G WKI + ++ L EA+++ F S + R N ADA
Sbjct: 65 ASEVEIYLDSKLVVEQMSGRWKIKHPDMQKLAIEARKIMSTFDSVTFTWVPRAKNKAADA 124
Query: 194 QANM 197
+N+
Sbjct: 125 LSNV 128
>gi|448302992|ref|ZP_21492942.1| ribonuclease H [Natronorubrum sulfidifaciens JCM 14089]
gi|445593999|gb|ELY48166.1| ribonuclease H [Natronorubrum sulfidifaciens JCM 14089]
Length = 197
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGA +GNPG A G V+ DG +V E +G TNN AEY ALI L+ A GY
Sbjct: 73 FDGACRGNPGPAATGWVIVTGDG-IVAEGGERLGTTTNNQAEYAALISALETARDYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ ++GDS+L+ Q+ G + NN L L EL F + + H+ R +N AD AN
Sbjct: 132 VHIRGDSELIVKQVHGEYDTNNPELRELRVTVHELLTSFDEWTLEHVPREVNGRADRLAN 191
>gi|440700793|ref|ZP_20883028.1| ribonuclease HI [Streptomyces turgidiscabies Car8]
gi|440276655|gb|ELP64887.1| ribonuclease HI [Streptomyces turgidiscabies Car8]
Length = 386
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 70/126 (55%), Gaps = 6/126 (4%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-- 131
+E DG S+GNPG AG G+V + A G + + E +GIATNNVAEYR LI GL+ A Q
Sbjct: 6 VEADGGSRGNPGPAGYGSVVIDAATGETLVEVAEYIGIATNNVAEYRGLIAGLRAAHQLD 65
Query: 132 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
H+R+ DSKLV Q+ G WKI + ++ L EA ++ I R N
Sbjct: 66 PDATVHVRM--DSKLVVEQMSGRWKIKHPDMKPLAAEAAKVFSVVGQVTYEWIPRGRNKH 123
Query: 191 ADAQAN 196
AD AN
Sbjct: 124 ADRLAN 129
>gi|376285171|ref|YP_005158381.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae 31A]
gi|371578686|gb|AEX42354.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae 31A]
Length = 377
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG+G ++ D S V+ + VG ATNNVAEY L+ GL+ A +
Sbjct: 3 VIIEADGGSRGNPGIAGSGTLIYNADRSQVLKKYSYVVGKATNNVAEYHGLLNGLRGAAE 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS A
Sbjct: 63 LGATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENSHA 122
Query: 192 DAQAN 196
DA AN
Sbjct: 123 DALAN 127
>gi|386813851|ref|ZP_10101075.1| ribonuclease H [planctomycete KSU-1]
gi|386403348|dbj|GAB63956.1| ribonuclease H [planctomycete KSU-1]
Length = 203
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 73/122 (59%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG+AG G V+ ++ ++ +G +TNNVAEYR++IL + A+ K +
Sbjct: 76 DGASRGNPGKAGIGIVIYDKEHHIIEEACRYIGKSTNNVAEYRSMILAAQKAIHHNAKRV 135
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+L+ Q+ G++++ + ++ L E L K ++I H+ R N ADA AN
Sbjct: 136 IFKTDSELLVRQLNGIYRVKSASILPLYNELMALLHKISVWKIQHVRREENIHADALANQ 195
Query: 198 GI 199
GI
Sbjct: 196 GI 197
>gi|419861224|ref|ZP_14383862.1| bifunctional RNase H/acid phosphatase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
gi|387982293|gb|EIK55800.1| bifunctional RNase H/acid phosphatase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
Length = 377
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG+G ++ D S V+ + VG ATNNVAEY L+ GL+ A +
Sbjct: 3 VIIEADGGSRGNPGIAGSGTLIYNADRSQVLKKYSYVVGKATNNVAEYHGLLNGLRGAAE 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS A
Sbjct: 63 LGATEVSVRMDSKLVIEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENSHA 122
Query: 192 DAQAN 196
DA AN
Sbjct: 123 DALAN 127
>gi|376243258|ref|YP_005134110.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae CDCE 8392]
gi|372106500|gb|AEX72562.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae CDCE 8392]
Length = 377
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 5/125 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE---GVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG+G ++ D S V L+E VG ATNNVAEY L+ GL+ A +
Sbjct: 5 IEADGGSRGNPGIAGSGTLIYNADRSQV--LKEYSYVVGKATNNVAEYHGLLNGLRGAAE 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS A
Sbjct: 63 LGVTEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENSHA 122
Query: 192 DAQAN 196
DA AN
Sbjct: 123 DALAN 127
>gi|448306240|ref|ZP_21496149.1| ribonuclease H [Natronorubrum bangense JCM 10635]
gi|445598654|gb|ELY52709.1| ribonuclease H [Natronorubrum bangense JCM 10635]
Length = 197
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGA +GNPG A G V+ DG +V E +G TNN AEY ALI L+ A GY
Sbjct: 73 FDGACRGNPGPAATGWVIVTGDG-IVAEGGERIGTTTNNQAEYAALISALETARDYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + NN L EL F + + H+ R +N+ AD AN
Sbjct: 132 VHVRGDSELIVKQVRGEYDTNNPELREQRVTVHELLSAFDEWTLEHVPREINARADRLAN 191
>gi|429192471|ref|YP_007178149.1| ribonuclease HI [Natronobacterium gregoryi SP2]
gi|448325883|ref|ZP_21515261.1| ribonuclease H [Natronobacterium gregoryi SP2]
gi|429136689|gb|AFZ73700.1| ribonuclease HI [Natronobacterium gregoryi SP2]
gi|445613975|gb|ELY67660.1| ribonuclease H [Natronobacterium gregoryi SP2]
Length = 196
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L FDG ++GNPG A G V+ DG +V E +G ATNN AEY ALI L+ A GY
Sbjct: 71 LYFDGGARGNPGPAAIGWVIVTGDG-IVAEGSERIGRATNNQAEYAALIAVLEAARDYGY 129
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
++++GDS+L+ Q++G + NN L EL F + I H+ R +N AD
Sbjct: 130 DEVQIRGDSELIVKQVRGEYDTNNPELREKRVTVHELLSSFDEWAIEHVPREVNERADEL 189
Query: 195 AN 196
AN
Sbjct: 190 AN 191
>gi|290960926|ref|YP_003492108.1| ribonuclease [Streptomyces scabiei 87.22]
gi|260650452|emb|CBG73568.1| putative ribonuclease [Streptomyces scabiei 87.22]
Length = 492
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 72/126 (57%), Gaps = 7/126 (5%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG G+V L A G + E +G+ATNNVAEYR LI GLK A +
Sbjct: 6 VEADGGSRGNPGPAGYGSVVLDAVTGETLVEAAEYIGVATNNVAEYRGLIAGLKAAYELD 65
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSE 190
+RV+ DSKLV Q+ G WKI + ++ L EA + F ++ + + R N
Sbjct: 66 PEASVRVRMDSKLVVEQLSGRWKIKHPDMKPLAAEAARV---FPPGRVTYEWMPREQNKH 122
Query: 191 ADAQAN 196
AD AN
Sbjct: 123 ADRLAN 128
>gi|386839876|ref|YP_006244934.1| hypothetical protein SHJG_3789 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374100177|gb|AEY89061.1| hypothetical protein SHJG_3789 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451793170|gb|AGF63219.1| hypothetical protein SHJGH_3554 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 468
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 74/128 (57%), Gaps = 11/128 (8%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLK--YALQ 131
+E DG S+GNPG AG GAV L G + E +G+ATNNVAEYR L+ GL+ +AL
Sbjct: 6 VEADGGSRGNPGPAGYGAVVLDGATGEALTEAAEYIGVATNNVAEYRGLLAGLRAAHALD 65
Query: 132 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 188
+ H+R+ DSKLV Q+ G WKI + ++ L EA+ + + Q+ + I R N
Sbjct: 66 PSARVHVRM--DSKLVIEQMSGRWKIKHPDMKPLAAEARSV---YPPDQVTYEWIPRERN 120
Query: 189 SEADAQAN 196
AD AN
Sbjct: 121 KHADRLAN 128
>gi|410941364|ref|ZP_11373163.1| ribonuclease HI [Leptospira noguchii str. 2006001870]
gi|410783923|gb|EKR72915.1| ribonuclease HI [Leptospira noguchii str. 2006001870]
Length = 129
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ DGASKGNPG + G V + +R+ E +G TNNVAE+ AL G++ + +
Sbjct: 3 TIYCDGASKGNPGPSSVGVVAYVHEKEE-FRISERIGETTNNVAEWSALKRGIEECISRK 61
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ I DS+LV Q+ G +K+ + NL KE +L QSF+I H+ R NS AD
Sbjct: 62 FNSIHAYMDSELVVKQVIGKYKVKHPNLLDYKKEVDKLVSSLQSFEITHVPREKNSVADK 121
Query: 194 QAN 196
AN
Sbjct: 122 LAN 124
>gi|118380541|ref|XP_001023434.1| RNase H family protein [Tetrahymena thermophila]
gi|89305201|gb|EAS03189.1| RNase H family protein [Tetrahymena thermophila SB210]
Length = 288
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L FDGASK NPG +G G + D + Y+ G TNN AEY AL+ GLK +L G
Sbjct: 144 LFFDGASKNNPGPSGIGFAIFDNDQKL-YQQAIHTGFKTNNQAEYLALLYGLKSSLSLGI 202
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ + V GDS+L+ Q+ L+++ ++NL E K+L+ +F+ +I R NS AD+
Sbjct: 203 EFLNVYGDSQLIINQMNNLYRVKDRNLILYNGECKQLRTQFKHVNFKYIPREQNSLADSL 262
Query: 195 ANMGIYL 201
AN G+ L
Sbjct: 263 ANKGVTL 269
>gi|352681730|ref|YP_004892254.1| ribonuclease HI [Thermoproteus tenax Kra 1]
gi|350274529|emb|CCC81174.1| ribonuclease HI [Thermoproteus tenax Kra 1]
Length = 193
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 73 CTLEFDGASKG-NPGQAGA-GAVLRAEDGSVVYRLREGVGIA------TNNVAEYRALIL 124
CT+ FDGA + NPG G G V+ E+G V R G G+A TNNVAEY AL
Sbjct: 3 CTIYFDGACEPVNPGGLGTYGFVIYGENGKRVAR---GYGVACSGSSCTNNVAEYTALRE 59
Query: 125 GLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
LK AL+ G + V+GDS+LV QI+G W +N+ L L E +EL KF S++I +
Sbjct: 60 ALKRALELGCSQVVVKGDSQLVVKQIRGEWGVNSSRLLALRDEVEELLGKFDSWEIQWVP 119
Query: 185 RNLNSEADAQANMGIYL 201
R N EAD + + L
Sbjct: 120 REENREADGLSQIAYEL 136
>gi|257052283|ref|YP_003130116.1| ribonuclease H [Halorhabdus utahensis DSM 12940]
gi|256691046|gb|ACV11383.1| ribonuclease H [Halorhabdus utahensis DSM 12940]
Length = 198
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 67/119 (56%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG A G V+ DG +V + +G TNN AEY ALI L+ A G+ +
Sbjct: 74 DGASRGNPGPAAIGWVILTGDGGIVTEGGKRIGSTTNNRAEYEALIHALEIAADYGFDSV 133
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
V+ DS+L Q++G W N+ +L +EL +F + I H+ R +N ADA AN
Sbjct: 134 EVRSDSELAVRQVRGEWDTNDPDLRERRVRVRELFREFDDWSIEHVPREINERADALAN 192
>gi|118370087|ref|XP_001018246.1| RNase H family protein [Tetrahymena thermophila]
gi|89300013|gb|EAR98001.1| RNase H family protein [Tetrahymena thermophila SB210]
Length = 726
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 69 NCYS-CTLEFDGASKGNPGQAGAGAVLR---AEDGSVVYRLREGVGIATNNVAEYRALIL 124
N YS C LEFDG SKGNPG++GAG +++ E+ + Y + VG T N +EY ALI
Sbjct: 593 NFYSQCQLEFDGTSKGNPGRSGAGFIIKDLYTENKLLEYSVE--VGTKTINQSEYLALIY 650
Query: 125 GLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
G+ + G K + +QGDS++V + G+++ +Q L AK L E F +
Sbjct: 651 GMYTCYKLGIKQLTIQGDSEVVIKHMLGVYQCRSQQLREYYNLAKILDELFHFKDYVQVK 710
Query: 185 RNLNSEADAQANMGI 199
+ LN+EADA AN+ +
Sbjct: 711 KELNTEADALANLAL 725
>gi|375293529|ref|YP_005128068.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae INCA 402]
gi|371583200|gb|AEX46866.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae INCA 402]
Length = 377
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 5/125 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE---GVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG+G ++ D S V L+E VG ATNNVAEY L+ GL+ A +
Sbjct: 5 IEADGGSRGNPGIAGSGTLIYNADRSQV--LKEYSYVVGKATNNVAEYHGLLNGLRGAAE 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS A
Sbjct: 63 LGATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENSHA 122
Query: 192 DAQAN 196
DA AN
Sbjct: 123 DALAN 127
>gi|456861162|gb|EMF79867.1| ribonuclease HI [Leptospira weilii serovar Topaz str. LT2116]
Length = 129
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG + G V D +R+ E +G ATNNVAE+ +L GL+ +++ + I
Sbjct: 7 DGASKGNPGPSSIGIVAYKGDKEE-FRISERIGEATNNVAEWASLKKGLEECIRRKFDTI 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 66 HAYMDSELVVRQVSGKYKVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 124
>gi|376254768|ref|YP_005143227.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae PW8]
gi|372117852|gb|AEX70322.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae PW8]
Length = 377
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE---GVGIATNNVAEYRALILGLKYA 129
+E DG S+GNPG AG+G ++ D S V L+E VG ATNNVAEY L+ GL+ A
Sbjct: 3 VIIEADGGSRGNPGIAGSGTLIYNADRSQV--LKEYSYVVGKATNNVAEYHGLLNGLRGA 60
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
+ G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS
Sbjct: 61 AELGATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENS 120
Query: 190 EADAQAN 196
ADA AN
Sbjct: 121 HADALAN 127
>gi|307104154|gb|EFN52409.1| hypothetical protein CHLNCDRAFT_13162, partial [Chlorella
variabilis]
Length = 125
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-TNNVAEYRALILGLKYALQKGYK 135
FDGASK NPG AG GAVL ++ + V R+ + +G TNN AEY LI GL+ AL+ G +
Sbjct: 1 FDGASKRNPGPAGWGAVLY-DEATGVSRMCQYMGDQHTNNQAEYAGLIAGLQAALELGCR 59
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 195
I QGD L+ + G W++ N+ L A L +F SFQ + R LN ADA +
Sbjct: 60 RIPGQGDRTLIIPAVLGDWQVKNEGLRPYHAAATALMHRFASFQARQVRRELNQAADALS 119
Query: 196 NMGI 199
N I
Sbjct: 120 NQAI 123
>gi|375291330|ref|YP_005125870.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae 241]
gi|376246167|ref|YP_005136406.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae HC01]
gi|376288171|ref|YP_005160737.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae BH8]
gi|371581001|gb|AEX44668.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae 241]
gi|371585505|gb|AEX49170.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae BH8]
gi|372108797|gb|AEX74858.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae HC01]
Length = 377
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE---GVGIATNNVAEYRALILGLKYA 129
+E DG S+GNPG AG+G ++ D S V L+E VG ATNNVAEY L+ GL+ A
Sbjct: 3 VIIEADGGSRGNPGIAGSGTLIYNADRSQV--LKEYSYVVGKATNNVAEYHGLLNGLRGA 60
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
+ G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS
Sbjct: 61 AELGATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENS 120
Query: 190 EADAQAN 196
ADA AN
Sbjct: 121 HADALAN 127
>gi|38234249|ref|NP_940016.1| bifunctional RNase H/acid phosphatase [Corynebacterium diphtheriae
NCTC 13129]
gi|376293655|ref|YP_005165329.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae HC02]
gi|38200511|emb|CAE50207.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
gi|372110978|gb|AEX77038.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae HC02]
Length = 377
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE---GVGIATNNVAEYRALILGLKYA 129
+E DG S+GNPG AG+G ++ D S V L+E VG ATNNVAEY L+ GL+ A
Sbjct: 3 VIIEADGGSRGNPGIAGSGTLIYNADRSQV--LKEYSYVVGKATNNVAEYHGLLNGLRGA 60
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
+ G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS
Sbjct: 61 AELGATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENS 120
Query: 190 EADAQAN 196
ADA AN
Sbjct: 121 HADALAN 127
>gi|166368039|ref|YP_001660312.1| ribonuclease H like [Microcystis aeruginosa NIES-843]
gi|166090412|dbj|BAG05120.1| ribonuclease H like [Microcystis aeruginosa NIES-843]
Length = 279
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L FDG S+GNPG+A AV+ +G+ + R + ATNN AEY LI+GL+ A +
Sbjct: 11 SAILYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRY-MERATNNEAEYTGLIIGLEKAQE 69
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R+ NS A
Sbjct: 70 LGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWRWIERSKNSLA 129
Query: 192 DAQAN 196
DA AN
Sbjct: 130 DAAAN 134
>gi|358445660|ref|ZP_09156257.1| putative bifunctional RNase H/acid phosphatase [Corynebacterium
casei UCMA 3821]
gi|356608441|emb|CCE54528.1| putative bifunctional RNase H/acid phosphatase [Corynebacterium
casei UCMA 3821]
Length = 391
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI----ATNNVAEYRALILGLKYALQKG 133
DG S+GNPG AG+G V+ A DG + L E V + +TNNVAEY L+ G++ A + G
Sbjct: 8 DGGSRGNPGTAGSGTVIYAADGKTI--LDEIVYVVGKKSTNNVAEYYGLLRGVERAAELG 65
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ DSKLV QI G WKI + ++ L EA++ + F SF ++ + R NS AD
Sbjct: 66 ATEVEFFMDSKLVVEQINGRWKIKHPDMQKLAVEARKYIDTFDSFSLSWVARAKNSVADK 125
Query: 194 QAN 196
+N
Sbjct: 126 LSN 128
>gi|425464734|ref|ZP_18844044.1| Ribonuclease H like [Microcystis aeruginosa PCC 9809]
gi|389833173|emb|CCI22543.1| Ribonuclease H like [Microcystis aeruginosa PCC 9809]
Length = 279
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L FDG S+GNPG+A AV+ +G+ + R + ATNN AEY LI+GL+ A +
Sbjct: 11 SAILYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRY-MERATNNEAEYTGLIIGLEKAQE 69
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R+ NS A
Sbjct: 70 LGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWRWIERSKNSLA 129
Query: 192 DAQAN 196
DA AN
Sbjct: 130 DAAAN 134
>gi|359685859|ref|ZP_09255860.1| ribonuclease HI [Leptospira santarosai str. 2000030832]
gi|410450525|ref|ZP_11304562.1| ribonuclease HI [Leptospira sp. Fiocruz LV3954]
gi|418744997|ref|ZP_13301339.1| ribonuclease HI [Leptospira santarosai str. CBC379]
gi|418755779|ref|ZP_13311975.1| ribonuclease HI [Leptospira santarosai str. MOR084]
gi|421113370|ref|ZP_15573814.1| ribonuclease HI [Leptospira santarosai str. JET]
gi|422004282|ref|ZP_16351503.1| ribonuclease HI [Leptospira santarosai serovar Shermani str. LT
821]
gi|409963984|gb|EKO31884.1| ribonuclease HI [Leptospira santarosai str. MOR084]
gi|410015611|gb|EKO77706.1| ribonuclease HI [Leptospira sp. Fiocruz LV3954]
gi|410794000|gb|EKR91913.1| ribonuclease HI [Leptospira santarosai str. CBC379]
gi|410801144|gb|EKS07318.1| ribonuclease HI [Leptospira santarosai str. JET]
gi|417257082|gb|EKT86489.1| ribonuclease HI [Leptospira santarosai serovar Shermani str. LT
821]
gi|456874098|gb|EMF89423.1| ribonuclease HI [Leptospira santarosai str. ST188]
Length = 129
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG + G V D +R+ E +G TNNVAE+ +L GL+ +++ ++ +
Sbjct: 7 DGASKGNPGPSSIGIVAYQGDKEE-FRISERIGETTNNVAEWTSLKKGLEECVRRKFESV 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
V DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 66 HVYMDSELVVRQVIGKYKVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 124
>gi|418719322|ref|ZP_13278522.1| ribonuclease HI [Leptospira borgpetersenii str. UI 09149]
gi|410744475|gb|EKQ93216.1| ribonuclease HI [Leptospira borgpetersenii str. UI 09149]
Length = 129
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG + G V D +R+ E +G TNNVAE+ +L GL+ +++ + I
Sbjct: 7 DGASKGNPGPSSIGVVAYKGDKEE-FRISERIGETTNNVAEWTSLKKGLEECIRRKFDTI 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 66 HAYMDSELVVKQVSGKYKVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 124
>gi|455652133|gb|EMF30794.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
gancidicus BKS 13-15]
Length = 166
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 73/128 (57%), Gaps = 11/128 (8%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-- 131
+E DG S+GNPG AG GAV+ A G + E +G+ATNNVAEYR L+ GL+ A +
Sbjct: 6 VEADGGSRGNPGPAGYGAVVSDAATGETLAEAAEFIGVATNNVAEYRGLLAGLRAARELD 65
Query: 132 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 188
+ H+R+ DSKLV Q+ G WKI + + L EA + F Q+ + I R N
Sbjct: 66 PEARVHVRM--DSKLVVEQMSGRWKIKHPAMKPLAAEAATV---FPPGQVTYEWIPRERN 120
Query: 189 SEADAQAN 196
+ AD AN
Sbjct: 121 THADRLAN 128
>gi|398339296|ref|ZP_10523999.1| ribonuclease HI [Leptospira kirschneri serovar Bim str. 1051]
gi|418679418|ref|ZP_13240681.1| ribonuclease HI [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|418688388|ref|ZP_13249544.1| ribonuclease HI [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|418739797|ref|ZP_13296178.1| ribonuclease HI [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421088838|ref|ZP_15549657.1| ribonuclease HI [Leptospira kirschneri str. 200802841]
gi|421107412|ref|ZP_15567964.1| ribonuclease HI [Leptospira kirschneri str. H2]
gi|421131695|ref|ZP_15591874.1| ribonuclease HI [Leptospira kirschneri str. 2008720114]
gi|400320309|gb|EJO68180.1| ribonuclease HI [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|410002440|gb|EKO52958.1| ribonuclease HI [Leptospira kirschneri str. 200802841]
gi|410007428|gb|EKO61138.1| ribonuclease HI [Leptospira kirschneri str. H2]
gi|410356860|gb|EKP04156.1| ribonuclease HI [Leptospira kirschneri str. 2008720114]
gi|410737245|gb|EKQ81987.1| ribonuclease HI [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|410752919|gb|EKR09891.1| ribonuclease HI [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 129
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ DGASKGNPG + G V + +++ E +G TNNVAE+ AL G++ + +
Sbjct: 3 TIFCDGASKGNPGPSSIGVVAYVHEKEE-FKISERIGETTNNVAEWSALKRGIEECISRK 61
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ I DS+LV Q+ G +K+ + NL KE +L QSFQI H+ R NS AD
Sbjct: 62 FDSIHAYMDSELVVKQVNGKYKVKHPNLLEYKKEVDKLISSLQSFQITHVPREKNSVADK 121
Query: 194 QAN 196
AN
Sbjct: 122 LAN 124
>gi|294812367|ref|ZP_06771010.1| bifunctional RNase H/acid phosphatase [Streptomyces clavuligerus
ATCC 27064]
gi|326440801|ref|ZP_08215535.1| bifunctional RNase H/acid phosphatase [Streptomyces clavuligerus
ATCC 27064]
gi|294324966|gb|EFG06609.1| bifunctional RNase H/acid phosphatase [Streptomyces clavuligerus
ATCC 27064]
Length = 499
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 75/130 (57%), Gaps = 9/130 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLK--Y 128
S +E DG S+GNPG AG GAV + A G + E +G+ATNNVAEY+ L+ GLK +
Sbjct: 3 SFVVEADGGSRGNPGPAGYGAVVIDAASGETLAETAEYIGVATNNVAEYKGLVAGLKAAH 62
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRN 186
AL +RV+ DSKLV Q+ G WKI + ++ L EA + F + +++ I R
Sbjct: 63 ALDP-DAMVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAGRV---FPAASVSYEWIPRE 118
Query: 187 LNSEADAQAN 196
N AD AN
Sbjct: 119 RNKHADRLAN 128
>gi|302534166|ref|ZP_07286508.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. C]
gi|302443061|gb|EFL14877.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. C]
Length = 180
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV L G + E +G+ATNNVAEY+ LI GLK A +
Sbjct: 6 VEADGGSRGNPGPAGYGAVVLDPATGETLAERAEFIGVATNNVAEYKGLIAGLKAAAELA 65
Query: 134 YKH-IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+RV+ DSKLV Q+ G WKI + ++ L EA ++ + Q I R N AD
Sbjct: 66 PDAVVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAAKILPRGQ-VTYEWIPRERNKHAD 124
Query: 193 AQAN 196
AN
Sbjct: 125 RLAN 128
>gi|311741456|ref|ZP_07715280.1| phosphoglycerate mutase [Corynebacterium pseudogenitalium ATCC
33035]
gi|311303626|gb|EFQ79705.1| phosphoglycerate mutase [Corynebacterium pseudogenitalium ATCC
33035]
Length = 376
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI----ATNNVAEYRALILGLKYALQKG 133
DG S+GNPG AG+G V+ DGS LRE V + +TNNVAEY L+ GL+ A + G
Sbjct: 8 DGGSRGNPGVAGSGTVIY--DGSGQRILREIVYVVGTKSTNNVAEYNGLLRGLEAATEMG 65
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ DSKLV QI G WKI + ++ L A+E F SF ++ + R N ADA
Sbjct: 66 ATEVEFHMDSKLVVEQINGRWKIKHPDMQKLALRAREYINGFSSFSLDWVPRAKNKVADA 125
Query: 194 QAN 196
+N
Sbjct: 126 LSN 128
>gi|406956500|gb|EKD84584.1| ribonuclease H [uncultured bacterium]
Length = 135
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG A G + EDG +++ + +GIATNNVAEY A++ LKY +K K +
Sbjct: 8 DGASRGNPGHASYGFTISNEDGKLLHESGKYIGIATNNVAEYMAVLEALKYVKEKYSKDL 67
Query: 138 R---VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
R + DSKLV Q+ G +K+ + +L L K L + H+ R N+EAD
Sbjct: 68 RSIELFADSKLVAEQLSGRYKVKSAHLKPLIGSIKILVLELGGVLFTHVPRAKNAEADRL 127
Query: 195 ANMGI 199
AN+ +
Sbjct: 128 ANLAL 132
>gi|255324866|ref|ZP_05365975.1| phosphoglycerate mutase [Corynebacterium tuberculostearicum SK141]
gi|255298043|gb|EET77351.1| phosphoglycerate mutase [Corynebacterium tuberculostearicum SK141]
Length = 376
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI----ATNNVAEYRALILGLKYALQKG 133
DG S+GNPG AG+G V+ DGS LRE V + +TNNVAEY L+ GL+ A + G
Sbjct: 8 DGGSRGNPGVAGSGTVIY--DGSGQRILREIVYVVGTKSTNNVAEYNGLLRGLEAATEMG 65
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ DSKLV QI G WKI + ++ L A+E F SF ++ + R N ADA
Sbjct: 66 ATEVEFHMDSKLVVEQINGRWKIKHPDMQKLALRAREYINGFSSFSLDWVPRAKNKVADA 125
Query: 194 QAN 196
+N
Sbjct: 126 LSN 128
>gi|317506107|ref|ZP_07963932.1| phosphoglycerate mutase [Segniliparus rugosus ATCC BAA-974]
gi|316255606|gb|EFV14851.1| phosphoglycerate mutase [Segniliparus rugosus ATCC BAA-974]
Length = 371
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGS---VVYRLREGVGIATNNVAEYRALILGLKYA 129
+E DG S+GNPG A GAV+ +GS V+ + E +G ATNNVAEYR L+ GL+ A
Sbjct: 3 VVVEADGGSRGNPGPAAYGAVVLDSEGSGARVLAQRAERIGRATNNVAEYRGLVAGLEAA 62
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
+ G + + V+ DSKLV Q+ G WKI ++++ L A L F + R N
Sbjct: 63 KELGARRVAVRMDSKLVVEQMSGRWKIKHEDMRELASRAAALARGFDEVSYTWVPREQNK 122
Query: 190 EADAQANMGIYLKDGQVEAECSSFTK 215
ADA N + K+ +AE + K
Sbjct: 123 RADALLNAALDGKEVAGKAEAAEPPK 148
>gi|443293202|ref|ZP_21032296.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Micromonospora lupini str. Lupac 08]
gi|385883060|emb|CCH20447.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Micromonospora lupini str. Lupac 08]
Length = 387
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R +E G V+ E +G ATNNVAEY+ LI GL+ A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVRDSETGEVLAERSESLGTATNNVAEYQGLIAGLRAAAE 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
G + V+ DSKLV Q+ G W+I + L L +A L +F + + I R+ N
Sbjct: 66 VGAAEVDVRMDSKLVVEQMCGRWQIKHPGLRPLAAQAATLVGRFGAVRFTWIPRDQN 122
>gi|448419737|ref|ZP_21580581.1| ribonuclease H [Halosarcina pallida JCM 14848]
gi|445674651|gb|ELZ27188.1| ribonuclease H [Halosarcina pallida JCM 14848]
Length = 197
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G + DG +V E +G TNN AEY ALI GL+ A + G++
Sbjct: 73 FDGASRGNPGPAAVGWAIVNSDG-IVGEGSETIGETTNNRAEYEALIRGLEAAAEFGFEE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + NN L +EL E+F + + H+ R +N AD+ AN
Sbjct: 132 VDVRGDSELIVKQVRGEYDANNPELRERRVRVRELLERFDRWTLEHVPREINDRADSLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|425440628|ref|ZP_18820926.1| Ribonuclease H like [Microcystis aeruginosa PCC 9717]
gi|389718917|emb|CCH97212.1| Ribonuclease H like [Microcystis aeruginosa PCC 9717]
Length = 279
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L FDG S+GNPG+A AV+ +G+ + R + ATNN AEY LI+GL+ A +
Sbjct: 11 SAILYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRY-MERATNNEAEYTGLIIGLEKAQE 69
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS A
Sbjct: 70 LGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWRWIERAKNSLA 129
Query: 192 DAQAN 196
DA AN
Sbjct: 130 DAAAN 134
>gi|418696118|ref|ZP_13257127.1| ribonuclease HI [Leptospira kirschneri str. H1]
gi|409955647|gb|EKO14579.1| ribonuclease HI [Leptospira kirschneri str. H1]
Length = 129
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ DGASKGNPG + G V + +++ E +G TNNVAE+ AL G++ + +
Sbjct: 3 TIFCDGASKGNPGPSSIGVVAYVHEKEE-FKISERIGETTNNVAEWSALKRGIEECISRK 61
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ I DS+L+ Q+ G +K+ + NL KE +L QSFQI H+ R NS AD
Sbjct: 62 FDSIHAYMDSELIVKQVNGKYKVKHPNLLEYKKEVDKLISSLQSFQITHVPREKNSVADK 121
Query: 194 QAN 196
AN
Sbjct: 122 LAN 124
>gi|421122103|ref|ZP_15582389.1| ribonuclease HI [Leptospira interrogans str. Brem 329]
gi|410344870|gb|EKO96013.1| ribonuclease HI [Leptospira interrogans str. Brem 329]
Length = 146
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 71 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL 130
+ T+ DGASKGNPG + G V + +R+ E +G TNNVAE+ AL G++ +
Sbjct: 17 FLITIYCDGASKGNPGPSSIGIVAYIHEKEE-FRISERIGETTNNVAEWSALKKGIEECI 75
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ + I DS+LV Q+ G +K+ + NL KE +L SFQI H+ R NS
Sbjct: 76 SRKFDSIHAYMDSELVVKQVNGKYKVKHPNLLEYKKEVDKLISSLHSFQITHVPREKNSV 135
Query: 191 ADAQAN 196
AD AN
Sbjct: 136 ADKLAN 141
>gi|116328421|ref|YP_798141.1| ribonuclease HI [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116331150|ref|YP_800868.1| ribonuclease HI [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|116121165|gb|ABJ79208.1| Ribonuclease HI [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116124839|gb|ABJ76110.1| Ribonuclease HI [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
Length = 129
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG + G V D +R+ E +G TNNVAE+ +L GL+ +++ + I
Sbjct: 7 DGASKGNPGPSSIGVVAYKGDKEE-FRISERIGETTNNVAEWASLKKGLEECIRRKFDTI 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 66 HAYMDSELVVKQVSGKYKVKHPNLLEYKKEVDKLLSSLQNFQITHVPREKNSVADKLAN 124
>gi|418738770|ref|ZP_13295163.1| ribonuclease HI [Leptospira borgpetersenii serovar Castellonis str.
200801910]
gi|421094378|ref|ZP_15555096.1| ribonuclease HI [Leptospira borgpetersenii str. 200801926]
gi|410362800|gb|EKP13835.1| ribonuclease HI [Leptospira borgpetersenii str. 200801926]
gi|410745468|gb|EKQ98378.1| ribonuclease HI [Leptospira borgpetersenii serovar Castellonis str.
200801910]
gi|456887975|gb|EMF98983.1| ribonuclease HI [Leptospira borgpetersenii str. 200701203]
Length = 129
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG + G V D +R+ E +G TNNVAE+ +L GL+ +++ + I
Sbjct: 7 DGASKGNPGPSSIGVVAYKGDKEE-FRISERIGETTNNVAEWTSLKKGLEECIRRKFDTI 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
DS+LV Q+ G +++ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 66 HAYMDSELVVKQVSGKYRVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 124
>gi|448337168|ref|ZP_21526250.1| ribonuclease H [Natrinema pallidum DSM 3751]
gi|445626514|gb|ELY79857.1| ribonuclease H [Natrinema pallidum DSM 3751]
Length = 197
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG A G V+ DG +V E +G ATNN AEY ALI GL+ A Y
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDG-IVAEGGETIGTATNNQAEYEALITGLEAARDYDYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + N+ +L EL F + + ++ R +N AD N
Sbjct: 132 VHVRGDSELIVKQVRGEYDTNDPDLREKRVTVHELLRGFDEWTLEYVPREVNDRADGLVN 191
>gi|455791964|gb|EMF43749.1| ribonuclease HI [Leptospira interrogans serovar Lora str. TE 1992]
Length = 167
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 71 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL 130
+ T+ DGASKGNPG + G V + +R+ E +G TNNVAE+ AL G++ +
Sbjct: 38 FLITIYCDGASKGNPGPSSIGIVAYIHEKEE-FRISERIGETTNNVAEWSALKKGIEECI 96
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ + I DS+LV Q+ G +K+ + NL KE +L SFQI H+ R NS
Sbjct: 97 SRKFDSIHAYMDSELVVKQVNGKYKVKHPNLLEYKKEVDKLISSLHSFQITHVPREKNSV 156
Query: 191 ADAQAN 196
AD AN
Sbjct: 157 ADKLAN 162
>gi|52549819|gb|AAU83668.1| conserved hypothetical protein [uncultured archaeon GZfos32E7]
Length = 173
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA +GNPG AG G V+ E G + +E +G ATNN+AEYRALI L+ A +
Sbjct: 23 DGACRGNPGPAGIGIVICNESGKKIKEDKEFIGDATNNIAEYRALIKALELASDFSVTRV 82
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR--NLNSEADAQA 195
DS+L+ Q+ G +++ ++ L L + KE + F+ +H+ R NL AD+ A
Sbjct: 83 ECFSDSELMVRQLNGAYRVKDEKLGELFLQVKEKERLFEEVTYSHVPRKNNLIKRADSLA 142
Query: 196 NMGI 199
N+GI
Sbjct: 143 NLGI 146
>gi|390437718|ref|ZP_10226247.1| Ribonuclease H like [Microcystis sp. T1-4]
gi|389838916|emb|CCI30371.1| Ribonuclease H like [Microcystis sp. T1-4]
Length = 279
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L FDG S+GNPG+A AV+ +G+ + R + ATNN AEY LI+GL+ A +
Sbjct: 11 SAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRY-MERATNNEAEYTGLIIGLEKAQE 69
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS A
Sbjct: 70 LGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVAQFDRISWRWIERAKNSLA 129
Query: 192 DAQAN 196
DA AN
Sbjct: 130 DAAAN 134
>gi|440756017|ref|ZP_20935218.1| RNase H family protein [Microcystis aeruginosa TAIHU98]
gi|440173239|gb|ELP52697.1| RNase H family protein [Microcystis aeruginosa TAIHU98]
Length = 283
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L FDG S+GNPG+A AV+ +G+ + R + ATNN AEY LI+GL+ A +
Sbjct: 15 SAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTSRY-MERATNNEAEYTGLIIGLEKAQE 73
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS A
Sbjct: 74 LGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVTQFDRISWRWIERAKNSVA 133
Query: 192 DAQAN 196
DA AN
Sbjct: 134 DAAAN 138
>gi|227833568|ref|YP_002835275.1| Ribonuclease HI [Corynebacterium aurimucosum ATCC 700975]
gi|262184559|ref|ZP_06043980.1| Ribonuclease HI [Corynebacterium aurimucosum ATCC 700975]
gi|227454584|gb|ACP33337.1| Ribonuclease HI [Corynebacterium aurimucosum ATCC 700975]
Length = 389
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG-IATNNVAEYRALILGLKYALQKGYK 135
DG S+GNPG AG+G + ED S + R + VG +TNNVAEY L+ GL+ A++ G
Sbjct: 8 DGGSRGNPGIAGSGTAVYNEDRSQLLREIAYVVGQKSTNNVAEYHGLLRGLEAAVELGAD 67
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 195
+ DSKLV Q+ G WKI + ++ L EA+ L ++ SF + + R NS ADA +
Sbjct: 68 EVEFYMDSKLVVEQMNGRWKIKHPDMQKLAIEARRLLDQIPSFSLEWVPRAKNSVADALS 127
Query: 196 NMGI 199
N+ +
Sbjct: 128 NVAM 131
>gi|425437469|ref|ZP_18817884.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
9432]
gi|389677547|emb|CCH93523.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
9432]
Length = 279
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L FDG S+GNPG+A AV+ +G+ + R + ATNN AEY LI+GL+ A +
Sbjct: 11 SAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTSRY-MERATNNEAEYTGLIIGLEKAQE 69
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS A
Sbjct: 70 LGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVTQFDRISWRWIERAKNSVA 129
Query: 192 DAQAN 196
DA AN
Sbjct: 130 DAAAN 134
>gi|297194680|ref|ZP_06912078.1| bifunctional RNase H/acid phosphatase [Streptomyces
pristinaespiralis ATCC 25486]
gi|297152391|gb|EFH31713.1| bifunctional RNase H/acid phosphatase [Streptomyces
pristinaespiralis ATCC 25486]
Length = 423
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 74 TLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLK--YAL 130
+E DG S+GNPG AG GAV L G + E +G+ATNNVAEY+ L+ GLK +AL
Sbjct: 8 VVEADGGSRGNPGPAGYGAVVLDPVSGETLAEAAEYIGVATNNVAEYKGLVAGLKAAHAL 67
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 188
+RV+ DSKLV Q+ G WKI + ++ L EA + F Q+ + I R N
Sbjct: 68 DP-EALVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAARV---FPPAQVTYEWIPRERN 123
Query: 189 SEADAQAN 196
AD AN
Sbjct: 124 KHADRLAN 131
>gi|24214672|ref|NP_712153.1| ribonuclease H I [Leptospira interrogans serovar Lai str. 56601]
gi|386074057|ref|YP_005988374.1| ribonuclease H I [Leptospira interrogans serovar Lai str. IPAV]
gi|417760932|ref|ZP_12408946.1| ribonuclease HI [Leptospira interrogans str. 2002000624]
gi|417764207|ref|ZP_12412178.1| ribonuclease HI [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|417769659|ref|ZP_12417574.1| ribonuclease HI [Leptospira interrogans serovar Pomona str. Pomona]
gi|417775522|ref|ZP_12423375.1| ribonuclease HI [Leptospira interrogans str. 2002000621]
gi|417783304|ref|ZP_12431024.1| ribonuclease HI [Leptospira interrogans str. C10069]
gi|418668784|ref|ZP_13230184.1| ribonuclease HI [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418673711|ref|ZP_13235024.1| ribonuclease HI [Leptospira interrogans str. 2002000623]
gi|418682977|ref|ZP_13244190.1| ribonuclease HI [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418692605|ref|ZP_13253683.1| ribonuclease HI [Leptospira interrogans str. FPW2026]
gi|418700108|ref|ZP_13261052.1| ribonuclease HI [Leptospira interrogans serovar Bataviae str.
L1111]
gi|418704365|ref|ZP_13265243.1| ribonuclease HI [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418710916|ref|ZP_13271682.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
UI 08368]
gi|418712242|ref|ZP_13272986.1| ribonuclease HI [Leptospira interrogans str. UI 08452]
gi|418726639|ref|ZP_13285250.1| ribonuclease HI [Leptospira interrogans str. UI 12621]
gi|418733546|ref|ZP_13290670.1| ribonuclease HI [Leptospira interrogans str. UI 12758]
gi|421085566|ref|ZP_15546417.1| ribonuclease HI [Leptospira santarosai str. HAI1594]
gi|421102664|ref|ZP_15563268.1| ribonuclease HI [Leptospira interrogans serovar Icterohaemorrhagiae
str. Verdun LP]
gi|421118893|ref|ZP_15579225.1| ribonuclease HI [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421125374|ref|ZP_15585627.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|421137310|ref|ZP_15597397.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
Andaman]
gi|24195657|gb|AAN49171.1| ribonuclease H I [Leptospira interrogans serovar Lai str. 56601]
gi|353457846|gb|AER02391.1| ribonuclease H I [Leptospira interrogans serovar Lai str. IPAV]
gi|400325536|gb|EJO77812.1| ribonuclease HI [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400353602|gb|EJP05767.1| ribonuclease HI [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|400357838|gb|EJP13958.1| ribonuclease HI [Leptospira interrogans str. FPW2026]
gi|409942926|gb|EKN88529.1| ribonuclease HI [Leptospira interrogans str. 2002000624]
gi|409948364|gb|EKN98353.1| ribonuclease HI [Leptospira interrogans serovar Pomona str. Pomona]
gi|409953433|gb|EKO07932.1| ribonuclease HI [Leptospira interrogans str. C10069]
gi|409960549|gb|EKO24303.1| ribonuclease HI [Leptospira interrogans str. UI 12621]
gi|410009599|gb|EKO67758.1| ribonuclease HI [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410018524|gb|EKO85362.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
Andaman]
gi|410367778|gb|EKP23162.1| ribonuclease HI [Leptospira interrogans serovar Icterohaemorrhagiae
str. Verdun LP]
gi|410431131|gb|EKP75491.1| ribonuclease HI [Leptospira santarosai str. HAI1594]
gi|410437281|gb|EKP86384.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|410574847|gb|EKQ37876.1| ribonuclease HI [Leptospira interrogans str. 2002000621]
gi|410579372|gb|EKQ47220.1| ribonuclease HI [Leptospira interrogans str. 2002000623]
gi|410755516|gb|EKR17146.1| ribonuclease HI [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410760792|gb|EKR26986.1| ribonuclease HI [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410766098|gb|EKR36787.1| ribonuclease HI [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410768516|gb|EKR43763.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
UI 08368]
gi|410773155|gb|EKR53186.1| ribonuclease HI [Leptospira interrogans str. UI 12758]
gi|410791344|gb|EKR85021.1| ribonuclease HI [Leptospira interrogans str. UI 08452]
gi|455666123|gb|EMF31585.1| ribonuclease HI [Leptospira interrogans serovar Pomona str. Fox
32256]
gi|456821826|gb|EMF70332.1| ribonuclease HI [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456983418|gb|EMG19736.1| ribonuclease HI [Leptospira interrogans serovar Copenhageni str.
LT2050]
Length = 129
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ DGASKGNPG + G V + +R+ E +G TNNVAE+ AL G++ + +
Sbjct: 3 TIYCDGASKGNPGPSSIGIVAYIHEKEE-FRISERIGETTNNVAEWSALKKGIEECISRK 61
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ I DS+LV Q+ G +K+ + NL KE +L SFQI H+ R NS AD
Sbjct: 62 FDSIHAYMDSELVVKQVNGKYKVKHPNLLEYKKEVDKLISSLHSFQITHVPREKNSVADK 121
Query: 194 QAN 196
AN
Sbjct: 122 LAN 124
>gi|317125175|ref|YP_004099287.1| ribonuclease H [Intrasporangium calvum DSM 43043]
gi|315589263|gb|ADU48560.1| ribonuclease H [Intrasporangium calvum DSM 43043]
Length = 350
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 9/139 (6%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GA++R G+V+ L E +G+A+NNVAEY L+ GL+ A +
Sbjct: 13 LVVEADGGSRGNPGVAGYGALVRDGASGAVLIELAEPLGLASNNVAEYSGLLAGLRAAAE 72
Query: 132 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ----SFQINHILRN 186
+ V+ DSKLV Q+ G WK+ ++++ L E +E+ + + S I R
Sbjct: 73 IDSAARVHVRMDSKLVVEQMSGRWKVKHEDMRRLAGEVREVLREIEAAGGSVHFEWIPRE 132
Query: 187 LNSEADAQANMGIYLKDGQ 205
N AD +N + DGQ
Sbjct: 133 RNKAADLLSNEAM---DGQ 148
>gi|333978202|ref|YP_004516147.1| ribonuclease H [Desulfotomaculum kuznetsovii DSM 6115]
gi|333821683|gb|AEG14346.1| ribonuclease H [Desulfotomaculum kuznetsovii DSM 6115]
Length = 145
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG+A GA L E+G VV+ E VG+ T+N AEY ALI L+ ++ K
Sbjct: 18 FDGVSRGNPGEAAVGAYLVDENGEVVWEKSERVGVHTSNEAEYLALIALLEEVARRDIKE 77
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I V GDS+LV Q+ G W IN+ +L L + A L + + ++ + R N AD AN
Sbjct: 78 ITVYGDSQLVINQVNGHWNINHAHLYELYRRADRLM-RGRKVRLVWVPREKNMRADKLAN 136
>gi|398786385|ref|ZP_10549126.1| phosphoglycerate mutase [Streptomyces auratus AGR0001]
gi|396993686|gb|EJJ04747.1| phosphoglycerate mutase [Streptomyces auratus AGR0001]
Length = 393
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 75/130 (57%), Gaps = 9/130 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLK--Y 128
+ +E DG S+GNPG AG GAV L E G + E +G ATNNVAEY+ L+ GL+ +
Sbjct: 4 TLIVEADGGSRGNPGPAGYGAVVLDPETGEALAEAAEFLGTATNNVAEYKGLVAGLRAAH 63
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRN 186
AL IRV+ DSKLV Q+ G WKI + ++ L EA+ + F ++++ I R
Sbjct: 64 ALDP-EADIRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEARSV---FPPDRVSYEWIPRA 119
Query: 187 LNSEADAQAN 196
N AD AN
Sbjct: 120 QNKHADRLAN 129
>gi|448733009|ref|ZP_21715255.1| ribonuclease H [Halococcus salifodinae DSM 8989]
gi|445803342|gb|EMA53639.1| ribonuclease H [Halococcus salifodinae DSM 8989]
Length = 197
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKY 128
+CY FDGAS+GNPG A G V+ +G +V E + TNN AEY AL+ L+
Sbjct: 70 HCY-----FDGASRGNPGPAAIGWVIVTSEG-IVDEGGERIDDTTNNRAEYEALLRVLEV 123
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A + ++ + V+GDS+LV Q++G W N L +EL + F + I H+ R N
Sbjct: 124 AREYDFETVDVRGDSQLVVEQVRGAWDTNEPALRERRIRVRELLDGFDEWSIEHVPREAN 183
Query: 189 SEADAQAN 196
AD +AN
Sbjct: 184 DRADERAN 191
>gi|374990380|ref|YP_004965875.1| bifunctional RNase H/acid phosphatase [Streptomyces bingchenggensis
BCW-1]
gi|297161032|gb|ADI10744.1| bifunctional RNase H/acid phosphatase [Streptomyces bingchenggensis
BCW-1]
Length = 421
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL--- 130
+E DG S+GNPG AG GAV L + G + E +G ATNNVAEY+ LI GL+ A
Sbjct: 7 VEADGGSRGNPGPAGYGAVVLDPDTGETLAEAAEYIGTATNNVAEYKGLIAGLRAARALD 66
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 188
+ ++V+ DSKLV Q+ G WK+ + + L EA+E+ F Q+++ I R N
Sbjct: 67 PEAGVQVQVRMDSKLVVEQMSGRWKVKHPGMRPLAAEAREI---FPPGQVSYEWIPRERN 123
Query: 189 SEADAQAN 196
AD AN
Sbjct: 124 KHADRLAN 131
>gi|357413710|ref|YP_004925446.1| phosphoglycerate mutase [Streptomyces flavogriseus ATCC 33331]
gi|320011079|gb|ADW05929.1| Phosphoglycerate mutase [Streptomyces flavogriseus ATCC 33331]
Length = 429
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 73 CTLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV L D + + E +G+ATNNVAEYR LI GLK A++
Sbjct: 7 LVVEADGGSRGNPGPAGYGAVVLDPLDTATLAEAAEYIGVATNNVAEYRGLIAGLK-AVR 65
Query: 132 KGYK----HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
+ +RV+ DSKLV Q+ G WKI + ++ L +EA + S I R
Sbjct: 66 DLFPDTPVQVRVRMDSKLVVEQMSGRWKIKHPDMKPLAEEAARILPA-SSVTYEWIPRAE 124
Query: 188 NSEADAQAN 196
N AD AN
Sbjct: 125 NKHADRLAN 133
>gi|294102762|ref|YP_003554620.1| ribonuclease H [Aminobacterium colombiense DSM 12261]
gi|293617742|gb|ADE57896.1| ribonuclease H [Aminobacterium colombiense DSM 12261]
Length = 198
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 78/123 (63%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG+AGAGAVL E+G +V++ +G TNN AEY L+L L+ +G K
Sbjct: 6 FDGASRGNPGEAGAGAVLYNEEGHMVWQKFAYLGSQTNNEAEYGGLLLLLREIQLRGIKK 65
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I ++GDS+LV Q++ WK+N+ +L L +EA+ L + Q+ + R NS AD +N
Sbjct: 66 IVIRGDSRLVICQMKKEWKVNSPHLKELWEEAQSLLKGCQA-TFEWVPRKENSNADLLSN 124
Query: 197 MGI 199
I
Sbjct: 125 KAI 127
>gi|441158769|ref|ZP_20967447.1| bifunctional RNase H/acid phosphatase [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440617274|gb|ELQ80382.1| bifunctional RNase H/acid phosphatase [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 394
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 75/130 (57%), Gaps = 9/130 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLK--Y 128
+ +E DG S+GNPG AG GAV + E G + E +G ATNNVAEYR L+ GL+ +
Sbjct: 4 TLIVEADGGSRGNPGPAGYGAVVIDPESGQPLAEAAEYIGTATNNVAEYRGLLAGLRAAH 63
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRN 186
AL + +RV+ DSKLV Q+ G WKI + ++ L EA+ + F ++ + I R
Sbjct: 64 ALDPDAE-VRVRMDSKLVVEQMSGRWKIKHPDMRPLAAEARTV---FPPDRVTYEWIPRE 119
Query: 187 LNSEADAQAN 196
N AD AN
Sbjct: 120 QNKHADLLAN 129
>gi|305681140|ref|ZP_07403947.1| ribonuclease HI [Corynebacterium matruchotii ATCC 14266]
gi|305659345|gb|EFM48845.1| ribonuclease HI [Corynebacterium matruchotii ATCC 14266]
Length = 401
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG+G V+ DG+ V R L VG ATNNVAEY AL GL A Q G
Sbjct: 5 IEADGGSRGNPGIAGSGTVIYEADGTTVVRKLAYVVGTATNNVAEYHALYNGLCVAQQLG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
I V+ DSKLV Q+ G WKI + ++ L + +++ S + + R
Sbjct: 65 ATDISVRMDSKLVVEQMSGRWKIKHPDMRELALKCQKILRTLHSAEFTWVPR 116
>gi|225021833|ref|ZP_03711025.1| hypothetical protein CORMATOL_01864 [Corynebacterium matruchotii
ATCC 33806]
gi|224945381|gb|EEG26590.1| hypothetical protein CORMATOL_01864 [Corynebacterium matruchotii
ATCC 33806]
Length = 401
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG+G V+ DG+ V R L VG ATNNVAEY AL GL A Q G
Sbjct: 5 IEADGGSRGNPGIAGSGTVIYEADGTTVVRKLAYVVGTATNNVAEYHALYNGLCVAQQLG 64
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
I V+ DSKLV Q+ G WKI + ++ L + +++ S + + R
Sbjct: 65 ATDISVRMDSKLVVEQMSGRWKIKHPDMRELALKCQKILRTLHSAEFTWVPR 116
>gi|306836559|ref|ZP_07469529.1| phosphoglycerate mutase [Corynebacterium accolens ATCC 49726]
gi|304567583|gb|EFM43178.1| phosphoglycerate mutase [Corynebacterium accolens ATCC 49726]
Length = 398
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 74/123 (60%), Gaps = 6/123 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI----ATNNVAEYRALILGLKYALQKG 133
DG S+GNPG AG+G V+ A DG V LRE V + A+NNVAEY L+ GL+ A++ G
Sbjct: 8 DGGSRGNPGVAGSGTVVYAADGETV--LREIVYVVGKKASNNVAEYHGLLRGLEAAVELG 65
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ DS+LV Q+ G WKI + ++ L +A++L ++ ++ + RN N ADA
Sbjct: 66 ADDVDFYMDSRLVVEQMNGRWKIKHPDMKQLGVQAQKLMQQLGRVNLSWVRRNDNKVADA 125
Query: 194 QAN 196
+N
Sbjct: 126 LSN 128
>gi|448322504|ref|ZP_21511974.1| ribonuclease H [Natronococcus amylolyticus DSM 10524]
gi|445601262|gb|ELY55251.1| ribonuclease H [Natronococcus amylolyticus DSM 10524]
Length = 197
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G V+ +G +V E +G TNN AEY ALI L+ A + GY
Sbjct: 73 FDGASRGNPGPASIGWVIVTSEG-IVAEGGERIGRTTNNQAEYTALITALEAAEEYGYGE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ +GDS+L+ Q++G + NN L A EL F + + ++ R +N AD AN
Sbjct: 132 VHARGDSELIVKQVRGEYDTNNPELREQRVRALELLSSFDDWTLEYVPREVNDRADGLAN 191
>gi|91202043|emb|CAJ75103.1| similar to ribonuclease H [Candidatus Kuenenia stuttgartiensis]
Length = 197
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 76/129 (58%)
Query: 71 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL 130
++ + DGAS+GNPG+AGAG + + +V + + +G ATNNVAEY A+IL + A+
Sbjct: 65 HTLVIHTDGASRGNPGKAGAGIAIFDGNYHLVEEIGKFLGEATNNVAEYEAMILAAQKAV 124
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ + DS+L+ Q++G++++ N L L K+ L + ++I+H+ R NS
Sbjct: 125 SYYPGKVVFKTDSELLVRQVKGIYRVKNPTLISLHKKLMTLFKTLPLWEISHVPREENSL 184
Query: 191 ADAQANMGI 199
AD AN I
Sbjct: 185 ADTIANRAI 193
>gi|448613431|ref|ZP_21663311.1| ribonuclease H [Haloferax mucosum ATCC BAA-1512]
gi|445740328|gb|ELZ91834.1| ribonuclease H [Haloferax mucosum ATCC BAA-1512]
Length = 197
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G + +G +V + +G TNN AEY ALI L A + GY
Sbjct: 73 FDGASRGNPGPAAIGWAIVTNNG-IVAEGSKRIGETTNNRAEYEALIAALSAAAEYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G WK N+ L +A+EL ++F + + H+ R +N AD AN
Sbjct: 132 VDVRGDSQLIVKQVRGEWKTNDPGLRERRVKARELLDRFDRWSLEHVPREINDRADTLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|110667198|ref|YP_657009.1| ribonuclease H I [Haloquadratum walsbyi DSM 16790]
gi|109624945|emb|CAJ51357.1| ribonuclease H, type 1 [Haloquadratum walsbyi DSM 16790]
Length = 198
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGA +GNPG A G VL +G ++ E +G TNN AEY AL ++ A Q G+
Sbjct: 74 FDGACRGNPGPAAIGWVLVTNEG-IIADGGEEIGKTTNNRAEYAALERAIEMARQYGFTE 132
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I ++GDS+L+ Q+ G + N L +EL + F + I H+ R++NS AD AN
Sbjct: 133 IDIRGDSQLIIRQVTGEYDTNEPTLREYRVRVRELLQTFDRWSIEHVPRDVNSHADKLAN 192
>gi|385802604|ref|YP_005839004.1| ribonuclease H, type 1 [Haloquadratum walsbyi C23]
gi|339728096|emb|CCC39218.1| ribonuclease H, type 1 [Haloquadratum walsbyi C23]
Length = 198
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGA +GNPG A G VL +G ++ E +G TNN AEY AL ++ A Q G+
Sbjct: 74 FDGACRGNPGPAAIGWVLVTNEG-IIADGGEEIGKTTNNRAEYAALERAIEMARQYGFTE 132
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I ++GDS+L+ Q+ G + N L +EL + F + I H+ R++NS AD AN
Sbjct: 133 IDIRGDSQLIIRQVTGEYDTNEPTLREYRVRVRELLQTFDRWSIEHVPRDVNSHADKLAN 192
>gi|448737145|ref|ZP_21719197.1| ribonuclease H [Halococcus thailandensis JCM 13552]
gi|445804358|gb|EMA54615.1| ribonuclease H [Halococcus thailandensis JCM 13552]
Length = 196
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 6/128 (4%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKY 128
+CY FDGAS+GNPG A G V+ + +V E VG TNN AEY AL L+
Sbjct: 70 HCY-----FDGASRGNPGPAAIGWVI-VDSSGIVAEGGERVGETTNNRAEYDALTRVLER 123
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G+ + ++GDS+LV Q++G W+ N+ L +EL E+F + I H+ R N
Sbjct: 124 AADYGFDTVELRGDSQLVVEQVRGAWQTNDPELRERRVRVRELLERFDDWSIEHVPREAN 183
Query: 189 SEADAQAN 196
ADA+AN
Sbjct: 184 ERADARAN 191
>gi|400534113|ref|ZP_10797651.1| bifunctional RNase H/acid phosphatase [Mycobacterium colombiense
CECT 3035]
gi|400332415|gb|EJO89910.1| bifunctional RNase H/acid phosphatase [Mycobacterium colombiense
CECT 3035]
Length = 375
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ ED +V+ ++ +G ATNNVAEYR LI GL AL
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTEDRTTVLAEAKQAIGRATNNVAEYRGLIAGLDDALN 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKL+ Q+ G WK+ + +L L EA++ +F + I R N+ A
Sbjct: 63 LGATEAAVYLDSKLLVEQMSGRWKVKHPDLIELHAEARDRARRFARISYSWIPRARNTHA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>gi|269125916|ref|YP_003299286.1| phosphoglycerate mutase [Thermomonospora curvata DSM 43183]
gi|268310874|gb|ACY97248.1| Phosphoglycerate mutase [Thermomonospora curvata DSM 43183]
Length = 378
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG GA++R A G V+ + E +G ATNNVAEYR LI GL+ A +
Sbjct: 14 VEADGGSRGNPGPAGYGALVRDALTGEVLAEVAEAIGHATNNVAEYRGLIAGLRAAAEVD 73
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ V+ DSKLV Q+ G WKI + +L L +A++ + + R+ N+ AD
Sbjct: 74 PAARVEVRMDSKLVVEQMSGRWKIRHPDLMPLALQARDAAAALGAVSYTWVPRDRNAHAD 133
Query: 193 AQAN 196
AN
Sbjct: 134 RLAN 137
>gi|227503210|ref|ZP_03933259.1| bifunctional RNase H/acid phosphatase [Corynebacterium accolens
ATCC 49725]
gi|227076271|gb|EEI14234.1| bifunctional RNase H/acid phosphatase [Corynebacterium accolens
ATCC 49725]
Length = 398
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 74/123 (60%), Gaps = 6/123 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI----ATNNVAEYRALILGLKYALQKG 133
DG S+GNPG AG+G V+ A DG V LRE V + A+NNVAEY L+ GL+ A++ G
Sbjct: 8 DGGSRGNPGIAGSGTVVYAADGETV--LREIVYVVGKKASNNVAEYHGLLRGLEAAVELG 65
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ DS+LV Q+ G WKI + ++ L +A++L ++ ++ + RN N ADA
Sbjct: 66 ADDVDFYMDSRLVVEQMNGRWKIKHPDMKQLGVQAQKLMQQLGRVNLSWVRRNDNKVADA 125
Query: 194 QAN 196
+N
Sbjct: 126 LSN 128
>gi|302551031|ref|ZP_07303373.1| bifunctional RNase H/acid phosphatase [Streptomyces
viridochromogenes DSM 40736]
gi|302468649|gb|EFL31742.1| bifunctional RNase H/acid phosphatase [Streptomyces
viridochromogenes DSM 40736]
Length = 559
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 11/128 (8%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-- 131
+E DG S+GNPG AG GAV+ A G + + E +G+ATNNVAEYR L+ GL+ A +
Sbjct: 6 VEADGGSRGNPGPAGYGAVVSDAATGETLREVAEYIGVATNNVAEYRGLLAGLRAAHELD 65
Query: 132 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 188
H+R+ DSKLV Q+ G WKI + ++ L EA + F ++ + + R N
Sbjct: 66 PDATVHVRM--DSKLVIEQMSGRWKIKHPDMKPLAAEAARV---FPPGRVTYEWMPREQN 120
Query: 189 SEADAQAN 196
AD AN
Sbjct: 121 KHADRLAN 128
>gi|386386675|ref|ZP_10071794.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
tsukubaensis NRRL18488]
gi|385665871|gb|EIF89495.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
tsukubaensis NRRL18488]
Length = 167
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 72 SCTLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL 130
S +E DG S+GNPG AG GAV L G + E +G+ATNNVAEY+ LI GL+ A
Sbjct: 3 SFVVEADGGSRGNPGPAGYGAVVLDPVTGETLAEAAEYIGVATNNVAEYKGLIAGLRAAR 62
Query: 131 QKGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
+RV+ DSKLV Q+ G WKI + ++ L EA + + + I R N
Sbjct: 63 DIAPDASVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAARIFPR-SAVTYEWIPREQNK 121
Query: 190 EADAQAN 196
AD AN
Sbjct: 122 HADRLAN 128
>gi|268324318|emb|CBH37906.1| ribonuclease H [uncultured archaeon]
Length = 142
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA +GNPG AG G V+ E G ++ +E +G ATNN+AEYRALI L+ A +
Sbjct: 10 DGACRGNPGPAGIGIVICNESGEIIKEDKEFIGNATNNIAEYRALIKALELANDFSVTRV 69
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN--LNSEADAQA 195
DS+L+ Q+ G +++ N+ L L + KE + F+ +H+ R L AD A
Sbjct: 70 ECFSDSELMVRQLNGAYRVKNEKLGELFLQVKEKERLFEEVTYSHVPREKGLIKRADKLA 129
Query: 196 NMGI 199
N+GI
Sbjct: 130 NLGI 133
>gi|288924295|ref|ZP_06418314.1| Phosphoglycerate mutase [Frankia sp. EUN1f]
gi|288344357|gb|EFC78867.1| Phosphoglycerate mutase [Frankia sp. EUN1f]
Length = 378
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GA++R G V+ +G ATNNVAEY L+ GL+ A
Sbjct: 7 LVIEADGGSRGNPGPAGYGALVRDPATGEVLAERAAAIGTATNNVAEYEGLLAGLRAAAD 66
Query: 132 KGYKH-IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ V+ DSKLV Q+ G WK+ + ++ L EA L +F S + + R N++
Sbjct: 67 VAPDADLEVRMDSKLVVEQMSGRWKVKHPSMRPLVTEASGLVSRFPSVRFVWVPRARNAD 126
Query: 191 AD 192
AD
Sbjct: 127 AD 128
>gi|25028689|ref|NP_738743.1| bifunctional RNase H/acid phosphatase [Corynebacterium efficiens
YS-314]
gi|23493975|dbj|BAC18943.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 435
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVGI-ATNNVAEYRALILGLKYALQK 132
+E DG S+GNPG AG+G V+ +E+ + R + VG +TNNVAEYR LI GL+ A +
Sbjct: 49 IEADGGSRGNPGVAGSGTVVYSENRERILREIAYVVGTRSTNNVAEYRGLIEGLRVAREL 108
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + V DSKLV Q+ G WKI + ++ L EA+ L I R N AD
Sbjct: 109 GATEVEVFMDSKLVVEQMSGRWKIKHPDMKTLAMEARNLAGDIGRVTYTWIPREKNKAAD 168
Query: 193 AQANMGI 199
+N+ +
Sbjct: 169 HLSNVAM 175
>gi|301094364|ref|XP_002896288.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262109683|gb|EEY67735.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 174
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 78 DGASKGNPGQAGAGAVLRAE-DGSVVYRLREGVG-IATNNVAEYRALILGLKYALQKGYK 135
DGAS+GNPG++G GA+L G V+ + VG + TNN AEY L+L L+ A Q
Sbjct: 40 DGASRGNPGRSGCGALLMDPITGRVLATETKYVGDLETNNAAEYHGLMLALQLAQQHQAT 99
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 195
H+ V DS+L+ Q+ G +++ NL L ++ KEL +H+ R N+EAD A
Sbjct: 100 HVHVHMDSQLIVRQMMGQYRVKAANLRKLHQQCKELSAALPYVTFSHVAREENTEADRLA 159
Query: 196 NMGI 199
N I
Sbjct: 160 NEAI 163
>gi|259507750|ref|ZP_05750650.1| phosphoglycerate mutase family protein [Corynebacterium efficiens
YS-314]
gi|259164543|gb|EEW49097.1| phosphoglycerate mutase family protein [Corynebacterium efficiens
YS-314]
Length = 391
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVGI-ATNNVAEYRALILGLKYALQK 132
+E DG S+GNPG AG+G V+ +E+ + R + VG +TNNVAEYR LI GL+ A +
Sbjct: 5 IEADGGSRGNPGVAGSGTVVYSENRERILREIAYVVGTRSTNNVAEYRGLIEGLRVAREL 64
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + V DSKLV Q+ G WKI + ++ L EA+ L I R N AD
Sbjct: 65 GATEVEVFMDSKLVVEQMSGRWKIKHPDMKTLAMEARNLAGDIGRVTYTWIPREKNKAAD 124
Query: 193 AQANMGI 199
+N+ +
Sbjct: 125 HLSNVAM 131
>gi|399575426|ref|ZP_10769184.1| hypothetical protein HSB1_12230 [Halogranum salarium B-1]
gi|399239694|gb|EJN60620.1| hypothetical protein HSB1_12230 [Halogranum salarium B-1]
Length = 198
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G + DG +V E +G TNN AEY AL+ L+ A + G K
Sbjct: 74 FDGASRGNPGPAAIGWAIVTSDG-IVAEGSERIGQTTNNRAEYAALLKALEAASEYGLKE 132
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I ++GDS+LV Q++G W N+ L EA+EL F + I H+ R +N AD AN
Sbjct: 133 IDLRGDSQLVVKQVRGEWNTNDPGLREKRVEARELLTGFDRWSIAHVPREINERADTLAN 192
>gi|302391482|ref|YP_003827302.1| ribonuclease H [Acetohalobium arabaticum DSM 5501]
gi|302203559|gb|ADL12237.1| ribonuclease H [Acetohalobium arabaticum DSM 5501]
Length = 201
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG G G +++ ++ L + +G ATNN AEY+A+I GLK A + + I
Sbjct: 8 DGASRGNPGPGGIGVLIKDGSNNIKEELADYIGEATNNEAEYQAIIAGLKKARELNSESI 67
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV Q+ G +++ ++ L E KEL + HI R N +AD AN+
Sbjct: 68 SLFSDSQLVIKQLTGEYRVRSEKLKPYYLEIKELLQDLPDCDFQHIPREENHKADELANL 127
Query: 198 GI 199
GI
Sbjct: 128 GI 129
>gi|448726654|ref|ZP_21709048.1| ribonuclease H [Halococcus morrhuae DSM 1307]
gi|445793984|gb|EMA44548.1| ribonuclease H [Halococcus morrhuae DSM 1307]
Length = 196
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 6/128 (4%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKY 128
+CY FDGAS+GNPG A G V+ + +V E VG TNN AEY AL L+
Sbjct: 70 HCY-----FDGASRGNPGPAAIGWVI-VDSSGIVAEGGERVGETTNNRAEYDALTRVLER 123
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G+ + ++GDS+LV Q++G W+ N+ L +EL E+F + I H+ R N
Sbjct: 124 AADYGFDTVELRGDSQLVVEQVKGAWQTNDPALRERRVRVRELLERFDDWSIEHVPREAN 183
Query: 189 SEADAQAN 196
ADA+AN
Sbjct: 184 ERADARAN 191
>gi|425468993|ref|ZP_18847962.1| Ribonuclease H like [Microcystis aeruginosa PCC 9701]
gi|389884185|emb|CCI35486.1| Ribonuclease H like [Microcystis aeruginosa PCC 9701]
Length = 279
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S L FDG S+GNPG A AV+ +G+ + R + ATNN AEY LI+GL+ A +
Sbjct: 11 SAILYFDGGSRGNPGSAAGAAVIVLAEGNSLTTTRY-MERATNNEAEYTGLIIGLEKAQE 69
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q++G WK+ + +L + +L +F I R NS A
Sbjct: 70 LGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRTCQLVAQFDRISWRWIERAKNSVA 129
Query: 192 DAQAN 196
DA AN
Sbjct: 130 DAAAN 134
>gi|227504616|ref|ZP_03934665.1| bifunctional RNase H/acid phosphatase [Corynebacterium striatum
ATCC 6940]
gi|227198826|gb|EEI78874.1| bifunctional RNase H/acid phosphatase [Corynebacterium striatum
ATCC 6940]
Length = 391
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 78 DGASKGNPGQAGAG-AVLRAEDGSVVYRLREGVGI-ATNNVAEYRALILGLKYALQKGYK 135
DG S+GNPG AG+G AV A+ ++ + VG +TNNVAEY L+ GL+ A++ G
Sbjct: 8 DGGSRGNPGIAGSGTAVYSADRKQLLREIAYVVGTKSTNNVAEYHGLLRGLEAAVEMGAD 67
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 195
+ DSKLV Q+ G WKI + ++ L EA++L ++ SF + + R N ADA +
Sbjct: 68 DVDFYMDSKLVVEQMNGRWKIKHPDMQALALEARKLIDQIGSFTLTWVPRAKNKAADALS 127
Query: 196 NM 197
N+
Sbjct: 128 NV 129
>gi|408677713|ref|YP_006877540.1| Phosphoglycerate mutase family [Streptomyces venezuelae ATCC 10712]
gi|328882042|emb|CCA55281.1| Phosphoglycerate mutase family [Streptomyces venezuelae ATCC 10712]
Length = 499
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 11/128 (8%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYA---L 130
+E DG S+GNPG AG GAV L G + E +G+ATNNVAEY+ L+ GLK A
Sbjct: 11 VEADGGSRGNPGPAGYGAVVLDPVTGETLAEAAEYIGVATNNVAEYKGLVAGLKAARELF 70
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 188
H+R+ DSKLV Q+ G WKI + ++ L EA + F + ++ + I R N
Sbjct: 71 PDATVHVRM--DSKLVVEQMSGRWKIKHPDMKPLAAEAGRV---FPAGRVRYEWIPRERN 125
Query: 189 SEADAQAN 196
AD AN
Sbjct: 126 KHADRLAN 133
>gi|448476738|ref|ZP_21603673.1| ribonuclease H [Halorubrum aidingense JCM 13560]
gi|445815189|gb|EMA65121.1| ribonuclease H [Halorubrum aidingense JCM 13560]
Length = 198
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG G L DG +V E +G TNN AEY ALI L+ A + G+
Sbjct: 73 FDGASRGNPGPGAVGWCLVTADG-IVAEGGERIGRVTNNQAEYAALIRALEAADEYGFDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I V+GDS+L+ Q++G W N+ L +EL E+F + + H+ R +N+ AD AN
Sbjct: 132 IDVRGDSELIVKQVRGEWNANDPELRERRVRVRELLERFDRWSLGHVPREINARADDLAN 191
>gi|408532304|emb|CCK30478.1| hypothetical protein BN159_6099 [Streptomyces davawensis JCM 4913]
Length = 396
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG GAV+ A G + E +G+ TNNVAEYR L+ GL+ AL
Sbjct: 6 VEADGGSRGNPGPAGYGAVVSDAATGETLAERSEFLGVVTNNVAEYRGLLAGLRAALDLD 65
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSE 190
+ V+ DSKLV Q+ G WKI + ++ L EA + F ++ + I R N
Sbjct: 66 PTASVHVRMDSKLVVEQMSGRWKIKHPDMKPLAMEASRV---FPPERVTYEWIPREQNKH 122
Query: 191 ADAQAN 196
AD AN
Sbjct: 123 ADRLAN 128
>gi|116317798|emb|CAH65837.1| OSIGBa0124C14.4 [Oryza sativa Indica Group]
Length = 1802
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1229 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1283
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G KH+ V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1284 SLGIKHLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1343
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1344 ADRLANFG 1351
>gi|38346888|emb|CAE03913.2| OSJNBb0015G09.7 [Oryza sativa Japonica Group]
Length = 1991
Score = 84.0 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1418 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1472
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G KH+ V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1473 SLGIKHLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1532
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1533 ADRLANFG 1540
>gi|282856848|ref|ZP_06266107.1| phosphoglycerate mutase [Pyramidobacter piscolens W5455]
gi|282585358|gb|EFB90667.1| phosphoglycerate mutase [Pyramidobacter piscolens W5455]
Length = 218
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 74/126 (58%), Gaps = 8/126 (6%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 135
FDGAS+GNPG+AGAG V+ DG ++R +G+ TNN AEY AL L + ++G K
Sbjct: 6 FDGASRGNPGEAGAGMVIY--DGERAIWRRALPLGMKTNNEAEYMALSLLVDELERRGLK 63
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI--NHILRNLNSEADA 193
+ ++GDSKLV Q+ G WKI L L A + E+ ++ Q + R N+EAD
Sbjct: 64 NAEIRGDSKLVISQVTGQWKIKEPRLKAL---ADPIIERIRALQARCRWVPRAQNAEADR 120
Query: 194 QANMGI 199
+N+ +
Sbjct: 121 LSNVAL 126
>gi|406905527|gb|EKD46967.1| Ribonuclease H [uncultured bacterium]
Length = 141
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 78 DGASKGNPGQAGAGAVLRA-----EDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
DG ++GNPG +GAG V+ A ++ ++ + +G ATNN+AEY A+ILGL AL+
Sbjct: 8 DGGARGNPGPSGAGFVIYALNDQDQEAEKIFADGKYLGDATNNIAEYEAVILGLTKALEL 67
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + DS+L+ Q+ G +K+ N+ LA + L +F+ H+ R N EAD
Sbjct: 68 NASSVDLVMDSELIVKQLNGEYKVKNEGLAQKYLQVHNLLYRFERVTFRHVRREFNKEAD 127
Query: 193 AQANMGI 199
AQ N +
Sbjct: 128 AQVNKAL 134
>gi|21220768|ref|NP_626547.1| bifunctional RNase H/acid phosphatase [Streptomyces coelicolor
A3(2)]
gi|7619754|emb|CAB88177.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Streptomyces coelicolor A3(2)]
Length = 497
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 67 PYNCYSCTLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
P +E DG S+GNPG AG GAV L G + E +G+ TNNVAEYR L+ G
Sbjct: 6 PRPAREFVVEADGGSRGNPGPAGYGAVVLDPVTGEALVEAAEYLGVVTNNVAEYRGLLAG 65
Query: 126 LKYALQ---KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH 182
L+ A + H+R+ DSKLV Q+ G WKI + ++ L EA + F ++ +
Sbjct: 66 LRAAAELDPDATVHVRM--DSKLVVEQMSGRWKIKHPDMKPLAAEAARV---FPPGRVTY 120
Query: 183 --ILRNLNSEADAQAN 196
I R N AD AN
Sbjct: 121 EWIPRASNKHADRLAN 136
>gi|383807457|ref|ZP_09963017.1| ribonuclease H [Candidatus Aquiluna sp. IMCC13023]
gi|383298811|gb|EIC91426.1| ribonuclease H [Candidatus Aquiluna sp. IMCC13023]
Length = 368
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG A G + E GS + E +G TNN AEY+ +I L++ ++ +
Sbjct: 7 DGASRGNPGPASYGVHIEDESGSTIADFGEALGNQTNNYAEYQGVIAALRFLTTTDHRLV 66
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
++ DSKLV Q+ G WK+ + + L EA +L F ++ I R+ N+ ADA AN
Sbjct: 67 TIRLDSKLVVEQLSGRWKVKSPEIRELVFEASQLLGAFD-VKLEWIPRDKNTFADANANK 125
Query: 198 GI 199
+
Sbjct: 126 AL 127
>gi|296393054|ref|YP_003657938.1| phosphoglycerate mutase [Segniliparus rotundus DSM 44985]
gi|296180201|gb|ADG97107.1| Phosphoglycerate mutase [Segniliparus rotundus DSM 44985]
Length = 378
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLR-EGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG A GAV+ DG V R E +G ATNNVAEYR LI GL+ A +
Sbjct: 3 VVIEADGGSRGNPGPAAFGAVVL--DGDRVLAQRAEQIGHATNNVAEYRGLIAGLEAAKE 60
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WK+ ++ + L A L F + + + R N A
Sbjct: 61 LGASEVLVRMDSKLVVEQMSGRWKVKHEGMRELASRAAALSRAFDAVRYTWVPREQNKRA 120
Query: 192 DAQAN 196
DA N
Sbjct: 121 DALLN 125
>gi|357398989|ref|YP_004910914.1| hypothetical protein SCAT_1387 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337765398|emb|CCB74107.1| conserved protein of unknown function [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 419
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG GAV+ AE G + E +G ATNNVAEYR LI GL+ A +
Sbjct: 6 VEADGGSRGNPGPAGYGAVVFDAETGETLVEAAEYLGTATNNVAEYRGLIAGLRAAHELD 65
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSE 190
+ V+ DSKLV Q+ G WKI + + L EA + F ++ + + R N
Sbjct: 66 PEARVEVRMDSKLVVEQMSGRWKIKHPGMRPLAAEA---RTAFAPERVTYQWVPRARNKH 122
Query: 191 ADAQAN 196
AD AN
Sbjct: 123 ADRLAN 128
>gi|386355036|ref|YP_006053282.1| bifunctional RNase H/acid phosphatase [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|365805544|gb|AEW93760.1| bifunctional RNase H/acid phosphatase [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 420
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG GAV+ AE G + E +G ATNNVAEYR LI GL+ A +
Sbjct: 7 VEADGGSRGNPGPAGYGAVVFDAETGETLVEAAEYLGTATNNVAEYRGLIAGLRAAHELD 66
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSE 190
+ V+ DSKLV Q+ G WKI + + L EA + F ++ + + R N
Sbjct: 67 PEARVEVRMDSKLVVEQMSGRWKIKHPGMRPLAAEA---RTAFAPERVTYQWVPRARNKH 123
Query: 191 ADAQAN 196
AD AN
Sbjct: 124 ADRLAN 129
>gi|300780762|ref|ZP_07090616.1| ribonuclease HI [Corynebacterium genitalium ATCC 33030]
gi|300532469|gb|EFK53530.1| ribonuclease HI [Corynebacterium genitalium ATCC 33030]
Length = 383
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI-ATNNVAEYRALILGLKYALQ 131
TL DG S+GNPG AG+G+VL G+ + + VG ++NNVAEY L+ GL+ A
Sbjct: 3 VTLYTDGGSRGNPGVAGSGSVLYDASGATLAEIAYVVGKKSSNNVAEYCGLLRGLEAARD 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V DSKLV Q+ G WKI + ++ L EA++L F S + R N +A
Sbjct: 63 LGATDVDVFMDSKLVVEQMAGRWKIKHPDMKKLAFEARDLAAGFDSVTYTWVPRAKNKKA 122
Query: 192 DAQANM 197
D +N+
Sbjct: 123 DELSNV 128
>gi|403737779|ref|ZP_10950507.1| putative ribonuclease H/acid phosphatase [Austwickia chelonae NBRC
105200]
gi|403191891|dbj|GAB77277.1| putative ribonuclease H/acid phosphatase [Austwickia chelonae NBRC
105200]
Length = 403
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 6/133 (4%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GA++R AE G V+ E +G A+NNVAEY LI GL+ A +
Sbjct: 2 LVVEADGGSRGNPGVAGYGALVRDAETGRVLRERAEPLGKASNNVAEYSGLIAGLQAAAE 61
Query: 132 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL----KEKFQSFQINHILRN 186
+ V+ DSKLV Q+ G WKI ++++ L EA+ L K I R
Sbjct: 62 VDPAADVDVRMDSKLVVEQMSGRWKIKHEDMRRLADEARLLVAARKTAGGKVTFAWIPRE 121
Query: 187 LNSEADAQANMGI 199
N ADA +N+ +
Sbjct: 122 RNKAADALSNVAM 134
>gi|345852191|ref|ZP_08805141.1| bifunctional RNase H/acid phosphatase [Streptomyces zinciresistens
K42]
gi|345636325|gb|EGX57882.1| bifunctional RNase H/acid phosphatase [Streptomyces zinciresistens
K42]
Length = 395
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 11/128 (8%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL--- 130
+E DG S+GNPG AG GAV+ A G + E +G+ATNNVAEYR L+ GL+ A
Sbjct: 6 VEADGGSRGNPGPAGYGAVVVDAATGRTLAEAAEYIGVATNNVAEYRGLLAGLRAARDLD 65
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 188
H+R+ DSKLV Q+ G WKI + ++ L EA ++ F + ++ + I R N
Sbjct: 66 PAAAVHVRM--DSKLVVEQMSGRWKIKHPDMKPLAFEASKV---FPADRVTYEWIPRERN 120
Query: 189 SEADAQAN 196
AD AN
Sbjct: 121 KHADRLAN 128
>gi|291439957|ref|ZP_06579347.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291342852|gb|EFE69808.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 400
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 11/128 (8%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLK--YAL- 130
+E DG S+GNPG AG GAV+ A G + E +G+ATNNVAEYR L+ GL+ +AL
Sbjct: 6 VEADGGSRGNPGPAGYGAVVSDAATGETLAETAEYLGVATNNVAEYRGLLAGLRAAHALD 65
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 188
+ H+R+ DSKLV Q+ G WKI + ++ L +A + F ++ + I R N
Sbjct: 66 PRATVHVRM--DSKLVIEQMTGRWKIKHPDMKPLAAQAARV---FPPERVTYEWIPRERN 120
Query: 189 SEADAQAN 196
AD AN
Sbjct: 121 KHADRLAN 128
>gi|152967278|ref|YP_001363062.1| phosphoglycerate mutase [Kineococcus radiotolerans SRS30216]
gi|151361795|gb|ABS04798.1| Phosphoglycerate mutase [Kineococcus radiotolerans SRS30216]
Length = 366
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV++ A G V+ + E +G ATNNVAEYR L+ GL+ A
Sbjct: 7 VEADGGSRGNPGPAGYGAVVKDAATGEVLAEVAESIGRATNNVAEYRGLVAGLRAAQAVD 66
Query: 134 YK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL-KEKFQSFQINHILRNLNSEA 191
+ + V+ DSKLV Q+ G W++ + ++ L +EA+ L + F I R NS A
Sbjct: 67 PEASVEVRMDSKLVVEQMSGRWQVKHADMRALAQEARSLVRPGLVDF--GWIPRAQNSHA 124
Query: 192 D 192
D
Sbjct: 125 D 125
>gi|313127214|ref|YP_004037484.1| ribonuclease hi [Halogeometricum borinquense DSM 11551]
gi|448288314|ref|ZP_21479514.1| ribonuclease H [Halogeometricum borinquense DSM 11551]
gi|312293579|gb|ADQ68039.1| ribonuclease HI [Halogeometricum borinquense DSM 11551]
gi|445569833|gb|ELY24403.1| ribonuclease H [Halogeometricum borinquense DSM 11551]
Length = 197
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G + +G +V E +G TNN AEY ALI L+ A + G+
Sbjct: 73 FDGASRGNPGPAAIGWAIVNSEG-IVGEGSETIGETTNNRAEYEALIRALEAADEYGFDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q+ G + NN L +EL E+F + + H+ R +N AD+ AN
Sbjct: 132 VDVRGDSELIVKQVHGEYDTNNPELRERRVRVRELLERFDRWSLEHVPREINDRADSLAN 191
Query: 197 MGI 199
+
Sbjct: 192 EAL 194
>gi|222641167|gb|EEE69299.1| hypothetical protein OsJ_28580 [Oryza sativa Japonica Group]
Length = 521
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKY 128
N T+ FDG+ + + GAG VL + G + + +A++NVAEY AL+ GL+
Sbjct: 36 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGERLSYVLWIHFLASHNVAEYEALLHGLRI 93
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 94 AISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNN 153
Query: 189 SEADAQANMG 198
AD AN G
Sbjct: 154 EAADRLANFG 163
>gi|379735432|ref|YP_005328938.1| hypothetical protein BLASA_1993 [Blastococcus saxobsidens DD2]
gi|378783239|emb|CCG02907.1| conserved protein of unknown function [Blastococcus saxobsidens
DD2]
Length = 364
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Query: 74 TLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ- 131
+E DG S+GNPG AG GA++R A+ G V+ VG ATNNVAEY L+ GL+ AL
Sbjct: 6 VVEADGGSRGNPGPAGYGALVRDAQTGRVLAERAASVGRATNNVAEYGGLVAGLQAALDL 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+ V+ DSKLV Q+ G WKI + ++ L +A+++ K + + R N A
Sbjct: 66 DPSAQVEVRMDSKLVVEQMSGRWKIKHPDMQQLALQAQQIARKLGGVRYTWVPRAQNGAA 125
Query: 192 DAQAN 196
DA AN
Sbjct: 126 DALAN 130
>gi|344999384|ref|YP_004802238.1| phosphoglycerate mutase [Streptomyces sp. SirexAA-E]
gi|344315010|gb|AEN09698.1| Phosphoglycerate mutase [Streptomyces sp. SirexAA-E]
Length = 413
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 73 CTLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV + E V+ E +G+A+NNVAEYR LI GL A++
Sbjct: 7 LVVEADGGSRGNPGPAGYGAVVIDQETAQVLAETAEYIGVASNNVAEYRGLIAGLT-AVR 65
Query: 132 KGYK----HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
+ +RV+ DSKLV Q+ G WKI + ++ L EA + S I R
Sbjct: 66 DLFPDTAVRVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAAGILPA-ASVTYEWIPRAE 124
Query: 188 NSEADAQAN--MGIYLKDGQVEAECSS 212
N AD AN M + GQ E S+
Sbjct: 125 NKHADRLANEAMDAGKRGGQWEPSSST 151
>gi|159039131|ref|YP_001538384.1| phosphoglycerate mutase [Salinispora arenicola CNS-205]
gi|157917966|gb|ABV99393.1| Phosphoglycerate mutase [Salinispora arenicola CNS-205]
Length = 402
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+RA D G V+ +G ATNNVAEYR LI GL+ A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVRAPDTGEVLAERSAAIGTATNNVAEYRGLIAGLEAAAE 65
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
G + + DSKLV Q+ G W+I + L L +A L +F + + I R+ N
Sbjct: 66 LGAAEVEARMDSKLVVEQMCGRWQIKHPGLRPLAAQAAGLVGRFTAVRFTWIPRDRN 122
>gi|357389334|ref|YP_004904173.1| putative ribonuclease H/acid phosphatase [Kitasatospora setae
KM-6054]
gi|311895809|dbj|BAJ28217.1| putative ribonuclease H/acid phosphatase [Kitasatospora setae
KM-6054]
Length = 384
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG GAV+R A+ G V+ E +G ATNNVAEYR LI GL+ A
Sbjct: 8 VEADGGSRGNPGPAGYGAVVRDADTGQVLAEAAEYIGHATNNVAEYRGLIAGLRAARDLD 67
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ V+ DSKLV Q+ G W++ + + L EA+ + + + I R N +AD
Sbjct: 68 PDARVAVRMDSKLVVEQMSGRWQVKHPGMRPLAAEARGILPA-GNVTYDWIPRERNKDAD 126
Query: 193 AQAN 196
AN
Sbjct: 127 RLAN 130
>gi|377573598|ref|ZP_09802654.1| putative ribonuclease H/acid phosphatase [Mobilicoccus pelagius
NBRC 104925]
gi|377537713|dbj|GAB47819.1| putative ribonuclease H/acid phosphatase [Mobilicoccus pelagius
NBRC 104925]
Length = 461
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 73/132 (55%), Gaps = 8/132 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
+E DG S+GNPG AG GA++R E SV+ L +G +NNVAEY LI+GL AL+
Sbjct: 9 VEADGGSRGNPGVAGYGALVR-EGRSVLRELAAPLGKESNNVAEYTGLIVGLGAALEIAA 67
Query: 135 KH---IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKF----QSFQINHILRNL 187
I V+ DSKLV Q+ G WKI + ++ L +EA+ L S I R
Sbjct: 68 GEPVAIDVRMDSKLVVEQMSGRWKIKHADMQRLAREARALVADVVANGGSVDFTWIPRAE 127
Query: 188 NSEADAQANMGI 199
N ADA +N G+
Sbjct: 128 NKAADALSNEGM 139
>gi|222478744|ref|YP_002564981.1| ribonuclease H [Halorubrum lacusprofundi ATCC 49239]
gi|222451646|gb|ACM55911.1| ribonuclease H [Halorubrum lacusprofundi ATCC 49239]
Length = 198
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG G L DG +V E +G TNN AEY ALI L+ A + +
Sbjct: 73 FDGASRGNPGPGAVGWCLVTADG-IVAEGGERIGRVTNNQAEYAALIRALEAADEYDFDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I V+GDS+L+ Q++G W N+ L +EL E+F + I H+ R +N AD AN
Sbjct: 132 IDVRGDSQLIVKQVRGEWNANDPELRERRVRVRELLERFDRWSIGHVPREINERADDLAN 191
>gi|38347154|emb|CAE02434.2| OSJNBa0039G19.14 [Oryza sativa Japonica Group]
Length = 640
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ FDG+ + + GAG VL + G + + A++NVAEY AL+ GL+ A+ G
Sbjct: 186 TMHFDGSKRLS--DTGAGIVLISPTGEKLSYVLWIHFSASHNVAEYEALLHGLRIAVSFG 243
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+H+ V GDS+LV Q+ W + N+A E ++L++KF ++ H+LR+ N AD
Sbjct: 244 IRHLIVHGDSQLVANQVMKEWSCLDDNMAAYWHEVRKLEDKFDGLELTHVLRHNNDAADR 303
Query: 194 QANM 197
AN
Sbjct: 304 LANF 307
>gi|408828727|ref|ZP_11213617.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
somaliensis DSM 40738]
Length = 184
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 73 CTLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV L G + E +G+ATNNVAEY+ L+ GL+ A +
Sbjct: 9 LIVEADGGSRGNPGPAGYGAVVLDPVSGEALVETAEYIGVATNNVAEYKGLLAGLRAARE 68
Query: 132 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+RV+ DSKLV Q+ G WKI + ++ L EA + + I R N
Sbjct: 69 LAPDASVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAARIHPPGR-VTYEWIPREHNKH 127
Query: 191 ADAQAN 196
AD AN
Sbjct: 128 ADRLAN 133
>gi|315504418|ref|YP_004083305.1| phosphoglycerate mutase [Micromonospora sp. L5]
gi|315411037|gb|ADU09154.1| Phosphoglycerate mutase [Micromonospora sp. L5]
Length = 382
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL 130
+ +E DG S+GNPG AG GAV+R E G V+ E +G ATNNVAEYR LI GL+ A
Sbjct: 5 AVVIEADGGSRGNPGPAGYGAVVRDPETGEVLAERSESIGTATNNVAEYRGLIAGLEAAA 64
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
+ G + + DSKLV Q+ G W+I + L L +A L +F + + + R N
Sbjct: 65 ELGAAEVEARMDSKLVVEQMCGRWQIKHPGLRPLAAQAAGLVSRFAAVRFTWVPRERN 122
>gi|452957940|gb|EME63297.1| bifunctional RNase H/acid phosphatase [Rhodococcus ruber BKS 20-38]
Length = 361
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREG-VGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D V R +G ATNNVAEY+ LI GL A +
Sbjct: 4 VVVEADGGSRGNPGPAGYGAVVFDADHETVLAERSASIGRATNNVAEYQGLIAGLTAAAE 63
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WKI + ++ L A+EL F + + R N+ A
Sbjct: 64 LGADEVDVRMDSKLVVEQMSGRWKIKHPDMIPLAARARELAAGFSRIEFAWVPRAENAYA 123
Query: 192 DAQAN 196
D AN
Sbjct: 124 DRLAN 128
>gi|383621855|ref|ZP_09948261.1| ribonuclease H [Halobiforma lacisalsi AJ5]
gi|448702705|ref|ZP_21700138.1| ribonuclease H [Halobiforma lacisalsi AJ5]
gi|445777266|gb|EMA28236.1| ribonuclease H [Halobiforma lacisalsi AJ5]
Length = 196
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G V+ DG +V E +G ATNN AEY ALI L+ A Y
Sbjct: 73 FDGASRGNPGPAAIGWVIVTGDG-IVAEGSEEIGRATNNQAEYEALIAALEAARDYSYDD 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+R++GDS+L+ QI+G + NN L EL F + I H+ R +N AD AN
Sbjct: 132 VRIRGDSELIVKQIRGEYDTNNPELREKRVTVHELLSAFDEWSIEHVPREVNDRADELAN 191
>gi|302869110|ref|YP_003837747.1| phosphoglycerate mutase [Micromonospora aurantiaca ATCC 27029]
gi|302571969|gb|ADL48171.1| Phosphoglycerate mutase [Micromonospora aurantiaca ATCC 27029]
Length = 377
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG GAV+R E G V+ E +G ATNNVAEYR LI GL+ A + G
Sbjct: 3 IEADGGSRGNPGPAGYGAVVRDPETGEVLAERSESIGTATNNVAEYRGLIAGLEAAAELG 62
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
+ + DSKLV Q+ G W+I + L L +A L +F + + + R N
Sbjct: 63 AAEVEARMDSKLVVEQMCGRWQIKHPGLRPLAAQAAGLVSRFAAVRFTWVPRERN 117
>gi|38346855|emb|CAE02225.2| OSJNBb0015C06.3 [Oryza sativa Japonica Group]
Length = 1253
Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++N+AEY AL+ GL+ A+
Sbjct: 899 TMHFDGSKRLS--GTGAGVVLISPTGE---RLNYVLWIHFSASHNMAEYEALLHGLRIAI 953
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G +H+ V+GDS+LV Q+ W + N+A E ++L++KF ++ H+LR+ N
Sbjct: 954 SLGIRHLIVRGDSQLVVNQVMKEWSCLDDNMAAYRLEVRKLEDKFDGLELTHVLRHNNEA 1013
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1014 ADRLANFG 1021
>gi|57834031|emb|CAI44627.1| B1168G10.11 [Oryza sativa Japonica Group]
Length = 1489
Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++N+AEY AL+ GL+ A+
Sbjct: 1135 TMHFDGSKRLS--GTGAGVVLISPTGE---RLNYVLWIHFSASHNMAEYEALLHGLRIAI 1189
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G +H+ V+GDS+LV Q+ W + N+A E ++L++KF ++ H+LR+ N
Sbjct: 1190 SLGIRHLIVRGDSQLVVNQVMKEWSCLDDNMAAYRLEVRKLEDKFDGLELTHVLRHNNEA 1249
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1250 ADRLANFG 1257
>gi|77551564|gb|ABA94361.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1342
Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDG+ + + GAG VL + G + Y LR A++NVAEY AL+ GL+ A+
Sbjct: 1147 TMHFDGSKRLS--GTGAGVVLLSPTGERLSYVLRIHFS-ASHNVAEYEALLHGLRIAISL 1203
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V+GDS+LV Q+ W + N+ +E ++L++KF F++ H+LR+ N AD
Sbjct: 1204 GIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGFELTHVLRHNNEAAD 1263
Query: 193 AQAN 196
AN
Sbjct: 1264 RLAN 1267
>gi|254386860|ref|ZP_05002147.1| phosphoglycerate mutase [Streptomyces sp. Mg1]
gi|194345692|gb|EDX26658.1| phosphoglycerate mutase [Streptomyces sp. Mg1]
Length = 246
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 5/125 (4%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG G+V L G + E +G+ATNNVAEY+ LI GLK A +
Sbjct: 52 VEADGGSRGNPGPAGYGSVVLDPATGETLAERAEYIGVATNNVAEYKGLIAGLKAARELA 111
Query: 134 YK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ-SFQINHILRNLNSEA 191
+ V+ DSKLV Q+ G WKI + ++ L EA + + Q ++Q I R N A
Sbjct: 112 PDAQVLVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAATVLPRSQVTYQW--IPREQNKHA 169
Query: 192 DAQAN 196
D AN
Sbjct: 170 DRLAN 174
>gi|453050156|gb|EME97706.1| bifunctional RNase H/acid phosphatase [Streptomyces mobaraensis
NBRC 13819 = DSM 40847]
Length = 408
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 7/131 (5%)
Query: 70 CYSCTLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKY 128
+ +E DG S+GNPG AG GAV L A G V+ E +G ATNNVAEY+ LI GL+
Sbjct: 2 AHRFVVEADGGSRGNPGPAGYGAVVLDAATGEVLAEAAEYIGTATNNVAEYKGLIAGLEA 61
Query: 129 ALQ-KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILR 185
A I V+ DSKLV Q+ G WKI + ++ L A+ + F + ++ + I R
Sbjct: 62 ARALDPDADITVRMDSKLVVEQMSGRWKIKHPDMRPLAARARLV---FPADRVGYEWIPR 118
Query: 186 NLNSEADAQAN 196
N AD AN
Sbjct: 119 ERNKHADRLAN 129
>gi|298705061|emb|CBJ28520.1| ribonuclease HI [Ectocarpus siliculosus]
Length = 355
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 42/168 (25%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREG----------VGIA---TNNVAEYRA 121
L+FDG S+GNPG +G GAVL YRL E V I TNN AEYR
Sbjct: 186 LQFDGGSRGNPGPSGCGAVL--------YRLDESGEREEVWSSSVWIGEKRTNNEAEYRG 237
Query: 122 LILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWK------------------INNQNLAG 163
LI GL A + G K + V+GDSKLV Q+ G +K + + +
Sbjct: 238 LIEGLIAAEKLGIKRLSVEGDSKLVIQQMLGNYKGKQGKTERGGVGGGRGGGVTSPKMQP 297
Query: 164 LCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAECS 211
L +EA + + F + ++ HI+R N AD AN+ + D + + C+
Sbjct: 298 LFREATTISKAFDALELGHIMRAHNERADDLANIAM---DTETSSSCT 342
>gi|222637552|gb|EEE67684.1| hypothetical protein OsJ_25333 [Oryza sativa Japonica Group]
Length = 238
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 41 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 95
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 96 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 155
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 156 ADRLANFG 163
>gi|77554831|gb|ABA97627.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2010
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1437 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1491
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+LR+ N
Sbjct: 1492 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVLRHNNEA 1551
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1552 ADRLANFG 1559
>gi|38344596|emb|CAE05341.2| OSJNBa0079M09.16 [Oryza sativa Japonica Group]
Length = 1601
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1383 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1437
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+LR+ N
Sbjct: 1438 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVLRHNNEA 1497
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1498 ADRLANFG 1505
>gi|116309081|emb|CAH66189.1| OSIGBa0144J05.1 [Oryza sativa Indica Group]
Length = 1601
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1383 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1437
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+LR+ N
Sbjct: 1438 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVLRHNNEA 1497
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1498 ADRLANFG 1505
>gi|110288792|gb|ABG65979.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 256 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 310
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+LR+ N
Sbjct: 311 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVLRHNNEA 370
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 371 ADRLANFG 378
>gi|116309829|emb|CAH66866.1| H0307D04.11 [Oryza sativa Indica Group]
Length = 2017
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ FDG+ + + GAG VL + G + + +A++NVAEY AL+ GL+ A+ G
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGERLSYVLWIHFLASHNVAEYEALLHGLRIAISLG 1501
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N AD
Sbjct: 1502 IKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADR 1561
Query: 194 QANMG 198
AN G
Sbjct: 1562 LANFG 1566
>gi|406920065|gb|EKD58194.1| phosphoglycerate mutase [uncultured bacterium]
Length = 137
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREG---VGIATNNVAEYRALILGLKYALQKGY 134
DG S+GNPG AG G V+R DG V+ +EG +GIATNNVAEY A+I L + L+K +
Sbjct: 7 DGGSRGNPGHAGFGYVVR-RDGKVI---KEGYGYIGIATNNVAEYTAVIEALSW-LEKHF 61
Query: 135 KHIR--VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + DSKL Q+ G++K+ + + L + L F HI R LN EAD
Sbjct: 62 PKVDLVINLDSKLAVSQLTGIYKVKDSKIRDLVFSIRMLANSFGQIIFRHIPRELNREAD 121
Query: 193 AQAN 196
N
Sbjct: 122 KLVN 125
>gi|40538890|gb|AAR87147.1| putative polyprotein [Oryza sativa Japonica Group]
gi|50838974|gb|AAT81735.1| RNase H domain containing protein [Oryza sativa Japonica Group]
gi|108708966|gb|ABF96761.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1227
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GLK A+
Sbjct: 844 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLRGLKIAI 898
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ E ++L++KF ++ H+LR+ N
Sbjct: 899 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRHEVRKLEDKFDGLELTHVLRHNNEA 958
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 959 ADRLANFG 966
>gi|89179427|gb|ABD63162.1| RNase H family protein [Asparagus officinalis]
Length = 1189
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 3/130 (2%)
Query: 75 LEFDGASKGNPG---QAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
L FDGAS+ NP A G VL + +G V+ R + TNNVAEY AL++G++ A +
Sbjct: 628 LFFDGASRANPHGAITARVGVVLISPNGHVIPRGFSLIEPCTNNVAEYNALLMGMQLAEE 687
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+H+ GDS+L+ Q+QG +++ +++L + +KF+ F I +I R N+ A
Sbjct: 688 LNIQHLEAYGDSQLIVNQVQGEYEVRHEDLIPYYFAVLKQAQKFECFFIEYIPRAQNAYA 747
Query: 192 DAQANMGIYL 201
DA A++ L
Sbjct: 748 DALASLATSL 757
>gi|22795275|gb|AAN08247.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1696
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1253 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1307
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+LR+ N
Sbjct: 1308 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVLRHNNEA 1367
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1368 ADRLANFG 1375
>gi|423350371|ref|ZP_17328024.1| hypothetical protein HMPREF9719_00319 [Turicella otitidis ATCC
51513]
gi|404387629|gb|EJZ82738.1| hypothetical protein HMPREF9719_00319 [Turicella otitidis ATCC
51513]
Length = 420
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 70 CYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYR-----LREGVGIATNNVAEYRALIL 124
+ L+ DG S+GNPG AG+G+V+ AED V R E V TNNVAEY+ L+
Sbjct: 2 ARTVILQADGGSRGNPGIAGSGSVIFAEDHETVLRELSYVFGEKV---TNNVAEYQGLVN 58
Query: 125 GLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
GL A + G +RV DSKLV Q+ G W+I + ++ L AK+L E+ +
Sbjct: 59 GLNAARELGATTVRVFLDSKLVVEQMTGRWRIKHADMKRLATIAKKLGEEIGEVTYKWVP 118
Query: 185 RNLNSEAD 192
R N+ AD
Sbjct: 119 RAKNARAD 126
>gi|383651146|ref|ZP_09961552.1| bifunctional RNase H/acid phosphatase [Streptomyces chartreusis
NRRL 12338]
Length = 495
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 11/128 (8%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-- 131
+E DG S+GNPG AG GAV+ A G + E +G+ATNNVAEYR L+ GL+ A +
Sbjct: 6 VEADGGSRGNPGPAGYGAVVSDAATGETLREAAEYLGVATNNVAEYRGLVAGLRAAHELD 65
Query: 132 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 188
H+R+ DSKLV Q+ G W+I + ++ L A + F ++ + I R N
Sbjct: 66 PAATVHVRM--DSKLVIEQMSGRWQIKHPDMKPLAAAAARI---FPPGRVTYEWIPRERN 120
Query: 189 SEADAQAN 196
AD AN
Sbjct: 121 KHADRLAN 128
>gi|108708760|gb|ABF96555.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1659
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + AGAG VL + G RL + I A++N+AEY AL+ GL+ A+
Sbjct: 1102 TMHFDGSKRLT--GAGAGVVLISPTGE---RLSYVLWIHFSASHNMAEYEALLHGLRIAI 1156
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 1157 SLGIRRLIVRGDSQLVVNQVMKEWSCQDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEA 1216
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1217 ADRLANFG 1224
>gi|37991853|gb|AAR06299.1| putative gag-pol protein [Oryza sativa Japonica Group]
Length = 1653
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + AGAG VL + G RL + I A++N+AEY AL+ GL+ A+
Sbjct: 1102 TMHFDGSKRLT--GAGAGVVLISPTGE---RLSYVLWIHFSASHNMAEYEALLHGLRIAI 1156
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 1157 SLGIRRLIVRGDSQLVVNQVMKEWSCQDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEA 1216
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1217 ADRLANFG 1224
>gi|218196063|gb|EEC78490.1| hypothetical protein OsI_18391 [Oryza sativa Indica Group]
Length = 614
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 41 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 95
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 96 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 155
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 156 ADRLANFG 163
>gi|38346515|emb|CAE03810.2| OSJNBa0027H09.10 [Oryza sativa Japonica Group]
gi|38567795|emb|CAE76081.1| B1340F09.19 [Oryza sativa Japonica Group]
Length = 1570
Score = 81.3 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1321 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAV 1375
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++HILR+ N
Sbjct: 1376 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELSHILRHNNEA 1435
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1436 ADRLANFG 1443
>gi|78708485|gb|ABB47460.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 561
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I +NVAEY AL+ GL+ A+
Sbjct: 316 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSTLHNVAEYEALLHGLRIAV 370
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+A +E ++LK+KF ++ H+LR+ N
Sbjct: 371 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMAAYRQEVRKLKDKFDGLELTHVLRHDNEA 430
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 431 ADRLANFG 438
>gi|289762391|ref|ZP_06521769.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|289709897|gb|EFD73913.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
Length = 363
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 79 GASKGNPGQAGAGAVLRAEDGSVVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
GAS NPG AG GAV+ D S V ++ +G ATNNVAEYR LI GL A++ G
Sbjct: 10 GAS--NPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEA 67
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ AD AN
Sbjct: 68 AVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLAN 126
>gi|77555386|gb|ABA98182.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1940
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1367 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1421
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1422 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELSHVLRHNNEA 1481
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1482 ADRLANFG 1489
>gi|20451040|gb|AAM22011.1|AC093178_6 Putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31430828|gb|AAP52687.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1933
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1498
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1499 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELSHVLRHNNEA 1558
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1559 ADRLANFG 1566
>gi|22830273|gb|AAN08656.1| putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31431603|gb|AAP53354.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 641
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ K P GAG VL + G RLR + I A++NVAEY AL+ G + A+
Sbjct: 216 TMHFDGSKK--PSGTGAGVVLISPTGE---RLRYVLWIHFSASHNVAEYEALLHGQRIAV 270
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ + V DS+LV Q+ W + N+A +E ++L++KF ++ H+LR+ N
Sbjct: 271 SLRIRRLIVHDDSQLVVNQVMKEWSCLDDNMAAYQQEVRKLEDKFDGLELTHVLRHNNEA 330
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 331 ADRLANFG 338
>gi|62701710|gb|AAX92783.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77550530|gb|ABA93327.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1288
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RLR + I A++NVAEY AL+ GL+ A+
Sbjct: 901 TMHFDGSKRLS--GTGAGVVLISPTGE---RLRYVLCIHFSASHNVAEYEALLHGLRIAI 955
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 956 SLGIRRLIVCGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEA 1015
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1016 ADRLANFG 1023
>gi|46391119|gb|AAS90646.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1991
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1418 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1472
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1473 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1532
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1533 ADRLANFG 1540
>gi|77555417|gb|ABA98213.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1964
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1391 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1445
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1446 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1505
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1506 ADRLANFG 1513
>gi|77555933|gb|ABA98729.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1964
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1391 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1445
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1446 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1505
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1506 ADRLANFG 1513
>gi|77552111|gb|ABA94908.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1994
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1421 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1475
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1476 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1535
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1536 ADRLANFG 1543
>gi|77552282|gb|ABA95079.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1966
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1393 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1447
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1448 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1507
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1508 ADRLANFG 1515
>gi|18958679|gb|AAL82662.1|AC092387_10 retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|20270061|gb|AAM18149.1|AC092172_9 Putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31430891|gb|AAP52743.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1964
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1391 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1445
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1446 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1505
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1506 ADRLANFG 1513
>gi|22128685|gb|AAM92798.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1986
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1413 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1467
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1468 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1527
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1528 ADRLANFG 1535
>gi|110288734|gb|AAP52501.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1964
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1391 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1445
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1446 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1505
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1506 ADRLANFG 1513
>gi|53982138|gb|AAV25234.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1953
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1413 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1467
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1468 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1527
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1528 ADRLANFG 1535
>gi|46485805|gb|AAS98430.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2004
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1431 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1485
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1486 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1545
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1546 ADRLANFG 1553
>gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa Japonica Group]
Length = 1986
Score = 80.9 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1413 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1467
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1468 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1527
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1528 ADRLANFG 1535
>gi|46391121|gb|AAS90648.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46485807|gb|AAS98432.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2000
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1427 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1481
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1482 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1541
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1542 ADRLANFG 1549
>gi|77555338|gb|ABA98134.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1956
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1498
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1499 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1558
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1559 ADRLANFG 1566
>gi|77554304|gb|ABA97100.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 790
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 217 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 271
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 272 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 331
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 332 ADRLANFG 339
>gi|77556422|gb|ABA99218.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 938
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 365 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 419
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 420 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 479
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 480 ADRLANFG 487
>gi|77552546|gb|ABA95343.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2289
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1716 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1770
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1771 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1830
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1831 ADRLANFG 1838
>gi|77552232|gb|ABA95029.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1422 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1476
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1477 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1536
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1537 ADRLANFG 1544
>gi|62734763|gb|AAX96872.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77549715|gb|ABA92512.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1945
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1372 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1426
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1427 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1486
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1487 ADRLANFG 1494
>gi|13876521|gb|AAK43497.1|AC020666_7 gag-pol precursor [Oryza sativa Japonica Group]
Length = 2017
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1498
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1499 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1558
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1559 ADRLANFG 1566
>gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa Japonica Group]
Length = 2008
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1435 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1489
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1490 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1549
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1550 ADRLANFG 1557
>gi|116309752|emb|CAH66795.1| H0215F08.6 [Oryza sativa Indica Group]
Length = 1991
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1418 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1472
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1473 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1532
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1533 ADRLANFG 1540
>gi|110289529|gb|AAP54912.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1422 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1476
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1477 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1536
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1537 ADRLANFG 1544
>gi|108862820|gb|ABA98926.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1991
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1418 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1472
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1473 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1532
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1533 ADRLANFG 1540
>gi|54287609|gb|AAV31353.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1799
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1226 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1280
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1281 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1340
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1341 ADRLANFG 1348
>gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1756
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1183 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1237
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1238 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1297
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1298 ADRLANFG 1305
>gi|40882693|gb|AAR96234.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708469|gb|ABF96264.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2004
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1422 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1476
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1477 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1536
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1537 ADRLANFG 1544
>gi|38344380|emb|CAE02238.2| OSJNBb0054B09.2 [Oryza sativa Japonica Group]
gi|116309070|emb|CAH66179.1| OSIGBa0130O15.3 [Oryza sativa Indica Group]
gi|116309097|emb|CAH66204.1| OSIGBa0148D14.10 [Oryza sativa Indica Group]
Length = 1992
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1419 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1473
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1474 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1533
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1534 ADRLANFG 1541
>gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza sativa Japonica Group]
Length = 2010
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1437 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1491
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1492 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1551
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1552 ADRLANFG 1559
>gi|32487832|emb|CAE05063.1| OSJNBa0094P09.2 [Oryza sativa Japonica Group]
gi|39546270|emb|CAD39817.3| OSJNBa0079F16.18 [Oryza sativa Japonica Group]
Length = 1802
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1498
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1499 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1558
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1559 ADRLANFG 1566
>gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa Japonica Group]
Length = 1950
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1377 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1431
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1432 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1491
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1492 ADRLANFG 1499
>gi|32480322|emb|CAE02454.1| OSJNBa0042D13.7 [Oryza sativa Japonica Group]
Length = 909
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 336 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 390
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 391 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 450
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 451 ADRLANFG 458
>gi|18071370|gb|AAL58229.1|AC084762_3 putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 2026
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1498
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1499 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1558
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1559 ADRLANFG 1566
>gi|22128689|gb|AAM92802.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 2017
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1498
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1499 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMKAYRQEVRKLEDKFDGLELSHVLRHDNEA 1558
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1559 ADRLANFG 1566
>gi|110288733|gb|AAP52499.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1422 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1476
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1477 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMKAYRQEVRKLEDKFDGLELSHVLRHDNEA 1536
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1537 ADRLANFG 1544
>gi|78708235|gb|ABB47210.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1422 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1476
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1477 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNKA 1536
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1537 ADRLANFG 1544
>gi|19881590|gb|AAM00991.1|AC090482_20 Putative retroelement [Oryza sativa Japonica Group]
Length = 2017
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1498
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1499 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNKA 1558
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1559 ADRLANFG 1566
>gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa Japonica Group]
Length = 2013
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1440 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1494
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1495 SLGIKRLIVRGDSQLVVNQVMKEWSYLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1554
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1555 ADRLANFG 1562
>gi|110289671|gb|ABG66296.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1658
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ FDG+ + GAG VL + G + + A++NVAEY AL+ GL+ A+ G
Sbjct: 1075 TMHFDGSKRLT--GTGAGVVLISPTGERLSYVLWKHFSASHNVAEYEALLHGLRIAISLG 1132
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N AD
Sbjct: 1133 IRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAADR 1192
Query: 194 QANMG 198
AN G
Sbjct: 1193 LANFG 1197
>gi|32488767|emb|CAE04320.1| OSJNBb0016D16.11 [Oryza sativa Japonica Group]
Length = 1748
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ FDG SK PG GAG VL + G + A++NVAEY AL+ GL+ A+ G
Sbjct: 1390 TMHFDG-SKRLPG-TGAGVVLISPTGRKIKLCAWIHFSASHNVAEYEALLHGLRIAISLG 1447
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
K + V+GDS+LV Q+ W + N+ +E ++ ++KF +++H+LR+ N AD
Sbjct: 1448 IKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKWEDKFDGLELSHVLRHNNEAADR 1507
Query: 194 QANMG 198
AN G
Sbjct: 1508 LANFG 1512
>gi|77554274|gb|ABA97070.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1988
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1415 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1469
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1470 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMIAYRQEVRKLEDKFDGLELSHVLRHNNEA 1529
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1530 ADRLANFG 1537
>gi|418474679|ref|ZP_13044154.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
coelicoflavus ZG0656]
gi|371544694|gb|EHN73379.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
coelicoflavus ZG0656]
Length = 174
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 70/129 (54%), Gaps = 11/129 (8%)
Query: 74 TLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ- 131
+E DG S+GNPG AG GAV L G + E +G+ TNNVAEYR L+ GL+ A +
Sbjct: 16 VVEADGGSRGNPGPAGYGAVVLDPATGESLVEAAEYLGVVTNNVAEYRGLLAGLRAAREL 75
Query: 132 --KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNL 187
H+R+ DSKLV Q+ G WKI + ++ L EA + F ++ + I R
Sbjct: 76 DPDAVVHVRM--DSKLVVEQMSGRWKIKHPDMKPLAAEAARV---FPPGRVTYEWIPRAS 130
Query: 188 NSEADAQAN 196
N AD AN
Sbjct: 131 NKHADRLAN 139
>gi|358456704|ref|ZP_09166926.1| Phosphoglycerate mutase [Frankia sp. CN3]
gi|357080025|gb|EHI89462.1| Phosphoglycerate mutase [Frankia sp. CN3]
Length = 389
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREG-VGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R D V R G +G+ATNNVAEY+ LI GL+ A +
Sbjct: 6 IVVEADGGSRGNPGPAGYGAVVRDADSGAVLAERAGAIGVATNNVAEYQGLIAGLRAAAE 65
Query: 132 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNL 161
+ V+ DSKLV Q+ G WKI + ++
Sbjct: 66 VAPDADVEVRMDSKLVVEQMSGRWKIKHPSM 96
>gi|403714519|ref|ZP_10940422.1| putative ribonuclease H/acid phosphatase [Kineosphaera limosa NBRC
100340]
gi|403211452|dbj|GAB95105.1| putative ribonuclease H/acid phosphatase [Kineosphaera limosa NBRC
100340]
Length = 440
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGL-KYALQK 132
+E DG S+GNPG AG GA++R A +G+V+ E +G A+NNVAEY L+ GL + L
Sbjct: 8 VEADGGSRGNPGVAGFGALVRDAANGAVLAERAEPLGKASNNVAEYTGLVAGLEEVELID 67
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKF-QSFQI---NHILRNLN 188
+ V+ DSKLV Q+ G WKI ++++ L +A+ + + QS + I R N
Sbjct: 68 PSAAVEVRMDSKLVVEQMSGRWKIKHEDMKRLAADARAITTRLRQSGGVVVYTWIPRERN 127
Query: 189 SEADAQANMGI 199
ADA +N G+
Sbjct: 128 KAADALSNDGM 138
>gi|448823948|ref|YP_007417115.1| ribonuclease HI [Corynebacterium urealyticum DSM 7111]
gi|448277445|gb|AGE36869.1| ribonuclease HI [Corynebacterium urealyticum DSM 7111]
Length = 435
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL-- 130
++E DG S+GNPG AG G+ ++ G+ V + + + ATNNVAEY+ LI GL A+
Sbjct: 3 LSVECDGGSRGNPGPAGTGSSVKDAAGAEVGCVWQFIKHATNNVAEYQGLINGLNLAVEI 62
Query: 131 --QKGYKH----IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
Q+G K + V+ DSKLV Q+ G WKI + ++ L +E K ++ + +
Sbjct: 63 AEQQGVKPGSLSVDVRMDSKLVVEQMSGRWKIKHPDMKPLAQEVKRIEGQLAQVSYTWVP 122
Query: 185 RNLNSEADAQANMGIYLKDG 204
R N+ AD AN + ++G
Sbjct: 123 RAQNARADELANRAMDEREG 142
>gi|172040977|ref|YP_001800691.1| bifunctional RNase H/acid phosphatase [Corynebacterium urealyticum
DSM 7109]
gi|171852281|emb|CAQ05257.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
Length = 435
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL-- 130
++E DG S+GNPG AG G+ ++ G+ V + + + ATNNVAEY+ LI GL A+
Sbjct: 3 LSVECDGGSRGNPGPAGTGSSVKDAAGAEVGCVWQFIKHATNNVAEYQGLINGLNLAVEI 62
Query: 131 --QKGYKH----IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
Q+G K + V+ DSKLV Q+ G WKI + ++ L +E K ++ + +
Sbjct: 63 AEQQGVKPGSLSVDVRMDSKLVVEQMSGRWKIKHPDMKPLAQEVKRIEGQLAQVSYTWVP 122
Query: 185 RNLNSEADAQANMGIYLKDG 204
R N+ AD AN + ++G
Sbjct: 123 RAQNARADELANRAMDEREG 142
>gi|50300537|gb|AAT73678.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1992
Score = 80.5 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1419 TMHFDGSKRLS--GTGAGVVLISPAGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1473
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1474 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1533
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1534 ADRLANFG 1541
>gi|38346695|emb|CAE02180.2| OSJNBa0080E14.11 [Oryza sativa Japonica Group]
Length = 2001
Score = 80.5 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPAGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1498
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1499 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1558
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1559 ADRLANFG 1566
>gi|336252198|ref|YP_004595305.1| ribonuclease H [Halopiger xanaduensis SH-6]
gi|335336187|gb|AEH35426.1| ribonuclease H [Halopiger xanaduensis SH-6]
Length = 197
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG S+GNPG AG G V+ DG +V E +G ATNN AEY ALI L+ A G+
Sbjct: 73 FDGGSRGNPGPAGIGWVIVTGDG-IVAEAGERIGRATNNQAEYEALIAALEAARDYGFDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + NN L EL F + + H+ R +N AD AN
Sbjct: 132 VHVRGDSELIVKQVRGEYDTNNPELRERRVTVHELLGSFDEWTLEHVPREVNDRADGLAN 191
>gi|51854356|gb|AAU10736.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353374|gb|AAU43942.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1995
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1429 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1483
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1484 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEIRKLEDKFDGLELSHVLRHNNEA 1543
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1544 ADRLANFG 1551
>gi|260655683|ref|ZP_05861156.1| Ribonuclease HI [Jonquetella anthropi E3_33 E1]
gi|424845430|ref|ZP_18270041.1| ribonuclease HI [Jonquetella anthropi DSM 22815]
gi|260629600|gb|EEX47794.1| Ribonuclease HI [Jonquetella anthropi E3_33 E1]
gi|363986868|gb|EHM13698.1| ribonuclease HI [Jonquetella anthropi DSM 22815]
Length = 196
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG GAGAVL G V++ + + TNN AEY AL L L+ Q+G +
Sbjct: 7 FDGASRGNPGTGGAGAVLLC-GGRPVWQAALPIELCTNNEAEYTALGLLLREIEQRGLRG 65
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
V GDS+LV Q+ G WKI LA L EL K + R N+ AD +N
Sbjct: 66 ASVFGDSQLVIRQVTGAWKIKEPRLAALAAPLIELA-KTLGVSFRWVPREQNALADRLSN 124
Query: 197 MGI 199
I
Sbjct: 125 RAI 127
>gi|4680180|gb|AAD27548.1|AF111709_2 polyprotein [Oryza sativa Indica Group]
Length = 829
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++N+AEY AL+ GL+ A+
Sbjct: 256 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNIAEYEALLHGLRIAI 310
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 311 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 370
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 371 ADRLANFG 378
>gi|38344628|emb|CAE02527.2| OSJNBb0003A12.14 [Oryza sativa Japonica Group]
Length = 1863
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++N+AEY AL+ GL+ A+
Sbjct: 1290 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNIAEYEALLHGLRIAI 1344
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1345 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1404
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1405 ADRLANFG 1412
>gi|68535744|ref|YP_250449.1| bifunctional RNase H/acid phosphatase [Corynebacterium jeikeium
K411]
gi|68263343|emb|CAI36831.1| rnhA [Corynebacterium jeikeium K411]
Length = 431
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ--- 131
+E DG S+GNPG AG G+ + D V R E + ATNNVAEY+ LI L+ A++
Sbjct: 5 VECDGGSRGNPGIAGCGSSVLEGDQEVAARW-EFIAKATNNVAEYQGLINALELAIEVAK 63
Query: 132 -----KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
G I+V+ DSKLV Q+ G WKI + ++ L KEL+ + N + R
Sbjct: 64 IRGVAAGDLEIQVRMDSKLVVEQMSGRWKIKHPDMKPLAARVKELEATLAAVTYNWVPRA 123
Query: 187 LNSEADAQANMGI 199
N AD AN +
Sbjct: 124 QNKRADELANRAM 136
>gi|126178291|ref|YP_001046256.1| ribonuclease H [Methanoculleus marisnigri JR1]
gi|125861085|gb|ABN56274.1| ribonuclease H [Methanoculleus marisnigri JR1]
Length = 142
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+ TL DGAS+GNPG A V+ DGSVV +G ATNNVAEY A+I GL A +
Sbjct: 6 AVTLYTDGASRGNPGDAAWAYVI-VRDGSVVAGRSGYIGTATNNVAEYHAVINGLDAARE 64
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
+ V+ DS+LV Q+ G ++I ++LAGL +E + F + + R
Sbjct: 65 FTGGRLEVRSDSELVVRQLTGRYRITKEHLAGLAEEVRRRMRHFAEVRFESVPR 118
>gi|21741950|emb|CAD40441.1| OSJNBa0035B13.14 [Oryza sativa Japonica Group]
Length = 1736
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL GL+ A+
Sbjct: 1345 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALFHGLRIAI 1399
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1400 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1459
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1460 ADRLANFG 1467
>gi|77553887|gb|ABA96683.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1844
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISLTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1498
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1499 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1558
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1559 ADRLANFG 1566
>gi|77554600|gb|ABA97396.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2196
Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1623 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1677
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1678 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMTYRQEVRKLEDKFDGLELSHVLRHNNEA 1737
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1738 ADRLANFG 1745
>gi|334337365|ref|YP_004542517.1| phosphoglycerate mutase [Isoptericola variabilis 225]
gi|334107733|gb|AEG44623.1| Phosphoglycerate mutase [Isoptericola variabilis 225]
Length = 392
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREG-VGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG GA++R D V R G +G +TNNVAEY L+ GL+ A +
Sbjct: 9 VEADGGSRGNPGPAGWGALVRDADSGAVLAERAGYLGESTNNVAEYSGLVAGLRAAREVD 68
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
H+ V+ DS+LV Q+ G W+I + L L +EA + Q + R+ N+ AD
Sbjct: 69 PDAHVLVRMDSRLVVEQMTGRWQIKHAALRELAREAASVLPADQ-VAYEWVPRSENAAAD 127
Query: 193 AQAN 196
AN
Sbjct: 128 RLAN 131
>gi|260578172|ref|ZP_05846092.1| ribonuclease HI [Corynebacterium jeikeium ATCC 43734]
gi|258603711|gb|EEW16968.1| ribonuclease HI [Corynebacterium jeikeium ATCC 43734]
Length = 437
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ--- 131
+E DG S+GNPG AG G+ + D V R E + ATNNVAEY+ LI L+ A++
Sbjct: 5 VECDGGSRGNPGIAGCGSSVLEGDQEVAARW-EFIAKATNNVAEYQGLINALELAIEVAK 63
Query: 132 -----KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
G I+V+ DSKLV Q+ G WKI + ++ L KEL+ + N + R
Sbjct: 64 MRGVAAGDLEIQVRMDSKLVVEQMSGRWKIKHPDMKPLAARVKELEATLAAVTYNWVPRA 123
Query: 187 LNSEADAQANMGI 199
N AD AN +
Sbjct: 124 QNKRADELANRAM 136
>gi|332670763|ref|YP_004453771.1| phosphoglycerate mutase [Cellulomonas fimi ATCC 484]
gi|332339801|gb|AEE46384.1| Phosphoglycerate mutase [Cellulomonas fimi ATCC 484]
Length = 404
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+R A G V+ + +G+A+NNVAEY L+ GL+ AL
Sbjct: 5 LVVEADGGSRGNPGPAGYGAVVRDAGTGDVLAERADFLGVASNNVAEYSGLVAGLRAALA 64
Query: 132 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ V+ DS+LV Q++G WKI + ++ E L + + + R N+
Sbjct: 65 IDPDARLEVRMDSQLVIEQMRGTWKIKHADMRRFADEVHALVDP-TTVTWTWVPRARNAA 123
Query: 191 ADAQANMGI 199
AD AN+ +
Sbjct: 124 ADRLANLAM 132
>gi|448406248|ref|ZP_21572770.1| ribonuclease H [Halosimplex carlsbadense 2-9-1]
gi|445678087|gb|ELZ30582.1| ribonuclease H [Halosimplex carlsbadense 2-9-1]
Length = 134
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 72 SCTLEFDGASK-GNPGQAGAGAVLRAEDGSVVYRLREG---VGIATNNVAEYRALILGLK 127
+ FDG ++ NPG + G ++ +D + +EG +G +TNN EY ALI GL+
Sbjct: 6 PAVIHFDGGTRPDNPGPSAIGYIVETDDWT-----KEGNDHIGESTNNRTEYHALIRGLE 60
Query: 128 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
A +K + +GDS+++ Q++G + +N L L +EL +F+ F+I HI R
Sbjct: 61 VASEKRCTEVEARGDSEVIVKQVRGEYGVNQPELRPLRDRVQELANEFEQFEIQHIPREE 120
Query: 188 NSEAD 192
N EAD
Sbjct: 121 NWEAD 125
>gi|13129430|gb|AAK13088.1|AC078839_4 Gag-Pol precursor [Oryza sativa Japonica Group]
Length = 677
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I +NVAEY AL+ GL+ A+
Sbjct: 316 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSTLHNVAEYEALLHGLRIAV 370
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+A +E ++LK+KF ++ H+LR+ N
Sbjct: 371 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMAAYRQEVRKLKDKFDGLELTHVLRHDNEA 430
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 431 ADRLANFG 438
>gi|77550802|gb|ABA93599.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1912
Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1440 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1494
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ E ++L++KF +++H+LR+ N
Sbjct: 1495 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRPEVRKLEDKFDGLELSHVLRHNNEA 1554
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1555 ADRLANFG 1562
>gi|398347057|ref|ZP_10531760.1| ribonuclease HI [Leptospira broomii str. 5399]
Length = 134
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG + G + ED ++ + E + TNN AE+ AL GL + L+ +
Sbjct: 9 DGASKGNPGPSSIGVAI-FEDEEEIHSISERIEDGTNNTAEWAALEAGLIWCLENKASEV 67
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV Q++G +K+ + +L + L K SF+I H++R N AD AN+
Sbjct: 68 KAFLDSELVVKQVKGEYKVKSPHLIEAKRRVISLSSKLDSFKIAHVMREKNKRADKLANL 127
Query: 198 GI 199
Sbjct: 128 AF 129
>gi|62733846|gb|AAX95955.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77550301|gb|ABA93098.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1731
Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 16/132 (12%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI-------ATNNVAEYRALILGL 126
T+ FDG+ + + AGAG VL ++ RE + A++NVAEY AL+ GL
Sbjct: 1216 TMHFDGSKRLS--GAGAGVVL-------IFPTRERLSYVLWIHFSASHNVAEYEALLHGL 1266
Query: 127 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+ A+ G + + V+GDS+LV Q+ W + N+ +E ++LK+KF ++ H+LR+
Sbjct: 1267 RIAISLGIQRLIVRGDSQLVVNQVMKEWSCLDDNMTANRQEVRKLKDKFDGLELTHVLRH 1326
Query: 187 LNSEADAQANMG 198
N AD AN G
Sbjct: 1327 NNEAADRLANFG 1338
>gi|406882482|gb|EKD30269.1| ribonuclease H [uncultured bacterium (gcode 4)]
Length = 135
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG ++ NPG AG G + E+G + R + +GIATNN AEY+ + G++ ++ G I
Sbjct: 8 DGGARNNPGPAGIGVFITDENGKPLERRHKYLGIATNNQAEYQGALHGIRRGIELGATEI 67
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKF-QSFQINHILRNLNSEADAQAN 196
++ DSKLV Q+ G +KI N L + +E ++L E + Q HI R N EAD +N
Sbjct: 68 ELRMDSKLVVEQLSGNFKIKNPELKIIFREIQDLLEAWCGRIQHIHIRREHNGEADRLSN 127
Query: 197 MGI 199
+ +
Sbjct: 128 VAM 130
>gi|294629067|ref|ZP_06707627.1| phosphoglycerate mutase [Streptomyces sp. e14]
gi|292832400|gb|EFF90749.1| phosphoglycerate mutase [Streptomyces sp. e14]
Length = 401
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 70/128 (54%), Gaps = 11/128 (8%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLK--YALQ 131
+E DG S+GNPG AG GAV L G + E +G TNNVAEYR L+ GL+ +AL
Sbjct: 41 VEADGGSRGNPGPAGYGAVVLDPATGEALAEAAEYLGTVTNNVAEYRGLLAGLRAAHALD 100
Query: 132 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 188
+ H+R+ DSKLV Q+ G WKI + +L L A + F ++ + I R N
Sbjct: 101 PEARVHVRM--DSKLVVEQMSGRWKIKHPDLKPLATMAARV---FPPDRVTYEWIPRERN 155
Query: 189 SEADAQAN 196
AD AN
Sbjct: 156 KHADRLAN 163
>gi|448352651|ref|ZP_21541432.1| ribonuclease H [Natrialba hulunbeirensis JCM 10989]
gi|445641930|gb|ELY95001.1| ribonuclease H [Natrialba hulunbeirensis JCM 10989]
Length = 197
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREG---VGIATNNVAEYRALILGLKYALQKG 133
FDG ++GNPG AG G V+ +G V EG +G ATNN AEY ALI L+ A G
Sbjct: 73 FDGGARGNPGPAGIGWVIVTSEGIVA----EGSNRIGRATNNQAEYEALIAALEAARDYG 128
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
Y I V+GDS+L+ Q++G + NN L EL F + + H+ R +NS AD
Sbjct: 129 YDEIHVRGDSELIVKQVRGEYNTNNPELRERRVTVHELLRAFDEWTLEHVPREVNSRADE 188
Query: 194 QAN 196
AN
Sbjct: 189 LAN 191
>gi|76803222|ref|YP_331317.1| ribonuclease H I [Natronomonas pharaonis DSM 2160]
gi|76559087|emb|CAI50685.1| ribonuclease H, type 1 [Natronomonas pharaonis DSM 2160]
Length = 195
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G V+ +DG +V E +G ATNN AEY ALI L A +
Sbjct: 72 FDGASRGNPGPAAIGWVIVTDDG-IVAEGSERIGRATNNQAEYEALIEALAAAADYAFDE 130
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
V+GDS+L+ Q++G W N+ L ++L E+F + ++H+ R +N AD AN
Sbjct: 131 AVVKGDSQLIVKQVRGEWDTNDPTLREKRVRVRKLLEEFSEWSLDHVPREINDRADDLAN 190
>gi|406912524|gb|EKD52119.1| ribonuclease H [uncultured bacterium]
Length = 143
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG AG GA L + +G YR + TNN AEY L+L L + I
Sbjct: 14 DGASRGNPGLAGCGAYLCSPEGQE-YREFRFLDQVTNNQAEYEGLLLALTKLTELQADCI 72
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
++ DS+L+ Q++G +++ N N+ L ++A+ L + F S Q H+ R N AD AN
Sbjct: 73 MLRADSELMIKQLKGEYRVKNANMVPLFRKAQVLLKNFSSVQFEHVPRAQNKIADGLANQ 132
Query: 198 GI 199
I
Sbjct: 133 AI 134
>gi|348687656|gb|EGZ27470.1| hypothetical protein PHYSODRAFT_453462 [Phytophthora sojae]
Length = 136
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 78 DGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVG-IATNNVAEYRALILGLKYALQKGYK 135
DGAS+GNPG++G GA+L G V+ + VG TNN AEY L+L L+ A +
Sbjct: 8 DGASRGNPGRSGCGALLVDPSTGRVLATGAKYVGDRETNNAAEYHGLLLALELAQRHEAA 67
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 195
H+ V DS+L+ Q+QG +++ NL L ++ KEL + +H+ R N+ AD A
Sbjct: 68 HVHVLMDSQLIVRQMQGQYRVKAANLRRLHQQCKELSAELPHVTFSHVPREDNAAADRLA 127
Query: 196 NMGI 199
N I
Sbjct: 128 NEAI 131
>gi|13489188|gb|AAK27822.1|AC022457_25 putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1720
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 8/125 (6%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQKG 133
FDG+ + GAG VL + G RL + + I A++NVAEY AL+ GL+ A+ G
Sbjct: 1183 FDGSKRLT--GTGAGVVLISPTGE---RLSDVLWIHFSASHNVAEYEALLHGLRIAISLG 1237
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N AD
Sbjct: 1238 IRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAADR 1297
Query: 194 QANMG 198
AN G
Sbjct: 1298 LANFG 1302
>gi|5902445|dbj|BAA84458.1| GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1032
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I ++NVAEY AL+ GL+ A+
Sbjct: 459 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSTSHNVAEYEALLHGLRIAI 513
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 514 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 573
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 574 ADRLANFG 581
>gi|108705936|gb|ABF93731.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1953
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I ++NVAEY AL+ GL+ A+
Sbjct: 1380 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSTSHNVAEYEALLHGLRIAI 1434
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1435 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1494
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1495 ADRLANFG 1502
>gi|31432435|gb|AAP54065.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1422 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1476
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1477 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 1536
Query: 191 ADAQANMG 198
AD N G
Sbjct: 1537 ADRLVNFG 1544
>gi|448350244|ref|ZP_21539063.1| ribonuclease H [Natrialba taiwanensis DSM 12281]
gi|445637751|gb|ELY90899.1| ribonuclease H [Natrialba taiwanensis DSM 12281]
Length = 197
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG ++GNPG AG G V+ DG +V + +G ATNN AEY ALI L+ A GY
Sbjct: 73 FDGGARGNPGPAGIGWVIVTGDG-IVAEGSKRIGRATNNQAEYEALIAALEAARDYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + N+ +L EL +F + + H+ R +NS AD AN
Sbjct: 132 LHVRGDSELIVKQVRGEYNTNDPDLREKRVTVHELLTEFDEWTLEHVPREVNSRADELAN 191
Query: 197 MGI 199
+
Sbjct: 192 KAL 194
>gi|374307431|ref|YP_005053862.1| ribonuclease H [Filifactor alocis ATCC 35896]
gi|291166555|gb|EFE28601.1| ribonuclease H [Filifactor alocis ATCC 35896]
Length = 230
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 78 DGASKGNPGQAGAG-AVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
DG S+GNPG + G +++ G + + E +G TNN+AEY AL L+ L K
Sbjct: 9 DGGSRGNPGPSAIGYKIIQPSTGEFLC-IGEEIGETTNNIAEYTALCESLRVCLCNHVKS 67
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V DS+LV QI G +++ N NL L ++AK + F I+HILR N EAD N
Sbjct: 68 VEVYMDSELVVKQIIGNYRVKNINLKPLYEQAKNYISQLSDFSIHHILRGKNKEADRLVN 127
Query: 197 MGI 199
+ +
Sbjct: 128 LAL 130
>gi|448369893|ref|ZP_21556346.1| ribonuclease H [Natrialba aegyptia DSM 13077]
gi|445650333|gb|ELZ03257.1| ribonuclease H [Natrialba aegyptia DSM 13077]
Length = 197
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG ++GNPG AG G V+ DG +V + +G ATNN AEY ALI L+ A GY
Sbjct: 73 FDGGARGNPGPAGIGWVIVTGDG-IVAEGSKRIGRATNNQAEYEALIAALEAARDYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + N+ +L EL +F + + H+ R +NS AD AN
Sbjct: 132 LHVRGDSELIVKQVRGEYNTNDPDLREKRVTVHELLTEFDEWTLEHVPREVNSRADELAN 191
>gi|108711454|gb|ABF99249.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1552
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1007 TMHFDGSKRLT--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1061
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N
Sbjct: 1062 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEA 1121
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1122 ADRLANFG 1129
>gi|50355721|gb|AAT75246.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1512
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 967 TMHFDGSKRLT--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1021
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N
Sbjct: 1022 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEA 1081
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1082 ADRLANFG 1089
>gi|108706113|gb|ABF93908.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 459 TVHFDGSKRLT--GTGAGVVLIFPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 513
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 514 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEA 573
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 574 ADRLANFG 581
>gi|54287556|gb|AAV31300.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54291739|gb|AAV32108.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1988
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1415 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1469
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E + L++KF +++H+LR+ N
Sbjct: 1470 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRRLEDKFDGLELSHVLRHNNEA 1529
Query: 191 ADAQANMG 198
AD N G
Sbjct: 1530 ADRLTNFG 1537
>gi|77552456|gb|ABA95253.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1032
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A
Sbjct: 459 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAN 513
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 514 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 573
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 574 ADRLANFG 581
>gi|456969859|gb|EMG10771.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
LT2186]
Length = 133
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ DGASKGNPG + G V + +R+ E +G TNNVAE+ AL G++ + +
Sbjct: 3 TIYCDGASKGNPGPSSIGIVAYIHEKEE-FRISERIGETTNNVAEWSALKKGIEECISRK 61
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
+ I DS+LV Q+ G +K+ + NL KE +L SFQI H+ R
Sbjct: 62 FDSIHAYMDSELVVKQVNGKYKVKHPNLLEYKKEVDKLISSLHSFQITHVPR 113
>gi|297199289|ref|ZP_06916686.1| bifunctional RNase H/acid phosphatase [Streptomyces sviceus ATCC
29083]
gi|297147350|gb|EFH28596.1| bifunctional RNase H/acid phosphatase [Streptomyces sviceus ATCC
29083]
Length = 441
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 70/128 (54%), Gaps = 11/128 (8%)
Query: 75 LEFDGASKGNPGQAGAG-AVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYA--LQ 131
+E DG S+GNPG AG G VL A G + E +G+ TNNVAEYR L+ GL+ A L
Sbjct: 53 VEADGGSRGNPGPAGYGCVVLDAATGETLVETYEYLGVVTNNVAEYRGLLAGLRAAHDLD 112
Query: 132 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 188
+ H+R+ DSKLV Q+ G WKI + ++ L A + F ++ + I R N
Sbjct: 113 PSARVHVRM--DSKLVVEQMSGRWKIKHPDMKPLALAAGRV---FPPGRVTYEWIPREQN 167
Query: 189 SEADAQAN 196
AD AN
Sbjct: 168 KHADRLAN 175
>gi|411001679|ref|ZP_11378008.1| bifunctional RNase H/acid phosphatase [Streptomyces globisporus
C-1027]
Length = 413
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Query: 73 CTLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYA-- 129
+E DG S+GNPG AG GAV + G + E +G+ATNNVAEYR LI GL A
Sbjct: 7 VVVEADGGSRGNPGPAGYGAVVIDPATGEPLAEAAEYIGVATNNVAEYRGLIAGLTAAKA 66
Query: 130 -LQKGYKHIR--VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+ +R V+ DSKLV Q+ G WKI + ++ L A + S I R
Sbjct: 67 LFPDAGEALRVHVRMDSKLVVEQMSGRWKIKHPDMKPLAARAAAILPP-SSVTYEWIPRA 125
Query: 187 LNSEADAQANMGIYL-KDG-QVEAECSS 212
N AD AN + +DG Q EA S+
Sbjct: 126 QNKHADRLANEAMDAGRDGRQWEASAST 153
>gi|302524447|ref|ZP_07276789.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. AA4]
gi|302433342|gb|EFL05158.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. AA4]
Length = 380
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV++ A G V+ E +G+ATNNVAEY L+ GL A +
Sbjct: 5 AIVEADGGSRGNPGPAGYGAVVKDASTGEVLAERHEYLGVATNNVAEYSGLVAGLAAAAE 64
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+ DSKLV Q+ G WKI + L L +A+E+ F+ I R NS A
Sbjct: 65 LGVSIVDVRMDSKLVVEQMSGRWKIKHAALQPLAAQAREIAAGFERVSYTWIPRAENSHA 124
Query: 192 DAQANMGI 199
D AN+ +
Sbjct: 125 DRLANVAM 132
>gi|51038246|gb|AAT94049.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1844
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ G + A+
Sbjct: 1371 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGPRIAI 1425
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 1426 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELSHVLRHNNEA 1485
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1486 ADRLANFG 1493
>gi|448362254|ref|ZP_21550865.1| ribonuclease H [Natrialba asiatica DSM 12278]
gi|445648775|gb|ELZ01723.1| ribonuclease H [Natrialba asiatica DSM 12278]
Length = 197
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG ++GNPG AG G V+ DG +V + +G ATNN AEY ALI L+ A GY
Sbjct: 73 FDGGARGNPGPAGIGWVIVTGDG-IVAEGSKRIGRATNNQAEYEALIAALEAARDYGYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + N+ L EL +F + + H+ R +NS AD AN
Sbjct: 132 LHVRGDSELIVKQVRGEYNTNDPTLREKRVTVHELLTEFDEWTLEHVPREVNSRADELAN 191
>gi|77549440|gb|ABA92237.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1646
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ FDG+++ + GAG VL + G + + A++NVAEY AL+ GL+ A+ G
Sbjct: 1354 TMHFDGSNRLS--GTGAGVVLISLTGERLCYVLWIHFSASHNVAEYEALLHGLRIAISLG 1411
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N AD
Sbjct: 1412 IRRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDRLELTHVLRHNNEAADR 1471
Query: 194 QANMG 198
AN G
Sbjct: 1472 LANFG 1476
>gi|187251579|ref|YP_001876061.1| ribonuclease HI [Elusimicrobium minutum Pei191]
gi|186971739|gb|ACC98724.1| Ribonuclease HI [Elusimicrobium minutum Pei191]
Length = 194
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGV--GIATNNVAEYRALILGLKYAL 130
+ DG S+GNPG + V++ G ++ +EGV GI TNN AE++AL+ A
Sbjct: 3 VIINVDGGSRGNPGPGASAYVIKDAKGKII--AQEGVFLGICTNNEAEFKALLFAFGAAA 60
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ HI++ DS+L+ Q G +KI + NL + +E ++ + F S QI H+ R N E
Sbjct: 61 KLKATHIQIYADSQLLVKQFLGEYKIKSPNLVPIMEEIRKKAKPFSSVQIAHVPREKNKE 120
Query: 191 ADAQANMGI 199
AD AN+ +
Sbjct: 121 ADKLANIAM 129
>gi|355572032|ref|ZP_09043240.1| ribonuclease H [Methanolinea tarda NOBI-1]
gi|354825128|gb|EHF09363.1| ribonuclease H [Methanolinea tarda NOBI-1]
Length = 141
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKY 128
CY+ DGAS+GNPG A AG VL DG V+ + +G TNN AEY A+I L
Sbjct: 6 TCYT-----DGASRGNPGPAAAGFVLLDSDGRVLEKKAVFLGKKTNNEAEYHAVIKALAA 60
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQ 179
A + G +R+ DS+LV Q++G +++N L LC + ++K+ S +
Sbjct: 61 AKKHGAHRVRICSDSQLVIRQLRGEYRVNKPGLRELCARVRLCEQKYSSVE 111
>gi|365866951|ref|ZP_09406543.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. W007]
gi|364003576|gb|EHM24724.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. W007]
Length = 446
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 74/146 (50%), Gaps = 9/146 (6%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYA---L 130
+E DG S+GNPG AG GAV + G + E +G+ATNNVAEYR LI GL A
Sbjct: 3 VEADGGSRGNPGPAGYGAVVIDPATGEPLAETAEYIGVATNNVAEYRGLIAGLTAAKALF 62
Query: 131 QKGYKHIR--VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
+R V+ DSKLV Q+ G WKI + ++ L A + S I R N
Sbjct: 63 PDAGDALRVHVRMDSKLVVEQMSGRWKIKHPDMKPLAARAAAILPP-SSVTYEWIPRAQN 121
Query: 189 SEADAQANMGIYL-KDG-QVEAECSS 212
AD AN + +DG Q EA S+
Sbjct: 122 KHADRLANEAMDAGRDGRQWEASAST 147
>gi|31432019|gb|AAP53711.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1725
Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1219 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1273
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 1274 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNET 1333
Query: 191 ADAQANMG 198
A+ AN G
Sbjct: 1334 ANRLANFG 1341
>gi|406881392|gb|EKD29468.1| ribonuclease H [uncultured bacterium (gcode 4)]
Length = 133
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG ++ NPG AG G + DG V R + +GIATNN AEY+ + G++ ++ G + I
Sbjct: 8 DGWARNNPGPAGIGVYITDRDGRPVERRHKYLGIATNNQAEYQWALHGIRRGIELGAREI 67
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKE-AKELKEKFQSFQINHILRNLNSEADAQAN 196
+ DS+LV Q+ GL+KI N+ LA + E K + + + HI R N EAD +N
Sbjct: 68 DLYMDSQLVINQLAGLFKIKNKELAEIKFEIEKMITAWWGKIEFIHIPREHNKEADRLSN 127
Query: 197 MGI 199
+ +
Sbjct: 128 VAM 130
>gi|18266640|gb|AAL67586.1|AC018929_8 putative GAG-POL precursor [Oryza sativa Japonica Group]
gi|31433656|gb|AAP55140.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1099
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 526 TMHFDGSKRLT--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 580
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 581 SLSIRRLIVRGDSQLVVNQVMQEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEA 640
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 641 ADRLANFG 648
>gi|32488503|emb|CAE03255.1| OSJNBa0011J08.10 [Oryza sativa Japonica Group]
Length = 788
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG +L + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 427 TMHFDGSKRLT--GTGAGVILISPTGE---RLSYVLWIYFSASHNVAEYEALLHGLRIAI 481
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 482 SLGIRRLIVCGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEV 541
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 542 ADRLANFG 549
>gi|55168013|gb|AAV43881.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1551
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 8/130 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I ++NVAEY AL+ GL+ A+
Sbjct: 1165 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSVSHNVAEYEALLHGLRIAI 1219
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G +H+ V+GDS+LV Q+ W + N+ +E +L++KF ++ H+LR+ N
Sbjct: 1220 SLGIQHLIVRGDSQLVVNQVMKEWSCLDDNMTTYRQEVCKLEDKFDGLELTHVLRHNNEA 1279
Query: 191 ADAQANMGIY 200
AD AN +
Sbjct: 1280 ADKLANFAPF 1289
>gi|182439007|ref|YP_001826726.1| bifunctional RNase H/acid phosphatase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178467523|dbj|BAG22043.1| putative bifunctional ribonuclease H/phosphoglycerate mutase
[Streptomyces griseus subsp. griseus NBRC 13350]
Length = 441
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 73 CTLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLK---- 127
+E DG S+GNPG AG GAV + G + E +G+ATNNVAEYR LI GL
Sbjct: 7 VVVEADGGSRGNPGPAGYGAVVIDPATGEPLAEAAEYIGVATNNVAEYRGLIAGLTAAKA 66
Query: 128 -YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+ + V+ DSKLV Q+ G WKI + ++ L A + S I R
Sbjct: 67 LFPDAGDALRVHVRMDSKLVVEQMSGRWKIKHPDMKPLAARAAAVLPP-SSVTYEWIPRA 125
Query: 187 LNSEADAQANMGIYL-KDG-QVEAECSS 212
N AD AN + +DG Q EA S+
Sbjct: 126 QNKHADRLANEAMDAGRDGRQWEASAST 153
>gi|48475214|gb|AAT44283.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1741
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ FDG+ + + GAG L + G + + A++NVAEY AL+ GL+ A+ G
Sbjct: 1361 TMHFDGSKRLS--GTGAGGFLISPTGERLSYVLWIHFFASHNVAEYEALLHGLRIAISLG 1418
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+H+ V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+L + N AD
Sbjct: 1419 IRHLIVRGDSQLVVNQVMKEWSCLDDNMIAYRQEVRKLEDKFDGLELTHVLWHNNEAADR 1478
Query: 194 QANMG 198
AN G
Sbjct: 1479 LANFG 1483
>gi|71907016|ref|YP_284603.1| ribonuclease H [Dechloromonas aromatica RCB]
gi|71846637|gb|AAZ46133.1| Ribonuclease H [Dechloromonas aromatica RCB]
Length = 216
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 77 FDGASK-GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 135
FDGA+K NPG G G +L+ G + + E +G TNN AEY AL+ L A+ +
Sbjct: 10 FDGATKHTNPGIRGVGGLLKGPAGERI-EISEDIGEGTNNEAEYAALMAVLDAAVAAKVQ 68
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V GDS+LV Q+ G W IN + L +CK + L + + I R N+EADA
Sbjct: 69 DLIVYGDSQLVIKQVNGEWLINAKGLVPMCKTVRRLMAQIPKVSLAWIPREENTEADA 126
>gi|22795272|gb|AAN08244.1| GAG-POL precursor [Oryza sativa Japonica Group]
gi|31430777|gb|AAP52643.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1032
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + RL + I A++NVAEY AL+ GL+ A+
Sbjct: 459 TMHFDGSKRLS--GTGAGVVLISPTRE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 513
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 514 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEA 573
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 574 ADRLANFG 581
>gi|448728118|ref|ZP_21710450.1| ribonuclease H [Halococcus saccharolyticus DSM 5350]
gi|445797552|gb|EMA48023.1| ribonuclease H [Halococcus saccharolyticus DSM 5350]
Length = 197
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKY 128
+CY FDGAS+GNPG A G V+ +G +V E + TNN AEY AL+ L
Sbjct: 70 HCY-----FDGASRGNPGPAAIGWVIVTSEG-IVDEGSERIDDTTNNRAEYEALLRVLGV 123
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A + + V+GDS+LV Q++G W N L +EL + F + I H+ R N
Sbjct: 124 AREYDFGTADVRGDSQLVVEQVRGAWNTNEPALRERRVRVRELLDGFDDWSIEHVPREAN 183
Query: 189 SEADAQAN 196
AD AN
Sbjct: 184 DRADGLAN 191
>gi|38344494|emb|CAE05173.2| OSJNBa0013A04.10 [Oryza sativa Japonica Group]
Length = 1230
Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + G G VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1082 TMHFDGSKRLS--GTGVGVVLISPTGE---RLSYILWIHFSASHNVAEYEALLHGLRIAI 1136
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 1137 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMIAYRQEVRKLEDKFDGLELTHVLRHNNEA 1196
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1197 ADRLANFG 1204
>gi|326779661|ref|ZP_08238926.1| Phosphoglycerate mutase [Streptomyces griseus XylebKG-1]
gi|326659994|gb|EGE44840.1| Phosphoglycerate mutase [Streptomyces griseus XylebKG-1]
Length = 451
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 73 CTLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLK---- 127
+E DG S+GNPG AG GAV + G + E +G+ATNNVAEYR LI GL
Sbjct: 7 VVVEADGGSRGNPGPAGYGAVVIDPATGEPLAEAAEYIGVATNNVAEYRGLIAGLTAAKA 66
Query: 128 -YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+ + V+ DSKLV Q+ G WKI + ++ L A + S I R
Sbjct: 67 LFPDAGDALRVHVRMDSKLVVEQMSGRWKIKHPDMKPLAARAAAVLPP-SSVTYEWIPRA 125
Query: 187 LNSEADAQANMGIYL-KDG-QVEAECSS 212
N AD AN + +DG Q EA S+
Sbjct: 126 QNKHADRLANEAMDAGRDGRQWEASAST 153
>gi|312197342|ref|YP_004017403.1| phosphoglycerate mutase [Frankia sp. EuI1c]
gi|311228678|gb|ADP81533.1| Phosphoglycerate mutase [Frankia sp. EuI1c]
Length = 388
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREG-VGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GA++R D + R G +G+ATNNVAEY+ LI GL+ A +
Sbjct: 5 VVIEADGGSRGNPGPAGYGALVRDADSGALLAERAGAIGVATNNVAEYQGLIAGLRAAAE 64
Query: 132 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNL-AGLCKEAKELKEKFQSFQINHILRNLNS 189
+ V+ DSKLV Q+ G WKI + + + A+ + + + I R N
Sbjct: 65 VAPDADVEVRMDSKLVVEQMSGRWKIKHPAMRPLAAEAAELVAARPSPVRYRWIPRERNK 124
Query: 190 EAD 192
+AD
Sbjct: 125 DAD 127
>gi|284030531|ref|YP_003380462.1| phosphoglycerate mutase [Kribbella flavida DSM 17836]
gi|283809824|gb|ADB31663.1| Phosphoglycerate mutase [Kribbella flavida DSM 17836]
Length = 374
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG A GA++R + G V+ + +GIATNNVAEY LI GL+ A +
Sbjct: 6 VIVEADGGSRGNPGPAAYGALVRDPQTGEVIAQAGVTIGIATNNVAEYSGLIAGLELAAE 65
Query: 132 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
I V+ DSKLV Q+ G WK+ + ++ L +A+ L
Sbjct: 66 YAPDASIEVRMDSKLVVEQMAGRWKVKHPDMKPLAMKAQSL 106
>gi|50897347|gb|AAT85798.1| GAG-POL protein, putative [Oryza sativa Japonica Group]
gi|108709085|gb|ABF96880.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 403
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 241 TMHFDGSKRLT--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 295
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E +L+ KF ++ H+LR+ N
Sbjct: 296 CLGIRRLIVRGDSQLVVNQVMKEWSCPDDNMTAYRQEVHKLENKFDGLELTHVLRHNNEA 355
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 356 ADRLANFG 363
>gi|449482774|ref|XP_004156399.1| PREDICTED: uncharacterized protein LOC101232754 [Cucumis sativus]
Length = 796
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ FDGA + + AGAG VL + + ++ + +NNV EY+ALI+ L+ AL+ G
Sbjct: 224 TMYFDGADRRS--GAGAGIVLVSLEKHMLPYSFALSELCSNNVVEYQALIISLQIALEIG 281
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
I V GDSKL+ Q+ + + +++L A++L EKF S + H R N ADA
Sbjct: 282 VSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDSVMLEHFPRVENKRADA 341
Query: 194 QANMGIYL 201
AN+ L
Sbjct: 342 LANLATAL 349
>gi|116309689|emb|CAH66737.1| H0404F02.13 [Oryza sativa Indica Group]
Length = 749
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 347 TMHFDGSKRLR--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 401
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 402 SLGIRRLIVCGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEV 461
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 462 ADRLANFG 469
>gi|77556713|gb|ABA99509.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2003
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1544 TMHFDGSKRLT--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1598
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + ++GDS+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N
Sbjct: 1599 SLGIHRLIIRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEA 1658
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1659 ADRLANFG 1666
>gi|448358871|ref|ZP_21547545.1| ribonuclease H [Natrialba chahannaoensis JCM 10990]
gi|445644551|gb|ELY97564.1| ribonuclease H [Natrialba chahannaoensis JCM 10990]
Length = 197
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG ++GNPG AG G V+ +G +V + +G ATNN AEY ALI L+ A Y
Sbjct: 73 FDGGARGNPGPAGIGWVIVTSEG-IVAEGSKRIGRATNNQAEYEALIAALEAARDYDYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I V+GDS+L+ Q++G + NN L EL F + + H+ R +NS AD AN
Sbjct: 132 IHVRGDSELIVKQVRGEYNTNNPELRERRVTVHELLRAFDEWTLEHVPREVNSRADELAN 191
>gi|110289223|gb|AAP54205.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1734
Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 81 SKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQKGYKHI 137
SK GAG VL + G RL + + I A++NVAEY AL+ GL+ A+ G + +
Sbjct: 1195 SKTRLTGTGAGVVLISPTGE---RLSDVLWIHFSASHNVAEYEALLHGLRIAISLGIRRL 1251
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N AD AN
Sbjct: 1252 IVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAADRLANF 1311
Query: 198 G 198
G
Sbjct: 1312 G 1312
>gi|158316831|ref|YP_001509339.1| bifunctional RNase H/acid phosphatase [Frankia sp. EAN1pec]
gi|158112236|gb|ABW14433.1| Phosphoglycerate mutase [Frankia sp. EAN1pec]
Length = 378
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYA-- 129
+E DG S+GNPG AG GA++R A G V+ +G ATNNVAEY L+ GL+ A
Sbjct: 7 LVVEADGGSRGNPGPAGYGALVRDAGTGQVLAERAASIGTATNNVAEYEGLLAGLRAAAE 66
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
L G I V+ DSKLV Q+ G WKI + ++ L +A E+ + + R N
Sbjct: 67 LDPG-ADIEVRMDSKLVVEQMSGRWKIKHPSMRPLAAQAAEIAAGLGRVRFVWVPRARNG 125
Query: 190 EAD 192
+AD
Sbjct: 126 DAD 128
>gi|108710943|gb|ABF98738.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 952
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 444 TMHFDGSKRLT--GTGAGVVLISPTGE---RLSYVLWINFSASHNVAEYEALLHGLRIAI 498
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N
Sbjct: 499 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEA 558
Query: 191 ADAQANMG 198
D AN G
Sbjct: 559 DDRLANFG 566
>gi|398345071|ref|ZP_10529774.1| ribonuclease HI [Leptospira inadai serovar Lyme str. 10]
Length = 135
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 78 DGASKGNPGQAGAG-AVLRAED--GSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
DGASKGNPG + G A+ E+ S+ R+++G TNN AE+ AL GL + L+
Sbjct: 9 DGASKGNPGPSSIGVAIFEGEEEIHSISERIKDG----TNNTAEWAALEAGLLWCLENKA 64
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
++ DS+LV Q+ G +K+ + +L + L K SF+I H+LR N +AD
Sbjct: 65 SEVKAFLDSELVVKQVTGEYKVKSPHLIEAKRRVLALSSKLASFKIAHVLREKNKKADKL 124
Query: 195 ANMGI 199
AN+
Sbjct: 125 ANLAF 129
>gi|373252619|ref|ZP_09540737.1| ribonuclease HI [Nesterenkonia sp. F]
Length = 147
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-KG 133
+E DG S+GNPG AG+GA++R G V+ +G A+NNVAEY LI GL A +
Sbjct: 3 VEADGGSRGNPGIAGSGALVRDPSGRVLATRATPLGKASNNVAEYTGLIDGLTLAREIDP 62
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSEA 191
+ V+ DSKLV Q+ W+I ++++ L +A + S Q+ + I R N +A
Sbjct: 63 EAEVDVRLDSKLVVEQMSKRWRIKHEDMKRLAAQAAAI---LPSAQVRYTWIPRKENGDA 119
Query: 192 DAQAN 196
DA +N
Sbjct: 120 DALSN 124
>gi|62734207|gb|AAX96316.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77548941|gb|ABA91738.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1604
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1092 TMHFDGSKRLT--GTGAGVVLISPIGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1146
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + + +E ++L++KF ++ H+LR+ N
Sbjct: 1147 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDTMTAYRQEVRKLEDKFDGLELTHVLRHNNEA 1206
Query: 191 ADAQANMGIYLKDGQVEAECS 211
AD AN G + + CS
Sbjct: 1207 ADRLANFGSKREAAPSDQMCS 1227
>gi|289579996|ref|YP_003478462.1| ribonuclease H [Natrialba magadii ATCC 43099]
gi|448281234|ref|ZP_21472541.1| ribonuclease H [Natrialba magadii ATCC 43099]
gi|289529549|gb|ADD03900.1| ribonuclease H [Natrialba magadii ATCC 43099]
gi|445579164|gb|ELY33560.1| ribonuclease H [Natrialba magadii ATCC 43099]
Length = 197
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDG ++GNPG AG G V+ +G +V + +G ATNN AEY ALI L+ A Y
Sbjct: 73 FDGGARGNPGPAGIGWVIVTSEG-IVAEGSKRIGRATNNQAEYEALIAALEAARDYDYDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I V+GDS+L+ Q++G + NN L EL F + + H+ R +NS AD AN
Sbjct: 132 IHVRGDSELIVKQVRGEYNTNNPELRERRVTVHELLRAFDEWTLEHVPREVNSRADELAN 191
>gi|29788858|gb|AAP03404.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 930
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 422 TMHFDGSKRLT--GTGAGVVLISPTGE---RLSYVLWINFSASHNVAEYEALLHGLRIAI 476
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N
Sbjct: 477 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEA 536
Query: 191 ADAQANMG 198
D AN G
Sbjct: 537 DDRLANFG 544
>gi|41469126|gb|AAS07077.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108708814|gb|ABF96609.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 516
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ L+ A+
Sbjct: 201 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHRLRIAI 255
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 256 SLGIRRLIVRGDSQLVVNQVMKKWSCLDDNMTAYRQEVRKLEDKFDGLELAHVLRHNNEA 315
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 316 ADRLANFG 323
>gi|77551287|gb|ABA94084.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1756
Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++NV EY AL+ GL+ A+
Sbjct: 1232 TMHFDGSKRLT--GTGAGVVLISLTGE---RLSYVLWIHFSASHNVVEYEALLHGLRIAV 1286
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 1287 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLKLTHVLRHNNEA 1346
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1347 ADRLANFG 1354
>gi|116309190|emb|CAH66285.1| OSIGBa0161P06.2 [Oryza sativa Indica Group]
Length = 1987
Score = 76.3 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1414 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFPASHNVAEYEALLHGLRIAI 1468
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++ +LR+ N
Sbjct: 1469 SLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSLVLRHNNEA 1528
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1529 ADRLANFG 1536
>gi|239917465|ref|YP_002957023.1| ribonuclease HI [Micrococcus luteus NCTC 2665]
gi|239838672|gb|ACS30469.1| ribonuclease HI [Micrococcus luteus NCTC 2665]
Length = 322
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG GA++R G ++ +G A+NNVAEY L+ GL+ A
Sbjct: 1 MEADGGSRGNPGVAGYGALVRDPATGEILRTDAAPLGKASNNVAEYSGLVAGLRMARDLD 60
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKE-LKEKFQSFQINHILRNLNSEA 191
+ V DSKLV Q+ G WKI + ++ L EA+ L + S++ I RN N +A
Sbjct: 61 PEARVHVLMDSKLVVEQMSGRWKIKHDDMRRLAAEARSVLPPERVSYEW--IPRNRNKDA 118
Query: 192 DAQAN--MGIYLKDGQVEAECS 211
D +N M + GQ +A S
Sbjct: 119 DRLSNEAMDAGARGGQWDAGAS 140
>gi|448298664|ref|ZP_21488692.1| ribonuclease H [Natronorubrum tibetense GA33]
gi|445591334|gb|ELY45540.1| ribonuclease H [Natronorubrum tibetense GA33]
Length = 197
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGA +GNPG A G V+ + DG +V E +G ATNN AEY ALI L+ A G+
Sbjct: 73 FDGACRGNPGPAATGWVIVSGDG-IVAEGGERIGTATNNQAEYEALIAALEAAKDYGFDE 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+GDS+L+ Q++G + NN L EL F + + H+ R +N AD AN
Sbjct: 132 LHVRGDSELIVKQVRGEYDTNNPELREKRVTVHELLAAFDEWTLEHVPREVNDRADDLAN 191
>gi|54287555|gb|AAV31299.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54291738|gb|AAV32107.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1857
Score = 76.3 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GA VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1284 TMHFDGSKRLT--GTGARVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1338
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 1339 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEA 1398
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1399 ADRLANFG 1406
>gi|77554253|gb|ABA97049.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1399
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FD + + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1218 TMHFDESKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1272
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E +L++KF ++ H+LR+ N
Sbjct: 1273 SLGIRRLTVRGDSQLVVNQVMKEWSCLHDNMTAYRQEVGKLEDKFDGLELTHVLRHNNEA 1332
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1333 ADRLANFG 1340
>gi|38345918|emb|CAE04522.2| OSJNBb0076A11.6 [Oryza sativa Japonica Group]
Length = 1453
Score = 75.9 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ FDG+ + A A VL + G + + + A++NVAEY AL+ GL+ A+ G
Sbjct: 902 TIHFDGSKRLT--GAEARVVLISPTGERLSYVLQIHFSASHNVAEYEALLHGLRIAISLG 959
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N AD
Sbjct: 960 IRQLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAADR 1019
Query: 194 QANMG 198
AN G
Sbjct: 1020 LANFG 1024
>gi|108862665|gb|ABA98419.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1316
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1148 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYAALLHGLRIAI 1202
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E +L++KF ++ H+LR+ N
Sbjct: 1203 CLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVCKLEDKFDGLELTHVLRHNNEA 1262
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1263 ADRLANFG 1270
>gi|108709395|gb|ABF97190.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1773
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1267 TMHFDGSKRLT--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1321
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+L Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 1322 SLGIRRLIVRGDSQLGVNQVTKEWSCLDVNMTAYRQEVRKLEDKFDGLELTHVLRHNNEA 1381
Query: 191 ADAQANMGIYLK 202
AD AN G L+
Sbjct: 1382 ADRLANFGSKLE 1393
>gi|77550752|gb|ABA93549.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1000
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG SK G AG VL + G RL + I A++NVAEY AL+ GL A+
Sbjct: 459 TMHFDG-SKRLSGTV-AGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLWIAI 513
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L+ KF +++H+LR+ N
Sbjct: 514 SLGIKRLIVRGDSQLVVNQVMKKWSCLDDNMTAYRQEVRKLESKFDGLELSHVLRHNNEA 573
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 574 ADRLANFG 581
>gi|397780724|ref|YP_006545197.1| ribonuclease HI [Methanoculleus bourgensis MS2]
gi|396939226|emb|CCJ36481.1| ribonuclease HI [Methanoculleus bourgensis MS2]
Length = 141
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+ TL DGAS+GNPG A V+ ++G++ +G ATNNVAEY A+I GL+ A
Sbjct: 6 TVTLYTDGASRGNPGDAAWAYVI-VQEGAIAASRSGYIGKATNNVAEYHAVINGLRAARA 64
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
+RV+ DS+LV Q+ G ++I ++LA L E ++L F + + R
Sbjct: 65 FTEGRLRVRSDSELVVRQLTGRYRIRKEHLAVLAGEVQQLARNFAEVRFESVPR 118
>gi|332706320|ref|ZP_08426383.1| riibonuclease HI [Moorea producens 3L]
gi|332354869|gb|EGJ34346.1| riibonuclease HI [Moorea producens 3L]
Length = 138
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
+ FDG SK Q+ GA+++ + VY + + VG T N EY LILGL+ L+ G
Sbjct: 11 IHFDGVSKRRTNQSACGAIIQYQ--GEVYPVSQYVGFTTQNQTEYMGLILGLQKTLKLGA 68
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
K ++ GD +LV Q+ G + + N NL AK L +K +++ I + N EAD
Sbjct: 69 KQAKIYGDCELVINQLHGDYMVKNNNLVSFHTRAKTLLDKLDFYELIWINKTQNLEADQL 128
Query: 195 AN 196
AN
Sbjct: 129 AN 130
>gi|33113963|gb|AAP94585.1| putative gag-pol precursor [Zea mays]
Length = 1833
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 64 QSVPYNCYSCT---LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYR 120
Q VP N + + FDG+ K AGAG + A G + + + A+NN AEY
Sbjct: 1287 QQVPDNPETTEVWRMYFDGSLKLQ--GAGAGILFTAPGGEHLKYALQLLFPASNNAAEYE 1344
Query: 121 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 180
ALI GL A+ G K + V GDS +V QI W ++ ++ C ++L++KF+ +
Sbjct: 1345 ALIHGLNIAISLGVKRLMVYGDSLVVISQINKEWDCSSDSMGKYCTAVRKLEDKFEGLEF 1404
Query: 181 NHILRNLNSEADAQANMG 198
+HI R+ N+ AD + +G
Sbjct: 1405 HHIERDRNTAADILSKLG 1422
>gi|145539484|ref|XP_001455432.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423240|emb|CAK88035.1| unnamed protein product [Paramecium tetraurelia]
Length = 754
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Query: 67 PYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGL 126
P N Y TL FDGASK NPG AGAG L + + + + +G TNNVAE+ AL LG+
Sbjct: 617 PDNLY--TLYFDGASKSNPGPAGAGVAL-FDKMQQIKEITQPLGKQTNNVAEFLALFLGI 673
Query: 127 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+Y L G ++ GDSKL+ + Q+L + + + F+ + HI RN
Sbjct: 674 RYTLNLGINYLECFGDSKLIIDGMNNKINFKQQHLEDIRVAIYDYAQLFKMVRYTHISRN 733
Query: 187 LNSEADAQA 195
N AD A
Sbjct: 734 QNEIADKLA 742
>gi|406575349|ref|ZP_11051055.1| phosphoglycerate mutase [Janibacter hoylei PVAS-1]
gi|404555267|gb|EKA60763.1| phosphoglycerate mutase [Janibacter hoylei PVAS-1]
Length = 373
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG GA++R G + L +G A+NNVAEYR +I GL A
Sbjct: 6 VEADGGSRGNPGIAGYGALVRDTATGERLVELAAPLGTASNNVAEYRGMIAGLTAARSIA 65
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ----SFQINHILRNLN 188
I V DSKLV Q+ G W+I + ++ L +A+++ + S + + R N
Sbjct: 66 ADAQIVVAMDSKLVVEQMAGRWRIKHPDMRELALQARDVVAEITAAGGSVEWVWVPRADN 125
Query: 189 SEADAQANMGI 199
+ADA +N G+
Sbjct: 126 DDADALSNRGM 136
>gi|116308914|emb|CAH66045.1| OSIGBa0107A02.6 [Oryza sativa Indica Group]
Length = 1009
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + G G VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 861 TMHFDGSKRLS--GTGVGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 915
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 916 SLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMIAYRQEVRKLEDKFDGLELTHVLRHNNEA 975
Query: 191 ADAQANMG 198
A+ AN G
Sbjct: 976 ANRLANFG 983
>gi|40538963|gb|AAR87220.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|50582686|gb|AAT78756.1| putative retrotansposon gag protein [Oryza sativa Japonica Group]
gi|108709732|gb|ABF97527.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1389
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1102 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1156
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + V+GDS+LV Q+ W + N+ +E ++L+++F ++ H+LR+ N
Sbjct: 1157 SLGIWRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDRFDGLELTHVLRHNNEA 1216
Query: 191 ADAQANMG 198
AD N G
Sbjct: 1217 ADRLDNFG 1224
>gi|281414044|ref|ZP_06245786.1| ribonuclease HI [Micrococcus luteus NCTC 2665]
Length = 329
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG GA++R G ++ +G A+NNVAEY L+ GL+ A
Sbjct: 8 VEADGGSRGNPGVAGYGALVRDPATGEILRTDAAPLGKASNNVAEYSGLVAGLRMARDLD 67
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKE-LKEKFQSFQINHILRNLNSEA 191
+ V DSKLV Q+ G WKI + ++ L EA+ L + S++ I RN N +A
Sbjct: 68 PEARVHVLMDSKLVVEQMSGRWKIKHDDMRRLAAEARSVLPPERVSYEW--IPRNRNKDA 125
Query: 192 DAQAN--MGIYLKDGQVEAECS 211
D +N M + GQ +A S
Sbjct: 126 DRLSNEAMDAGARGGQWDAGAS 147
>gi|359689576|ref|ZP_09259577.1| ribonuclease HI [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418749473|ref|ZP_13305761.1| ribonuclease HI [Leptospira licerasiae str. MMD4847]
gi|418759219|ref|ZP_13315399.1| ribonuclease HI [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|384113710|gb|EID99974.1| ribonuclease HI [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|404274358|gb|EJZ41676.1| ribonuclease HI [Leptospira licerasiae str. MMD4847]
Length = 131
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG + G + E+ + ++ + + TNN+AE+ AL G++Y L +G I
Sbjct: 9 DGASKGNPGPSSIGVAVYEEE-TEIHSISSRISDGTNNMAEWAALEAGIEYCLSQGAGEI 67
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
DS+LV Q +G +++ + +L ++ K L K + F I H+ R N AD AN+
Sbjct: 68 TAYLDSELVVKQFKGEYRVKSPHLQIAKEKVKALTSKLKLFTIYHVPREKNKRADKLANL 127
Query: 198 GI 199
Sbjct: 128 AF 129
>gi|222625223|gb|EEE59355.1| hypothetical protein OsJ_11444 [Oryza sativa Japonica Group]
Length = 350
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 74/148 (50%), Gaps = 20/148 (13%)
Query: 58 DSCLNTQSVPYNCYSCTLE------FDGASK------GNP-GQAGAGAVLRAEDGSVVYR 104
DS L T+ + ++ E FDGAS+ G P +AGAG V + G V+Y
Sbjct: 93 DSPLITELPDEDVFTIETEPSWELCFDGASRTENDRDGTPRKRAGAGLVFKTPQGGVIYH 152
Query: 105 ----LREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQN 160
L+E +NN AEY ALI GL AL + IRV GDS+L+ QI ++++ Q
Sbjct: 153 SFSLLKEE---CSNNEAEYEALIFGLLLALSMEVRSIRVYGDSQLIVQQINDIYEVLKQE 209
Query: 161 LAGLCKEAKELKEKFQSFQINHILRNLN 188
L A+ L E F ++ H+ R+ N
Sbjct: 210 LVPYYSAARRLMEMFGHIEVMHVPRSRN 237
>gi|145590536|ref|YP_001152538.1| ribonuclease H [Pyrobaculum arsenaticum DSM 13514]
gi|145282304|gb|ABP49886.1| ribonuclease H [Pyrobaculum arsenaticum DSM 13514]
Length = 199
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Query: 73 CTLEFDGASKG-NPGQAGA-GAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALI 123
C DGA + NPG G G V+ AE +V EG+G+A TNNVAEY+A+I
Sbjct: 9 CVAYVDGACEPVNPGGVGGYGFVIYAEGRAVA----EGLGVACCCTALCTNNVAEYKAVI 64
Query: 124 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 183
L+ A + G + ++++ DS+LV Q+ G+++++ +LA L +E K +F F +
Sbjct: 65 AALRRAAELGCRSVKIRSDSQLVVYQLTGVYRVHAPHLAELLEEVKRATSQFAEFSAEWV 124
Query: 184 LRNLNSEADAQANMGI--YLKDGQ 205
R N AD + + I +++D +
Sbjct: 125 PRERNKRADRLSKLAICRHIRDDE 148
>gi|172055036|ref|YP_001806363.1| hypothetical protein cce_4951 [Cyanothece sp. ATCC 51142]
gi|354555210|ref|ZP_08974512.1| ribonuclease H [Cyanothece sp. ATCC 51472]
gi|171701317|gb|ACB54297.1| hypothetical protein cce_4951 [Cyanothece sp. ATCC 51142]
gi|353552801|gb|EHC22195.1| ribonuclease H [Cyanothece sp. ATCC 51472]
Length = 256
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 69/126 (54%), Gaps = 2/126 (1%)
Query: 75 LEFDGAS-KGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
L FDG + NPG G GAV+ E+ + G I TNN AEY LILGL+ AL+
Sbjct: 10 LYFDGGTFPLNPGHGGCGAVIIQENDEQSFSKYLGENI-TNNQAEYGGLILGLEKALEMN 68
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ V+GDS+LV Q+ G ++ N L L ++A L ++F+ + I R +N +ADA
Sbjct: 69 ISSLEVKGDSELVICQVIGSYRCRNSGLRPLHRQAISLAKQFEHIHFDWIPREINKKADA 128
Query: 194 QANMGI 199
A I
Sbjct: 129 AATEAI 134
>gi|77556935|gb|ABA99731.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1752
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A+++VAEY AL+ GL+ A+
Sbjct: 1354 TMHFDGSKRLT--GTGAGVVLISPTGE---RLGYVLWIPFSASHDVAEYEALLHGLRIAI 1408
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V GDS+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N
Sbjct: 1409 SLGIRRLIVLGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEA 1468
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1469 ADRLANFG 1476
>gi|62732811|gb|AAX94930.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77550198|gb|ABA92995.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1765
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 8/127 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQ 131
+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1168 MHFDGSKRLT--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1222
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + + V+GDS+LV Q+ W + N+ +E ++L+ KF ++ H+L++ N A
Sbjct: 1223 LGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLQHNNKAA 1282
Query: 192 DAQANMG 198
D AN G
Sbjct: 1283 DRLANFG 1289
>gi|406959498|gb|EKD86826.1| Ribonuclease H [uncultured bacterium]
Length = 146
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK----- 132
DG S+GNPG A G + E G V+ + + +GI TNN+AEY A++ L + L++
Sbjct: 12 DGGSRGNPGPAALGVHIENEKGEVLGEIGKILGITTNNIAEYSAIVAALSWVLERINEMP 71
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ-SFQINHILRNLNSEA 191
I DS L Q+ GL+KI N NL L AKE + + + +HI R N +A
Sbjct: 72 TLVRINFFMDSNLAASQLNGLYKIKNANLRTLYFLAKEKEAEIKIPIYYSHIPREENKKA 131
Query: 192 DAQANMGI 199
D NM +
Sbjct: 132 DRLVNMAL 139
>gi|108864374|gb|ABA93602.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1761
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 56/87 (64%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
A++NVAEY AL+ GL+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L
Sbjct: 1224 ASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKL 1283
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
++KF +++H+LR+ N AD AN G
Sbjct: 1284 EDKFDGLELSHVLRHNNEAADRLANFG 1310
>gi|168057029|ref|XP_001780519.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667997|gb|EDQ54613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 417
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 4/136 (2%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE--GVGIATNNVAEYRALILGLKYALQ 131
L FDGAS+ G G V++ G VV +RE G GI++ +A+Y+AL+ GLK A
Sbjct: 55 VLYFDGASRKPSAHGGLGVVIKNSKGQVVEEVREFLGGGISSG-LAKYKALLAGLKKANS 113
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
KH+ V+G+S+L+ Q+ G W I + +L K+ + ++F S + I ++ N+ A
Sbjct: 114 LQVKHLLVKGNSQLLINQVVGRWTIKDTHLRDHLKKVWAISKEFDSLLMEFISKDQNTHA 173
Query: 192 DAQANMGIYLKDGQVE 207
AN I KD Q++
Sbjct: 174 GRIANEAID-KDLQIQ 188
>gi|62734445|gb|AAX96554.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77550443|gb|ABA93240.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1701
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ DG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1177 TMHLDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1231
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+ DS+LV Q+ W + N+ +E ++L+ KF +++H+LR+ N
Sbjct: 1232 SLGIKRLIVRRDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLESKFAGLELSHVLRHNNEA 1291
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1292 ADRLANFG 1299
>gi|452206209|ref|YP_007486331.1| ribonuclease H, type 1 [Natronomonas moolapensis 8.8.11]
gi|452082309|emb|CCQ35563.1| ribonuclease H, type 1 [Natronomonas moolapensis 8.8.11]
Length = 196
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G V+ +DG +V E +G ATNN AEY AL+ L+ A G++
Sbjct: 73 FDGASRGNPGPAAIGWVIVTDDG-IVAEGSERIGRATNNQAEYEALLAALEAATDYGFED 131
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ ++GDS+L+ Q++G W N+ L +EL + ++H+ R +N AD AN
Sbjct: 132 LVIKGDSQLIVKQVRGEWDANDPTLREKRVRVRELLRGVDEWSLDHVPREINDRADGLAN 191
>gi|110288557|gb|ABB46646.2| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 574
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 8/127 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
+ T+ FDGA N AGAG +L A G + + + + ATNN AEY L++GL+
Sbjct: 128 TWTMAFDGAF--NSQGAGAGFILTAPTGD---QFKHAIHLDFRATNNTAEYEGLLVGLRA 182
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A+ G K + V+ DS+LV Q+ +K +N L E ++L+ KF ++ H+ R +
Sbjct: 183 AIALGVKRLIVKRDSELVTNQVHKDYKCSNPKLTKYLAEVRKLERKFDGLEVRHVYRKDS 242
Query: 189 SEADAQA 195
E DA A
Sbjct: 243 VEPDALA 249
>gi|415885233|ref|ZP_11547161.1| ribonuclease H [Bacillus methanolicus MGA3]
gi|387590902|gb|EIJ83221.1| ribonuclease H [Bacillus methanolicus MGA3]
Length = 129
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS G PG +GAG ++ G V R +G+ TN+ AE+ ALI ++ ++KGY+
Sbjct: 6 FDGASAGTPGPSGAGIFIKT--GGNVERYSIPLGLMTNHEAEFHALIKAMEICIEKGYRT 63
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ + DS+LV I+ + + N+N A L ++ +L ++F F + I + N AD A
Sbjct: 64 VSFRTDSELVNRAIEKEF-VKNKNFAPLLEKILKLSDQFDLFFMKWIPSSENKTADILAR 122
Query: 197 MGI 199
M +
Sbjct: 123 MAV 125
>gi|32490368|emb|CAE05042.1| OSJNBa0049H08.3 [Oryza sativa Japonica Group]
gi|38346750|emb|CAD40760.2| OSJNBa0081G05.13 [Oryza sativa Japonica Group]
Length = 1065
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 12/130 (9%)
Query: 74 TLEFDGASK--GNPGQAGAGAVLRAEDG---SVVYRLREGVGIATNNVAEYRALILGLKY 128
T+ FDG+ + GN GA VL + G S V +R A++NVAEY L+ GL+
Sbjct: 685 TMHFDGSKRLSGN----GARVVLISPTGERLSYVLWIRFS---ASHNVAEYEVLLHGLRI 737
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A+ G + + V+GDS+LV Q+ W + N+ +E ++L+++F ++ H+LR+ N
Sbjct: 738 AISLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDRFDGLELTHVLRHNN 797
Query: 189 SEADAQANMG 198
AD AN G
Sbjct: 798 EVADRLANFG 807
>gi|116309612|emb|CAH66667.1| OSIGBa0110B10.4 [Oryza sativa Indica Group]
Length = 1065
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 12/130 (9%)
Query: 74 TLEFDGASK--GNPGQAGAGAVLRAEDG---SVVYRLREGVGIATNNVAEYRALILGLKY 128
T+ FDG+ + GN GA VL + G S V +R A++NVAEY L+ GL+
Sbjct: 685 TMHFDGSKRLSGN----GARVVLISPTGERLSYVLWIRFS---ASHNVAEYEVLLHGLRI 737
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A+ G + + V+GDS+LV Q+ W + N+ +E ++L+++F ++ H+LR+ N
Sbjct: 738 AISLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDRFDGLELTHVLRHNN 797
Query: 189 SEADAQANMG 198
AD AN G
Sbjct: 798 EVADRLANFG 807
>gi|289706127|ref|ZP_06502498.1| ribonuclease HI [Micrococcus luteus SK58]
gi|289557160|gb|EFD50480.1| ribonuclease HI [Micrococcus luteus SK58]
Length = 329
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG GA++R G ++ +G A+NNVAEY L+ GL+ A
Sbjct: 8 VEADGGSRGNPGVAGYGALVRDPATGEILRTDAAPLGKASNNVAEYSGLVAGLRMARDLD 67
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ V DSKLV Q+ G WKI ++++ L EA+ + + I RN N +AD
Sbjct: 68 PEARVHVLMDSKLVVEQMSGRWKIKHEDMRRLAAEARSVLPP-ERVTYEWIPRNRNKDAD 126
Query: 193 AQAN 196
+N
Sbjct: 127 RLSN 130
>gi|291287654|ref|YP_003504470.1| ribonuclease H [Denitrovibrio acetiphilus DSM 12809]
gi|290884814|gb|ADD68514.1| ribonuclease H [Denitrovibrio acetiphilus DSM 12809]
Length = 133
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA +GNPG AG G ++ A DG + + +G ATNN+AEY AL++ K + + +
Sbjct: 9 DGACRGNPGPAGCGYIIYA-DGQEIASGTKFIGTATNNLAEYNALLVAAKDPILNQFDKL 67
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGL-CKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
DS+LV Q++G +K+ N+ L + + K L K +F NH+ R N EAD AN
Sbjct: 68 NFYLDSELVVKQMKGEYKLKNEGLIPVKLQIDKVLNGKQVTF--NHVPRAQNKEADKLAN 125
Query: 197 MGI 199
M I
Sbjct: 126 MAI 128
>gi|77555134|gb|ABA97930.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 285
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FD SK G A AG VL + G RLR + I A++NV EY AL+ GL A+
Sbjct: 41 TMHFD-RSKRLLGTA-AGVVLISPTGE---RLRYVLWIHFSASHNVVEYEALLHGLWIAI 95
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N
Sbjct: 96 SLGIRRLIVHGDSQLVVNQVMKEWSCLDDNMIAYRQEVRKLEDKFNGLELTHVLRHNNEA 155
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 156 ADRLANFG 163
>gi|18997217|gb|AAL83334.1|AC074282_1 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|20042895|gb|AAM08723.1|AC116601_16 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 489
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 8/128 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
+ T+ FDGA N AGAG +L A G + + + + ATNN AEY L++GL+
Sbjct: 128 TWTMAFDGAF--NSQGAGAGFILTAPTGD---QFKHAIHLDFRATNNTAEYEGLLVGLRA 182
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A+ G K + V+ DS+LV Q+ +K +N L E ++L+ KF ++ H+ R +
Sbjct: 183 AIALGVKRLIVKRDSELVTNQVHKDYKCSNPKLTKYLAEVRKLERKFDGLEVRHVYRKDS 242
Query: 189 SEADAQAN 196
E DA A
Sbjct: 243 VEPDALAR 250
>gi|448377484|ref|ZP_21560180.1| ribonuclease H [Halovivax asiaticus JCM 14624]
gi|445655428|gb|ELZ08273.1| ribonuclease H [Halovivax asiaticus JCM 14624]
Length = 197
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L +DG S+GNPG AG G VL DG +V + +G ATNN AEY ALI L+ A + G+
Sbjct: 71 LYWDGGSRGNPGPAGIGWVLVTSDG-IVAEGSDTIGEATNNQAEYEALIAALEAAREYGF 129
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ +GDS+L+ Q+ G + N+ L A E F + I H+ R N AD
Sbjct: 130 DEVHCRGDSELIVKQVTGAYDTNDPVLREKRVTAVEHLSSFDEWTIEHVPREANEHADDL 189
Query: 195 AN 196
AN
Sbjct: 190 AN 191
>gi|15217332|gb|AAK92670.1|AC090714_3 putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1262
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Query: 72 SCTLEFDGASK------GNP-GQAGAGAVLRAEDGSVVYR----LREGVGIATNNVAEYR 120
S L FDGAS+ G P +AGAG V + G V+Y L+E +NN AEY
Sbjct: 735 SWELCFDGASRTENDRDGTPRKRAGAGLVFKTPQGGVIYHSFSLLKEE---CSNNEAEYE 791
Query: 121 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 180
ALI GL AL + IRV GDS+L+ QI ++++ Q L A+ L E F ++
Sbjct: 792 ALIFGLLLALSMEVRSIRVYGDSQLIVQQINDIYEVLKQELVPYYSAARRLMEMFGHIEV 851
Query: 181 NHILRNLN 188
H+ R+ N
Sbjct: 852 MHVPRSRN 859
>gi|359145028|ref|ZP_09178858.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. S4]
Length = 369
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-K 132
+E DG S+GNPG AG GAV+ A G + +G ATNN AEYR LI GL+ A
Sbjct: 6 VEADGGSRGNPGPAGYGAVVVDAATGETLTETAAFLGTATNNTAEYRGLIAGLRAARDLD 65
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ V+ DSKLV Q+ G W+I + L L EA + Q + I R N AD
Sbjct: 66 PEARVEVRMDSKLVVEQMAGRWRIKHPGLQELAAEAAGILAPDQVTYV-WIPRAENQHAD 124
Query: 193 AQAN 196
AN
Sbjct: 125 RLAN 128
>gi|108709306|gb|ABF97101.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1269
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Query: 72 SCTLEFDGASK------GNP-GQAGAGAVLRAEDGSVVYR----LREGVGIATNNVAEYR 120
S L FDGAS+ G P +AGAG V + G V+Y L+E +NN AEY
Sbjct: 742 SWELCFDGASRTENDRDGTPRKRAGAGLVFKTPQGGVIYHSFSLLKEE---CSNNEAEYE 798
Query: 121 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 180
ALI GL AL + IRV GDS+L+ QI ++++ Q L A+ L E F ++
Sbjct: 799 ALIFGLLLALSMEVRSIRVYGDSQLIVQQINDIYEVLKQELVPYYSAARRLMEMFGHIEV 858
Query: 181 NHILRNLN 188
H+ R+ N
Sbjct: 859 MHVPRSRN 866
>gi|336325273|ref|YP_004605239.1| ribonuclease HI [Corynebacterium resistens DSM 45100]
gi|336101255|gb|AEI09075.1| ribonuclease HI [Corynebacterium resistens DSM 45100]
Length = 382
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 73/146 (50%), Gaps = 18/146 (12%)
Query: 75 LEFDGASKGNPGQAGAGA-------VLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
LE DG S+GNPG AGAG+ +R E + + E + ATNNVAEY L+ GLK
Sbjct: 5 LECDGGSRGNPGVAGAGSSIVDAASAVRGEKRELAAQW-EHLDKATNNVAEYHGLVNGLK 63
Query: 128 YALQKGYKH--------IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQ 179
A + K + V DSKL+ Q+ G WKI + ++ L +A+EL F +
Sbjct: 64 LAAEVASKQGEKPSDVELDVFMDSKLIVEQMSGRWKIKHPDMKPLAAKAQELGAVFAAVN 123
Query: 180 INHILRNLNSEADAQANMGIYLKDGQ 205
+ R N AD AN + DG+
Sbjct: 124 YTWVPRAQNKRADELANRA--MDDGE 147
>gi|291451062|ref|ZP_06590452.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291354011|gb|EFE80913.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 412
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 54 HLNADSCLNTQSVPYN-----CYSCTLEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLRE 107
H A L PY +E DG S+GNPG AG GAV+ A G +
Sbjct: 23 HRAALRELPPHPRPYGRLGRLMRQFAVEADGGSRGNPGPAGYGAVVVDAATGETLTETAG 82
Query: 108 GVGIATNNVAEYRALILGLKYALQ-KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCK 166
+G ATNN AEYR LI GL+ A + V+ DSKLV Q+ G W+I + L L
Sbjct: 83 FLGTATNNTAEYRGLIAGLRAARDLDPEARVEVRMDSKLVVEQMAGRWRIKHPGLQELAA 142
Query: 167 EAKELKEKFQSFQINHILRNLNSEADAQAN 196
EA + Q + I R N +AD AN
Sbjct: 143 EAAGILAPDQVTYV-WIPRAENQQADRLAN 171
>gi|395769907|ref|ZP_10450422.1| bifunctional RNase H/acid phosphatase [Streptomyces acidiscabies
84-104]
Length = 442
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 70/130 (53%), Gaps = 11/130 (8%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREG-VGIATNNVAEYRALILGLK--YA 129
+E DG S+GNPG AG GAV+ D + R G +G+ATNNVAEY L+ G + +A
Sbjct: 23 LVIEADGGSRGNPGPAGYGAVVADADTGELLAERSGFLGVATNNVAEYNGLLAGARAAHA 82
Query: 130 LQKGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRN 186
L H+R+ DSKLV Q+ G W+I + L L EA L ++++ I R
Sbjct: 83 LNPSAAVHVRM--DSKLVVEQMSGRWQIKHPALRPLAIEAARL---LPGDRVSYEWIPRA 137
Query: 187 LNSEADAQAN 196
N AD AN
Sbjct: 138 QNKRADRLAN 147
>gi|373856555|ref|ZP_09599299.1| ribonuclease H [Bacillus sp. 1NLA3E]
gi|372453534|gb|EHP27001.1| ribonuclease H [Bacillus sp. 1NLA3E]
Length = 128
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS GNPG +GAG ++ V+ + +GI +N+ AEYRA I GLK ++KGY+ +
Sbjct: 7 DGASAGNPGPSGAGIFIKG--NGVLEKYSIPLGIMSNHEAEYRAFIEGLKICIEKGYQIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N Q+ A L + A EL +F+ F + I N +AD A
Sbjct: 65 SFRTDSELVNRSVEKEFAKNKQH-APLLETALELTREFELFFMKWIPSRQNKQADELARA 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|19551096|gb|AAL91601.1|AC099400_7 Putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1416
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 20/126 (15%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIAT-NNVAEYRALILGLKYALQK 132
T+ FDG+ + G GA G+ +T +NVAEY AL+ GL+ A+
Sbjct: 1120 TMHFDGSKR----LTGTGA---------------GIHFSTSHNVAEYEALLHGLRIAISL 1160
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N AD
Sbjct: 1161 GIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAAD 1220
Query: 193 AQANMG 198
AN G
Sbjct: 1221 RLANFG 1226
>gi|38347265|emb|CAE05312.2| OSJNBa0056L23.10 [Oryza sativa Japonica Group]
Length = 867
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + +AG + E+ RL + I ++NVAEY L+ GL+ +
Sbjct: 316 TMHFDGSKRLSGTRAGVVLISPTEE-----RLSYVLWIHFSTSHNVAEYEVLLHGLRIVI 370
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N
Sbjct: 371 SLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMTAYRQEVRKLEDKFDGLELSHVLRHNNEA 430
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 431 ADRLANFG 438
>gi|32480044|emb|CAE01788.1| OSJNBa0039K24.7 [Oryza sativa Japonica Group]
Length = 1818
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 172
++NVAEY AL+ GL+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L+
Sbjct: 1394 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLE 1453
Query: 173 EKFQSFQINHILRNLNSEADAQANMG 198
+KF +++H+LR+ N AD AN G
Sbjct: 1454 DKFDGLELSHVLRHNNEAADRLANFG 1479
>gi|294868378|ref|XP_002765508.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239865551|gb|EEQ98225.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 368
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 77/148 (52%), Gaps = 15/148 (10%)
Query: 64 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGS------VVYRLREGVGIATNNVA 117
QS P N + L FDG S+G AG+GAVL +DG+ + L+ G G TNN A
Sbjct: 210 QSTPSNLPNLMLTFDGGSQGGQSSAGSGAVLYRKDGNGRFDEIAAWSLKLGPG-RTNNEA 268
Query: 118 EYRALILGLKY--ALQKGYKHIRVQGDSKLVCMQI-QGLWKINNQNLAGLCKEAKE---- 170
EY AL +GL L + ++ +QGDSKLV Q+ WK+N + L L + A++
Sbjct: 269 EYEALCMGLDKINELIEEPANLTIQGDSKLVISQMGPSQWKVNKEELRQLKERAEQAIHG 328
Query: 171 LKEKFQSFQINHILRNLNSEADAQANMG 198
L ++ Q I H LR N AD A G
Sbjct: 329 LMDRMQVTWI-HTLRCNNKRADELATFG 355
>gi|145479397|ref|XP_001425721.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392793|emb|CAK58323.1| unnamed protein product [Paramecium tetraurelia]
Length = 321
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 62 NTQSVPYNCYSC-TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYR 120
N + +P S TL FDGASK NPG AGAG L + ++ + + +G TNNVAE+
Sbjct: 176 NLEIIPIQTDSLYTLYFDGASKSNPGPAGAGIAL-FDKMKLIKEITQPLGKQTNNVAEFL 234
Query: 121 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 180
AL G++Y L G + GDSKLV + Q+L + + + F+ +
Sbjct: 235 ALFFGIRYTLNLGINFLECFGDSKLVIDGMNSKINFKQQHLEDIRVAICDYAQLFKKVKY 294
Query: 181 NHILRNLNSEADAQAN 196
HI R+ N AD A+
Sbjct: 295 THISRDQNQIADKLAS 310
>gi|291279864|ref|YP_003496699.1| ribonuclease HI [Deferribacter desulfuricans SSM1]
gi|290754566|dbj|BAI80943.1| ribonuclease HI [Deferribacter desulfuricans SSM1]
Length = 141
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA GNPG AG G V+ ED +V+ E +G ATNN+AEY ALI L+ K + +
Sbjct: 11 DGACSGNPGPAGIGFVIYDEDDNVIKECSEYLGEATNNIAEYTALIKALESIKDKKHYKL 70
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+L+ QI+G++K+ N+NL L + EL + F++ HI R NS AD A
Sbjct: 71 IIYSDSELLVKQIKGVYKVKNKNLKKLYDKVLELIQGV-DFELIHIPREDNSYADKLAKK 129
Query: 198 GI 199
I
Sbjct: 130 AI 131
>gi|78708515|gb|ABB47490.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1783
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 1458 TMAFDGAL--NSQGAGAGLILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAA 1512
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 1513 ALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNVE 1572
Query: 191 ADAQA 195
D A
Sbjct: 1573 PDDLA 1577
>gi|14018058|gb|AAK52121.1|AC079936_17 Putative retroelement [Oryza sativa Japonica Group]
Length = 2079
Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 1523 TMAFDGAL--NSQGAGAGLILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAA 1577
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 1578 ALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNVE 1637
Query: 191 ADAQA 195
D A
Sbjct: 1638 PDDLA 1642
>gi|379318425|pdb|3U3G|D Chain D, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
gi|379318426|pdb|3U3G|B Chain B, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
gi|379318427|pdb|3U3G|C Chain C, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
gi|379318428|pdb|3U3G|A Chain A, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
gi|258450519|gb|ACV72189.1| ribonuclease H [uncultured organism]
Length = 140
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYK-- 135
DG ++GNPG AG G V+ E G+ ++ +G TNNVAEY ALI L+ G K
Sbjct: 9 DGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLV 68
Query: 136 --HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK-EKFQSFQINHILRNLNSEAD 192
+ V+ DS+L+ Q+QG++K+ L + +K E+ + HI R N+ AD
Sbjct: 69 DMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARAD 128
Query: 193 AQANMGI 199
N I
Sbjct: 129 ELVNEAI 135
>gi|108864359|gb|ABA93438.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1129
Score = 73.2 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + G + + + + ATNN AEY+AL++G++ A
Sbjct: 628 TMAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYQALLVGIRVAA 682
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ R N E
Sbjct: 683 ALGVRQLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIE 742
Query: 191 ADAQA 195
D A
Sbjct: 743 PDDLA 747
>gi|108709472|gb|ABF97267.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 663
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 55/87 (63%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
A++NVAEY AL+ GL+ A+ G + + V+GDS+LV Q+ W + N+ +E ++L
Sbjct: 191 ASHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKL 250
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+++F ++ H+LR+ N AD AN G
Sbjct: 251 EDRFDGLELTHVLRHNNEAADRLANFG 277
>gi|50399972|gb|AAT76360.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1474
Score = 72.8 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 55/87 (63%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
A++NVAEY AL+ GL+ A+ G + + V+GDS+LV Q+ W + N+ +E ++L
Sbjct: 972 ASHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKL 1031
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+++F ++ H+LR+ N AD AN G
Sbjct: 1032 EDRFDGLELTHVLRHNNEAADRLANFG 1058
>gi|18568257|gb|AAL75991.1|AF466204_6 putative GAG-POL precursor -orf2 protein [Sorghum bicolor]
Length = 678
Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 61 LNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYR 120
LN SV ++ FDG+ N AGAG + + + + + + A+NNVAEY
Sbjct: 539 LNEPSVSNTPDHWSMFFDGSL--NINGAGAGILFVSPNKDKLRYVLRILFPASNNVAEYE 596
Query: 121 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 180
A + G++ A++ G K + V GDS LV Q+ W ++ + CKE ++ K F +
Sbjct: 597 ACLHGIRLAVELGVKRLYVHGDSALVINQLNKEWDTTHEKMDLYCKEIRKWKSNFYGIEY 656
Query: 181 NHILRNLNSEADAQANMG 198
H++R+ N ADA + +G
Sbjct: 657 IHVVRDKNQAADALSKLG 674
>gi|403251524|ref|ZP_10917859.1| ribonuclease HI [actinobacterium SCGC AAA027-L06]
gi|402915143|gb|EJX36131.1| ribonuclease HI [actinobacterium SCGC AAA027-L06]
Length = 134
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-KGYKH 136
DG S+GNPG A G V+ E+ VV + +G A+NNVAEY LI GLK +
Sbjct: 10 DGGSRGNPGPAAYGTVIF-ENDKVVKEIGASIGEASNNVAEYSGLIAGLKAVNEIDPAAT 68
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKE-KFQSFQINHILRNLNSEADAQA 195
+ V+ DSKLV Q+ G WK+ + N+ L K+A + K S+Q I R NS AD+
Sbjct: 69 VLVKMDSKLVVEQMSGRWKVKHPNMKELAKQAFAAHDPKLVSYQ--WIPREENSHADSIL 126
Query: 196 N 196
N
Sbjct: 127 N 127
>gi|19881765|gb|AAM01166.1|AC113336_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31430472|gb|AAP52381.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 627
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 12/129 (9%)
Query: 72 SCTLEFDGA--SKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGL 126
+ T+ FDGA S+G AGAG +L + G + + + + ATNN AEY L++G+
Sbjct: 222 TWTMAFDGALSSQG----AGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLVGI 274
Query: 127 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+ A G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R
Sbjct: 275 RAAAALGAKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDRIEVRHVYRK 334
Query: 187 LNSEADAQA 195
N E D A
Sbjct: 335 DNVEPDDPA 343
>gi|406965211|gb|EKD90867.1| ribonuclease H [uncultured bacterium]
Length = 134
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ DGAS+GNPG A G ++ +DG V++ +G+ TNNVAEY A++ Y +
Sbjct: 2 ITVFTDGASRGNPGPAAFGYSIK-KDGEVLHEHGGKIGVNTNNVAEYTAVLEAFAYLKKN 60
Query: 133 GYK----HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
YK +I++ DS+L+ Q+ G++KI N L + + K L+ + I R N
Sbjct: 61 VYKGEPLNIQLIADSQLIVRQLAGVYKIKNLRLKEIFNKIKNLEMDLGNITYKSIPREQN 120
Query: 189 SEADAQAN 196
AD+ AN
Sbjct: 121 KRADSLAN 128
>gi|117928110|ref|YP_872661.1| phosphoglycerate mutase [Acidothermus cellulolyticus 11B]
gi|117648573|gb|ABK52675.1| Phosphoglycerate mutase [Acidothermus cellulolyticus 11B]
Length = 411
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREG-VGIATNNVAEYRALILGLKYALQ-K 132
+E DG ++GNPG AG GAV+R V R G + IATNNVAEY LI GL+ A +
Sbjct: 11 VEADGGARGNPGPAGYGAVVRDATTREVLAERSGYLRIATNNVAEYHGLIAGLEAAAEID 70
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSE 190
+ V+ DS+LV Q+ G W+I + +L L A +L F S ++ + R N+
Sbjct: 71 PSAFVDVRLDSQLVVKQMTGEWQIKHPHLQPLADRAAQLAAAFGSGRVTFTWVRREANAH 130
Query: 191 ADAQANMGI 199
AD N I
Sbjct: 131 ADRLVNAAI 139
>gi|387929455|ref|ZP_10132132.1| ribonuclease H [Bacillus methanolicus PB1]
gi|387586273|gb|EIJ78597.1| ribonuclease H [Bacillus methanolicus PB1]
Length = 133
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS G PG +GAG ++A V R +G TN+ AE+ A I ++ ++KGY+ +
Sbjct: 7 DGASAGTPGPSGAGIFIKALGN--VERYSIPLGTMTNHEAEFHAFIKAMEICIEKGYRTV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV I+ + + N+N A L K+A +L E+F F + I + N AD A M
Sbjct: 65 SFRTDSELVNRAIEKEF-VKNKNYAPLLKKALKLSEQFDLFFMKWIPSSENKTADHLARM 123
Query: 198 GI 199
+
Sbjct: 124 AV 125
>gi|77554434|gb|ABA97230.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1807
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1265 TMHFDGSKRLT--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1319
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ + V+G S+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N
Sbjct: 1320 SLSIRRLIVRGYSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEA 1379
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1380 ADRLANFG 1387
>gi|49328062|gb|AAT58762.1| putative polyprotein [Oryza sativa Japonica Group]
gi|49328085|gb|AAT58784.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1178
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 1013 TMAFDGAL--NSQGAGAGFILMSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAA 1067
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 1068 ALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIE 1127
Query: 191 ADAQA 195
D A
Sbjct: 1128 PDDLA 1132
>gi|113205385|gb|ABI34372.1| RNase H family protein [Solanum demissum]
Length = 1033
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L FDGA+ N G GAVL +E G + TNN++EY A ILGL+ A G
Sbjct: 404 LFFDGAA--NKKGVGIGAVLMSESGEYFPITAQLRFYCTNNMSEYEACILGLRLAADMGI 461
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ + V GDS L+ QIQG W+ + L ++L +F S + HI R N ADA
Sbjct: 462 QELLVLGDSDLLVHQIQGEWETRDPKLIPYQHCLQDLCRRFVSIKFRHISRVHNEIADAL 521
Query: 195 ANMGIYLK 202
A + L+
Sbjct: 522 ATLSSMLQ 529
>gi|406907804|gb|EKD48516.1| ribonuclease H [uncultured bacterium]
Length = 157
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 4/131 (3%)
Query: 71 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL 130
++ T+ DGAS+ NPG++GAG + +DG V +GI TNN AEY AL+L L +
Sbjct: 6 HTWTVFVDGASRKNPGKSGAGIFIE-KDGETVCSEGFYLGIKTNNQAEYLALLLALHFID 64
Query: 131 QKGYKH--IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
Q + IR+ DS+L+ Q++G+++I N+ L L AK K+ ++ H+LR N
Sbjct: 65 QYASQSDIIRIASDSELMVKQLKGIYRIKNEGLQPLYHLAKIYFAKY-PIEVLHVLRENN 123
Query: 189 SEADAQANMGI 199
+ADA AN G+
Sbjct: 124 KKADALANKGV 134
>gi|57863855|gb|AAW56896.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1295
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQ 131
+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 876 MAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 930
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + V+GDSKLV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 931 LGVKRLVVKGDSKLVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 990
Query: 192 DAQA 195
D A
Sbjct: 991 DDLA 994
>gi|77554808|gb|ABA97604.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 724
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAV-LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ F+G+ + + +AG + L E S V +R AT+N+AEY AL+ GL+ +
Sbjct: 249 TMHFNGSKRFSSTRAGVVLISLTGERLSYVLWIRFS---ATHNMAEYEALLHGLRITISL 305
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS+LV Q+ W + N+ +E ++L+ KF + H+LR+ + AD
Sbjct: 306 GIRRLIVCGDSQLVVNQVMKEWSCLDDNMIAYRQEVRKLEHKFDGIDLTHVLRHNDEAAD 365
Query: 193 AQANMG 198
AN G
Sbjct: 366 RLANFG 371
>gi|116309132|emb|CAH66235.1| H0825G02.12 [Oryza sativa Indica Group]
Length = 1245
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 60 CLNTQSVPYNCY-----SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI--- 111
CL T S P Y + T+ FDGA N AGAG +L + G + + + +
Sbjct: 651 CLPT-SWPIGPYQGENETWTMAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFR 704
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN AEY L+ G++ A G K + ++GDS+LV Q+ +K +N L+ E ++L
Sbjct: 705 ATNNTAEYEGLLAGIRAAAALGAKRLIIKGDSELVANQVHKDYKCSNPELSKYLSEVRKL 764
Query: 172 KEKFQSFQINHILRNLNSEAD 192
+ +F ++ H+ R N E D
Sbjct: 765 ERRFDGIEVRHVYRKDNVEPD 785
>gi|48475198|gb|AAT44267.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1315
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 54/87 (62%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
A++NVAEY AL+ GL+ A+ G + + V GDS+LV Q+ W + N+ +E ++L
Sbjct: 1205 ASHNVAEYEALLHGLRIAISLGIRRLIVCGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKL 1264
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
++KF ++ H+LR+ N AD AN G
Sbjct: 1265 EDKFDGLELTHVLRHNNEAADRLANFG 1291
>gi|34015095|gb|AAQ56293.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1311
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 54/87 (62%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
A++NVAEY AL+ GL+ A+ G + V+GDS+L+ Q+ W + N+ +E ++L
Sbjct: 774 ASHNVAEYEALLHGLRIAISLGIHRLIVRGDSQLIVNQVMKEWSCLDDNMTAYRQEVRKL 833
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
++KF ++ H+LR+ N AD AN G
Sbjct: 834 EDKFDGLELTHVLRHNNEAADRLANFG 860
>gi|77556325|gb|ABA99121.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1681
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 12/124 (9%)
Query: 74 TLEFDGA--SKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
T+ FDGA S+G AGAG +L + G + + + + ATNN AEY L+ G++
Sbjct: 1207 TMAFDGALNSQG----AGAGFILTSPFGD---QFKHAIHLNFRATNNTAEYEGLLAGIRA 1259
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ HI R N
Sbjct: 1260 ATALGAKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHIYRKDN 1319
Query: 189 SEAD 192
E D
Sbjct: 1320 VEPD 1323
>gi|50878385|gb|AAT85160.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1316
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FD SK G AG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 890 TMHFD-ESKRLSGTV-AGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 944
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ W + N+ +E +L++KF ++ H+LR+ N
Sbjct: 945 SVGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVCKLEDKFNGLELTHVLRHNNEA 1004
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1005 ADRLANFG 1012
>gi|357420376|ref|YP_004933368.1| ribonuclease H [Thermovirga lienii DSM 17291]
gi|355397842|gb|AER67271.1| ribonuclease H [Thermovirga lienii DSM 17291]
Length = 199
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 77 FDGASKGNPGQAGAGA-VLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 135
FDGAS+GNPG+AGAGA ++ G ++++ + +G TNN AEY ALIL L+ L +
Sbjct: 6 FDGASRGNPGEAGAGACIVDFGKGQILWKESKYLGKRTNNEAEYEALILLLRELLNRKLY 65
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 195
+ V+GDSKLV Q+ G WKI L L +EA L +K ++ ++ I R NS AD +
Sbjct: 66 NCVVKGDSKLVVNQMLGNWKIREPRLLPLAEEALFLIDKTKA-RLQWIPRQENSLADNLS 124
Query: 196 NMGI 199
N I
Sbjct: 125 NKAI 128
>gi|327310689|ref|YP_004337586.1| ribonuclease H [Thermoproteus uzoniensis 768-20]
gi|326947168|gb|AEA12274.1| ribonuclease H [Thermoproteus uzoniensis 768-20]
Length = 193
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 69/133 (51%), Gaps = 11/133 (8%)
Query: 73 CTLEFDGASKG-NPGQAGA-GAVLRAEDGSVVYRLREGVGIA------TNNVAEYRALIL 124
C + FDGA + NPG G G V+ E G RL G G+A TNNVAEY AL
Sbjct: 3 CAVYFDGACEPVNPGGLGTYGYVIYDEGGR---RLDRGYGVACHGDGCTNNVAEYVALRE 59
Query: 125 GLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
L+ A + G + ++GDS+LV QI+G W +N+ L L E + L F + + +
Sbjct: 60 ALRRAKELGCDEVEIRGDSQLVVRQIKGEWAVNSLKLMELKDEVEALLAGFARWSVEWVP 119
Query: 185 RNLNSEADAQANM 197
R N EAD + +
Sbjct: 120 REANKEADGLSQI 132
>gi|119873226|ref|YP_931233.1| ribonuclease H [Pyrobaculum islandicum DSM 4184]
gi|119674634|gb|ABL88890.1| ribonuclease H [Pyrobaculum islandicum DSM 4184]
Length = 187
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Query: 75 LEFDGASKG-NPGQAGAGAVLRAEDGSVVY----RLREGVGIATNNVAEYRALILGLKYA 129
L FDGA + NPG G+ ++G VY + G TNN AEY LI GL++A
Sbjct: 5 LFFDGACEPVNPGGVGSYGFAAFKNGEEVYGEGGVVCAGERWCTNNYAEYMGLIKGLEWA 64
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
L G + V GDS+LV Q+ G++++ ++L L K A EL ++F F I + R N+
Sbjct: 65 LAAGESCLNVYGDSQLVVRQMLGVYQVKAEHLKPLYKHAVELSQRFAKFSIGWVPRERNA 124
Query: 190 EAD 192
AD
Sbjct: 125 RAD 127
>gi|9927274|dbj|BAB08213.2| unnamed protein product [Oryza sativa Japonica Group]
Length = 2876
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 14/125 (11%)
Query: 75 LEFDGASK------GNPGQ-AGAGAVLRAEDGSVVYR----LREGVGIATNNVAEYRALI 123
L FDGAS+ G P + AGAG V + G V+Y L+E +NN AEY ALI
Sbjct: 2284 LYFDGASRKDINPDGTPRRRAGAGLVFKTPQGGVIYHSFSLLKEE---CSNNEAEYEALI 2340
Query: 124 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 183
GL AL + +R GDS+L+ QI ++++ L A+ L +KF+ ++ H+
Sbjct: 2341 FGLLLALSMEVRSLRAHGDSRLIIRQINNIYEVRKPELVPYYTVARRLMDKFEHIEVIHV 2400
Query: 184 LRNLN 188
R+ N
Sbjct: 2401 PRSKN 2405
>gi|398332684|ref|ZP_10517389.1| ribonuclease HI [Leptospira alexanderi serovar Manhao 3 str. L 60]
Length = 108
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 56/94 (59%)
Query: 103 YRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLA 162
+R+ E +G TNNVAE+ +L GL+ +++ + I V DS+LV Q+ G +K+ + NL
Sbjct: 10 FRISERIGETTNNVAEWASLKKGLEECIRRKFDTIHVYMDSELVVRQVSGKYKVKHPNLL 69
Query: 163 GLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
KE +L Q+FQI H+ R NS AD AN
Sbjct: 70 EYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 103
>gi|242037781|ref|XP_002466285.1| hypothetical protein SORBIDRAFT_01g005015 [Sorghum bicolor]
gi|241920139|gb|EER93283.1| hypothetical protein SORBIDRAFT_01g005015 [Sorghum bicolor]
Length = 1005
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDG+ AGAG + + G + Y +R A+NNVAEY AL+ GLK A++
Sbjct: 448 TMYFDGSLMKT--GAGAGLLFISPLGVHMRYIIRIHFA-ASNNVAEYEALVNGLKIAIEL 504
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V+GDS+LV Q+ ++ + CKE + L++KF ++ H+ R N AD
Sbjct: 505 GVRRLDVRGDSQLVIDQVMKASSCHDPKMEAYCKEVRRLEDKFHGLELVHVARRYNEAAD 564
Query: 193 AQANMG 198
A +
Sbjct: 565 ELAKIA 570
>gi|108862571|gb|ABA97641.2| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 409
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQ 131
+ FDGA N AGAG +L + G + + + + ATNN AEY+ L+ G++ A+
Sbjct: 1 MAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYKGLLAGIRAAVA 55
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV Q+ +K +N L+ E ++L+++F ++ HI R N E
Sbjct: 56 LGVKRLIIKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHIYRKDNIEP 115
Query: 192 DAQA 195
D A
Sbjct: 116 DDLA 119
>gi|229149897|ref|ZP_04278125.1| hypothetical protein bcere0011_14550 [Bacillus cereus m1550]
gi|228633578|gb|EEK90179.1| hypothetical protein bcere0011_14550 [Bacillus cereus m1550]
Length = 128
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ V +L +G +N+ AEYRAL+L LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV--QLSVPLGTMSNHEAEYRALLLALKYCIEHNYSTV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N A L EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKAYA-KNTIFAPLLDEALQYIKNFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|146304992|ref|YP_001192308.1| ribonuclease H [Metallosphaera sedula DSM 5348]
gi|145703242|gb|ABP96384.1| ribonuclease H [Metallosphaera sedula DSM 5348]
Length = 148
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 67/125 (53%), Gaps = 13/125 (10%)
Query: 77 FDGA-SKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA--------TNNVAEYRALILGLK 127
FDG NPG + +G+V+ EG+G+A TNNVAEY LI LK
Sbjct: 7 FDGLCEPKNPGGIATFGYVIYINGNVI----EGMGLASEPWSVNSTNNVAEYTGLICLLK 62
Query: 128 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
L G RV+GDS+LV Q++G + + ++ + L ++AKEL KF S +I I R
Sbjct: 63 KMLTLGVTEARVEGDSQLVIRQLKGEYSVKSKRIIPLYEKAKELLAKFSSVEIEWIPREE 122
Query: 188 NSEAD 192
N EAD
Sbjct: 123 NKEAD 127
>gi|406914218|gb|EKD53436.1| Ribonuclease H [uncultured bacterium]
Length = 143
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 15/142 (10%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALIL 124
+P + DG S+GNPGQA G + A++G+ V+ L E +G TNNVAEY A++
Sbjct: 1 MPKTIDLLEINTDGGSRGNPGQAAIGVI--AKEGTHKVFSLSERIGETTNNVAEYTAVLR 58
Query: 125 GLKYALQKGY--KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCK----EAKELKE----K 174
L+ + + IR DS+L+ QI GL+K+ +L L K + K+L++ K
Sbjct: 59 ALEKIEEDNVFTEKIRFVLDSELIVKQITGLYKVKQPHLQVLRKKIIDQTKKLRDSGQIK 118
Query: 175 FQSFQINHILRNLNSEADAQAN 196
SF ++LR N EAD N
Sbjct: 119 LMSFV--NVLREKNKEADKLVN 138
>gi|356551150|ref|XP_003543941.1| PREDICTED: uncharacterized protein LOC100803865 [Glycine max]
Length = 1207
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/126 (38%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVV-YRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDGAS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 1067 TVWFDGAS--NILGHGVGAVLISPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1123
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K +RV GDS LV Q++G W+ + L KEL E F +H+ R N AD
Sbjct: 1124 DVKLLRVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAETFDEISFHHVPREENQMAD 1183
Query: 193 AQANMG 198
A A +
Sbjct: 1184 ALATLA 1189
>gi|356565922|ref|XP_003551185.1| PREDICTED: uncharacterized protein LOC100779154 [Glycine max]
Length = 1946
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDGAS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 1373 TVWFDGAS--NILGHGVGAVLISPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1429
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GDS LV Q++G W+ + L KEL E F +H+ R+ N AD
Sbjct: 1430 DVKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAETFDEISFHHVPRDENQMAD 1489
Query: 193 AQANMG 198
A A +
Sbjct: 1490 ALATLA 1495
>gi|30019744|ref|NP_831375.1| ribonuclease H [Bacillus cereus ATCC 14579]
gi|206970760|ref|ZP_03231712.1| RNase H [Bacillus cereus AH1134]
gi|218233881|ref|YP_002366379.1| ribonuclease H [Bacillus cereus B4264]
gi|228952076|ref|ZP_04114171.1| hypothetical protein bthur0006_14870 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228957973|ref|ZP_04119710.1| hypothetical protein bthur0005_14840 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229043450|ref|ZP_04191160.1| hypothetical protein bcere0027_14980 [Bacillus cereus AH676]
gi|229069249|ref|ZP_04202539.1| hypothetical protein bcere0025_14540 [Bacillus cereus F65185]
gi|229078879|ref|ZP_04211431.1| hypothetical protein bcere0023_15410 [Bacillus cereus Rock4-2]
gi|229109152|ref|ZP_04238751.1| hypothetical protein bcere0018_14230 [Bacillus cereus Rock1-15]
gi|229127023|ref|ZP_04256022.1| hypothetical protein bcere0015_14780 [Bacillus cereus BDRD-Cer4]
gi|229144309|ref|ZP_04272715.1| hypothetical protein bcere0012_14700 [Bacillus cereus BDRD-ST24]
gi|296502279|ref|YP_003663979.1| ribonuclease H [Bacillus thuringiensis BMB171]
gi|365162397|ref|ZP_09358526.1| hypothetical protein HMPREF1014_03989 [Bacillus sp. 7_6_55CFAA_CT2]
gi|423435181|ref|ZP_17412162.1| hypothetical protein IE9_01362 [Bacillus cereus BAG4X12-1]
gi|423504709|ref|ZP_17481300.1| hypothetical protein IG1_02274 [Bacillus cereus HD73]
gi|423587923|ref|ZP_17564010.1| hypothetical protein IIE_03335 [Bacillus cereus VD045]
gi|423629444|ref|ZP_17605192.1| hypothetical protein IK5_02295 [Bacillus cereus VD154]
gi|423643261|ref|ZP_17618879.1| hypothetical protein IK9_03206 [Bacillus cereus VD166]
gi|423647622|ref|ZP_17623192.1| hypothetical protein IKA_01409 [Bacillus cereus VD169]
gi|449088488|ref|YP_007420929.1| ribonuclease H [Bacillus thuringiensis serovar kurstaki str. HD73]
gi|29895289|gb|AAP08576.1| Ribonuclease HI [Bacillus cereus ATCC 14579]
gi|206734396|gb|EDZ51566.1| RNase H [Bacillus cereus AH1134]
gi|218161838|gb|ACK61830.1| ribonuclease H [Bacillus cereus B4264]
gi|228639096|gb|EEK95520.1| hypothetical protein bcere0012_14700 [Bacillus cereus BDRD-ST24]
gi|228656376|gb|EEL12215.1| hypothetical protein bcere0015_14780 [Bacillus cereus BDRD-Cer4]
gi|228674162|gb|EEL29407.1| hypothetical protein bcere0018_14230 [Bacillus cereus Rock1-15]
gi|228704293|gb|EEL56727.1| hypothetical protein bcere0023_15410 [Bacillus cereus Rock4-2]
gi|228713736|gb|EEL65621.1| hypothetical protein bcere0025_14540 [Bacillus cereus F65185]
gi|228725828|gb|EEL77075.1| hypothetical protein bcere0027_14980 [Bacillus cereus AH676]
gi|228801680|gb|EEM48560.1| hypothetical protein bthur0005_14840 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228807608|gb|EEM54132.1| hypothetical protein bthur0006_14870 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|296323331|gb|ADH06259.1| ribonuclease H [Bacillus thuringiensis BMB171]
gi|363618282|gb|EHL69632.1| hypothetical protein HMPREF1014_03989 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401125419|gb|EJQ33179.1| hypothetical protein IE9_01362 [Bacillus cereus BAG4X12-1]
gi|401227660|gb|EJR34189.1| hypothetical protein IIE_03335 [Bacillus cereus VD045]
gi|401267311|gb|EJR73371.1| hypothetical protein IK5_02295 [Bacillus cereus VD154]
gi|401275265|gb|EJR81232.1| hypothetical protein IK9_03206 [Bacillus cereus VD166]
gi|401285576|gb|EJR91415.1| hypothetical protein IKA_01409 [Bacillus cereus VD169]
gi|402455231|gb|EJV87014.1| hypothetical protein IG1_02274 [Bacillus cereus HD73]
gi|449022245|gb|AGE77408.1| ribonuclease H [Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 128
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ V +L +G +N+ AEYRAL+L LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV--QLSVPLGTMSNHEAEYRALLLALKYCIEHNYSTV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKIFAPLLDEALQYIKNFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|22165089|gb|AAM93706.1| putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31432507|gb|AAP54129.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 816
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 12/129 (9%)
Query: 72 SCTLEFDGA--SKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGL 126
+ T+ FDGA S+G AGAG +L + G + + + + ATNN AEY L+ G+
Sbjct: 389 TWTMAFDGALHSQG----AGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGI 441
Query: 127 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+ A G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R
Sbjct: 442 RAAAALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRK 501
Query: 187 LNSEADAQA 195
N E D A
Sbjct: 502 DNIEPDDLA 510
>gi|433639224|ref|YP_007284984.1| ribonuclease HI [Halovivax ruber XH-70]
gi|433291028|gb|AGB16851.1| ribonuclease HI [Halovivax ruber XH-70]
Length = 197
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L +DG S+GNPG AG G VL DG +V + +G ATNN AEY ALI L+ A + G+
Sbjct: 71 LYWDGGSRGNPGPAGIGWVLVTGDG-IVAEGSDTIGEATNNQAEYEALIAALEAAREYGF 129
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ +GDS+L+ Q+ G + N+ L E F + I H+ R N AD
Sbjct: 130 DEVHCRGDSELIVKQVTGAYDTNDPVLREKRVTVVEHLSSFDEWTIEHVPREANEHADDL 189
Query: 195 AN 196
AN
Sbjct: 190 AN 191
>gi|108864539|gb|ABA94416.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1714
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + G + + + + ATNN AEY L++G++ A
Sbjct: 1296 TMAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLVGIRAAA 1350
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R + E
Sbjct: 1351 ALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDSIE 1410
Query: 191 ADAQA 195
D A
Sbjct: 1411 PDDLA 1415
>gi|392400991|ref|YP_006437591.1| bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis Cp162]
gi|390532069|gb|AFM07798.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis Cp162]
Length = 363
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 53/99 (53%)
Query: 101 VVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQN 160
++ RL VG ATNNVAEY AL+ GL A + G + V DSKLV Q+ G WKI + +
Sbjct: 10 ILRRLAYAVGTATNNVAEYHALLNGLTAARELGATEVDVLMDSKLVVEQMSGRWKIKHPD 69
Query: 161 LAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGI 199
+ L + + F S I RN N+ AD AN +
Sbjct: 70 MKQLALSCQHIASGFASITYTWIPRNQNARADELANKAM 108
>gi|147766168|emb|CAN61396.1| hypothetical protein VITISV_027489 [Vitis vinifera]
Length = 639
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLK 127
S + FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+
Sbjct: 85 SWRMYFDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLE 142
Query: 128 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
AL+ G + + V GDS LV QIQG WK + L + L +F+ + H+ R
Sbjct: 143 TALELGIRQMEVFGDSNLVLRQIQGEWKTRDAKLKPYHAYLELLVARFEDLRYTHLPRAQ 202
Query: 188 NSEADAQANMG 198
N ADA A +
Sbjct: 203 NQFADALATLA 213
>gi|356510495|ref|XP_003523973.1| PREDICTED: uncharacterized protein LOC100812732 [Glycine max]
Length = 1456
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDGAS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 992 TVWFDGAS--NILGHGVGAVLISPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1048
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GDS LV Q++G W+ + L KEL E F +HI R N AD
Sbjct: 1049 NVKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAETFDEISFHHIPREENQMAD 1108
Query: 193 AQANMG 198
A A +
Sbjct: 1109 ALATLA 1114
>gi|75759688|ref|ZP_00739771.1| Ribonuclease HI / Cell wall enzyme EBSB [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218896627|ref|YP_002445038.1| ribonuclease H [Bacillus cereus G9842]
gi|228900277|ref|ZP_04064507.1| hypothetical protein bthur0014_14830 [Bacillus thuringiensis IBL
4222]
gi|228938808|ref|ZP_04101408.1| hypothetical protein bthur0008_14690 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228964678|ref|ZP_04125785.1| hypothetical protein bthur0004_15220 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228971689|ref|ZP_04132310.1| hypothetical protein bthur0003_14660 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228978298|ref|ZP_04138675.1| hypothetical protein bthur0002_15020 [Bacillus thuringiensis Bt407]
gi|384185603|ref|YP_005571499.1| ribonuclease H [Bacillus thuringiensis serovar chinensis CT-43]
gi|402561312|ref|YP_006604036.1| ribonuclease H [Bacillus thuringiensis HD-771]
gi|410673896|ref|YP_006926267.1| 14.7 kDa ribonuclease H-like protein RnhA [Bacillus thuringiensis
Bt407]
gi|423361655|ref|ZP_17339157.1| hypothetical protein IC1_03634 [Bacillus cereus VD022]
gi|423383090|ref|ZP_17360346.1| hypothetical protein ICE_00836 [Bacillus cereus BAG1X1-2]
gi|423530450|ref|ZP_17506895.1| hypothetical protein IGE_04002 [Bacillus cereus HuB1-1]
gi|423564007|ref|ZP_17540283.1| hypothetical protein II5_03411 [Bacillus cereus MSX-A1]
gi|434374635|ref|YP_006609279.1| ribonuclease H [Bacillus thuringiensis HD-789]
gi|452197921|ref|YP_007478002.1| RNase H [Bacillus thuringiensis serovar thuringiensis str. IS5056]
gi|74492835|gb|EAO55968.1| Ribonuclease HI / Cell wall enzyme EBSB [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218541202|gb|ACK93596.1| RNase H [Bacillus cereus G9842]
gi|228781315|gb|EEM29516.1| hypothetical protein bthur0002_15020 [Bacillus thuringiensis Bt407]
gi|228787779|gb|EEM35737.1| hypothetical protein bthur0003_14660 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228794928|gb|EEM42427.1| hypothetical protein bthur0004_15220 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228820657|gb|EEM66682.1| hypothetical protein bthur0008_14690 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228859312|gb|EEN03742.1| hypothetical protein bthur0014_14830 [Bacillus thuringiensis IBL
4222]
gi|326939312|gb|AEA15208.1| ribonuclease H [Bacillus thuringiensis serovar chinensis CT-43]
gi|401079466|gb|EJP87764.1| hypothetical protein IC1_03634 [Bacillus cereus VD022]
gi|401197774|gb|EJR04700.1| hypothetical protein II5_03411 [Bacillus cereus MSX-A1]
gi|401643950|gb|EJS61644.1| hypothetical protein ICE_00836 [Bacillus cereus BAG1X1-2]
gi|401789964|gb|AFQ16003.1| ribonuclease H [Bacillus thuringiensis HD-771]
gi|401873192|gb|AFQ25359.1| ribonuclease H [Bacillus thuringiensis HD-789]
gi|402446965|gb|EJV78823.1| hypothetical protein IGE_04002 [Bacillus cereus HuB1-1]
gi|409173025|gb|AFV17330.1| 14.7 kDa ribonuclease H-like protein RnhA [Bacillus thuringiensis
Bt407]
gi|452103314|gb|AGG00254.1| RNase H [Bacillus thuringiensis serovar thuringiensis str. IS5056]
Length = 128
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ V +L +G +N+ AEYRAL+L LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV--QLSLPLGTMSNHEAEYRALLLALKYCIEHNYSTV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKIFAPLLDEALQYIKNFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|407010421|gb|EKE25320.1| ribonuclease H [uncultured bacterium]
Length = 170
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 20/142 (14%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKY-----ALQK 132
DG ++GNPG A G +++ ++Y+ E +G +TNN AEY+A+I L Y L
Sbjct: 16 DGGARGNPGPAAIGFLIKDGADRLIYKHSESIGFSTNNTAEYKAVIAALAYLKTRKELVS 75
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLC-------KEAKELKEKFQSF------Q 179
I++ DS+LV Q+ G++KI +Q + L +E L +++Q+ +
Sbjct: 76 SSTTIQLFLDSRLVVNQLNGVFKIKDQKMKTLVLAVRNSERELGVLLDEYQTLFASKAPR 135
Query: 180 INHIL--RNLNSEADAQANMGI 199
I + L R LN EADA N +
Sbjct: 136 IRYTLVPRELNQEADALVNRAL 157
>gi|423423766|ref|ZP_17400797.1| hypothetical protein IE5_01455 [Bacillus cereus BAG3X2-2]
gi|401114594|gb|EJQ22452.1| hypothetical protein IE5_01455 [Bacillus cereus BAG3X2-2]
Length = 128
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ V +L +G +N+ AEYRAL+L LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV--QLSVPLGTMSNHEAEYRALLLALKYCIEHNYSTV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKIFAPLLDEALQYIKNFNLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|110288766|gb|AAP52584.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1486
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 1232 TMAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAA 1286
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 1287 VLGAKRLIVKGDSELVTNQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNVE 1346
Query: 191 ADAQA 195
D A
Sbjct: 1347 PDDLA 1351
>gi|22857591|gb|AAN09865.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1469
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 1215 TMAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAA 1269
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 1270 VLGAKRLIVKGDSELVTNQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNVE 1329
Query: 191 ADAQA 195
D A
Sbjct: 1330 PDDLA 1334
>gi|229178104|ref|ZP_04305475.1| hypothetical protein bcere0005_14660 [Bacillus cereus 172560W]
gi|229189778|ref|ZP_04316791.1| hypothetical protein bcere0002_14540 [Bacillus cereus ATCC 10876]
gi|423414619|ref|ZP_17391739.1| hypothetical protein IE1_03923 [Bacillus cereus BAG3O-2]
gi|423429599|ref|ZP_17406603.1| hypothetical protein IE7_01415 [Bacillus cereus BAG4O-1]
gi|228593692|gb|EEK51498.1| hypothetical protein bcere0002_14540 [Bacillus cereus ATCC 10876]
gi|228605234|gb|EEK62684.1| hypothetical protein bcere0005_14660 [Bacillus cereus 172560W]
gi|401097539|gb|EJQ05561.1| hypothetical protein IE1_03923 [Bacillus cereus BAG3O-2]
gi|401121905|gb|EJQ29694.1| hypothetical protein IE7_01415 [Bacillus cereus BAG4O-1]
Length = 128
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ V +L +G +N+ AEYRAL+L LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV--QLSVPLGTMSNHEAEYRALLLALKYCIEHNYSTV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERALEKEYA-KNKIFAPLLDEALQYIKNFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|77549344|gb|ABA92141.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1929
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
A++NVAEY AL+ GL+ A+ G + + V+GDS+LV Q+ W + N+ +E ++L
Sbjct: 1423 ASHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTTYRQEVRKL 1482
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+ KF ++ H+LR+ N +D AN G
Sbjct: 1483 ENKFDGLELTHVLRHNNEASDKLANFG 1509
>gi|269956870|ref|YP_003326659.1| phosphoglycerate mutase [Xylanimonas cellulosilytica DSM 15894]
gi|269305551|gb|ACZ31101.1| Phosphoglycerate mutase [Xylanimonas cellulosilytica DSM 15894]
Length = 412
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL- 130
+E DG S+GNPG AG GA++R GSV+ +G+ATNNVAEY L+ GL+ A
Sbjct: 9 LVVEADGGSRGNPGPAGYGALVRDVATGSVLAERAGYLGVATNNVAEYTGLLEGLRAAAG 68
Query: 131 --QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ 176
H+R+ DS+LV Q+ G W+I + L + +A+ + Q
Sbjct: 69 IDPAARVHVRL--DSRLVVEQMSGRWQIKHDALRAIAAQARAVLPAAQ 114
>gi|10281201|gb|AAG15480.1| polyprotein [Oryza sativa Indica Group]
Length = 567
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILG 125
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ G
Sbjct: 454 NIEHWTMHFDGSKRLS--GIGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHG 508
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
L+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+L
Sbjct: 509 LRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVL 567
>gi|38346005|emb|CAE01888.2| OSJNBa0035O13.7 [Oryza sativa Japonica Group]
Length = 1421
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
+ T+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++
Sbjct: 843 TWTMAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRA 897
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G K + ++GDS+LV Q+ +K +N L+ E ++L+ +F ++ H+ R N
Sbjct: 898 AAALGAKRLIIKGDSELVANQVHKDYKCSNPELSKYLSEVRKLERRFDGIEVRHVYRKDN 957
Query: 189 SEAD 192
E D
Sbjct: 958 VEPD 961
>gi|108862465|gb|ABA97388.2| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 567
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILG 125
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ G
Sbjct: 454 NMEHWTMHFDGSKRLS--GIGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHG 508
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
L+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+L
Sbjct: 509 LRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVL 567
>gi|288930955|ref|YP_003435015.1| ribonuclease H [Ferroglobus placidus DSM 10642]
gi|288893203|gb|ADC64740.1| ribonuclease H [Ferroglobus placidus DSM 10642]
Length = 210
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 74 TLEFDGAS-KGNPGQ-AGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
L FDGA NPG A G V+ G +V TNN+AEY ALI GL+ AL+
Sbjct: 4 VLYFDGACLPVNPGGIATYGFVIITPSGEIVKEKGIAAEKGTNNIAEYTALIRGLEKALE 63
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + V+GDS+L Q+ G++ + + N+ L + A EL KF+ + + R NS A
Sbjct: 64 LGIDELIVRGDSQLAIYQMNGVYAVKSPNIIPLWQRAMELAGKFRKIRFEWVPREQNSAA 123
Query: 192 D 192
D
Sbjct: 124 D 124
>gi|171185221|ref|YP_001794140.1| ribonuclease H [Pyrobaculum neutrophilum V24Sta]
gi|170934433|gb|ACB39694.1| ribonuclease H [Pyrobaculum neutrophilum V24Sta]
Length = 187
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 75 LEFDGASKG-NPGQAGA--------GAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
L FDGA + NPG G+ G + E G V G TNN AEY LI G
Sbjct: 5 LFFDGACEPVNPGGVGSYGFAAFKNGEEIHGEGGVVC----AGERWCTNNYAEYMGLIRG 60
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L++AL G + V GDS+LV Q+ G++++ ++L L K A EL ++F F I + R
Sbjct: 61 LEWALAAGESCVNVYGDSQLVVRQMLGVYQVKAEHLKPLYKRAVELSQRFAKFSIGWVPR 120
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 121 ERNARAD 127
>gi|78043013|ref|YP_359703.1| ribonuclease HI [Carboxydothermus hydrogenoformans Z-2901]
gi|77995128|gb|ABB14027.1| ribonuclease HI [Carboxydothermus hydrogenoformans Z-2901]
Length = 148
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 5/128 (3%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRAL---ILGLKYALQ 131
+ DG S+GNPG A + V+ E+G V+Y + +GI TNNVAE+ AL L L + Q
Sbjct: 5 VHIDGGSRGNPGPAASAMVIYDENGEVLYEKSKYLGITTNNVAEWEALKGAFLALTFLAQ 64
Query: 132 K-GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL-KEKFQSFQINHILRNLNS 189
K G + DS+L+ Q G +K+ ++ L + E K+L ++H+ R N
Sbjct: 65 KHGKVEAEIFADSELMVKQFNGQYKVRDEKLKEIYAEVKKLAANPALKVTLSHVYRENNK 124
Query: 190 EADAQANM 197
AD N+
Sbjct: 125 AADRLVNL 132
>gi|338808403|gb|AEJ07907.1| putative Huck2 pol protein [Zea luxurians]
Length = 619
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 67 PYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILG 125
P T+ FDG+ AGAG + + G + Y LR A+NNVAEY ALI G
Sbjct: 3 PIQPELWTMFFDGSLMKT--GAGAGLLFVSPLGKHLRYVLRLHFP-ASNNVAEYEALING 59
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A++ G + + +GDS+LV Q+ + + C E + L++KF ++NHI R
Sbjct: 60 LRIAIELGVRRLDARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFYGLELNHIAR 119
Query: 186 NLNSEADAQANMG 198
N AD A +
Sbjct: 120 RYNETADELAKIA 132
>gi|88602713|ref|YP_502891.1| ribonuclease H [Methanospirillum hungatei JF-1]
gi|88188175|gb|ABD41172.1| ribonuclease H [Methanospirillum hungatei JF-1]
Length = 134
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG A ++ E+G+ + +G TNNVAEY A+I L A ++ + I
Sbjct: 7 DGASRGNPGPAACSYQIKDENGNRIADYVCFLGQTTNNVAEYTAIIKALTRAAEETKEAI 66
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKF 175
V DS+LV QI G+++IN +L L E L +F
Sbjct: 67 HVYSDSQLVIRQITGVYRINKPHLKALYDEVMVLASRF 104
>gi|154151098|ref|YP_001404716.1| ribonuclease H [Methanoregula boonei 6A8]
gi|153999650|gb|ABS56073.1| ribonuclease H [Methanoregula boonei 6A8]
Length = 154
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+ T+ DGAS+GNPG A G + + +++ +G ATNN AEY A++ LK A +
Sbjct: 20 TLTVYTDGASRGNPGLAAYGFIF-VRNNEIIFEEARTIGTATNNTAEYYAILSALKKATE 78
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
+ I V DS+LV QI ++I +LA L E L++ F ++ R
Sbjct: 79 FASESILVYSDSELVIKQINNQYRITKPHLAQLRAELALLEKNFTDLHFRNVPR 132
>gi|108708807|gb|ABF96602.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1727
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 12/126 (9%)
Query: 72 SCTLEFDGA--SKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGL 126
+ T+ FDGA S+G AGAG +L + G + + + + ATNN AEY L+ G+
Sbjct: 1258 TWTMAFDGALNSQG----AGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGI 1310
Query: 127 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+ A G K + V+GDS+LV Q+ +K +N L+ + ++L+++F ++ H+ R
Sbjct: 1311 RAAAALGAKRLIVKGDSELVANQVHKDYKCSNPELSKYLAKVRKLEKRFDGIEVRHVYRK 1370
Query: 187 LNSEAD 192
N E D
Sbjct: 1371 DNVEPD 1376
>gi|41469127|gb|AAS07078.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1724
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 12/126 (9%)
Query: 72 SCTLEFDGA--SKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGL 126
+ T+ FDGA S+G AGAG +L + G + + + + ATNN AEY L+ G+
Sbjct: 1255 TWTMAFDGALNSQG----AGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGI 1307
Query: 127 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+ A G K + V+GDS+LV Q+ +K +N L+ + ++L+++F ++ H+ R
Sbjct: 1308 RAAAALGAKRLIVKGDSELVANQVHKDYKCSNPELSKYLAKVRKLEKRFDGIEVRHVYRK 1367
Query: 187 LNSEAD 192
N E D
Sbjct: 1368 DNVEPD 1373
>gi|116311078|emb|CAH68008.1| OSIGBa0157K09-H0214G12.19 [Oryza sativa Indica Group]
Length = 1346
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 21/169 (12%)
Query: 37 YVAAAG-STSFSINTQRSHLNADSCLNTQSVPYNCY-------SCTLEFDGA--SKGNPG 86
Y+AA S S I +R + AD + ++P N + T+ FDGA S+G
Sbjct: 741 YIAATPYSVSTVIVVEREKVLADFVAD-WTMPDNKPDNQGDNETWTMAFDGALNSQG--- 796
Query: 87 QAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQKGYKHIRVQGDS 143
AGAG +L + G + + + + ATNN AEY L+ G++ A G K + V+G+S
Sbjct: 797 -AGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAAALGAKRLIVKGNS 852
Query: 144 KLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
KLV Q+ +K +N L+ E ++L+ +F ++ H+ R N E D
Sbjct: 853 KLVANQVYKDYKCSNPELSKYLSEVRKLERRFDGIEVRHVYRKDNVEPD 901
>gi|356506670|ref|XP_003522099.1| PREDICTED: uncharacterized protein LOC100817680 [Glycine max]
Length = 1197
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDGAS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 1073 TVWFDGAS--NILGHGVGAVLISPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1129
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GDS LV Q++G W+ + L KEL E F +H+ R N AD
Sbjct: 1130 DVKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAETFDEISFHHVPREENQMAD 1189
Query: 193 AQANMG 198
A A +
Sbjct: 1190 ALATLA 1195
>gi|28927675|gb|AAO62321.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1665
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++
Sbjct: 1134 TMAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRATA 1188
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ +K +N L+ E ++L++ F ++ H+ R N E
Sbjct: 1189 TLGAKRLIVKGDSELVTNQVHKDYKCSNSELSKYLAEVRKLEKNFDGIEVRHVYRKDNVE 1248
Query: 191 ADAQA 195
D A
Sbjct: 1249 PDDLA 1253
>gi|108708395|gb|ABF96190.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1602
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++
Sbjct: 1071 TMAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRATA 1125
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ +K +N L+ E ++L++ F ++ H+ R N E
Sbjct: 1126 TLGAKRLIVKGDSELVTNQVHKDYKCSNSELSKYLAEVRKLEKNFDGIEVRHVYRKDNVE 1185
Query: 191 ADAQA 195
D A
Sbjct: 1186 PDDLA 1190
>gi|156937941|ref|YP_001435737.1| ribonuclease H [Ignicoccus hospitalis KIN4/I]
gi|156566925|gb|ABU82330.1| ribonuclease H [Ignicoccus hospitalis KIN4/I]
Length = 163
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 75 LEFDGASKG-NPGQAGAGAVLRAEDGSVVYRLREGVGIA------TNNVAEYRALILGLK 127
L FDG + NPG + E G V+ + VG+ TNNVAEY ALI L+
Sbjct: 11 LYFDGLCEPVNPGGVATYGFVVKEGGKVLCSGKGLVGVGARGDDVTNNVAEYTALIKALE 70
Query: 128 YALQKGYK--HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+KG + + V+GDS+L Q++G +K+ + +A L K AKEL KF++ ++ + R
Sbjct: 71 CLLEKGLEGAEVVVKGDSQLAIRQLRGEYKVRSPRIAPLYKRAKELLSKFKA-ELQWVPR 129
Query: 186 NLNSEADA 193
LN EADA
Sbjct: 130 ELNEEADA 137
>gi|108707203|gb|ABF94998.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 977
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 391 TMAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAA 445
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ +K +N L+ E ++L++KF ++ H R N E
Sbjct: 446 TLGAKRLIVKGDSELVANQVHKDYKCSNPKLSKYLAEVRKLEKKFDGIEVRHAYRKDNVE 505
Query: 191 ADAQA 195
D A
Sbjct: 506 PDDLA 510
>gi|92886093|gb|ABE88103.1| Ribonuclease H [Medicago truncatula]
Length = 445
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L FDGA N G GAV+ + G + + TNN+AEY A I G++ A+
Sbjct: 221 LVFDGAV--NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 278
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
KH+ + GDS LV QI+G W+ ++ L A+ L F +++HI R+ N ADA
Sbjct: 279 KHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 338
Query: 195 ANMG 198
A +
Sbjct: 339 ATLS 342
>gi|32488455|emb|CAE03388.1| OSJNBa0004N05.12 [Oryza sativa Japonica Group]
Length = 1346
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 20/167 (11%)
Query: 38 VAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCY-------SCTLEFDGA--SKGNPGQA 88
VA S S I +R + AD + ++P N + T+ FDGA S+G A
Sbjct: 743 VATPYSVSTIIVVEREKVLADFVAD-WTMPDNKPDNQGDNETWTMAFDGALNSQG----A 797
Query: 89 GAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKL 145
GAG +L + G + + + + ATNN AEY L+ G++ A G K + V+G+SKL
Sbjct: 798 GAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAAALGAKRLIVKGNSKL 854
Query: 146 VCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
V Q+ +K +N L+ E ++L+ +F ++ H+ R N E D
Sbjct: 855 VANQVYKDYKCSNPELSKYLSEVRKLERRFDGIEVRHVYRKDNVEPD 901
>gi|356506918|ref|XP_003522220.1| PREDICTED: uncharacterized protein LOC100800605 [Glycine max]
Length = 1467
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDGAS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 1025 TVWFDGAS--NILGHGVGAVLISPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1081
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N AD
Sbjct: 1082 DVKLLKVYGDSALVIHQLRGEWETRDPKLVPYKAYIKELAKTFDEISFHHVPREENQMAD 1141
Query: 193 AQANMG 198
A A +
Sbjct: 1142 ALATLA 1147
>gi|406929765|gb|EKD65276.1| hypothetical protein ACD_50C00143G0011 [uncultured bacterium]
Length = 142
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ-----K 132
DG ++GNPG++ G + E G+ V L + +GIATNNVAEY ++ L + ++ +
Sbjct: 11 DGGARGNPGESAVGVYIVDEKGNQVAALGKKIGIATNNVAEYMGVLEALSFIIENKKSLE 70
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI--NHILRNLNSE 190
+ I DS LVC QI+G +K+ + L L + ++ KE+ + I +HI R N +
Sbjct: 71 EIERINFFLDSNLVCSQIRGFFKVKDAKLRDLLFKVRQ-KEQEINLPIYYSHIPREKNKK 129
Query: 191 ADAQANMGI 199
AD N +
Sbjct: 130 ADFLVNQAL 138
>gi|356565902|ref|XP_003551175.1| PREDICTED: uncharacterized protein LOC100813923 [Glycine max]
Length = 1292
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVV-YRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDGAS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 1043 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1099
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N AD
Sbjct: 1100 NVKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMAD 1159
Query: 193 AQANMG-IYLKD 203
A A + I+L++
Sbjct: 1160 ALATLASIFLEN 1171
>gi|374584172|ref|ZP_09657264.1| ribonuclease H [Leptonema illini DSM 21528]
gi|373873033|gb|EHQ05027.1| ribonuclease H [Leptonema illini DSM 21528]
Length = 143
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 73/131 (55%), Gaps = 14/131 (10%)
Query: 78 DGASKGNPGQAGAGAVL--RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 135
DGAS+GNPG A A++ + D + RL + +G ATNNVAEY+ LILGL+ L K
Sbjct: 8 DGASRGNPGPAACAAIIYKNSPDSDALLRLGKVLGTATNNVAEYQGLILGLEGLLDHLAK 67
Query: 136 ----------HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
HIR+ DS+L+ Q+ G +K+ ++ + L AK + +F + + H+ R
Sbjct: 68 DGVAPASVSLHIRM--DSELIIRQLTGQYKVKHEAMKPLFARAKGMLSQFAAVRPEHVRR 125
Query: 186 NLNSEADAQAN 196
N EAD AN
Sbjct: 126 EFNKEADQLAN 136
>gi|228990707|ref|ZP_04150672.1| hypothetical protein bpmyx0001_14690 [Bacillus pseudomycoides DSM
12442]
gi|228996809|ref|ZP_04156443.1| hypothetical protein bmyco0003_13940 [Bacillus mycoides Rock3-17]
gi|229004485|ref|ZP_04162226.1| hypothetical protein bmyco0002_14400 [Bacillus mycoides Rock1-4]
gi|228756770|gb|EEM06074.1| hypothetical protein bmyco0002_14400 [Bacillus mycoides Rock1-4]
gi|228762870|gb|EEM11783.1| hypothetical protein bmyco0003_13940 [Bacillus mycoides Rock3-17]
gi|228769233|gb|EEM17831.1| hypothetical protein bpmyx0001_14690 [Bacillus pseudomycoides DSM
12442]
Length = 128
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ V +L +GI +N+ AEY AL++ LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV--QLSLPLGIMSNHEAEYHALLVALKYCMEHNYSIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKTYAPLLEEALAYIKSFDLFFIKWIPNSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|41469084|gb|AAS07058.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 706
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 8/127 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
+ T+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++
Sbjct: 237 TWTMAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRA 291
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G K + V+GDS+LV Q+ +K +N L+ + ++L+++F ++ H+ R N
Sbjct: 292 AAALGAKRLIVKGDSELVANQVHKDYKCSNPELSKYLAKVRKLEKRFDGIEVRHVYRKDN 351
Query: 189 SEADAQA 195
E D A
Sbjct: 352 VEPDDLA 358
>gi|423654475|ref|ZP_17629774.1| hypothetical protein IKG_01463 [Bacillus cereus VD200]
gi|401295986|gb|EJS01609.1| hypothetical protein IKG_01463 [Bacillus cereus VD200]
Length = 128
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKG+PG +GAG ++ + +L +G +N+ AEYRAL+L LKY ++ Y +
Sbjct: 7 DGASKGDPGPSGAGVFIKGVQPPI--QLSVPLGTMSNHEAEYRALLLALKYCIEHNYSTV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKIFAPLLDEALQYIKNFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|348675545|gb|EGZ15363.1| hypothetical protein PHYSODRAFT_505768 [Phytophthora sojae]
Length = 389
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 172
TNN AEY AL+LG + A G +RV+GDS LV Q++G++ N L L + K
Sbjct: 7 TNNTAEYSALLLGSRAAADHGATSLRVEGDSTLVIQQVRGIFAARNAVLRRLRDQVKVEL 66
Query: 173 EKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAECSSFT 214
+ SF ++HI R N+ AD AN + L+ + EC + T
Sbjct: 67 ARVGSFSLHHIDRQANAHADRLANRALDLR--RTMMECGAHT 106
>gi|229084695|ref|ZP_04216962.1| hypothetical protein bcere0022_13290 [Bacillus cereus Rock3-44]
gi|228698651|gb|EEL51369.1| hypothetical protein bcere0022_13290 [Bacillus cereus Rock3-44]
Length = 128
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ V +L +GI +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV--QLSLPLGIMSNHEAEYHALLAALKYCTEHNYNTV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA +KF F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKTYAPLLEEALAYIKKFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|30089739|gb|AAP20843.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|108708895|gb|ABF96690.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1547
Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + G + + + + ATNN+AEY L+ G++ A
Sbjct: 1133 TMAFDGAL--NSQGAGAGFILTSPSGE---QFKHAIHLNFRATNNIAEYERLLAGIRAAA 1187
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ R N +
Sbjct: 1188 ALGVKRLVVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIK 1247
Query: 191 ADAQA 195
D A
Sbjct: 1248 PDDLA 1252
>gi|77549295|gb|ABA92092.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1658
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 12/129 (9%)
Query: 72 SCTLEFDGA--SKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGL 126
+ T+ FDGA S+G AGAG +L + G + + + + ATNN AEY L+ G+
Sbjct: 1095 TWTMAFDGALNSQG----AGAGFILTSPFGD---QFKHAIHLNFRATNNTAEYEGLLAGI 1147
Query: 127 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+ G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R
Sbjct: 1148 RATAALGAKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRK 1207
Query: 187 LNSEADAQA 195
N E D A
Sbjct: 1208 DNVEPDDLA 1216
>gi|77554589|gb|ABA97385.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 607
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++N+AEY AL+ L+ A+
Sbjct: 371 TMHFDGSKRLT--GTGAGVVLISPTGE---RLSYVLWIHFSASHNMAEYEALLHRLRIAI 425
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + ++GDS+LV Q+ W N N+ +E ++L++KF ++ H+L + N
Sbjct: 426 SLGIRRLIIRGDSQLVINQVMKEWSCLNDNMTAYRQEVRKLEDKFDGLELTHVLGHNNEA 485
Query: 191 ADAQANMG 198
A+ +N G
Sbjct: 486 ANRLSNFG 493
>gi|359474674|ref|XP_003631510.1| PREDICTED: uncharacterized protein LOC100243172 [Vitis vinifera]
Length = 2076
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R +ATNN+ EY A ILGL+ AL+
Sbjct: 1475 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSNQHLATNNIVEYEACILGLETALEL 1532
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 1533 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDMRYTHLPRAQNQFAD 1592
Query: 193 AQANMG 198
A A +
Sbjct: 1593 ALATLA 1598
>gi|147845162|emb|CAN81618.1| hypothetical protein VITISV_001999 [Vitis vinifera]
Length = 674
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R +ATNN+ EY A ILGL+ AL+
Sbjct: 99 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSNQHLATNNIVEYEACILGLETALEL 156
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 157 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDMRYTHLPRAQNQFAD 216
Query: 193 AQANMG 198
A A +
Sbjct: 217 ALATLA 222
>gi|4417309|gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 889
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVGIATNNVAEYRALILGLKYALQKG 133
L DG+S N +G G L + G V+ + L+ G A+NN +EY ALI G+K A +KG
Sbjct: 645 LHVDGSS--NRQGSGVGIQLTSPTGEVIEQSLQLGFN-ASNNESEYEALIAGIKLAQEKG 701
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ I DS+LV Q G ++ ++ + + K L ++F+SF++ I R N+ AD
Sbjct: 702 IREIHAYSDSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADT 761
Query: 194 QANMG 198
A +
Sbjct: 762 LAALA 766
>gi|356524006|ref|XP_003530624.1| PREDICTED: uncharacterized protein LOC100785887 [Glycine max]
Length = 2320
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDG---SVVYRLREGVGIATNNVAEYRALILGLKYA 129
L FDGA GN G GAV+ +G RLR TNNVAEY A ILG++ A
Sbjct: 1748 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLRFD---CTNNVAEYEACILGIEKA 1800
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
+ K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N
Sbjct: 1801 IDLKIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQ 1860
Query: 190 EADAQANM 197
ADA A +
Sbjct: 1861 MADALATL 1868
>gi|356566034|ref|XP_003551240.1| PREDICTED: uncharacterized protein LOC100800043 [Glycine max]
Length = 1267
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVV-YRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDGAS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 1085 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1141
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N AD
Sbjct: 1142 NVKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMAD 1201
Query: 193 AQANMGIYLKDGQVE 207
A A + K +++
Sbjct: 1202 ALATLASMAKHVEIK 1216
>gi|2829861|gb|AAC00569.1| Unknown protein [Arabidopsis thaliana]
Length = 79
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 46/60 (76%)
Query: 149 QIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEA 208
QI+G WK+N++ LA L KEAK L K SF+I+H+LRNLN++AD QAN+ + L +G+VE
Sbjct: 19 QIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLNADADEQANLAVRLPEGEVEV 78
>gi|356573867|ref|XP_003555077.1| PREDICTED: uncharacterized protein LOC100811111 [Glycine max]
Length = 2265
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +GS + TNNVAEY A ILG++ A+
Sbjct: 1693 LIFDGAVNVFGN----GIGAVIITPEGSHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1748
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1749 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQMAD 1808
Query: 193 AQANM 197
A A +
Sbjct: 1809 ALATL 1813
>gi|50511398|gb|AAT77321.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287583|gb|AAV31327.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1677
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 52/89 (58%)
Query: 110 GIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAK 169
G +VAEY AL+ GLK ++ G +H+ V+GDS+LV Q+ +W + N+ +
Sbjct: 1245 GFQALDVAEYEALLHGLKISISLGIRHLIVRGDSQLVVNQVMKVWSCLDDNMTAYRQGVC 1304
Query: 170 ELKEKFQSFQINHILRNLNSEADAQANMG 198
+L++KF ++ H+LR N AD AN G
Sbjct: 1305 KLEDKFDGLELTHVLRRNNEAADRLANFG 1333
>gi|9759309|dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ DGAS GNPGQA AG V+R E GS + +G+ + +AE + GL A ++G
Sbjct: 517 TMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERG 576
Query: 134 YKHIRVQGDSKLVCMQIQ-GLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
++ +R++ DS LV +Q G+ ++ LA L + K +I H+ R N AD
Sbjct: 577 WRRVRLEVDSALVVGFLQSGIG--DSHPLAFLVRLCHGFISKDWIVRITHVYREANRLAD 634
Query: 193 AQANMGIYLKDG 204
AN L G
Sbjct: 635 GLANYAFTLPFG 646
>gi|77555122|gb|ABA97918.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 540
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + RL + I A++NVAEY AL+ GL+ +
Sbjct: 281 TMHFDGSKRLS--GIGAGVVLIS---PTRERLSYVLWIHFSASHNVAEYEALLHGLRITI 335
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V G+S+LV + W + N+ +E ++L++KF ++ H+L++ N
Sbjct: 336 SLGIRRLIVHGNSQLVVNHVMKEWSCLDDNMTAYLQEVRKLEDKFDGLELPHVLQHNNEA 395
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 396 ADRLANFG 403
>gi|294873429|ref|XP_002766623.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239867655|gb|EEQ99340.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 369
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 75/149 (50%), Gaps = 16/149 (10%)
Query: 64 QSVPYNCYS-CTLEFDGASKGNPGQAGAGAVLRAEDGS------VVYRLREGVGIATNNV 116
QS P N L FDG S+G AG+GAVL +DG+ + L+ G G TNN
Sbjct: 210 QSTPSNLMPNLMLTFDGGSQGGQSSAGSGAVLYRKDGNGRFDEIAAWSLKLGPG-RTNNE 268
Query: 117 AEYRALILGLKY--ALQKGYKHIRVQGDSKLVCMQI-QGLWKINNQNLAGLCKEAKE--- 170
AEY AL +GL L + ++ +QGDSKLV Q+ WK+N + L L A++
Sbjct: 269 AEYEALCMGLDKINELIEEPANLTIQGDSKLVISQMGPSQWKVNKEELRQLKDRAEQAIH 328
Query: 171 -LKEKFQSFQINHILRNLNSEADAQANMG 198
L ++ Q I H LR N AD A G
Sbjct: 329 GLMDRMQVTWI-HTLRCNNKRADELATFG 356
>gi|152975120|ref|YP_001374637.1| ribonuclease H [Bacillus cytotoxicus NVH 391-98]
gi|152023872|gb|ABS21642.1| ribonuclease H [Bacillus cytotoxicus NVH 391-98]
Length = 132
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
DGASKGNPG +GAG ++ V +L +G +N+ AEY AL++ LKY ++ Y
Sbjct: 6 IDGASKGNPGPSGAGVFIKGIQQPV--QLSIPLGSMSNHEAEYHALLIALKYCIKHNYSI 63
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ + DS+LV I+ + N+ A L +EA +KF+ F I + + N AD A
Sbjct: 64 VSFRTDSQLVERAIEKEYA-KNKTYAPLLQEALTYIDKFELFFIKWVPSSQNKVADELAR 122
Query: 197 MGI 199
I
Sbjct: 123 KAI 125
>gi|359483561|ref|XP_003632976.1| PREDICTED: uncharacterized protein LOC100852629 [Vitis vinifera]
Length = 2289
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LR---EGVGIATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R +ATNN+ EY A ILGL+ AL+
Sbjct: 1706 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLTFSNQHLATNNIVEYEACILGLETALEL 1763
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 1764 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDLRYTHLPRAQNQFAD 1823
Query: 193 AQANMG 198
A A +
Sbjct: 1824 ALATLA 1829
>gi|357471453|ref|XP_003606011.1| NBS-containing resistance-like protein, partial [Medicago
truncatula]
gi|355507066|gb|AES88208.1| NBS-containing resistance-like protein, partial [Medicago
truncatula]
Length = 260
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 12/133 (9%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVY---RLREGVGIATNNVAEYRALILGLKYA 129
L FDGA GN G GAV+ G+ + RLR TNN+AEY A I+G++ A
Sbjct: 102 LIFDGAVNVFGN----GIGAVILTPKGTHIPFTARLRFD---CTNNIAEYEACIMGIEEA 154
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
+ K+I + GDS LV QI+G W+ ++ L A+ L F +++HI R+ N
Sbjct: 155 IDLRIKNIDIYGDSALVINQIKGKWETHHDGLVPYRDYARRLLTFFNKVELHHIPRDENQ 214
Query: 190 EADAQANMGIYLK 202
ADA A + +K
Sbjct: 215 MADALATLSSMIK 227
>gi|356566411|ref|XP_003551425.1| PREDICTED: uncharacterized protein LOC100794033 [Glycine max]
Length = 1199
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVV-YRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDGAS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 1074 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1130
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N AD
Sbjct: 1131 NVKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMAD 1190
Query: 193 AQANMG 198
A A +
Sbjct: 1191 ALATLA 1196
>gi|356541586|ref|XP_003539255.1| PREDICTED: uncharacterized protein LOC100809507 [Glycine max]
Length = 1322
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVV-YRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDGAS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 1070 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1126
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N AD
Sbjct: 1127 NVKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMAD 1186
Query: 193 AQANMG 198
A A +
Sbjct: 1187 ALATLA 1192
>gi|356523394|ref|XP_003530325.1| PREDICTED: uncharacterized protein LOC100777325 [Glycine max]
Length = 1159
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVV-YRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDGAS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 1035 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1091
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N AD
Sbjct: 1092 NVKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMAD 1151
Query: 193 AQANMG 198
A A +
Sbjct: 1152 ALATLA 1157
>gi|356502974|ref|XP_003520289.1| PREDICTED: uncharacterized protein LOC100784699 [Glycine max]
Length = 1826
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVV-YRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDGAS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 1253 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1309
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N AD
Sbjct: 1310 NVKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMAD 1369
Query: 193 AQANMG 198
A A +
Sbjct: 1370 ALATLA 1375
>gi|20043049|gb|AAM08857.1|AC113339_3 Putative retroelement [Oryza sativa Japonica Group]
gi|21672047|gb|AAM74409.1|AC120497_9 Putative retroelement [Oryza sativa Japonica Group]
gi|31430964|gb|AAP52809.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 781
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 37 YVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLE-------FDGASKGNPGQAG 89
Y+AA T +S+ T +S + AD N ++P N ++ FDGA N G
Sbjct: 258 YIAA---TPYSV-TIKSQVLADFVAN-WTMPENRSDSQIDNETWIMAFDGAL--NSQGVG 310
Query: 90 AGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLV 146
AG +L + G + + + + ATNN AEY L+ G++ A G K + V+GDS+LV
Sbjct: 311 AGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAATVLGVKRLIVKGDSELV 367
Query: 147 CMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 195
Q+ +K ++ L+ E ++L+++F ++ H+ RN N E D A
Sbjct: 368 ANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRNDNIEPDDLA 416
>gi|22094344|gb|AAM91871.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 552
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 10/121 (8%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQ 131
+ FDGA GAG L + G + + + + ATNN AEY L+ G+K A
Sbjct: 362 MAFDGALNSQ----GAGTGLTSPTGD---QFKHAIHLNFRATNNTAEYEGLLAGIKAAAA 414
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + V+GDS+LV Q+ +K +N LA E ++L+ KF ++ H+ R N E
Sbjct: 415 LGVKRLIVKGDSELVANQVHKDYKCSNPELAKYLAEVRKLERKFNDIEVRHVYRKDNVEP 474
Query: 192 D 192
D
Sbjct: 475 D 475
>gi|348665813|gb|EGZ05642.1| hypothetical protein PHYSODRAFT_462993 [Phytophthora sojae]
Length = 538
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 172
TNN AEY AL+LG + A G +RV+GDS LV Q++G++ N L L + K
Sbjct: 7 TNNTAEYSALLLGSRAAADHGATSLRVEGDSTLVIQQVRGIFAARNAVLRRLRDQVKVEL 66
Query: 173 EKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAECSSFT 214
+ SF ++HI R N+ AD AN + L+ + EC + T
Sbjct: 67 ARVGSFSLHHIDRQANAHADRLANRALDLR--RTMMECGAHT 106
>gi|449457791|ref|XP_004146631.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
sativus]
gi|449488498|ref|XP_004158057.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
sativus]
Length = 205
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 23/187 (12%)
Query: 43 STSFSINTQRSHLNADSCLNTQSVPYNC------YSCT-LEFDGASKGN--PGQAGAGAV 93
S+++ I +S L A L+ + +P + T L FDG+SKG PG A G V
Sbjct: 7 SSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGV 66
Query: 94 LRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGL 153
LR + E +G A +++AE +AL GL+ L+ G+K + V+GD+K GL
Sbjct: 67 LRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAK-------GL 119
Query: 154 WKINNQNLAGLCKEA-------KELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQV 206
+I +N C EA K L F + +++HI R N AD A++G K ++
Sbjct: 120 VEILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEI 179
Query: 207 EAECSSF 213
E
Sbjct: 180 WRELPPL 186
>gi|147863985|emb|CAN80489.1| hypothetical protein VITISV_039325 [Vitis vinifera]
Length = 2093
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGV----GIATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + RL V + TNN+ EY A ILGL+ AL+
Sbjct: 1518 FDGAA--NQLGFGIGVLLISPQGDHIPRLVRLVFSNRHLTTNNIVEYEACILGLETALEL 1575
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1576 GIRQMEVFGDSNLVLRQIQGDWKTRDVKLRSYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1635
Query: 193 AQANMG 198
A A +
Sbjct: 1636 ALATLA 1641
>gi|38567751|emb|CAE76039.1| B1292H11.25 [Oryza sativa Japonica Group]
Length = 1610
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + G + + + + ATNN A+Y L++G++ A
Sbjct: 1056 TMAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAKYEGLLVGIRAAA 1110
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + V+GDSKLV Q+ +K ++ L+ E ++L+++F ++ H+ R N E
Sbjct: 1111 ALGVRRQIVKGDSKLVAKQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIE 1170
Query: 191 ADAQA 195
D A
Sbjct: 1171 PDDLA 1175
>gi|392404409|ref|YP_006441021.1| ribonuclease H [Turneriella parva DSM 21527]
gi|390612363|gb|AFM13515.1| ribonuclease H [Turneriella parva DSM 21527]
Length = 148
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 18/151 (11%)
Query: 61 LNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAV------------LRAEDGSVVYRLREG 108
+N S P N Y C DGAS+GNPG A G + ++ + ++ + +
Sbjct: 1 MNPVSEPINIY-C----DGASRGNPGPASFGVAAFSGNEDVSLGRFKNDEKTALFTIEQK 55
Query: 109 VGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEA 168
+G TNN AEY A++ L ++ + R+ DS+LV Q+QG +K+ +NL G EA
Sbjct: 56 LGNRTNNEAEYAAILAALNKCIELKIEAPRLISDSELVIRQLQGRYKVKGENLKGPYAEA 115
Query: 169 KELKEKFQSFQINHILRNLNSEADAQANMGI 199
L + Q+ H+ R N AD AN +
Sbjct: 116 LRLAAVVKP-QLVHVPREKNQIADFLANRAL 145
>gi|62733054|gb|AAX95171.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77549581|gb|ABA92378.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 2041
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 12/129 (9%)
Query: 69 NCYSCTLEFDGA--SKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALI 123
N + T+ FD A S+G AGAG +L + + + + ATNN+AEY L+
Sbjct: 1623 NNETWTMAFDSALNSQG----AGAGFILTSPSRD---QFNHAIHLNFRATNNIAEYEGLL 1675
Query: 124 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 183
G++ A G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+
Sbjct: 1676 AGIRAAAALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHV 1735
Query: 184 LRNLNSEAD 192
R +N E D
Sbjct: 1736 YRKVNIEPD 1744
>gi|218198771|gb|EEC81198.1| hypothetical protein OsI_24213 [Oryza sativa Indica Group]
Length = 206
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 65/124 (52%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L FDG+SK + G A G V R DG+ + E +G AT++VAE AL GL+ A++ G+
Sbjct: 55 LNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALRRGLELAVRNGW 114
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ + +GDSK V + + ++ LC+E L + ++H+ R N A
Sbjct: 115 RRVWAEGDSKAVVDVVCDRADVQSEEDLRLCREIAALLPQLDDMAVSHVRRGGNKVAHGF 174
Query: 195 ANMG 198
A +G
Sbjct: 175 AELG 178
>gi|222636103|gb|EEE66235.1| hypothetical protein OsJ_22399 [Oryza sativa Japonica Group]
Length = 192
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 65/124 (52%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L FDG+SK + G A G V R DG+ + E +G AT++VAE AL GL+ A++ G+
Sbjct: 55 LNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALRRGLELAVRNGW 114
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ + +GDSK V + + ++ LC+E L + ++H+ R N A
Sbjct: 115 RRVWAEGDSKAVVDVVCDRADVQSEEDLRLCREIAALLPQLDDMAVSHVRRGGNKVAHGF 174
Query: 195 ANMG 198
A +G
Sbjct: 175 AELG 178
>gi|90265212|emb|CAH67728.1| H0613A10.11 [Oryza sativa Indica Group]
gi|90265218|emb|CAH67666.1| H0315F07.4 [Oryza sativa Indica Group]
Length = 1215
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 12/124 (9%)
Query: 74 TLEFDGA--SKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
T+ FDGA S+G AGAG +L + V + + + + ATNN AEY L+ G++
Sbjct: 871 TMAFDGALNSQG----AGAGFILTSPS---VDQFKHAIHLNFRATNNTAEYEGLLAGIRA 923
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G K + V+GD +LV Q+ +K +N L+ E ++L+++F ++ H+ R N
Sbjct: 924 AAALGVKRLIVKGDFELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDN 983
Query: 189 SEAD 192
E D
Sbjct: 984 IEPD 987
>gi|356519836|ref|XP_003528575.1| PREDICTED: uncharacterized protein LOC100807419 [Glycine max]
Length = 2270
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + + TNN+AEY A ILG++ A+
Sbjct: 1698 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFVCTNNMAEYEACILGIEKAIDL 1753
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1754 RIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKRLLTFFNKVELHHIPRDENQMAD 1813
Query: 193 AQANM 197
A A +
Sbjct: 1814 ALATL 1818
>gi|395646607|ref|ZP_10434467.1| ribonuclease H [Methanofollis liminatans DSM 4140]
gi|395443347|gb|EJG08104.1| ribonuclease H [Methanofollis liminatans DSM 4140]
Length = 140
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG A A A + DG V +GIATNN AEYRA+I L A + +
Sbjct: 12 DGASRGNPGHA-AYAFIFVRDGRAVLERSGYIGIATNNTAEYRAIIAALAEAAKDTDGPV 70
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
RV DS+LV QI G +++N ++L L E L +F S + R
Sbjct: 71 RVYSDSELVIRQITGAYRVNKEHLRDLKDEVLRLAGRFSSVTFASVRR 118
>gi|440577271|emb|CCI55279.1| PH01B001G05.2 [Phyllostachys edulis]
Length = 2097
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
TL FDG+ +GAG VL + G + + ATNNVAEY L+ GL+ A G
Sbjct: 1505 TLYFDGSLMLQ--GSGAGVVLISPTGEHIKYAIQLNFPATNNVAEYEGLLAGLRVARSLG 1562
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ + V+GDS+LV Q+ ++ ++ ++ E ++L++ F FQI HI R N D
Sbjct: 1563 IRRLLVKGDSQLVANQVGKEYQCSSTKMSSYLAEVRKLEKHFFGFQIQHIPRKENFLVDQ 1622
Query: 194 QANMG 198
A M
Sbjct: 1623 LARMA 1627
>gi|50511406|gb|AAT77329.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1467
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 12/123 (9%)
Query: 75 LEFDGA--SKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYA 129
+ FDGA S+G AGAG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 1172 MAFDGALNSQG----AGAGFILTSPSGE---QFKHAIHLNFRATNNTAEYEGLLAGIRAA 1224
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
G K + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ R N
Sbjct: 1225 TALGVKQLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNI 1284
Query: 190 EAD 192
E D
Sbjct: 1285 EPD 1287
>gi|50511389|gb|AAT77312.1| putative polyprotein [Oryza sativa Japonica Group]
gi|50511410|gb|AAT77333.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1551
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 12/126 (9%)
Query: 72 SCTLEFDGA--SKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGL 126
+ T+ FDGA S+G AGAG +L + G + + + + ATNN EY L+ G+
Sbjct: 1008 TWTMAFDGALNSQG----AGAGFILTSPSGD---QFKHAIHLNFRATNNTTEYEGLLAGI 1060
Query: 127 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+ A G K + V+GDSKL+ Q+ +K +N L+ E ++L+ +F ++ H+
Sbjct: 1061 RAAAALGAKRLIVKGDSKLIANQVHKDYKCSNPELSKYLSEVRKLERRFNGIEVRHVYSK 1120
Query: 187 LNSEAD 192
N E D
Sbjct: 1121 DNVEPD 1126
>gi|406948976|gb|EKD79574.1| ribonuclease H, partial [uncultured bacterium]
Length = 122
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
S T DG ++GNPG A +GA E G + +G+ATNN AEY A+I+ L+ A
Sbjct: 3 SVTFFTDGGARGNPGPAASGA-YSPELGE----FKRYLGVATNNQAEYTAIIMALEAAYH 57
Query: 132 KGYKHIRVQG-----DSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+H ++Q DS+L Q+ ++K+ N L L + L KF+ H+ R
Sbjct: 58 YQQQHPQLQEVNMFMDSELAVRQLNRVYKVKNPELQKLFVKVWNLTTKFKKVTFTHVRRE 117
Query: 187 LNSEA 191
N EA
Sbjct: 118 QNKEA 122
>gi|147775038|emb|CAN68243.1| hypothetical protein VITISV_023681 [Vitis vinifera]
Length = 505
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLK 127
L FDGA+ N G G +L + G + R V +A TNN+ EY A I+GL+
Sbjct: 9 LYFDGAA--NQSGFGIGILLISPQGDHIPR---SVWLAFSDHHQLTNNIVEYEACIIGLE 63
Query: 128 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
AL G + + +QGDS LV Q QG+W+ ++ L L ++F + H+ R
Sbjct: 64 IALDLGIRQLEIQGDSNLVIKQTQGIWRTWDEKLKPYHAYLDLLIDRFDVLRYIHLPRAE 123
Query: 188 NSEADAQANMG 198
N ADA A +
Sbjct: 124 NQFADAFATLA 134
>gi|13384382|gb|AAK21350.1|AC024594_14 putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 321
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 10/121 (8%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQ 131
+ FDGA GAG L + G + + + + ATNN AEY L+ G+K A
Sbjct: 131 MAFDGALNSQ----GAGTGLTSPTGD---QFKHAIHLNFRATNNTAEYEGLLAGIKAAAA 183
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + V+GDS+LV Q+ +K +N LA E ++L+ KF ++ H+ R N E
Sbjct: 184 LGVKRLIVKGDSELVANQVHKDYKCSNPELAKYLAEVRKLERKFNDIEVRHVYRKDNVEP 243
Query: 192 D 192
D
Sbjct: 244 D 244
>gi|297725193|ref|NP_001174960.1| Os06g0683500 [Oryza sativa Japonica Group]
gi|52076651|dbj|BAD45551.1| hypothetical protein [Oryza sativa Japonica Group]
gi|255677331|dbj|BAH93688.1| Os06g0683500 [Oryza sativa Japonica Group]
Length = 240
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 65/124 (52%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L FDG+SK + G A G V R DG+ + E +G AT++VAE AL GL+ A++ G+
Sbjct: 89 LNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALRRGLELAVRNGW 148
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ + +GDSK V + + ++ LC+E L + ++H+ R N A
Sbjct: 149 RRVWAEGDSKAVVDVVCDRADVQSEEDLRLCREIAALLPQLDDMAVSHVRRGGNKVAHGF 208
Query: 195 ANMG 198
A +G
Sbjct: 209 AELG 212
>gi|47566073|ref|ZP_00237111.1| RNase H [Bacillus cereus G9241]
gi|47556990|gb|EAL15320.1| RNase H [Bacillus cereus G9241]
Length = 128
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV--QLSLPLGTMSNHEAEYHALLAALKYCMEHNYNIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKTFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|348678932|gb|EGZ18749.1| hypothetical protein PHYSODRAFT_502261 [Phytophthora sojae]
Length = 476
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 172
TNN AEY ALI GL AL G + + V+GDS L+ Q++G + NN L L +A+ L
Sbjct: 78 TNNTAEYIALISGLTGALHHGVRRLTVKGDSTLILEQVRGRYACNNARLRQLRNQARRLL 137
Query: 173 EKFQSFQINHILRNLNSEADAQANMGIYLKDG-QVEAECSS 212
+ +++ H+ R N +AD AN + DG + EC++
Sbjct: 138 RRLDYYELVHVDRLENRDADRLANRAL---DGRRTRTECAT 175
>gi|393201336|ref|YP_006463178.1| ribonuclease HI [Solibacillus silvestris StLB046]
gi|406665577|ref|ZP_11073349.1| 14.7 kDa ribonuclease H-like protein [Bacillus isronensis B3W22]
gi|327440667|dbj|BAK17032.1| ribonuclease HI [Solibacillus silvestris StLB046]
gi|405386442|gb|EKB45869.1| 14.7 kDa ribonuclease H-like protein [Bacillus isronensis B3W22]
Length = 129
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS GNPG +G G ++ E V ++ E +G N+ AE+ AL+ GL+ AL+ G +
Sbjct: 7 DGASAGNPGPSGIGIFIKGEGQHV--KISEPIGNTNNHQAEFTALLRGLEEALKIGSSFV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
V+ DSK+V I + + N++ ++A L E+F F I I N AD A
Sbjct: 65 SVRSDSKIVVSSIDKAY-VKNEDFKPYLEQALSLIEQFDLFFIKWIPEKENKAADVLARE 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|18568246|gb|AAL75983.1|AF466203_12 putative gag-pol precursor -orf2 [Zea mays]
Length = 1007
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDG+ AGAG + + G + Y LR A+NNVAEY AL+ GL+ A++
Sbjct: 459 TMFFDGSLMKT--GAGAGLLFISPLGKHLRYVLRLHFP-ASNNVAEYEALVNGLRIAIKL 515
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + +GDS+LV Q+ + + C E + L++KF ++NHI R N AD
Sbjct: 516 GVRRLDARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFFGLELNHIARRYNETAD 575
Query: 193 AQANMG 198
A +
Sbjct: 576 ELAKIA 581
>gi|398806347|ref|ZP_10565255.1| ribonuclease HI [Polaromonas sp. CF318]
gi|398088264|gb|EJL78830.1| ribonuclease HI [Polaromonas sp. CF318]
Length = 144
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 64/130 (49%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ DG++ NPG+ G GAVL + DG+ G NN AE RAL+ L+ A Q+G
Sbjct: 7 TIHCDGSAVPNPGRMGLGAVLMSPDGTRYPMSAPAEGRGCNNEAELRALMAALQEARQRG 66
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ + D+ +V Q+ G LA L EA+ F S ++ I R+ N EADA
Sbjct: 67 AAALLIHCDNSVVVQQLAGTATEPFLRLAPLFDEARAALLSFASARLVWIPRHRNQEADA 126
Query: 194 QANMGIYLKD 203
A + L
Sbjct: 127 LARAAVGLPP 136
>gi|124359822|gb|ABN06136.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1146
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L FDGA N G GAV+ + G + + TNN+AEY A I G++ A+
Sbjct: 591 LVFDGAV--NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 648
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
KH+ + GDS LV QI+G W+ ++ L A+ L F +++HI R+ N ADA
Sbjct: 649 KHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 708
Query: 195 ANM 197
A +
Sbjct: 709 ATL 711
>gi|395010737|ref|ZP_10394086.1| ribonuclease HI [Acidovorax sp. CF316]
gi|394311185|gb|EJE48565.1| ribonuclease HI [Acidovorax sp. CF316]
Length = 159
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 65/127 (51%), Gaps = 10/127 (7%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIAT-----NNVAEYRALILGLKYALQK 132
DG++ NPG+ G GAVL A DG+ R + AT NN AE RAL++ L AL +
Sbjct: 12 DGSAIPNPGRMGLGAVLVAPDGT-----RHALSQATHATGCNNEAELRALVMALNEALAR 66
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G ++V DS ++ Q+ + + L L A+ L + F QI I R+ N EAD
Sbjct: 67 GASALQVYSDSSILVEQLGEVAAPPIERLEPLYAAARALLKSFDQVQIQWIARHRNGEAD 126
Query: 193 AQANMGI 199
A A +
Sbjct: 127 ALARAAL 133
>gi|449448948|ref|XP_004142227.1| PREDICTED: uncharacterized protein LOC101212475 [Cucumis sativus]
Length = 1388
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 12/135 (8%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVV---YRLREGVGIATNNVAEYRALILGLKYAL 130
T+ FDGA++ + AGAG VL + + ++ + L E + +NNVAEY+ALI+GL+ AL
Sbjct: 906 TMYFDGATRRS--GAGAGIVLISPEKHMLPYSFALSE---LCSNNVAEYQALIIGLQIAL 960
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKI----NNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+ G I V GDSKL+ + L I L A++ EKF + + H+ R
Sbjct: 961 EIGVSFIEVYGDSKLIIIPQLSLSLIYCVERMLALKPYFAYARQSMEKFDNVMLEHVPRV 1020
Query: 187 LNSEADAQANMGIYL 201
N ADA AN+ L
Sbjct: 1021 ENKRADALANLATAL 1035
>gi|77552045|gb|ABA94842.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 731
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 12/127 (9%)
Query: 74 TLEFDGA--SKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
T+ FDGA S+G AGAG +L + G + + + + ATNN AEY L+ G++
Sbjct: 279 TMAFDGALNSQG----AGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRA 331
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G K + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ N
Sbjct: 332 AAALGVKRLIVKGDSELVTNQVHKDYKCSSLELSKYIAEVRKLEKRFDGIEVRHVYHKDN 391
Query: 189 SEADAQA 195
E D A
Sbjct: 392 IEPDDLA 398
>gi|147768439|emb|CAN73637.1| hypothetical protein VITISV_020488 [Vitis vinifera]
Length = 2301
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1726 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1783
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 1784 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEGLRYTHLPRAQNQFAD 1843
Query: 193 AQANMG 198
A A +
Sbjct: 1844 ALATLA 1849
>gi|242095770|ref|XP_002438375.1| hypothetical protein SORBIDRAFT_10g015050 [Sorghum bicolor]
gi|241916598|gb|EER89742.1| hypothetical protein SORBIDRAFT_10g015050 [Sorghum bicolor]
Length = 703
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDG+ AGAG + + G + Y +R A+NNV EY AL GLK A++
Sbjct: 243 TMYFDGSLMKT--GAGAGLLFISPLGVHMRYVIRIHFA-ASNNVMEYEALDNGLKIAIEL 299
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V+GDS+L+ Q+ ++ + CKE + +++KF ++ HI R N AD
Sbjct: 300 GVRRLDVRGDSQLIIDQVMKASNCHDPKMEAYCKEVRRVEDKFHGLELVHIARRYNEAAD 359
Query: 193 AQANMGIYLKDGQVEAECSS 212
A I L G V + S
Sbjct: 360 ELAK--IALTRGTVPPDAFS 377
>gi|110289284|gb|ABG66150.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 536
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQ 131
+ FDGA GAG L + G + + + + ATNN AEY L+ G+K A
Sbjct: 131 MAFDGALNSQ----GAGTGLTSPTGD---QFKHAIHLNFRATNNTAEYEGLLAGIKAAAA 183
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + V+GDS+LV Q+ +K +N LA E ++L+ KF ++ H+ R N E
Sbjct: 184 LGVKRLIVKGDSELVANQVHKDYKCSNPELAKYLAEVRKLERKFNDIEVRHVYRKDNVEP 243
Query: 192 DAQA 195
D A
Sbjct: 244 DDLA 247
>gi|378551377|ref|ZP_09826593.1| hypothetical protein CCH26_14859 [Citricoccus sp. CH26A]
Length = 342
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALIL 124
+P + +E DG S+GNPG AG GA++R G ++ +G A+NNVAEY L+
Sbjct: 1 MPVSERVLQVEADGGSRGNPGVAGYGALVRDPATGKILDIDAAPLGRASNNVAEYSGLVA 60
Query: 125 GLKYA--LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH 182
GL A L + + V+ DSKLV Q+ G WKI + ++ L +A+ + + +
Sbjct: 61 GLTMARNLDPDAR-VHVKMDSKLVVEQMSGRWKIKHADMQKLAGQARAILPQGR-VTYEW 118
Query: 183 ILRNLNSEADAQAN 196
I R N +AD +N
Sbjct: 119 IPREKNKDADLLSN 132
>gi|62734328|gb|AAX96437.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77550054|gb|ABA92851.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 425
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQ 131
+ FDGA N GAG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 1 MAFDGAL--NSQGPGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 55
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 56 LGAKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNVEP 115
Query: 192 DAQA 195
D A
Sbjct: 116 DDLA 119
>gi|397620844|gb|EJK65946.1| hypothetical protein THAOC_13149 [Thalassiosira oceanica]
Length = 305
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 36/170 (21%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAED--GSVVYRLREGVGIA-TNNVAEYRALILGLKYA 129
T+ FDG S+GNPG +GAGA + D G + +RE G TNN AEY L+ GLK A
Sbjct: 126 ITIFFDGGSRGNPGLSGAGAEVTISDGQGGRRFSIREFCGDKQTNNFAEYTGLVAGLKKA 185
Query: 130 ------LQKGYK-------------HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKE 170
L K ++R++GDSKL+ Q G W+ N N+ L ++A
Sbjct: 186 RDIIIGLNKETSVTDASLASRLPIFNLRIRGDSKLIIQQQNGSWQCKNANILPLYRKAAL 245
Query: 171 LKEKFQSFQ------INHILRNLNSEADAQANMGI--------YLKDGQV 206
L + H+ R N AD AN + + +DG++
Sbjct: 246 LVADLRKLDPRSTVTFEHVYREQNKVADNLANEAMDARRSWTTFTEDGEI 295
>gi|108709491|gb|ABF97286.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1515
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N A AG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 929 TMAFDGAL--NSQGARAGFILTSLSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAA 983
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+L+ Q+ +K N L+ E ++L+++F ++ H+ R N E
Sbjct: 984 ALGAKRLIVKGDSELIANQVHKDYKCTNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIE 1043
Query: 191 ADAQA 195
D A
Sbjct: 1044 PDDLA 1048
>gi|390562254|ref|ZP_10244488.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
gi|390173180|emb|CCF83789.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
Length = 139
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 65/116 (56%), Gaps = 12/116 (10%)
Query: 75 LEFDGASKGNPGQAGAGAV-LRAEDGSV-VYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDG + GNPG AG G+ LR +G + RL G + TNN AEYR LI GL+ AL
Sbjct: 12 LVFDGGALGNPG-AGYGSFQLRDREGFCEISRLDFGDNV-TNNQAEYRTLIAGLEAALGH 69
Query: 133 ----GYK----HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 180
G+ +RV+ DS+LV Q+ G WK+ + NL L A+EL +F S I
Sbjct: 70 AGSLGWHPRTLRVRVRTDSQLVVEQVLGRWKVRHPNLQPLSTRARELLARFGSTDI 125
>gi|356498995|ref|XP_003518330.1| PREDICTED: uncharacterized protein LOC100818337 [Glycine max]
Length = 2323
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1751 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1806
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1807 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQMAD 1866
Query: 193 AQANM 197
A A +
Sbjct: 1867 ALATL 1871
>gi|294498230|ref|YP_003561930.1| RNase H [Bacillus megaterium QM B1551]
gi|294348167|gb|ADE68496.1| RNase H [Bacillus megaterium QM B1551]
Length = 132
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
DGA+ GNPG +GAG +++ +R +GI TN+ AEY AL+ LK L+K Y
Sbjct: 6 IDGATAGNPGPSGAGILIKGNGEH--HRYAIALGIMTNHEAEYHALLHALKICLEKKYTS 63
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ + DS+LV + + + N+ A L +EA +L +F+ F I + + N+ AD A
Sbjct: 64 VSFRTDSQLVDRAMNQEY-VKNKAFAPLLEEALKLSSQFELFFIKWVPSSQNAGADQLAR 122
Query: 197 MGIYLKD 203
I K+
Sbjct: 123 QAINQKE 129
>gi|77551183|gb|ABA93980.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1567
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
+ T+ FDGA N AGA +L + G + + + + ATNN AEY L+ G++
Sbjct: 1046 TWTMAFDGAL--NSQGAGARFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRA 1100
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N
Sbjct: 1101 VAALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDN 1160
Query: 189 SEADAQA 195
E D A
Sbjct: 1161 IEPDDLA 1167
>gi|18312884|ref|NP_559551.1| hypothetical protein PAE1792 [Pyrobaculum aerophilum str. IM2]
gi|18160375|gb|AAL63733.1| hypothetical protein PAE1792 [Pyrobaculum aerophilum str. IM2]
Length = 191
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 75 LEFDGASKG-NPGQAGA--------GAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
L FDGA + NPG GA G E G V + G TNN AEY L+
Sbjct: 6 LFFDGACEPVNPGGIGAYGFAAFDEGREAYGEGGVVCF----GERWCTNNYAEYAGLVKA 61
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L++AL G+ + GDS+LV Q+ GL+ + NL L + A EL F+ F I+ + R
Sbjct: 62 LEWALAGGFDCVSAFGDSQLVVRQMLGLYAVRAPNLKPLHERALELSRGFRRFSISWVPR 121
Query: 186 NLNSEAD 192
NS AD
Sbjct: 122 EENSRAD 128
>gi|356519007|ref|XP_003528166.1| PREDICTED: uncharacterized protein LOC100792217 [Glycine max]
Length = 2265
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1693 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1748
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1749 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQMAD 1808
Query: 193 AQANM 197
A A +
Sbjct: 1809 ALATL 1813
>gi|15217214|gb|AAK92558.1|AC051624_16 Putative retroelement [Oryza sativa Japonica Group]
Length = 1429
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FD + + + GAG VL + RL + I A++NV EY AL+ GL+ A+
Sbjct: 1165 TMHFDESKRLS--GTGAGVVLISPTRE---RLSYVLWIHFSASHNVVEYEALLHGLRIAI 1219
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V GDS+LV Q+ W + N+ +E ++L++KF ++ H+L + N
Sbjct: 1220 SLGIRRLIVCGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLLHNNKA 1279
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1280 ADRLANFG 1287
>gi|356561959|ref|XP_003549243.1| PREDICTED: uncharacterized protein LOC100795062 [Glycine max]
Length = 2323
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1751 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1806
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1807 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQMAD 1866
Query: 193 AQANM 197
A A +
Sbjct: 1867 ALATL 1871
>gi|147795549|emb|CAN67747.1| hypothetical protein VITISV_030426 [Vitis vinifera]
Length = 1605
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLKYA 129
FDGA+ N G G +L + G + R V +A NN+ EY A ILGL+ A
Sbjct: 1144 FDGAA--NHSGYGIGVLLISPHGDHIPR---SVHLAFSDRHPAMNNIVEYEACILGLETA 1198
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
L+ G + ++V GDS LV QIQG WK + NL + L +F + H+ R N
Sbjct: 1199 LELGIRQMKVFGDSNLVLRQIQGEWKTRDANLRPYHAYLELLVRRFDDLRYTHLPRVQNQ 1258
Query: 190 EADAQANMG 198
ADA A +
Sbjct: 1259 FADALATLA 1267
>gi|147781100|emb|CAN62911.1| hypothetical protein VITISV_036452 [Vitis vinifera]
Length = 2129
Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1571 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1628
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1629 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVRRFDDLRYTHLPRAQNQFAD 1688
Query: 193 AQANMG 198
A A +
Sbjct: 1689 ALATLA 1694
>gi|356551968|ref|XP_003544344.1| PREDICTED: uncharacterized protein LOC100804218 [Glycine max]
Length = 2290
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1718 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1773
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1774 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQMAD 1833
Query: 193 AQANM 197
A A +
Sbjct: 1834 ALATL 1838
>gi|77555311|gb|ABA98107.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 720
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + GAG VL + G RL + I A++NVAEY L+ GL+ A+
Sbjct: 459 TMHFDGSKRLT--GTGAGLVLISSTGE---RLSYVLWIHFSASHNVAEYEVLLHGLRIAV 513
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+ S+LV ++ W + N+ +E ++L++KF ++ H+L++ N
Sbjct: 514 SLGIRRLIVRRYSQLVVNEVMKEWSCLDDNMTAYQQEVRKLEDKFDGLELTHVLQHNNEA 573
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 574 ADRLANFG 581
>gi|147770667|emb|CAN69026.1| hypothetical protein VITISV_041027 [Vitis vinifera]
Length = 888
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 12/162 (7%)
Query: 57 ADSCLNTQSVPYNCY-SCTLEFDGASKGNPGQAGAGAVLRAEDGSVV---YRLREGVGIA 112
+D L+ + N + S + FDG ++ + G G V ++ + +RE
Sbjct: 485 SDDFLDEEIFYVNFFPSWMMFFDGLARFD--GTGVGVVFVLPQRQILPYSFVIRER---C 539
Query: 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 172
+NNV EY+ALI+GL+ A++ + + GDSKL Q+ L+++ + NL + A +L
Sbjct: 540 SNNVVEYQALIIGLQMAIEMKITSLEICGDSKLEINQLLALYEVKSDNLVPHFQYATQLM 599
Query: 173 EKFQSFQINHILRNLNSEADAQANMG---IYLKDGQVEAECS 211
EKF+ + HI N DA AN+ LKD V S
Sbjct: 600 EKFERISLVHIPPKENQMVDALANLAASLTMLKDETVHVPLS 641
>gi|78708135|gb|ABB47110.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1326
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FD + + + GAG VL + RL + I A++NV EY AL+ GL+ A+
Sbjct: 1062 TMHFDESKRLS--GTGAGVVLISPTRE---RLSYVLWIHFSASHNVVEYEALLHGLRIAI 1116
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V GDS+LV Q+ W + N+ +E ++L++KF ++ H+L + N
Sbjct: 1117 SLGIRRLIVCGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLLHNNKA 1176
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1177 ADRLANFG 1184
>gi|228984776|ref|ZP_04144948.1| hypothetical protein bthur0001_14770 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229155264|ref|ZP_04283375.1| hypothetical protein bcere0010_14570 [Bacillus cereus ATCC 4342]
gi|423576587|ref|ZP_17552706.1| hypothetical protein II9_03808 [Bacillus cereus MSX-D12]
gi|423618166|ref|ZP_17594000.1| hypothetical protein IIO_03492 [Bacillus cereus VD115]
gi|228628189|gb|EEK84905.1| hypothetical protein bcere0010_14570 [Bacillus cereus ATCC 4342]
gi|228774974|gb|EEM23368.1| hypothetical protein bthur0001_14770 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|401207583|gb|EJR14362.1| hypothetical protein II9_03808 [Bacillus cereus MSX-D12]
gi|401253897|gb|EJR60133.1| hypothetical protein IIO_03492 [Bacillus cereus VD115]
Length = 128
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV--QLSLPLGTMSNHEAEYHALLAALKYCMEHNYNIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|359472600|ref|XP_003631172.1| PREDICTED: uncharacterized protein LOC100852915 [Vitis vinifera]
Length = 2212
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1623 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFTDRHPATNNIVEYEACILGLETALEL 1680
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 1681 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDLRYTHLPRAQNQFAD 1740
Query: 193 AQANMG 198
A A +
Sbjct: 1741 ALATLA 1746
>gi|147845704|emb|CAN79906.1| hypothetical protein VITISV_034933 [Vitis vinifera]
Length = 1882
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1694 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFTDRHPATNNIVEYEACILGLETALEL 1751
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 1752 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDLRYTHLPRAQNQFAD 1811
Query: 193 AQANMG 198
A A +
Sbjct: 1812 ALATLA 1817
>gi|407936766|ref|YP_006852407.1| ribonuclease H [Acidovorax sp. KKS102]
gi|407894560|gb|AFU43769.1| ribonuclease H [Acidovorax sp. KKS102]
Length = 165
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 65 SVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIAT-NNVAEYRALI 123
+ P + + DG++ NPG+ G GAVL DG+V +++ E NN AE RAL+
Sbjct: 7 AAPLAPGAWVIHCDGSAWPNPGRMGLGAVLTGPDGTVQHQISEATTFTGCNNEAELRALM 66
Query: 124 LGLKYALQKGY---KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 180
L L++ Q+G + V D+ ++ Q+ LA L EA+E +F Q+
Sbjct: 67 LALQWLAQQGIATSTQVHVFSDNSVLVEQLGSHPTAPITRLATLFDEAREALRQFPQAQV 126
Query: 181 NHILRNLNSEAD--AQANMGIYLK 202
I R+ N AD A+A +G+ K
Sbjct: 127 QWIPRHRNGAADTLARAALGLAPK 150
>gi|147803555|emb|CAN68715.1| hypothetical protein VITISV_004899 [Vitis vinifera]
Length = 2452
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 996 FDGAA--NHSGCGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1053
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1054 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1113
Query: 193 AQANMG 198
A A +
Sbjct: 1114 ALATLA 1119
>gi|133751139|gb|ABO37965.1| putative pol protein [Vitis vinifera]
Length = 276
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 15 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELL 74
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F + H+ R N ADA A +
Sbjct: 75 VGRFDDLRYTHLPRAXNQFADALATLA 101
>gi|319651260|ref|ZP_08005390.1| ribonuclease H [Bacillus sp. 2_A_57_CT2]
gi|317397040|gb|EFV77748.1| ribonuclease H [Bacillus sp. 2_A_57_CT2]
Length = 133
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS GNPG +GAG ++ + V R +G N+ AEYRA I L+ ++KGYK +
Sbjct: 7 DGASAGNPGPSGAGIFIK--NNGQVERYSIPLGKMENHEAEYRAFIHALEICIEKGYKTV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + + N+ A L + A EL +F F + + + N AD A
Sbjct: 65 SFRTDSQLVNRAVEKEF-VKNKKFAPLLENALELTRQFDLFFMKWVPSSENKGADELARA 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|356524171|ref|XP_003530705.1| PREDICTED: uncharacterized protein LOC100812971 [Glycine max]
Length = 2270
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1698 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1753
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1754 KSKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQMAD 1813
Query: 193 AQANM 197
A A +
Sbjct: 1814 ALATL 1818
>gi|110288962|gb|AAP53313.2| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 411
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
+ T+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G+K
Sbjct: 252 TWTMAFDGAL--NNQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIKA 306
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G + + V+GDS+LV Q+ +K ++ L+ E ++L++ F ++ H+ R N
Sbjct: 307 AAALGVRRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKMFNGIEVRHVYRKGN 366
Query: 189 SEAD 192
E D
Sbjct: 367 IEPD 370
>gi|147856817|emb|CAN81341.1| hypothetical protein VITISV_003207 [Vitis vinifera]
Length = 2072
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 48/87 (55%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1610 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDXKLRPYHAYLELL 1669
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F+ + H+ R N ADA A +
Sbjct: 1670 VXRFEDLRYTHLPRAQNQFADALATLA 1696
>gi|147801322|emb|CAN77032.1| hypothetical protein VITISV_015343 [Vitis vinifera]
Length = 2281
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVGI---ATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R + ATNN+ EY A ILGL+ AL+
Sbjct: 1729 FDGAA--NHSGYGVGVLLISPHGDHIPRSVRLAFSVRHPATNNIVEYEACILGLETALEL 1786
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV Q+QG WK + L + L +F + H+ R N D
Sbjct: 1787 GIRQMEVFGDSNLVLRQVQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRARNQFTD 1846
Query: 193 AQANMG 198
A A +
Sbjct: 1847 ALATLA 1852
>gi|110294164|gb|ABG66534.1| reverse transcriptase [Phytophthora ramorum]
Length = 704
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 172
TNN AEY AL+LG++ A G + V+GDS LV Q++G++ + L GL K K
Sbjct: 7 TNNTAEYTALLLGMRAAADHGATRVHVEGDSTLVIQQVRGIFATRSTRLRGLRKSVKAEM 66
Query: 173 EKFQSFQINHILRNLNSEADAQANMGIYLKDGQVE 207
+ + ++HI R N AD AN + + ++E
Sbjct: 67 ARMEHVTLHHIDRQANGHADRLANAALDRRKTKLE 101
>gi|147832775|emb|CAN65896.1| hypothetical protein VITISV_027695 [Vitis vinifera]
Length = 2204
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1644 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1701
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS +V QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 1702 GIRQMEVFGDSNMVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDLRYTHLPRAQNQFAD 1761
Query: 193 AQANM 197
A A +
Sbjct: 1762 ALATL 1766
>gi|336323259|ref|YP_004603226.1| ribonuclease H [Flexistipes sinusarabici DSM 4947]
gi|336106840|gb|AEI14658.1| ribonuclease H [Flexistipes sinusarabici DSM 4947]
Length = 146
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK----- 132
DGA KGNPG AG G V+ +DG VY +G TNN+AEY A++ +K Q+
Sbjct: 7 DGACKGNPGPAGIGFVIYDDDGEKVYECSTYIGEGTNNIAEYTAVLEAIKVIKQRLTEDT 66
Query: 133 -------GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGL-CKEAKELKEKFQSFQINHIL 184
+ + DS+LV Q+ G++K+ + L + K +ELK +++ H+
Sbjct: 67 ANGNLTGKNEKVIFHLDSELVVRQLNGIYKVKDPTLKKIFFKILEELKG--MEYEVVHVP 124
Query: 185 RNLNSEAD 192
R+ N AD
Sbjct: 125 RDQNKVAD 132
>gi|147819107|emb|CAN75602.1| hypothetical protein VITISV_018938 [Vitis vinifera]
Length = 1588
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 48/87 (55%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1050 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDAKLRPYHAYLELL 1109
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F+ + H+ R N ADA A +
Sbjct: 1110 VTRFEDLRYTHLPRAQNQFADALATLA 1136
>gi|57834067|emb|CAD40313.2| OSJNBb0013O03.8 [Oryza sativa Japonica Group]
Length = 717
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 8/132 (6%)
Query: 67 PYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALI 123
P + + T+ FDGA N AGAG +L + G + + + + TNN+AEY L+
Sbjct: 227 PTDNETWTMAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRVTNNIAEYEGLL 281
Query: 124 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 183
G++ A G K + V+GDS+LV Q+ +K ++ L+ E ++L+ +F ++ H+
Sbjct: 282 AGIRAAAALGVKWLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLERRFDGIEVRHV 341
Query: 184 LRNLNSEADAQA 195
N E D A
Sbjct: 342 YHKDNIEPDDLA 353
>gi|20279463|gb|AAM18743.1|AC092548_21 putative polyprotein [Oryza sativa Japonica Group]
Length = 356
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
+ T+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G+K
Sbjct: 197 TWTMAFDGAL--NNQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIKA 251
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G + + V+GDS+LV Q+ +K ++ L+ E ++L++ F ++ H+ R N
Sbjct: 252 AAALGVRRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKMFNGIEVRHVYRKGN 311
Query: 189 SEAD 192
E D
Sbjct: 312 IEPD 315
>gi|402552936|ref|YP_006594207.1| ribonuclease H [Bacillus cereus FRI-35]
gi|401794146|gb|AFQ08005.1| ribonuclease H [Bacillus cereus FRI-35]
Length = 128
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV--QLSLPLGTMSNHEAEYHALLAALKYCMEHNYNIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALHYIKSFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|356561241|ref|XP_003548891.1| PREDICTED: uncharacterized protein LOC100803738 [Glycine max]
Length = 2190
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + T N+AEY A ILG++ A+
Sbjct: 1618 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTKNMAEYEACILGIEKAIDL 1673
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1674 GIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKRLLTFFNKVELHHIPRDENQMAD 1733
Query: 193 AQANM 197
A A +
Sbjct: 1734 ALATL 1738
>gi|62733850|gb|AAX95959.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77550305|gb|ABA93102.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1600
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N GAG +L + + + + + ATNN AEY L+ G++ A
Sbjct: 1033 TMAFDGAL--NSQATGAGFILMSPSRD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAA 1087
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + ++GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 1088 ALGVKRLIMKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIE 1147
Query: 191 ADAQA 195
D A
Sbjct: 1148 PDDLA 1152
>gi|147790268|emb|CAN74495.1| hypothetical protein VITISV_026191 [Vitis vinifera]
Length = 2172
Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1624 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1681
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + + L +F+ + H+ R N AD
Sbjct: 1682 GIRQMEVFGDSNLVLRQIQGEWKTRDVKFRPYQSYLELLVARFEDLKYTHLPRAQNQFAD 1741
Query: 193 AQANMG 198
A A +
Sbjct: 1742 ALATLA 1747
>gi|54291863|gb|AAV32231.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 3092
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 72 SCTLEFDGA--SKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGL 126
+ T+ FDGA S+G AGAG +L + G + + + + ATNN+ EY L+ G+
Sbjct: 2633 TWTMAFDGALNSQG----AGAGFILTSPSGD---QFKHAIHLNFRATNNIVEYEGLLAGI 2685
Query: 127 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+ A G K + V+GD +LV Q+ +K +N L+ E +L++ F ++ HI R
Sbjct: 2686 RAAAALGVKRLIVKGDFELVANQVHKDYKCSNPELSKYLAEVSKLEKMFDGIEVRHIYRK 2745
Query: 187 LNSEADAQA 195
N E D A
Sbjct: 2746 DNIEQDDLA 2754
>gi|224147145|ref|XP_002336419.1| predicted protein [Populus trichocarpa]
gi|222834953|gb|EEE73402.1| predicted protein [Populus trichocarpa]
Length = 533
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDG---SVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+ FDGA N GAGAV+ + D V +L+ G TNN AEY A ILGL+ AL+
Sbjct: 349 MYFDGAV--NVYGNGAGAVIISPDKKQYPVSVKLQFG---CTNNTAEYEACILGLEAALE 403
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+ I V GDS L+ Q++G W+ + L + +L +F+ + H+ R N A
Sbjct: 404 LNIRKIDVYGDSMLIICQVKGEWQTKEEKLRPYQEYLSKLAREFEEIEFTHLGREGNQFA 463
Query: 192 DAQANMG 198
DA A +
Sbjct: 464 DALATLA 470
>gi|356565782|ref|XP_003551116.1| PREDICTED: uncharacterized protein LOC100792455 [Glycine max]
Length = 974
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 77 FDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 135
FDGAS N G GAVL +D + + R G TNN+AEY A LG++ A+ K
Sbjct: 404 FDGAS--NALGHGVGAVLVSPDDQCIPFTARLGFD-CTNNMAEYEACALGVQAAIDFDVK 460
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 195
++V GDS LV Q++G W+ + L L + F + +HI R N ADA A
Sbjct: 461 LLKVYGDSALVIRQLKGEWETRDSKLIPYQTHILRLAKYFDAISFHHIPREENQMADALA 520
Query: 196 NMG 198
+
Sbjct: 521 TLA 523
>gi|359477856|ref|XP_003632035.1| PREDICTED: uncharacterized protein LOC100854167 [Vitis vinifera]
Length = 2300
Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LR---EGVGIATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R TNN+ EY A ILGL+ AL+
Sbjct: 1716 FDGAA--NHSGYGIGVLLVSPQGDHIPRSVRLTFPNYHPTTNNIVEYEACILGLETALEL 1773
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + V GDS LV Q+QG WK + L + L EKF+ + H+ R N AD
Sbjct: 1774 GITQMDVLGDSNLVLRQVQGDWKTRDAKLKPYHAYLELLIEKFEELKYIHLPRAHNQFAD 1833
Query: 193 AQANMG 198
A A +
Sbjct: 1834 ALATLA 1839
>gi|359484844|ref|XP_003633174.1| PREDICTED: uncharacterized protein LOC100855346 [Vitis vinifera]
Length = 1966
Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1353 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1410
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1411 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1470
Query: 193 AQANMG 198
A A +
Sbjct: 1471 ALATLA 1476
>gi|359474418|ref|XP_003631459.1| PREDICTED: uncharacterized protein LOC100853395 [Vitis vinifera]
Length = 2434
Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1791 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1848
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1849 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1908
Query: 193 AQANMG 198
A A +
Sbjct: 1909 ALATLA 1914
>gi|332983014|ref|YP_004464455.1| ribonuclease H [Mahella australiensis 50-1 BON]
gi|332700692|gb|AEE97633.1| ribonuclease H [Mahella australiensis 50-1 BON]
Length = 287
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 71 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL 130
Y T+ DGA GNPG G G V+ + G ++ E G TNN AEY A+I L+Y +
Sbjct: 15 YQYTVNVDGACAGNPGLMGIGGVI-VKSGETIHSFSEAKGFGTNNEAEYLAVITALEYMI 73
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
+ + + DS+LV QI G++ IN +LA L + L
Sbjct: 74 PLCPESVIIISDSQLVVNQINGIYGINYPHLAKLFNRVQTL 114
>gi|147852267|emb|CAN80129.1| hypothetical protein VITISV_018340 [Vitis vinifera]
Length = 2285
Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1732 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1789
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1790 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1849
Query: 193 AQANMG 198
A A +
Sbjct: 1850 ALATLA 1855
>gi|147843786|emb|CAN79456.1| hypothetical protein VITISV_004376 [Vitis vinifera]
Length = 2080
Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1543 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1600
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1601 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1660
Query: 193 AQANMG 198
A A +
Sbjct: 1661 ALATLA 1666
>gi|147781249|emb|CAN74038.1| hypothetical protein VITISV_028523 [Vitis vinifera]
Length = 2317
Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1742 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1799
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1800 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1859
Query: 193 AQANMG 198
A A +
Sbjct: 1860 ALATLA 1865
>gi|359485628|ref|XP_003633300.1| PREDICTED: uncharacterized protein LOC100854777 [Vitis vinifera]
Length = 2323
Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1727 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1784
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1785 GIRQMEVFGDSSLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1844
Query: 193 AQANMG 198
A A +
Sbjct: 1845 ALATLA 1850
>gi|356566612|ref|XP_003551524.1| PREDICTED: uncharacterized protein LOC100805548 [Glycine max]
Length = 2323
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1751 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1806
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1807 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQMAD 1866
Query: 193 AQANM 197
A A +
Sbjct: 1867 ALATL 1871
>gi|359475724|ref|XP_003631741.1| PREDICTED: uncharacterized protein LOC100260551 [Vitis vinifera]
Length = 1856
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLKYA 129
FDGA+ N G G +L + G + R V + TNN+ EY A ILGL+ A
Sbjct: 1281 FDGAA--NHSGYGIGVLLVSPQGDHIPR---SVRLTFPDYYPTTNNIVEYEACILGLETA 1335
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
L+ G + V GDS LV Q+QG WK + L + L EKF+ + H+ R N
Sbjct: 1336 LELGITQVDVLGDSNLVLRQVQGDWKTRDAKLKPCHAYLELLIEKFEELKYIHLPRAHNQ 1395
Query: 190 EADAQANMG 198
ADA A +
Sbjct: 1396 FADALATLA 1404
>gi|242044120|ref|XP_002459931.1| hypothetical protein SORBIDRAFT_02g017020 [Sorghum bicolor]
gi|241923308|gb|EER96452.1| hypothetical protein SORBIDRAFT_02g017020 [Sorghum bicolor]
Length = 802
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 51/87 (58%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
A+NNVAEY A + G++ A++ G K + V GDS LV Q+ W ++ + CKE ++
Sbjct: 321 ASNNVAEYEACLHGIRLAVELGVKRLYVYGDSALVVNQLNKEWDATHEKMDLYCKEIRKW 380
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+ F + H++R+ N ADA + +G
Sbjct: 381 ETNFYGIEYIHVVRDKNQAADALSKLG 407
>gi|147767517|emb|CAN66714.1| hypothetical protein VITISV_041527 [Vitis vinifera]
Length = 2066
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LR---EGVGIATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R TNN+ EY A ILGL+ AL+
Sbjct: 1491 FDGAA--NHSGYGIGVLLVSPQGDHIPRSVRLTFPBYHPTTNNIVEYEACILGLETALEL 1548
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + V GDS LV Q+QG WK + L + L EKF+ + H+ R N AD
Sbjct: 1549 GITQMDVLGDSNLVLRQVQGDWKTRDXKLKPYHAYLELLIEKFEELKYIHLPRAHNQFAD 1608
Query: 193 AQANMG 198
A A +
Sbjct: 1609 ALATLA 1614
>gi|242034263|ref|XP_002464526.1| hypothetical protein SORBIDRAFT_01g020096 [Sorghum bicolor]
gi|241918380|gb|EER91524.1| hypothetical protein SORBIDRAFT_01g020096 [Sorghum bicolor]
Length = 113
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 172
+NN AEY AL+ GLK A++ G + + V+GDS+LV Q+ ++ + CKE + L+
Sbjct: 26 SNNAAEYEALVNGLKIAIELGVRRLDVRGDSRLVIDQVMKTSSCHDPKMEAYCKEVRRLE 85
Query: 173 EKFQSFQINHILRNLNSEADAQANMG 198
KF ++ HI R N AD A +
Sbjct: 86 GKFHGLELVHIARRYNEAADELAKIA 111
>gi|147828215|emb|CAN77782.1| hypothetical protein VITISV_018671 [Vitis vinifera]
Length = 1996
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 48/87 (55%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1521 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELL 1580
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F+ + H+ R N ADA A +
Sbjct: 1581 VARFEDLRYTHLPRXQNQFADALATLA 1607
>gi|18568245|gb|AAL75982.1|AF466203_11 putative prpol [Zea mays]
Length = 1854
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDG+ AGAG + + G + Y LR A+NNVAEY AL+ GL+ A++
Sbjct: 1324 TMFFDGSLMKT--GAGAGLLFISPLGKHLRYVLRLHFP-ASNNVAEYEALVNGLRIAIEL 1380
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + +GDS+LV Q+ + + C E + L++KF ++NHI R N AD
Sbjct: 1381 GVIRLDARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFFGLELNHIARRYNETAD 1440
Query: 193 AQANMG 198
A +
Sbjct: 1441 ELAKIA 1446
>gi|356503020|ref|XP_003520310.1| PREDICTED: uncharacterized protein LOC100811791 [Glycine max]
Length = 1289
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVV-YRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDGAS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 1047 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1103
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GD LV Q++G W+ + L KEL + F +H+ R N AD
Sbjct: 1104 NVKLLKVYGDLALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMAD 1163
Query: 193 AQANMG 198
A A +
Sbjct: 1164 ALATLA 1169
>gi|38344792|emb|CAE02993.2| OSJNBa0043L09.12 [Oryza sativa Japonica Group]
Length = 1120
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + V + + + + ATNN AEY L+ G + A
Sbjct: 757 TMAFDGAL--NSQGAGAGFILTSPS---VDQFKHAIHLNFRATNNTAEYEGLLAGTRAAA 811
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GD +LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 812 ALGVKRLIVKGDFELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIE 871
Query: 191 ADAQA 195
D A
Sbjct: 872 PDDLA 876
>gi|374325633|ref|YP_005083830.1| ribonuclease H [Pyrobaculum sp. 1860]
gi|356640899|gb|AET31578.1| ribonuclease H [Pyrobaculum sp. 1860]
Length = 193
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 77 FDGASKG-NPGQAGA--GAVLRAE-----DGSVVYRLREGVGIATNNVAEYRALILGLKY 128
FDGA + NPG GA AV E +G VV G TNN AEY AL+ L++
Sbjct: 13 FDGACEPVNPGGVGAYGFAVFDGEREVYGEGGVVC---VGERWCTNNYAEYSALVRALEW 69
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
AL G + + V GDS+LV Q+ G + + +L L + A EL +F+ F I+ + R N
Sbjct: 70 ALSNGVECVAVYGDSQLVVRQVLGEYAVRAPHLKPLYERALELAGRFKGFSISWVPRGEN 129
Query: 189 SEAD 192
S AD
Sbjct: 130 SRAD 133
>gi|356522885|ref|XP_003530073.1| PREDICTED: uncharacterized protein LOC100789592 [Glycine max]
Length = 2315
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1743 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1798
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1799 RIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQMAD 1858
Query: 193 AQANM 197
A A +
Sbjct: 1859 ALATL 1863
>gi|46575949|gb|AAT01310.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 908
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 14/128 (10%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 341 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 395
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + LV Q+ W + N+ +E ++L++KF+ +++H+LR+ N
Sbjct: 396 SLGIKRL------ILVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVLRHNNEA 449
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 450 ADRLANFG 457
>gi|147775414|emb|CAN64945.1| hypothetical protein VITISV_019048 [Vitis vinifera]
Length = 1929
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G +L + G + R +R +ATNN+ EY A ILGL+ AL+
Sbjct: 1414 FDGAA--NHSGYGISVLLISPHGDHIPRSIRLAFSDRHLATNNIVEYEACILGLETALEL 1471
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L L +F+ + H+ R N AD
Sbjct: 1472 GIRQMEVFGDSNLVLRQIQGEWKTRDGKLRPYHAYLALLVARFEDLRYTHLPRVRNQFAD 1531
Query: 193 AQANMG 198
A A +
Sbjct: 1532 ALATLA 1537
>gi|32483247|emb|CAE02548.1| OSJNBb0069N01.14 [Oryza sativa Japonica Group]
Length = 722
Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
Query: 47 SINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLR 106
S+ + R LN + C+ VP + FDG+ N AGAG L + G V+ +
Sbjct: 579 SLRSTRMKLNPEKCVF--GVP------VMHFDGSL--NLQGAGAGVTLTSPSGDVLKYVV 628
Query: 107 EGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCK 166
ATNN+ EY L++GL+ + G + + V GDS+LV Q+ ++ + + +
Sbjct: 629 RLDFRATNNMVEYEGLLVGLRAVARVGIRRLIVLGDSQLVVNQVSKEYQCTDPQMDAYVR 688
Query: 167 EAKELKEKFQSFQINHILRNLNSEAD 192
E + ++ F ++ HI R N+ AD
Sbjct: 689 EVRRMERHFDGLELRHIPRRDNAVAD 714
>gi|18568254|gb|AAL75988.1|AF466204_3 putative GAG-POL precursor -orf2 protein [Sorghum bicolor]
Length = 756
Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 61 LNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYR 120
LN VP ++ FDG+ N AGAG + + + + + + A+NNVAEY
Sbjct: 269 LNEPPVPDVSDHWSMFFDGSL--NINGAGAGILFVSPNKDKLRYILRILFPASNNVAEYE 326
Query: 121 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 180
A + G++ A++ G K + V GD LV Q+ W ++ + C E ++ + F +
Sbjct: 327 ACLHGIRLAVELGIKRLYVYGDFALVINQLNKEWDATHEKMDLYCNEIRKWETNFYGIEY 386
Query: 181 NHILRNLNSEADAQANMG 198
H++R+ N ADA + +G
Sbjct: 387 IHVVRDKNQAADALSKLG 404
>gi|147793981|emb|CAN77844.1| hypothetical protein VITISV_028932 [Vitis vinifera]
Length = 1928
Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1500 FDGAA--NHSGYGLGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1557
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1558 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1617
Query: 193 AQANMG 198
A A +
Sbjct: 1618 ALATLA 1623
>gi|301053232|ref|YP_003791443.1| ribonuclease H [Bacillus cereus biovar anthracis str. CI]
gi|300375401|gb|ADK04305.1| ribonuclease H [Bacillus cereus biovar anthracis str. CI]
Length = 128
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV--QLSLPLGTMSNHEAEYHALLTALKYCTEHNYNIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|295703581|ref|YP_003596656.1| RNase H [Bacillus megaterium DSM 319]
gi|294801240|gb|ADF38306.1| RNase H [Bacillus megaterium DSM 319]
Length = 133
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
DGA+ GNPG +GAG +++ +R +G TN+ AEY AL+ LK L+K Y
Sbjct: 7 IDGATAGNPGPSGAGILIKGNGEH--HRYAIALGTMTNHEAEYHALLHALKICLEKKYTS 64
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ + DS+LV + + + N+ A L +EA +L +F+ F I I + N+ AD A
Sbjct: 65 VSFRTDSQLVDRAMNQEY-VKNKAFAPLLEEALKLSSQFELFFIKWIPSSQNAGADQLAR 123
Query: 197 MGIYLKD 203
I K+
Sbjct: 124 QAINQKE 130
>gi|19881548|gb|AAM00949.1|AC021892_13 Putative retroelement [Oryza sativa Japonica Group]
gi|31431082|gb|AAP52913.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1945
Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 26/128 (20%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1390 TMHFDGSKRLS--GTGAGVVLISPTGE---RLSYVLWIHFSASHNVAEYEALLHGLRIAI 1444
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDS+LV Q+ ++L++KF+ +++H+LR+ N
Sbjct: 1445 SLGIKRLIVRGDSQLVVNQV------------------RKLEDKFEGLELSHVLRHNNEA 1486
Query: 191 ADAQANMG 198
AD AN G
Sbjct: 1487 ADRLANFG 1494
>gi|406931471|gb|EKD66754.1| ribonuclease H [uncultured bacterium (gcode 4)]
Length = 153
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
D ++ NPG +G G + E+ + + + +GI TNN AEY + ++ A++ K I
Sbjct: 8 DWWARWNPGISGIGVYITDENNCCIEKRYKWLGIKTNNQAEYLGALHWIERAIELEAKEI 67
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEA-KELKEKFQSFQINHILRNLNSEADAQAN 196
+ DS+LV Q+ G++KI NQ LA + E K + + HI R N EAD +N
Sbjct: 68 ELYMDSQLVVNQLSGIFKIKNQELAEIRLEIQKAINTWWWKISFYHIPREKNKEADRLSN 127
Query: 197 MGI 199
+ +
Sbjct: 128 IAM 130
>gi|242039467|ref|XP_002467128.1| hypothetical protein SORBIDRAFT_01g020093 [Sorghum bicolor]
gi|241920982|gb|EER94126.1| hypothetical protein SORBIDRAFT_01g020093 [Sorghum bicolor]
Length = 114
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 62/114 (54%)
Query: 88 AGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVC 147
AGAG + + + + + + A+NNV EY A + G++ A++ G K + V GDS LV
Sbjct: 1 AGAGILFVSPNKDKLRYVLRILLPASNNVTEYEACLHGIRLAIELGVKRLYVYGDSALVI 60
Query: 148 MQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYL 201
Q+ W ++ + CKE ++ + F + H++R+ N ADA +N ++L
Sbjct: 61 NQLNKEWDATHEKMDLYCKEIRKWETNFYGIEYVHVVRDKNQAADAMSNSALFL 114
>gi|356566094|ref|XP_003551270.1| PREDICTED: uncharacterized protein LOC100784162 [Glycine max]
Length = 1145
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVV-YRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FD AS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 1019 TVWFDEAS--NILGHGVGAVLVSPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1075
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N AD
Sbjct: 1076 NVKLLKVYGDSALVIHQLRGEWETRDPKLIPYKTYIKELAKNFDEISFHHVPREENQMAD 1135
Query: 193 AQANMG 198
A A +
Sbjct: 1136 ALATLA 1141
>gi|42780788|ref|NP_978035.1| ribonuclease H [Bacillus cereus ATCC 10987]
gi|42736708|gb|AAS40643.1| RNase H [Bacillus cereus ATCC 10987]
Length = 128
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV--QLSFPLGTMSNHEAEYHALLAALKYCTEHNYNIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|32488016|emb|CAE02879.1| OSJNBb0022F23.16 [Oryza sativa Japonica Group]
Length = 550
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQ 131
+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 1 MAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 55
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + ++GDS+LV + +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 56 LGVKRLIMKGDSELVANHVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 115
Query: 192 DAQA 195
D A
Sbjct: 116 DELA 119
>gi|398304161|ref|ZP_10507747.1| ribonuclease H [Bacillus vallismortis DV1-F-3]
Length = 132
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS GNPG +G G ++ E + + + +G+ TN AE+RALI G+K ++GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHEGQAESFSI--PIGMHTNQEAEFRALIEGMKLCAKRGYQSV 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 66 SFRTDSDIVERAAE-LEMVKNKMFHPYVEEIIRLKAAFPLFFIKWIPGKQNQKADQLAKE 124
Query: 198 GIYLKD 203
I L D
Sbjct: 125 AIRLND 130
>gi|14091854|gb|AAK53857.1|AC016781_11 Putative retroelement [Oryza sativa Japonica Group]
gi|108709345|gb|ABF97140.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1541
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 944 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1000
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + +RV GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1001 LRVAAGLGIRRLRVLGDSQLVVNQVCKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1060
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1061 RDNAVAD 1067
>gi|147790735|emb|CAN59929.1| hypothetical protein VITISV_023498 [Vitis vinifera]
Length = 1839
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LR---EGVGIATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R TNN+ EY A ILGL+ AL+
Sbjct: 1481 FDGAA--NHSGYGIGVLLVSPQGDHIPRSVRLTFPBYYPTTNNIVEYEACILGLETALEL 1538
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + V GDS LV Q+QG WK + L + L EKF+ + H+ R N AD
Sbjct: 1539 GITQMDVLGDSNLVLRQVQGDWKTRDAKLKPYHAYLELLIEKFEELKYIHLPRAHNQFAD 1598
Query: 193 AQANMG 198
A A +
Sbjct: 1599 ALATLA 1604
>gi|147860783|emb|CAN83164.1| hypothetical protein VITISV_002083 [Vitis vinifera]
Length = 488
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLK 127
L FDGA N G G +L + G + R V +A TNN+ +Y A ILGL+
Sbjct: 100 LYFDGAX--NQLXYGIGVLLVSPXGDXIPR---SVRLAFHDRHPITNNIVKYEACILGLE 154
Query: 128 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
AL+ G + + V GDS LV QIQG WK + L + L +F + H+ +
Sbjct: 155 TALELGIRQMXVFGDSNLVLRQIQGDWKTRDVKLXPYHAYLELLVARFDDLRYVHLPKAX 214
Query: 188 NSEADAQANMG 198
N ADA A +
Sbjct: 215 NXFADALATLA 225
>gi|30261693|ref|NP_844070.1| ribonuclease H [Bacillus anthracis str. Ames]
gi|47526908|ref|YP_018257.1| ribonuclease H [Bacillus anthracis str. 'Ames Ancestor']
gi|49184522|ref|YP_027774.1| ribonuclease H [Bacillus anthracis str. Sterne]
gi|49477289|ref|YP_035811.1| ribonuclease H [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52143763|ref|YP_083064.1| ribonuclease H [Bacillus cereus E33L]
gi|65318963|ref|ZP_00391922.1| COG0328: Ribonuclease HI [Bacillus anthracis str. A2012]
gi|118477133|ref|YP_894284.1| ribonuclease H [Bacillus thuringiensis str. Al Hakam]
gi|165869270|ref|ZP_02213929.1| RNase H [Bacillus anthracis str. A0488]
gi|167633323|ref|ZP_02391648.1| RNase H [Bacillus anthracis str. A0442]
gi|167639074|ref|ZP_02397347.1| RNase H [Bacillus anthracis str. A0193]
gi|170686199|ref|ZP_02877421.1| RNase H [Bacillus anthracis str. A0465]
gi|170706468|ref|ZP_02896928.1| RNase H [Bacillus anthracis str. A0389]
gi|177650395|ref|ZP_02933362.1| RNase H [Bacillus anthracis str. A0174]
gi|190566405|ref|ZP_03019323.1| RNase H [Bacillus anthracis str. Tsiankovskii-I]
gi|196033486|ref|ZP_03100898.1| RNase H [Bacillus cereus W]
gi|196046566|ref|ZP_03113790.1| RNase H [Bacillus cereus 03BB108]
gi|206974875|ref|ZP_03235790.1| RNase H [Bacillus cereus H3081.97]
gi|217959173|ref|YP_002337721.1| ribonuclease H [Bacillus cereus AH187]
gi|218902808|ref|YP_002450642.1| ribonuclease H [Bacillus cereus AH820]
gi|222095315|ref|YP_002529375.1| ribonuclease h [Bacillus cereus Q1]
gi|225863552|ref|YP_002748930.1| RNase H [Bacillus cereus 03BB102]
gi|227815554|ref|YP_002815563.1| ribonuclease H [Bacillus anthracis str. CDC 684]
gi|228907332|ref|ZP_04071190.1| hypothetical protein bthur0013_14990 [Bacillus thuringiensis IBL
200]
gi|228914272|ref|ZP_04077887.1| hypothetical protein bthur0012_15040 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228926728|ref|ZP_04089796.1| hypothetical protein bthur0010_14440 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228932978|ref|ZP_04095841.1| hypothetical protein bthur0009_14490 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228945296|ref|ZP_04107651.1| hypothetical protein bthur0007_14590 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229029371|ref|ZP_04185456.1| hypothetical protein bcere0028_14620 [Bacillus cereus AH1271]
gi|229090653|ref|ZP_04221886.1| hypothetical protein bcere0021_14770 [Bacillus cereus Rock3-42]
gi|229121245|ref|ZP_04250476.1| hypothetical protein bcere0016_15510 [Bacillus cereus 95/8201]
gi|229132508|ref|ZP_04261358.1| hypothetical protein bcere0014_14410 [Bacillus cereus BDRD-ST196]
gi|229138389|ref|ZP_04266980.1| hypothetical protein bcere0013_15080 [Bacillus cereus BDRD-ST26]
gi|229172337|ref|ZP_04299897.1| hypothetical protein bcere0006_14480 [Bacillus cereus MM3]
gi|229183884|ref|ZP_04311100.1| hypothetical protein bcere0004_14510 [Bacillus cereus BGSC 6E1]
gi|229195904|ref|ZP_04322658.1| hypothetical protein bcere0001_14660 [Bacillus cereus m1293]
gi|229601488|ref|YP_002866097.1| ribonuclease H [Bacillus anthracis str. A0248]
gi|254683182|ref|ZP_05147043.1| ribonuclease H [Bacillus anthracis str. CNEVA-9066]
gi|254723771|ref|ZP_05185557.1| ribonuclease H [Bacillus anthracis str. A1055]
gi|254734534|ref|ZP_05192246.1| ribonuclease H [Bacillus anthracis str. Western North America
USA6153]
gi|254740943|ref|ZP_05198631.1| ribonuclease H [Bacillus anthracis str. Kruger B]
gi|254755185|ref|ZP_05207219.1| ribonuclease H [Bacillus anthracis str. Vollum]
gi|254759721|ref|ZP_05211745.1| ribonuclease H [Bacillus anthracis str. Australia 94]
gi|300117384|ref|ZP_07055174.1| ribonuclease H [Bacillus cereus SJ1]
gi|375283670|ref|YP_005104108.1| RNase H [Bacillus cereus NC7401]
gi|376265531|ref|YP_005118243.1| RNase H [Bacillus cereus F837/76]
gi|384179629|ref|YP_005565391.1| ribonuclease H [Bacillus thuringiensis serovar finitimus YBT-020]
gi|386735402|ref|YP_006208583.1| RNase HI [Bacillus anthracis str. H9401]
gi|421508353|ref|ZP_15955267.1| ribonuclease H [Bacillus anthracis str. UR-1]
gi|421638703|ref|ZP_16079298.1| ribonuclease H [Bacillus anthracis str. BF1]
gi|423353827|ref|ZP_17331453.1| hypothetical protein IAU_01902 [Bacillus cereus IS075]
gi|423371669|ref|ZP_17349009.1| hypothetical protein IC5_00725 [Bacillus cereus AND1407]
gi|423403791|ref|ZP_17380964.1| hypothetical protein ICW_04189 [Bacillus cereus BAG2X1-2]
gi|423420364|ref|ZP_17397453.1| hypothetical protein IE3_03836 [Bacillus cereus BAG3X2-1]
gi|423460434|ref|ZP_17437231.1| hypothetical protein IEI_03574 [Bacillus cereus BAG5X2-1]
gi|423475579|ref|ZP_17452294.1| hypothetical protein IEO_01037 [Bacillus cereus BAG6X1-1]
gi|423552569|ref|ZP_17528896.1| hypothetical protein IGW_03200 [Bacillus cereus ISP3191]
gi|423569393|ref|ZP_17545639.1| hypothetical protein II7_02615 [Bacillus cereus MSX-A12]
gi|423606583|ref|ZP_17582476.1| hypothetical protein IIK_03164 [Bacillus cereus VD102]
gi|30255921|gb|AAP25556.1| ribonuclease H [Bacillus anthracis str. Ames]
gi|47502056|gb|AAT30732.1| RNase H [Bacillus anthracis str. 'Ames Ancestor']
gi|49178449|gb|AAT53825.1| RNase H [Bacillus anthracis str. Sterne]
gi|49328845|gb|AAT59491.1| ribonuclease HI [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51977232|gb|AAU18782.1| ribonuclease HI [Bacillus cereus E33L]
gi|118416358|gb|ABK84777.1| RNase HI [Bacillus thuringiensis str. Al Hakam]
gi|164714710|gb|EDR20228.1| RNase H [Bacillus anthracis str. A0488]
gi|167512864|gb|EDR88237.1| RNase H [Bacillus anthracis str. A0193]
gi|167531361|gb|EDR94039.1| RNase H [Bacillus anthracis str. A0442]
gi|170128566|gb|EDS97433.1| RNase H [Bacillus anthracis str. A0389]
gi|170669896|gb|EDT20637.1| RNase H [Bacillus anthracis str. A0465]
gi|172083539|gb|EDT68599.1| RNase H [Bacillus anthracis str. A0174]
gi|190562540|gb|EDV16507.1| RNase H [Bacillus anthracis str. Tsiankovskii-I]
gi|195993920|gb|EDX57876.1| RNase H [Bacillus cereus W]
gi|196022499|gb|EDX61182.1| RNase H [Bacillus cereus 03BB108]
gi|206746894|gb|EDZ58286.1| RNase H [Bacillus cereus H3081.97]
gi|217065502|gb|ACJ79752.1| RNase H [Bacillus cereus AH187]
gi|218537064|gb|ACK89462.1| RNase H [Bacillus cereus AH820]
gi|221239373|gb|ACM12083.1| ribonuclease HI [Bacillus cereus Q1]
gi|225787336|gb|ACO27553.1| ribonuclease H [Bacillus cereus 03BB102]
gi|227006694|gb|ACP16437.1| ribonuclease H [Bacillus anthracis str. CDC 684]
gi|228587546|gb|EEK45610.1| hypothetical protein bcere0001_14660 [Bacillus cereus m1293]
gi|228599536|gb|EEK57140.1| hypothetical protein bcere0004_14510 [Bacillus cereus BGSC 6E1]
gi|228611133|gb|EEK68395.1| hypothetical protein bcere0006_14480 [Bacillus cereus MM3]
gi|228645060|gb|EEL01301.1| hypothetical protein bcere0013_15080 [Bacillus cereus BDRD-ST26]
gi|228650945|gb|EEL06930.1| hypothetical protein bcere0014_14410 [Bacillus cereus BDRD-ST196]
gi|228662090|gb|EEL17699.1| hypothetical protein bcere0016_15510 [Bacillus cereus 95/8201]
gi|228692595|gb|EEL46321.1| hypothetical protein bcere0021_14770 [Bacillus cereus Rock3-42]
gi|228731931|gb|EEL82828.1| hypothetical protein bcere0028_14620 [Bacillus cereus AH1271]
gi|228814268|gb|EEM60534.1| hypothetical protein bthur0007_14590 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228826579|gb|EEM72350.1| hypothetical protein bthur0009_14490 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228832841|gb|EEM78410.1| hypothetical protein bthur0010_14440 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228845266|gb|EEM90302.1| hypothetical protein bthur0012_15040 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228852193|gb|EEM96989.1| hypothetical protein bthur0013_14990 [Bacillus thuringiensis IBL
200]
gi|229265896|gb|ACQ47533.1| ribonuclease H [Bacillus anthracis str. A0248]
gi|298725219|gb|EFI65871.1| ribonuclease H [Bacillus cereus SJ1]
gi|324325713|gb|ADY20973.1| ribonuclease H [Bacillus thuringiensis serovar finitimus YBT-020]
gi|358352196|dbj|BAL17368.1| RNase H [Bacillus cereus NC7401]
gi|364511331|gb|AEW54730.1| RNase H [Bacillus cereus F837/76]
gi|384385254|gb|AFH82915.1| RNase HI [Bacillus anthracis str. H9401]
gi|401088509|gb|EJP96695.1| hypothetical protein IAU_01902 [Bacillus cereus IS075]
gi|401100753|gb|EJQ08746.1| hypothetical protein IC5_00725 [Bacillus cereus AND1407]
gi|401102273|gb|EJQ10260.1| hypothetical protein IE3_03836 [Bacillus cereus BAG3X2-1]
gi|401140487|gb|EJQ48043.1| hypothetical protein IEI_03574 [Bacillus cereus BAG5X2-1]
gi|401186511|gb|EJQ93599.1| hypothetical protein IGW_03200 [Bacillus cereus ISP3191]
gi|401206736|gb|EJR13522.1| hypothetical protein II7_02615 [Bacillus cereus MSX-A12]
gi|401242139|gb|EJR48517.1| hypothetical protein IIK_03164 [Bacillus cereus VD102]
gi|401647935|gb|EJS65538.1| hypothetical protein ICW_04189 [Bacillus cereus BAG2X1-2]
gi|401821603|gb|EJT20759.1| ribonuclease H [Bacillus anthracis str. UR-1]
gi|402435449|gb|EJV67483.1| hypothetical protein IEO_01037 [Bacillus cereus BAG6X1-1]
gi|403394230|gb|EJY91471.1| ribonuclease H [Bacillus anthracis str. BF1]
Length = 128
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV--QLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|29837770|gb|AAP05806.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
gi|50399970|gb|AAT76358.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 964
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
+ T+ FDGA N A AG +L + G + + + + ATNN AEY L+ G++
Sbjct: 376 TWTMAFDGAL--NSQGARAGFILTSLSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRA 430
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G K + V+GDS+L+ Q+ +K N L+ E ++L+++F ++ H+ R N
Sbjct: 431 AAALGAKRLIVKGDSELIANQVHKDYKCTNPELSKYLAEVRKLEKRFDGIEVRHVYRKDN 490
Query: 189 SEADAQA 195
E D A
Sbjct: 491 IEPDDLA 497
>gi|423610110|ref|ZP_17585971.1| hypothetical protein IIM_00825 [Bacillus cereus VD107]
gi|401249427|gb|EJR55733.1| hypothetical protein IIM_00825 [Bacillus cereus VD107]
Length = 128
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ V +L +G +N+ AEY AL+ LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGIQPPV--QLSLPLGTMSNHEAEYHALLAALKYCVKHNYSIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKNFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|147837850|emb|CAN67148.1| hypothetical protein VITISV_008839 [Vitis vinifera]
Length = 1747
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLKYA 129
FDGA+ N G G +L + G + R V +A TNN+ EY A ILGL+ A
Sbjct: 1551 FDGAT--NHSGYGIGVLLISPHGDHIPR---SVRLAFSDRHPTTNNIVEYEACILGLEMA 1605
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
L+ G + + V GDS LV QIQG WK + L + L +F + H+ R N
Sbjct: 1606 LELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQ 1665
Query: 190 EADAQANMG 198
ADA A +
Sbjct: 1666 FADALATLA 1674
>gi|356570351|ref|XP_003553353.1| PREDICTED: uncharacterized protein LOC100790215 [Glycine max]
Length = 2317
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + TNN+AEY A ILG++ A+
Sbjct: 1745 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNMAEYEACILGIEKAIDL 1800
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1801 RIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKRLLTFFNKVELHHIPRDENQMAD 1860
Query: 193 AQANM 197
A A +
Sbjct: 1861 ALATL 1865
>gi|147791936|emb|CAN72441.1| hypothetical protein VITISV_032854 [Vitis vinifera]
Length = 2089
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1590 FDGAA--NQLGFGIGVLLISPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1647
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1648 GIRQMEVFGDSNLVLRQIQGDWKTRDVKLRSYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1707
Query: 193 AQANMG 198
A A +
Sbjct: 1708 ALATLA 1713
>gi|448431773|ref|ZP_21585284.1| ribonuclease H [Halorubrum tebenquichense DSM 14210]
gi|445687549|gb|ELZ39832.1| ribonuclease H [Halorubrum tebenquichense DSM 14210]
Length = 214
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI-ATNNVAEYRALILGLKYALQ 131
L DG+S+GNPG AGAGAVLRA DG V RL VG + NN AEY AL LGL+ AL
Sbjct: 81 VVLYVDGSSRGNPGPAGAGAVLRAADGPTV-RLGRPVGARSENNTAEYAALHLGLE-ALA 138
Query: 132 KGYKH--IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSF---QINHILRN 186
++ + V+ DS+ V + G + + A ++E+ + + H+ +
Sbjct: 139 ARWEPAAVEVRIDSRTVIDDVWG----DAEEFAAAAPYRPGIRERLAALPACEWTHLADS 194
Query: 187 LNSEADAQANMG 198
+ ADA+A +G
Sbjct: 195 DPNPADARAAVG 206
>gi|32488515|emb|CAE03267.1| OSJNBa0011J08.22 [Oryza sativa Japonica Group]
gi|38345859|emb|CAD41156.2| OSJNBa0064M23.1 [Oryza sativa Japonica Group]
Length = 586
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQ 131
+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 1 MAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 55
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ R N E
Sbjct: 56 LGVRRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 115
Query: 192 DAQA 195
D A
Sbjct: 116 DDLA 119
>gi|87162496|gb|ABD28291.1| Integrase, catalytic region; Ribonuclease H [Medicago truncatula]
Length = 981
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVV---YRLREGVGIATNNVAEYRALILGLKYALQ 131
L FDGA N +G GAVL G+ + RLR TNN+AEY A I+G++ A+
Sbjct: 409 LIFDGAV--NVYGSGIGAVLITPKGTHIPFTARLRFD---CTNNIAEYEACIMGIEEAID 463
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
K I + GDS LV QI+G W+ + L A+ L F +++H+ R+ N A
Sbjct: 464 LRIKKIVIYGDSALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMA 523
Query: 192 DAQANM 197
DA A +
Sbjct: 524 DALATL 529
>gi|222622736|gb|EEE56868.1| hypothetical protein OsJ_06501 [Oryza sativa Japonica Group]
Length = 124
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQ 131
+ FDGA N AGAG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 1 MAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAAT 55
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ R N E
Sbjct: 56 LGVRRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 115
Query: 192 D 192
D
Sbjct: 116 D 116
>gi|229016980|ref|ZP_04173900.1| hypothetical protein bcere0030_15450 [Bacillus cereus AH1273]
gi|229023161|ref|ZP_04179672.1| hypothetical protein bcere0029_15030 [Bacillus cereus AH1272]
gi|423392005|ref|ZP_17369231.1| hypothetical protein ICG_03853 [Bacillus cereus BAG1X1-3]
gi|228738086|gb|EEL88571.1| hypothetical protein bcere0029_15030 [Bacillus cereus AH1272]
gi|228744251|gb|EEL94333.1| hypothetical protein bcere0030_15450 [Bacillus cereus AH1273]
gi|401637838|gb|EJS55591.1| hypothetical protein ICG_03853 [Bacillus cereus BAG1X1-3]
Length = 128
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ +V L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV--HLSLPLGTMSNHEAEYHALLAALKYCTEHDYNIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|16905189|gb|AAL31059.1|AC090120_5 putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31432773|gb|AAP54366.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 684
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
+ T+ FDGA N AGAG +L + + + + + ATNN EY L+ G++
Sbjct: 366 TWTMAFDGAL--NSQGAGAGFILTSPSRD---QFKHAIHLNFRATNNTVEYEGLLAGIRA 420
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G K + V+GDS+LV Q+ +K +N L+ + ++L+++F ++ H+ R N
Sbjct: 421 AATLGAKRLIVKGDSELVANQVHKDYKCSNSELSKYLADVRKLEKRFDRIEVRHVYRKDN 480
Query: 189 SEADAQA 195
E D A
Sbjct: 481 VEPDDLA 487
>gi|384047937|ref|YP_005495954.1| RNase H [Bacillus megaterium WSH-002]
gi|345445628|gb|AEN90645.1| RNase H [Bacillus megaterium WSH-002]
Length = 133
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 3/127 (2%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
DGA+ GNPG +GAG +++ +R +G TN+ AEY AL+ LK L+K Y
Sbjct: 7 IDGATAGNPGPSGAGILIKGNGEH--HRYAVALGTMTNHEAEYHALLHALKICLEKKYTS 64
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ + DS+LV + + + N+ A L +EA +L +F F I I + N+ AD A
Sbjct: 65 VSFRTDSQLVDRAMNQEY-VKNKAFAPLLEEALKLSSQFDLFFIKWIPSSQNAGADQLAR 123
Query: 197 MGIYLKD 203
I K+
Sbjct: 124 QAINQKE 130
>gi|77555161|gb|ABA97957.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1984
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 119 YRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSF 178
Y AL+ GL+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF+
Sbjct: 1454 YEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGL 1513
Query: 179 QINHILRNLNSEADAQANMG 198
+++H+LR+ N AD AN G
Sbjct: 1514 ELSHVLRHNNEAADRLANFG 1533
>gi|356506842|ref|XP_003522184.1| PREDICTED: uncharacterized protein LOC100786848 [Glycine max]
Length = 2243
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + TNN+AEY A ILG++ A+
Sbjct: 1671 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNMAEYEACILGIEKAIDL 1726
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1727 RIKNLDIYGDSALVIYQIKGEWETRHPGLIPYKDYARHLLTFFNKVELHHIPRDENQMAD 1786
Query: 193 AQANM 197
A A +
Sbjct: 1787 ALATL 1791
>gi|224119068|ref|XP_002331317.1| predicted protein [Populus trichocarpa]
gi|222873900|gb|EEF11031.1| predicted protein [Populus trichocarpa]
Length = 326
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDG---SVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+ FDGA N GAGAV+ + D V +L+ G TNN AEY A ILGL+ AL+
Sbjct: 142 MYFDGAV--NICGNGAGAVIISPDKKQYPVSVKLQLG---CTNNTAEYEACILGLEAALE 196
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+ I V GDS L+ Q++G W+ + L + +L +F+ + H+ R N A
Sbjct: 197 LNIRKIDVYGDSMLIICQVKGEWQTKEEKLRPYQEYLSKLAGEFEEIEFTHLGREGNQFA 256
Query: 192 DAQANMG 198
DA A +
Sbjct: 257 DALATLA 263
>gi|348665811|gb|EGZ05640.1| hypothetical protein PHYSODRAFT_533596 [Phytophthora sojae]
Length = 367
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 172
TNN AEY AL+LG + A G +RV+GDS LV Q++G++ N L L + K
Sbjct: 7 TNNTAEYSALLLGSRAAADHGATSLRVEGDSTLVIQQVRGIFAARNAVLRRLRDQVKVEL 66
Query: 173 EKFQSFQINHILRNLNSEADAQANMGIYLK 202
+ SF ++H R N+ AD AN + L+
Sbjct: 67 ARVGSFSLHHNDRQANAHADRLANQALDLR 96
>gi|448538741|ref|ZP_21622987.1| ribonuclease H [Halorubrum hochstenium ATCC 700873]
gi|445700607|gb|ELZ52599.1| ribonuclease H [Halorubrum hochstenium ATCC 700873]
Length = 214
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 12/132 (9%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI-ATNNVAEYRALILGLKYALQ 131
L DG+S+GNPG AGAGAVLRA +G V RL VG + NN AEY AL LGL+ AL
Sbjct: 81 VVLYVDGSSRGNPGPAGAGAVLRAANGPTV-RLGRPVGARSENNTAEYAALHLGLE-ALA 138
Query: 132 KGYKH--IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSF---QINHILRN 186
++ + V+ DS+ V + G + + LA ++E+ + + H+ +
Sbjct: 139 ARWEPAAVEVRIDSRTVIDDVWG----DAEGLAAAAPYRPAIRERLAALPACEWTHLADS 194
Query: 187 LNSEADAQANMG 198
+ ADA+A +G
Sbjct: 195 DPNPADARAAVG 206
>gi|359497075|ref|XP_003635417.1| PREDICTED: protein NYNRIN-like, partial [Vitis vinifera]
Length = 1279
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 704 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 761
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS LV MQIQG WK + L + L +F + H+ R N AD
Sbjct: 762 DIRQMEVFGDSNLVLMQIQGDWKTRDVKLRPYHAYLELLVARFDDLRYVHLPRAHNRFAD 821
Query: 193 AQANMG 198
A A +
Sbjct: 822 ALATLA 827
>gi|407003987|gb|EKE20472.1| ribonuclease H [uncultured bacterium]
Length = 143
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK--YALQKGYK 135
DG S+GNPG AG G ++ D + E +GI TNN AEY ALI GLK AL K
Sbjct: 10 DGGSRGNPGPAGIGVWIKTLDK----KYGECIGIKTNNDAEYEALIFGLKKVKALLGKTK 65
Query: 136 ----HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
I DS+L+ Q+ +K+ + + E L F+ + NH++R N A
Sbjct: 66 AKQFEIECYADSELMVKQLNHEYKLKEERIQKYFIEIWNLMLDFKEVKFNHVMREKNKVA 125
Query: 192 DAQANMGI 199
D N +
Sbjct: 126 DEMVNAAL 133
>gi|51038039|gb|AAT93843.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1723
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Query: 30 TQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSC-TLEFDGA-SKGNPGQ 87
TQ V E ++A S + N + L + PY+ + +E + S N
Sbjct: 1089 TQEVEEAFIALKLYLSNPLVLVAPQPNEELFLYIVATPYSMSTVIVVEREKVQSALNSQG 1148
Query: 88 AGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVC 147
AGAG +L + G R ATNN AEY L+ G++ + G K + V+GDS+LV
Sbjct: 1149 AGAGFILTSPSGDQFKRAIHLNFRATNNTAEYEGLLAGIRATVALGVKRLIVKGDSELVA 1208
Query: 148 MQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 195
Q+ +K ++ L+ E ++L+++F ++ H+ R + E D A
Sbjct: 1209 NQVHKDYKCSSPKLSNYLAEVRKLEKRFDGIEVRHVYRKDDIEPDDLA 1256
>gi|147836100|emb|CAN62090.1| hypothetical protein VITISV_013805 [Vitis vinifera]
Length = 2463
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1416 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLXPYHAYLELL 1475
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F + H+ R N ADA A +
Sbjct: 1476 VXRFXDLRYTHLPRAQNQFADALATLA 1502
>gi|228920407|ref|ZP_04083752.1| hypothetical protein bthur0011_14210 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|423579890|ref|ZP_17556001.1| hypothetical protein IIA_01405 [Bacillus cereus VD014]
gi|423637652|ref|ZP_17613305.1| hypothetical protein IK7_04061 [Bacillus cereus VD156]
gi|228839037|gb|EEM84333.1| hypothetical protein bthur0011_14210 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|401217345|gb|EJR24039.1| hypothetical protein IIA_01405 [Bacillus cereus VD014]
gi|401273595|gb|EJR79580.1| hypothetical protein IK7_04061 [Bacillus cereus VD156]
Length = 128
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV--QLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKNFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|147773530|emb|CAN63008.1| hypothetical protein VITISV_003744 [Vitis vinifera]
Length = 1878
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 45/82 (54%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGLK AL+ G + V GDS LV QIQG WK + L + L
Sbjct: 1340 ATNNIVEYEACILGLKTALELGIGQMEVFGDSNLVFRQIQGEWKTRDAKLRPYHAYLELL 1399
Query: 172 KEKFQSFQINHILRNLNSEADA 193
KF+ + H+ R N ADA
Sbjct: 1400 VAKFKDLRYTHLPRAQNQFADA 1421
>gi|133751141|gb|ABO37966.1| putative pol protein [Vitis vinifera]
Length = 169
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ G + ++V GDS +V QIQG WK + L + L
Sbjct: 18 ATNNIIEYEACILGLETALELGIRQMKVFGDSNMVLRQIQGEWKTRDVKLRPYHAYLELL 77
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F + H+ R N ADA A +
Sbjct: 78 VGRFDDLRYTHLPRAQNQFADALATLA 104
>gi|147791735|emb|CAN68353.1| hypothetical protein VITISV_022217 [Vitis vinifera]
Length = 2168
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1593 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1650
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG W+ + L + L +F + H+ R N AD
Sbjct: 1651 GIRQMEVFGDSNLVLRQIQGEWRTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1710
Query: 193 AQANM 197
A A +
Sbjct: 1711 ALATL 1715
>gi|77555756|gb|ABA98552.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 262
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
+ FDG N AGAG +L + G ATNN EY L+ G++ A G
Sbjct: 1 MAFDGTL--NSQGAGAGFILTSPSGDQFNHAIHLNFRATNNTVEYEGLLAGIRAAAALGA 58
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K + V+GDS+LV Q+ +K +N LA E ++++ +F ++ H+ R N E D
Sbjct: 59 KRLIVKGDSELVANQVHKDYKCSNPELAKYLAEVRKMEHRFDGIEVRHVYRKDNVEPD 116
>gi|356560472|ref|XP_003548516.1| PREDICTED: uncharacterized protein LOC100811554 [Glycine max]
Length = 1998
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + TNN+AEY A ILG++ A+
Sbjct: 1764 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNMAEYEACILGIEKAIDL 1819
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1820 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQMAD 1879
Query: 193 AQANM 197
A A +
Sbjct: 1880 ALATL 1884
>gi|147865890|emb|CAN78842.1| hypothetical protein VITISV_015163 [Vitis vinifera]
Length = 2177
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1617 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1674
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1675 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLXPYHAYLELLVXRFXDLRYTHLPRAQNQFAD 1734
Query: 193 A 193
A
Sbjct: 1735 A 1735
>gi|163939500|ref|YP_001644384.1| ribonuclease H [Bacillus weihenstephanensis KBAB4]
gi|229011009|ref|ZP_04168203.1| hypothetical protein bmyco0001_14610 [Bacillus mycoides DSM 2048]
gi|229058324|ref|ZP_04196709.1| hypothetical protein bcere0026_14370 [Bacillus cereus AH603]
gi|229166532|ref|ZP_04294285.1| hypothetical protein bcere0007_15040 [Bacillus cereus AH621]
gi|423366574|ref|ZP_17344007.1| hypothetical protein IC3_01676 [Bacillus cereus VD142]
gi|423486803|ref|ZP_17463485.1| hypothetical protein IEU_01426 [Bacillus cereus BtB2-4]
gi|423492527|ref|ZP_17469171.1| hypothetical protein IEW_01425 [Bacillus cereus CER057]
gi|423500682|ref|ZP_17477299.1| hypothetical protein IEY_03909 [Bacillus cereus CER074]
gi|423516355|ref|ZP_17492836.1| hypothetical protein IG7_01425 [Bacillus cereus HuA2-4]
gi|423594385|ref|ZP_17570416.1| hypothetical protein IIG_03253 [Bacillus cereus VD048]
gi|423600973|ref|ZP_17576973.1| hypothetical protein III_03775 [Bacillus cereus VD078]
gi|423663423|ref|ZP_17638592.1| hypothetical protein IKM_03820 [Bacillus cereus VDM022]
gi|423667379|ref|ZP_17642408.1| hypothetical protein IKO_01076 [Bacillus cereus VDM034]
gi|423676588|ref|ZP_17651527.1| hypothetical protein IKS_04131 [Bacillus cereus VDM062]
gi|163861697|gb|ABY42756.1| ribonuclease H [Bacillus weihenstephanensis KBAB4]
gi|228616936|gb|EEK74008.1| hypothetical protein bcere0007_15040 [Bacillus cereus AH621]
gi|228719998|gb|EEL71587.1| hypothetical protein bcere0026_14370 [Bacillus cereus AH603]
gi|228750181|gb|EEM00013.1| hypothetical protein bmyco0001_14610 [Bacillus mycoides DSM 2048]
gi|401087731|gb|EJP95933.1| hypothetical protein IC3_01676 [Bacillus cereus VD142]
gi|401154968|gb|EJQ62382.1| hypothetical protein IEY_03909 [Bacillus cereus CER074]
gi|401156011|gb|EJQ63418.1| hypothetical protein IEW_01425 [Bacillus cereus CER057]
gi|401165261|gb|EJQ72580.1| hypothetical protein IG7_01425 [Bacillus cereus HuA2-4]
gi|401224182|gb|EJR30740.1| hypothetical protein IIG_03253 [Bacillus cereus VD048]
gi|401231519|gb|EJR38022.1| hypothetical protein III_03775 [Bacillus cereus VD078]
gi|401295323|gb|EJS00947.1| hypothetical protein IKM_03820 [Bacillus cereus VDM022]
gi|401304130|gb|EJS09688.1| hypothetical protein IKO_01076 [Bacillus cereus VDM034]
gi|401307709|gb|EJS13134.1| hypothetical protein IKS_04131 [Bacillus cereus VDM062]
gi|402438680|gb|EJV70689.1| hypothetical protein IEU_01426 [Bacillus cereus BtB2-4]
Length = 128
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV--QLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKIFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|229096181|ref|ZP_04227154.1| hypothetical protein bcere0020_14290 [Bacillus cereus Rock3-29]
gi|229102292|ref|ZP_04233001.1| hypothetical protein bcere0019_14530 [Bacillus cereus Rock3-28]
gi|229115136|ref|ZP_04244546.1| hypothetical protein bcere0017_14310 [Bacillus cereus Rock1-3]
gi|407704078|ref|YP_006827663.1| glyoxalase/bleomycin resistance protein/dioxygenase [Bacillus
thuringiensis MC28]
gi|423380506|ref|ZP_17357790.1| hypothetical protein IC9_03859 [Bacillus cereus BAG1O-2]
gi|423443538|ref|ZP_17420444.1| hypothetical protein IEA_03868 [Bacillus cereus BAG4X2-1]
gi|423446210|ref|ZP_17423089.1| hypothetical protein IEC_00818 [Bacillus cereus BAG5O-1]
gi|423466629|ref|ZP_17443397.1| hypothetical protein IEK_03816 [Bacillus cereus BAG6O-1]
gi|423536026|ref|ZP_17512444.1| hypothetical protein IGI_03858 [Bacillus cereus HuB2-9]
gi|423538729|ref|ZP_17515120.1| hypothetical protein IGK_00821 [Bacillus cereus HuB4-10]
gi|423544966|ref|ZP_17521324.1| hypothetical protein IGO_01401 [Bacillus cereus HuB5-5]
gi|423625326|ref|ZP_17601104.1| hypothetical protein IK3_03924 [Bacillus cereus VD148]
gi|228668276|gb|EEL23708.1| hypothetical protein bcere0017_14310 [Bacillus cereus Rock1-3]
gi|228681193|gb|EEL35361.1| hypothetical protein bcere0019_14530 [Bacillus cereus Rock3-28]
gi|228687141|gb|EEL41046.1| hypothetical protein bcere0020_14290 [Bacillus cereus Rock3-29]
gi|401132290|gb|EJQ39932.1| hypothetical protein IEC_00818 [Bacillus cereus BAG5O-1]
gi|401177313|gb|EJQ84505.1| hypothetical protein IGK_00821 [Bacillus cereus HuB4-10]
gi|401183141|gb|EJQ90258.1| hypothetical protein IGO_01401 [Bacillus cereus HuB5-5]
gi|401255006|gb|EJR61231.1| hypothetical protein IK3_03924 [Bacillus cereus VD148]
gi|401631258|gb|EJS49055.1| hypothetical protein IC9_03859 [Bacillus cereus BAG1O-2]
gi|402412624|gb|EJV44977.1| hypothetical protein IEA_03868 [Bacillus cereus BAG4X2-1]
gi|402415339|gb|EJV47663.1| hypothetical protein IEK_03816 [Bacillus cereus BAG6O-1]
gi|402461451|gb|EJV93164.1| hypothetical protein IGI_03858 [Bacillus cereus HuB2-9]
gi|407381763|gb|AFU12264.1| ribonuclease H [Bacillus thuringiensis MC28]
Length = 128
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGIQPPV--QLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|89179457|gb|ABD63192.1| Reverse transcriptase family protein [Asparagus officinalis]
Length = 1146
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 53/80 (66%)
Query: 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 172
+NNVAEY AL++GL +A + G +++ GDS+L+ Q++G +++ NQ+L +EA ++
Sbjct: 1009 SNNVAEYNALLIGLSFAKELGVEYLEAFGDSQLIVNQVRGEYEVRNQDLIPYHQEAIKMA 1068
Query: 173 EKFQSFQINHILRNLNSEAD 192
+ F+ F I +I R N+ D
Sbjct: 1069 DSFEEFFIEYIPRLQNTYTD 1088
>gi|147775045|emb|CAN59913.1| hypothetical protein VITISV_030726 [Vitis vinifera]
Length = 1957
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1453 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLXQIQGEWKTRDVKLKPYHAYLELL 1512
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F + H+ R N ADA A +
Sbjct: 1513 VGRFDDLRYTHLPRAQNQFADALATLA 1539
>gi|242084264|ref|XP_002442557.1| hypothetical protein SORBIDRAFT_08g021885 [Sorghum bicolor]
gi|241943250|gb|EES16395.1| hypothetical protein SORBIDRAFT_08g021885 [Sorghum bicolor]
Length = 528
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
A+NNVAEY A + G++ A++ G K + V GDS LV Q+ W N++ + CKE ++
Sbjct: 195 ASNNVAEYEACLHGIRLAVELGVKRLYVYGDSALVINQLNKEWDANHEKMDLYCKEIRKW 254
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+ F + H++R+ N DA + +G
Sbjct: 255 ETNFYGIEYIHVVRDKNQAGDALSKLG 281
>gi|229160640|ref|ZP_04288634.1| hypothetical protein bcere0009_14310 [Bacillus cereus R309803]
gi|228622839|gb|EEK79671.1| hypothetical protein bcere0009_14310 [Bacillus cereus R309803]
Length = 128
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA+KGNPG +GAG ++ V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGATKGNPGPSGAGVFIKGVQPPV--QLSLPLGTMSNHEAEYHALLAALKYCTEHNYSIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV I+ + N+ A L EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAIEKEYA-KNKMFAPLLDEALQYIKSFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|50838954|gb|AAT81715.1| putative retrotransposon protein [Oryza sativa Japonica Group]
gi|108710483|gb|ABF98278.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 564
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 8/127 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
+ + FDGA N AGAG +L + G + + + + ATNN A+Y L+ G++
Sbjct: 83 TWIMAFDGAL--NSQGAGAGFILTSPSGD---QFKHAIHLNFRATNNTAKYEGLLAGIRA 137
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N
Sbjct: 138 AAALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDN 197
Query: 189 SEADAQA 195
E + A
Sbjct: 198 IEPNDLA 204
>gi|356565827|ref|XP_003551138.1| PREDICTED: uncharacterized protein LOC100815866 [Glycine max]
Length = 1303
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVV-YRLREGVGIATNNVAEYRALILGLKYALQKGYK 135
FDGAS N G GAVL + D + + R G TNN+AEY A LG++ A+ K
Sbjct: 1064 FDGAS--NALGHGVGAVLVSPDDQCIPFTARLGFD-CTNNMAEYEACALGVQAAIDFDVK 1120
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 195
++V GDS LV Q++G W+ + L L + F +HI R N ADA A
Sbjct: 1121 LLKVYGDSALVIRQLKGEWETRDSKLIPYQTHILRLAKYFDDISFHHIPREENQMADALA 1180
Query: 196 NMG 198
+
Sbjct: 1181 TLA 1183
>gi|147863318|emb|CAN78356.1| hypothetical protein VITISV_007317 [Vitis vinifera]
Length = 879
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILG 125
C L FDGA+ N + G G +L + G + + V +A TNN+ EY A I G
Sbjct: 557 CRLYFDGAA--NQSRFGIGILLISPQGD---HIPKSVRLAFSDHHRLTNNIVEYEACITG 611
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ L G + + + GDS LV Q QG+W+ ++ L L + F + H+ R
Sbjct: 612 LETTLDLGIRQLEIHGDSNLVIQQTQGIWRTRDEKLKPYHAYLDLLSDGFDVLRYIHLPR 671
Query: 186 NLNSEADAQANMG 198
N ADA A +
Sbjct: 672 AENQFADALATLA 684
>gi|356502987|ref|XP_003520295.1| PREDICTED: uncharacterized protein LOC100793173 [Glycine max]
Length = 1150
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVV-YRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FD AS N G GAVL + D V + R G TNN+AEY A L ++ A+
Sbjct: 1021 TVWFDVAS--NILGHGVGAVLISPDNQCVPFTARLGFD-CTNNMAEYEACALAVQAAIDS 1077
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N AD
Sbjct: 1078 NVKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMAD 1137
Query: 193 AQANMG 198
A A +
Sbjct: 1138 ALATLA 1143
>gi|423509508|ref|ZP_17486039.1| hypothetical protein IG3_01005 [Bacillus cereus HuA2-1]
gi|402456799|gb|EJV88572.1| hypothetical protein IG3_01005 [Bacillus cereus HuA2-1]
Length = 128
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV--QLSLPLGTMSNHEAEYHALLAALKYCTKHNYNIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKIFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|359490420|ref|XP_003634084.1| PREDICTED: uncharacterized protein LOC100853663 [Vitis vinifera]
Length = 2086
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1542 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELL 1601
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F + H+ R N ADA A +
Sbjct: 1602 VGRFDDLRYTHLPRAQNQFADALATLA 1628
>gi|147815071|emb|CAN74570.1| hypothetical protein VITISV_034081 [Vitis vinifera]
Length = 1998
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1474 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELL 1533
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F + H+ R N ADA A +
Sbjct: 1534 VGRFDDLRYTHLPRAQNQFADALATLA 1560
>gi|147779083|emb|CAN71393.1| hypothetical protein VITISV_005159 [Vitis vinifera]
Length = 2155
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1650 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELL 1709
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F + H+ R N ADA A +
Sbjct: 1710 VGRFDDLRYTHLPRAQNQFADALATLA 1736
>gi|147860177|emb|CAN82919.1| hypothetical protein VITISV_008801 [Vitis vinifera]
Length = 2318
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1743 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1800
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1801 GIGQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1860
Query: 193 AQANMG 198
A A +
Sbjct: 1861 ALATLA 1866
>gi|147834845|emb|CAN68307.1| hypothetical protein VITISV_034582 [Vitis vinifera]
Length = 1881
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 47/86 (54%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1343 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELL 1402
Query: 172 KEKFQSFQINHILRNLNSEADAQANM 197
+F + H+ R N ADA A +
Sbjct: 1403 VGRFDDLRYTHLPRAQNQFADALATL 1428
>gi|356551859|ref|XP_003544290.1| PREDICTED: uncharacterized protein LOC100815788 [Glycine max]
Length = 2270
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + TNN+AEY A ILG++ A+
Sbjct: 1698 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNMAEYEACILGIEKAIDL 1753
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1754 RIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQMAD 1813
Query: 193 AQANM 197
A A +
Sbjct: 1814 ALATL 1818
>gi|147838310|emb|CAN76756.1| hypothetical protein VITISV_012606 [Vitis vinifera]
Length = 1195
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDG-------SVVYRLREGVGIATNNVAEYRALILGLKYA 129
FDGA+ N G G +L + G S+V+ R TNN+ EY A ILGL+ A
Sbjct: 620 FDGAA--NQLGFGIGVLLISPQGDHIPRSVSLVFSDRHPT---TNNIVEYEACILGLETA 674
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
L+ G + + V GDS LV QIQG WK + L + L +F + H+ R N
Sbjct: 675 LELGIRQMEVFGDSNLVLRQIQGDWKTKDVKLRPYHAYLELLVGRFDDLRYTHLPRAQNQ 734
Query: 190 EADAQANMG 198
ADA A +
Sbjct: 735 FADALATLA 743
>gi|108705673|gb|ABF93468.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1800
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG +L + +G V+ L ATNN+AEY L+ G
Sbjct: 1203 LPHTAY-WVMQFDGSLSLQ--GAGAGVMLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAG 1259
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1260 LRVAAGLGIRRLLVLGDSQLVVNQVSKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1319
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1320 RDNAVAD 1326
>gi|348678921|gb|EGZ18738.1| hypothetical protein PHYSODRAFT_381063 [Phytophthora sojae]
Length = 129
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 172
TNN AEY ALI GL AL G + + V+GDS L+ Q++G + NN L L +A+ L
Sbjct: 42 TNNTAEYIALISGLTGALHHGVRRLTVKGDSTLILEQVRGRYACNNARLRQLRNQARRLL 101
Query: 173 EKFQSFQINHILRNLNSEADAQANMGI 199
+ +++ H+ R N +AD AN +
Sbjct: 102 RRLDYYELVHVDRLENRDADRLANRAL 128
>gi|356570299|ref|XP_003553327.1| PREDICTED: uncharacterized protein LOC100814838 [Glycine max]
Length = 2284
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
L FDGA GN G GAV+ +G+ + TNN+AEY A ILG++ A+
Sbjct: 1712 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNMAEYEACILGIEKAIDL 1767
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1768 RIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQMAD 1827
Query: 193 AQANM 197
A A +
Sbjct: 1828 ALATL 1832
>gi|196038938|ref|ZP_03106245.1| ribonuclease H [Bacillus cereus NVH0597-99]
gi|196030083|gb|EDX68683.1| ribonuclease H [Bacillus cereus NVH0597-99]
Length = 128
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG + +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFITGVQPAV--QLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|8778482|gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
Length = 253
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 3/131 (2%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L DGAS+GNP A AG V+R DG+ Y +GI + +AE GL A ++G
Sbjct: 95 LNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGV 154
Query: 135 KHIRVQGDSKLVCMQIQ-GLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ ++ DS++V ++ G+ ++ L+ L + L K S +I+H+ R N AD
Sbjct: 155 TQLEMEIDSEMVVGFLRTGI--DDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADG 212
Query: 194 QANMGIYLKDG 204
AN +L G
Sbjct: 213 LANYAFFLPLG 223
>gi|147820124|emb|CAN60550.1| hypothetical protein VITISV_040254 [Vitis vinifera]
Length = 1494
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/131 (36%), Positives = 64/131 (48%), Gaps = 12/131 (9%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLK 127
L FDGA+ N G G +L + G + R V +A TNN+ EY A ILGL+
Sbjct: 940 LYFDGAA--NQLGYGIGVLLVSSQGDHIPR---SVRLAFHDRHPITNNIVEYEACILGLE 994
Query: 128 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
AL+ G + + V GDS LV QIQG WK + L + L +F + H+ R
Sbjct: 995 TALELGIRQMEVFGDSNLVLRQIQGDWKTKDVKLRPYHAYLELLVARFDDLRYVHLPRAQ 1054
Query: 188 NSEADAQANMG 198
N ADA A +
Sbjct: 1055 NRFADALATLA 1065
>gi|9665118|gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
gi|55978717|gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thaliana]
Length = 272
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 3/131 (2%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L DGAS+GNP A AG V+R DG+ Y +GI + +AE GL A ++G
Sbjct: 114 LNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGV 173
Query: 135 KHIRVQGDSKLVCMQIQ-GLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ ++ DS++V ++ G+ ++ L+ L + L K S +I+H+ R N AD
Sbjct: 174 TQLEMEIDSEMVVGFLRTGI--DDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADG 231
Query: 194 QANMGIYLKDG 204
AN +L G
Sbjct: 232 LANYAFFLPLG 242
>gi|423555543|ref|ZP_17531846.1| hypothetical protein II3_00748 [Bacillus cereus MC67]
gi|401196947|gb|EJR03885.1| hypothetical protein II3_00748 [Bacillus cereus MC67]
Length = 128
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ V +L +G +N+ AEY AL+ LKY Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV--QLSLPLGTMSNHEAEYHALLAALKYCATHNYSIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKNFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|147864313|emb|CAN80945.1| hypothetical protein VITISV_026851 [Vitis vinifera]
Length = 1112
Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGS-------VVYRLREGVGIATNNVAEYRALILGLK 127
L FDGA+ N G G +L + G +V+R R + TNN+ EY A IL L+
Sbjct: 537 LYFDGAA--NQLGYGIGVLLVSPQGDHIPRSVRLVFRDRHPI---TNNIVEYEACILDLE 591
Query: 128 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
AL+ G + + V GDS LV QIQG WK + L + L +F + + H+ R
Sbjct: 592 TALELGIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVARFDNLRYVHLPRAQ 651
Query: 188 NSEADAQANMG 198
N ADA A +
Sbjct: 652 NQFADALATLA 662
>gi|224123090|ref|XP_002330336.1| predicted protein [Populus trichocarpa]
gi|222871540|gb|EEF08671.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+ TL FDG N GAGAV+ + + + TNN AEY A I+GL+ AL+
Sbjct: 141 TWTLYFDGVV--NVSGNGAGAVVISPENKQYPVSARLLFECTNNTAEYEACIIGLEVALE 198
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
K + V GDS L+ Q++G W+ N+ L L +F+ + HI R+ N A
Sbjct: 199 LKAKKLEVFGDSLLIIYQVKGEWQTKNEKLKLYQNYLLRLANEFEEIKFTHISRDKNQFA 258
Query: 192 DAQANMG 198
DA +
Sbjct: 259 DALTTLA 265
>gi|147783047|emb|CAN73070.1| hypothetical protein VITISV_016195 [Vitis vinifera]
Length = 1720
Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 47/87 (54%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
+TNN+ EY A ILGL+ AL+ G K ++V GDS LV QIQG WK + L + L
Sbjct: 1375 STNNIVEYEACILGLETALELGIKQMKVFGDSNLVLRQIQGKWKTKDVKLKPYHAYLELL 1434
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F + H+ R N DA A +
Sbjct: 1435 VRRFDDLRYTHLPRVQNQFVDALATLA 1461
>gi|116309521|emb|CAH66586.1| OSIGBa0111E13.4 [Oryza sativa Indica Group]
Length = 523
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+AEY L+ G++ A G K + V+GDS+LV Q+ +K +N L+ E ++L
Sbjct: 384 ATNNIAEYEGLLAGIRAAATLGVKRLIVKGDSELVTNQVHKDYKCSNPELSKYLAEVRKL 443
Query: 172 KEKFQSFQINHILRNLNSEADAQAN 196
+++F ++ H+ R N E D A
Sbjct: 444 EKRFDRIEVRHVYRKDNIEPDDLAR 468
>gi|108708301|gb|ABF96096.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 522
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQ 131
+ FDGA N AGAG +L + + + + + + ATNN AEY L+ G++ A
Sbjct: 1 MAFDGAL--NSQGAGAGFILTSPS---IDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 55
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N +
Sbjct: 56 LGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLVEVRKLEKRFDGIEVRHVYRKDNIKP 115
Query: 192 D 192
D
Sbjct: 116 D 116
>gi|77556077|gb|ABA98873.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 864
Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ F+GA N A AG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 427 TMAFNGAL--NSQGARAGFILTSPSGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAA 481
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 482 TLEAKRLIVKGDSELVTNQVHKDYKCSNSELSKYLAEVRKLEKRFDGIEVRHVYRKDNVE 541
Query: 191 ADAQA 195
D A
Sbjct: 542 PDDLA 546
>gi|147818449|emb|CAN60892.1| hypothetical protein VITISV_040647 [Vitis vinifera]
Length = 1795
Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/131 (36%), Positives = 64/131 (48%), Gaps = 12/131 (9%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLK 127
L FDGA+ N G G +L + G + R V +A TNN+ EY A ILGL+
Sbjct: 1371 LYFDGAA--NQLGYGIGVLLVSPQGDHIPR---SVRLAFHDRHPITNNIVEYEACILGLE 1425
Query: 128 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
AL+ G + + V GDS LV QIQG WK + L + L +F + H+ R
Sbjct: 1426 TALELGIRQMXVFGDSNLVLRQIQGDWKTRDVKLXPYHAYLELLVARFDDLRYVHLPRAX 1485
Query: 188 NSEADAQANMG 198
N ADA A +
Sbjct: 1486 NRFADALATLA 1496
>gi|423481581|ref|ZP_17458271.1| hypothetical protein IEQ_01359 [Bacillus cereus BAG6X1-2]
gi|401144789|gb|EJQ52316.1| hypothetical protein IEQ_01359 [Bacillus cereus BAG6X1-2]
Length = 128
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA+KGNPG +GAG ++ V +L +G +N+ AEY AL+ LKY Y +
Sbjct: 7 DGATKGNPGPSGAGVFIKGVQPPV--QLSVPLGTMSNHEAEYHALLAALKYCAAHNYSSV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKNFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|38344129|emb|CAD39841.2| OSJNBb0072N21.8 [Oryza sativa Japonica Group]
Length = 1790
Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N AGAG +L + + + + + ATNN AEY L+ G++
Sbjct: 1377 TMAFDGAL--NSQGAGAGFILTSPSRD---QFKHAIHLNFRATNNTAEYEGLLAGIRATA 1431
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ R N E
Sbjct: 1432 ALGVRRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIE 1491
Query: 191 ADAQA 195
D A
Sbjct: 1492 PDDLA 1496
>gi|77554693|gb|ABA97489.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1226
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 57 ADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNV 116
+ CL + +P+ Y FDG+S GQ G G VL + +G TNN
Sbjct: 626 GEVCL-VEVIPWRIY-----FDGSS-CKEGQ-GTGVVLFSPNGMCYEASVRLEYYCTNNE 677
Query: 117 AEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ 176
AEY AL+ GL+ G K++ GDS+LV Q+ G++K +++L ++ F
Sbjct: 678 AEYNALLFGLQVMEMVGAKYVEAFGDSELVVQQVAGIYKCLDESLNRYLDSCLDIIANFD 737
Query: 177 SFQINHILRNLNSEAD--AQANMGIYLKDG 204
+F I HI R NS A+ AQ G +K G
Sbjct: 738 NFVIRHIARRDNSRANDLAQQASGYNVKKG 767
>gi|224164518|ref|XP_002338691.1| predicted protein [Populus trichocarpa]
gi|222873212|gb|EEF10343.1| predicted protein [Populus trichocarpa]
Length = 361
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 74 TLEFDGASK--GNPGQAGAGAVLRAEDGSVVYRLREGVGI-ATNNVAEYRALILGLKYAL 130
T+ FDGA GN GAGAV+ + D Y + + TNN AEY A ILGL+ AL
Sbjct: 229 TMFFDGAVNVYGN----GAGAVIISPDKKQ-YPVSVKLHFECTNNTAEYEACILGLEAAL 283
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ K + V GDS L+ Q++G W+ + L + L ++F+ + H+ R N
Sbjct: 284 ELKIKKLDVYGDSMLIICQVKGEWQTKEEKLRPYQEYLSTLAKEFEEIRFTHLGREGNHF 343
Query: 191 ADAQANMG 198
ADA A +
Sbjct: 344 ADALATLA 351
>gi|38344641|emb|CAE05074.2| OSJNBa0094P09.13 [Oryza sativa Japonica Group]
Length = 2027
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 58 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVA 117
++ N +P+ + ++FDG+ AGAG L + G V+ L ATNN+A
Sbjct: 1422 EASTNPSQLPHTTH-WVMQFDGSLSLQ--GAGAGVTLTSPTGDVLRYLVRLDFRATNNMA 1478
Query: 118 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 177
EY L+ GL+ A G +H+ V GDS+LV Q+ ++ ++ + ++ + ++ F
Sbjct: 1479 EYEGLLAGLRVAAGLGIRHLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDG 1538
Query: 178 FQINHILRNLNSEAD 192
++ H+ R N AD
Sbjct: 1539 IELRHVPRRDNMIAD 1553
>gi|31415903|gb|AAP50924.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1799
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ F GA N AGAG +L + G + + + + ATN AEY L+ G++ A
Sbjct: 1259 TMAFVGAL--NSQGAGAGFILTSPLGD---QFKHAIYLNFRATNKTAEYEGLLAGIRVAA 1313
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDSKLV Q+ +K ++ L+ E ++L+++F ++ H+ R N E
Sbjct: 1314 ALGVKRLIVKGDSKLVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIE 1373
Query: 191 ADAQA 195
D A
Sbjct: 1374 PDNLA 1378
>gi|53749265|gb|AAU90124.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1796
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1199 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1255
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q++ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1256 LRVAAGLGIRRLLVLGDSQLVVNQVRKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1315
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1316 RDNAVAD 1322
>gi|359497555|ref|XP_003635565.1| PREDICTED: uncharacterized protein LOC100852562, partial [Vitis
vinifera]
Length = 413
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 188 FDGAA--NQSGYGIGVQLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 245
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 246 DIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVARFDDLRYVHLPRAQNRFAD 305
Query: 193 AQANMG 198
A A +
Sbjct: 306 ALATLA 311
>gi|423454855|ref|ZP_17431708.1| hypothetical protein IEE_03599 [Bacillus cereus BAG5X1-1]
gi|423472432|ref|ZP_17449175.1| hypothetical protein IEM_03737 [Bacillus cereus BAG6O-2]
gi|423524514|ref|ZP_17500987.1| hypothetical protein IGC_03897 [Bacillus cereus HuA4-10]
gi|401135824|gb|EJQ43421.1| hypothetical protein IEE_03599 [Bacillus cereus BAG5X1-1]
gi|401170357|gb|EJQ77598.1| hypothetical protein IGC_03897 [Bacillus cereus HuA4-10]
gi|402427964|gb|EJV60062.1| hypothetical protein IEM_03737 [Bacillus cereus BAG6O-2]
Length = 128
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ V +L +G +N+ AEY AL+ LKY Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV--QLSLPLGTMSNHEAEYHALLAALKYCAAHNYSIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKNFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|309811012|ref|ZP_07704810.1| ribonuclease HI [Dermacoccus sp. Ellin185]
gi|308434976|gb|EFP58810.1| ribonuclease HI [Dermacoccus sp. Ellin185]
Length = 414
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 75 LEFDGASKGNPGQAGAGAVLR-AEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
+E DG S+GNPG AG G+++R A+ G+++ +G +NNVAEY LI GL+ +
Sbjct: 7 VEADGGSRGNPGVAGYGSLVRDADTGALLAERAAPLGKESNNVAEYTGLIEGLRAVVDHA 66
Query: 134 Y-KHIRVQGDSKLVCMQIQGLWKINNQNL 161
+ V+ DSKLV Q+ G WKI ++++
Sbjct: 67 PGAAVTVRMDSKLVVEQMSGRWKIKHEDM 95
>gi|29788812|gb|AAP03358.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1778
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ F GA N AGAG +L + G + + + + ATN AEY L+ G++ A
Sbjct: 1238 TMAFVGAL--NSQGAGAGFILTSPLGD---QFKHAIYLNFRATNKTAEYEGLLAGIRVAA 1292
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G K + V+GDSKLV Q+ +K ++ L+ E ++L+++F ++ H+ R N E
Sbjct: 1293 ALGVKRLIVKGDSKLVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIE 1352
Query: 191 ADAQA 195
D A
Sbjct: 1353 PDNLA 1357
>gi|406977775|gb|EKD99865.1| Ribonuclease H [uncultured bacterium]
Length = 145
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY--K 135
DG S+ NPG + G V G V+ + + +G+ATNN AEY+A+I LKY +
Sbjct: 12 DGGSRNNPGPSAIG-VYATSTGQEVFTISQYLGVATNNEAEYQAVIYALKYLKENEIFSP 70
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKE------LKEKFQSFQINHILRNLNS 189
+I DS+L+ QI G++K+ +L L + + L ++ + ++LR N
Sbjct: 71 NITFVLDSELIVKQITGIYKVKQPHLQALKTQVLDLIGQLNLSKQILDLKFVNVLREKNK 130
Query: 190 EADAQANMGI 199
+AD N+ +
Sbjct: 131 DADRLVNLAL 140
>gi|147800365|emb|CAN62141.1| hypothetical protein VITISV_038647 [Vitis vinifera]
Length = 2068
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLKYA 129
FDGA+ N G G +L + G + R V +A TNN+ EY A ILGL+ A
Sbjct: 1526 FDGAA--NHSGYGIGVLLISPHGDQIPR---SVHLAFSDRHPATNNIVEYEACILGLETA 1580
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
L+ G + + GDS LV QIQG WK + L + L +F + H+ R N
Sbjct: 1581 LELGIRQMEAFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQ 1640
Query: 190 EADAQANMG 198
ADA A +
Sbjct: 1641 FADALATLA 1649
>gi|242096048|ref|XP_002438514.1| hypothetical protein SORBIDRAFT_10g021240 [Sorghum bicolor]
gi|241916737|gb|EER89881.1| hypothetical protein SORBIDRAFT_10g021240 [Sorghum bicolor]
Length = 441
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 61 LNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYR 120
LN P ++ FDG+ GAG + + + + + + A+NNVAEY
Sbjct: 31 LNEPPPPDTSDHWSMFFDGSL----NIKGAGILFVSPNKDKLRYILRILFPASNNVAEYE 86
Query: 121 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 180
A + ++ A++ G K + V GDS LV Q+ W ++ + CKE ++ + F +
Sbjct: 87 ACLHDIRLAVELGVKRLYVHGDSALVINQLNKEWDTTHEKMDLYCKEIQKWESNFYGIEY 146
Query: 181 NHILRNLNSEADA 193
H++R+ N ADA
Sbjct: 147 IHVVRDRNQAADA 159
>gi|77556933|gb|ABA99729.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1320
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
+ FDG+ N AGAG L + G V+ + ATNN+AEY L+ GL+ A G
Sbjct: 963 MHFDGSL--NLQGAGAGVTLTSPSGDVLKYVVRLDFRATNNMAEYEGLLAGLRAAAGMGI 1020
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS+LV Q+ ++ + + +E + ++ F ++ H+ R N+ AD
Sbjct: 1021 RRLLVLGDSQLVVNQVSKEYQCTDPQMDAYVREVRRMERHFDGLELRHVPRRDNTVAD 1078
>gi|147855720|emb|CAN81323.1| hypothetical protein VITISV_019409 [Vitis vinifera]
Length = 2174
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1610 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHSATNNIVEYEACILGLETALEL 1667
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQ WK + L + L +F + H+ R N AD
Sbjct: 1668 GIRQMEVFGDSNLVLRQIQSEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1727
Query: 193 AQANMG 198
A A +
Sbjct: 1728 ALATLA 1733
>gi|38344085|emb|CAE01745.2| OSJNBb0056F09.8 [Oryza sativa Japonica Group]
Length = 1751
Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + V+ L ATNN+AEY L+ G
Sbjct: 1329 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSSSCDVLRYLVRLDFRATNNMAEYEGLLAG 1385
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G +H+ V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1386 LRVAAGLGIRHLLVLGDSQLVVNQVSKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1445
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1446 RDNAVAD 1452
>gi|340354737|ref|ZP_08677438.1| ribonuclease HI [Sporosarcina newyorkensis 2681]
gi|339623136|gb|EGQ27642.1| ribonuclease HI [Sporosarcina newyorkensis 2681]
Length = 136
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
DGAS GNPG +G G ++ E V ++ E + N+ AE++AL+ GL+ A++
Sbjct: 9 IDGASAGNPGLSGIGVYIKGEGHDV--KISEPIEPTNNHTAEFQALLRGLEEAVKLTSGM 66
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
+ V+ DS +V ++ + I N+ A K+A +L E+F F I I + N AD A
Sbjct: 67 VSVRSDSNVVVQAMEKEF-IKNEEYAPYLKKAMKLTEQFDFFFIKWIPDHTNKTADVLAR 125
Query: 197 MGI 199
I
Sbjct: 126 QAI 128
>gi|224093782|ref|XP_002309989.1| predicted protein [Populus trichocarpa]
gi|222852892|gb|EEE90439.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L DG SKGNPG AGAG V+R G+ + +GI ++ AE A+ +GL+ A +G+
Sbjct: 86 LNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAWDRGF 145
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ + ++ DSK+V I G + + + K + + H+ R N AD
Sbjct: 146 RKVDLESDSKVVVGLINGD-SVRVDRNYNIIMQIKGMLGRDWEVTTYHVYREANCVADWL 204
Query: 195 ANMGI 199
AN G+
Sbjct: 205 ANYGL 209
>gi|41469319|gb|AAS07175.1| putative reverse transcriptase [Oryza sativa Japonica Group]
gi|108709517|gb|ABF97312.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2002
Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Query: 64 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALI 123
+ +P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+
Sbjct: 1403 EQLPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLL 1459
Query: 124 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 183
GL+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+
Sbjct: 1460 AGLRVAAGLGIRRLMVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHV 1519
Query: 184 LRNLNSEAD 192
R N+ AD
Sbjct: 1520 PRRDNAVAD 1528
>gi|77555466|gb|ABA98262.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 2013
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 58 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVA 117
++ N +P+ Y ++FDG+ AGAG L + +G V+ L ATNN+A
Sbjct: 1408 EASTNPSQLPHTTY-WVMQFDGSLSLQ--GAGAGVTLTSPNGDVLRYLVRLDFRATNNMA 1464
Query: 118 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 177
EY L+ GL+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F
Sbjct: 1465 EYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDG 1524
Query: 178 FQINHILRNLNSEAD 192
++ H+ R N AD
Sbjct: 1525 IELRHVPRRDNIVAD 1539
>gi|284434716|gb|ADB85414.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1429
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 74 TLEFDGAS--KGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
T+ FDG+ KG +GAG VL + G + + ATNNVA+Y L+ GL+ A
Sbjct: 1063 TMYFDGSLMLKG----SGAGVVLISPTGEHIKYAIQLNFPATNNVAKYEGLLAGLRAARS 1118
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G + + V+GDS+LV Q+ ++ ++ ++ + ++L++ F FQI HI R N
Sbjct: 1119 LGIRKLLVKGDSQLVTNQVGKEYQCSSTKMSSYLAKVRKLEKHFFGFQIQHIPRKENFLV 1178
Query: 192 DAQANM 197
D A M
Sbjct: 1179 DQLAQM 1184
>gi|167518678|ref|XP_001743679.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777641|gb|EDQ91257.1| predicted protein [Monosiga brevicollis MX1]
Length = 270
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 74 TLEFDGASKGNP----GQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYA 129
TL FDG ++ N G AGAGA+L+ + G+VV ++ + TNN AEY LI+GL+ A
Sbjct: 6 TLHFDGGARDNKRGSGGPAGAGALLKDQHGAVVIKVAKFHPGWTNNEAEYMGLIMGLRAA 65
Query: 130 -LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
L K ++V GDS+L+ Q+QG + + + L A+ + + + H LR+ N
Sbjct: 66 TLFKPPAGLQVVGDSQLIVRQMQGQYAVKSATLKPFFDHARSIALPCE-MNMTHTLRHNN 124
Query: 189 SEADAQANMGI 199
+EADA AN+ +
Sbjct: 125 AEADALANLAM 135
>gi|386758775|ref|YP_006231991.1| RNase H [Bacillus sp. JS]
gi|384932057|gb|AFI28735.1| RNase H [Bacillus sp. JS]
Length = 132
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS GNPG +G G ++ E + + + +G+ TN AE+ ALI G+K +GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHEGKAESFSIP--IGVHTNQEAEFLALIEGMKLCATRGYQSV 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 66 SFRTDSDIVERAAE-LEMVKNKTFQPFVEEITRLKAAFPLFFIKWIPGKQNQKADLLAKE 124
Query: 198 GIYLKD 203
I L +
Sbjct: 125 AIRLNE 130
>gi|108708701|gb|ABF96496.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1006
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKY 128
+ T+ F GA N AGAG +L + G + + + + ATN AEY L+ G++
Sbjct: 525 TWTMAFVGAL--NSQGAGAGFILTSPLGD---QFKHAIYLNFRATNKTAEYEGLLAGIRV 579
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G K + V+GDSKLV Q+ +K ++ L+ E ++L+++F ++ H+ R N
Sbjct: 580 AAALGVKRLIVKGDSKLVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDN 639
Query: 189 SEAD 192
E D
Sbjct: 640 IEPD 643
>gi|430758377|ref|YP_007209269.1| Ribonuclease H-like protein [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430022897|gb|AGA23503.1| Ribonuclease H-like protein [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 132
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS GNPG +G G ++ E + + + +G+ TN AE+ ALI G+K +GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHEGTAESFSIP--IGVHTNQEAEFLALIEGMKLCATRGYQSV 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 66 SFRTDSDIVERATE-LEMVKNKTFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKE 124
Query: 198 GIYLKD 203
I L +
Sbjct: 125 AIRLNE 130
>gi|147853452|emb|CAN82295.1| hypothetical protein VITISV_010377 [Vitis vinifera]
Length = 1571
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 48/131 (36%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLK 127
L FDG + N G G +L + G + R V +A TNN+ EY A ILGL+
Sbjct: 1126 LYFDGVA--NQLGYGIGVLLVSPQGDHIPR---SVRLAFHDQHPITNNIVEYEACILGLE 1180
Query: 128 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
AL+ G K + V GDS LV QIQG WK + L + L +F + H+ R
Sbjct: 1181 TALELGIKQMEVFGDSNLVLRQIQGDWKTKDVKLKPYHAYLELLVARFDDLRYVHLPRAQ 1240
Query: 188 NSEADAQANMG 198
N ADA A +
Sbjct: 1241 NRFADALATLA 1251
>gi|55167977|gb|AAV43845.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1207
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 619 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAG 675
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 676 LRVAAGLGIRRLLVLGDSQLVVNQVSKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 735
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 736 RDNAVAD 742
>gi|21740431|emb|CAD41616.1| OSJNBa0091D06.19 [Oryza sativa Japonica Group]
Length = 1910
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1367 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAG 1423
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1424 LRVAAGLGIRRLLVLGDSQLVVNQVSKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1483
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1484 RDNAVAD 1490
>gi|428279662|ref|YP_005561397.1| hypothetical protein BSNT_03277 [Bacillus subtilis subsp. natto
BEST195]
gi|291484619|dbj|BAI85694.1| hypothetical protein BSNT_03277 [Bacillus subtilis subsp. natto
BEST195]
Length = 132
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS GNPG +G G ++ E + + + +G+ TN AE+ ALI G+K +GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHEGIAESFSIP--IGVHTNQEAEFLALIEGMKLCATRGYQSV 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 66 SFRTDSDIVERATE-LEMVKNKTFQPFVEEITRLKAAFPLFFIKWIPGKQNQKADLLAKE 124
Query: 198 GIYLKD 203
I L +
Sbjct: 125 AIRLNE 130
>gi|14018045|gb|AAK52108.1|AC079936_4 Putative retroelement [Oryza sativa Japonica Group]
Length = 275
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQ 131
+ FD A N +AGAG +L + G R R + + ATNN+A+Y L GL+ A+
Sbjct: 168 MTFDRAL--NSQRAGAGFILTSLTGD---RFRHAIHLNFRATNNIAKYEGLPSGLRAAVA 222
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH 182
G K + V+GDS+LV Q+ +K +N LA + ++L+ KF +I H
Sbjct: 223 LGVKRLIVKGDSELVANQVHKDYKCSNPELAKYLTDVRKLERKFDGVEIRH 273
>gi|147798955|emb|CAN68163.1| hypothetical protein VITISV_015675 [Vitis vinifera]
Length = 1965
Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 46/87 (52%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ + + V GDS LV QIQG WK N L + L
Sbjct: 1392 ATNNIVEYEACILGLETALELEIRQMEVFGDSNLVWRQIQGEWKTRNVELRPYHAYLELL 1451
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F + H+ R N ADA A +
Sbjct: 1452 VRRFDDLRYTHLPRAQNQFADALATLA 1478
>gi|356523173|ref|XP_003530216.1| PREDICTED: uncharacterized protein LOC100814220 [Glycine max]
Length = 2280
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDG---SVVYRLREGVGIATNNVAEYRALILGLKYA 129
L FDGA GN G GAV+ +G RL+ TNN+AEY A +LG++ A
Sbjct: 1708 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFN---CTNNMAEYEACVLGIEKA 1760
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
+ K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N
Sbjct: 1761 IDLRIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQ 1820
Query: 190 EADAQANM 197
ADA A +
Sbjct: 1821 MADALATL 1828
>gi|48475204|gb|AAT44273.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1943
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1360 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1416
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + +K F ++ H+ R
Sbjct: 1417 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDTYVRQVRRMKRHFDGIELRHVPR 1476
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1477 RDNTIAD 1483
>gi|224108063|ref|XP_002314708.1| predicted protein [Populus trichocarpa]
gi|222863748|gb|EEF00879.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L DG SKGNPG AGAG V+R G+ + +GI ++ AE A+ +GL+ A +G+
Sbjct: 86 LNVDGCSKGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAWDRGF 145
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ + ++ DSK+V I G + + + K + + H+ R N AD
Sbjct: 146 RKVDLESDSKVVVGLINGD-SVRVDRNYNIIMQIKGMLGRNWEVTTYHVYREANCVADWL 204
Query: 195 ANMGI 199
AN G+
Sbjct: 205 ANYGL 209
>gi|147775396|emb|CAN67021.1| hypothetical protein VITISV_007533 [Vitis vinifera]
Length = 783
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 46/87 (52%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 281 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDTKLRPYHTYLELL 340
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F + H R N ADA A +
Sbjct: 341 VGRFDDLRYTHQPRAQNQFADALATLA 367
>gi|147865111|emb|CAN79817.1| hypothetical protein VITISV_006609 [Vitis vinifera]
Length = 2155
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1225 FDGAT--NHSGYGIGVLLISLHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1282
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ I V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1283 EIRQIEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1342
Query: 193 AQANMG 198
A A +
Sbjct: 1343 ALATLA 1348
>gi|38567957|emb|CAE75910.1| OSJNBb0115I21.13 [Oryza sativa Japonica Group]
Length = 1938
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1341 LPHTAYR-VMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1397
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1398 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDEIELRHVPR 1457
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1458 RDNTIAD 1464
>gi|38346467|emb|CAE02120.2| OSJNBa0019G23.15 [Oryza sativa Japonica Group]
Length = 1938
Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1341 LPHTAYR-VMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1397
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1398 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDEIELRHVPR 1457
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1458 RDNTIAD 1464
>gi|147797776|emb|CAN69610.1| hypothetical protein VITISV_024102 [Vitis vinifera]
Length = 2037
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLK 127
L FDGA+ N G G +L + G + R V +A TNN+ EY A I GL+
Sbjct: 1487 LYFDGAA--NQSGFGIGILLISPQGDHIPR---SVRLAFSDHHRLTNNIVEYEACITGLE 1541
Query: 128 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 187
AL G + + + GDS LV Q QG+W+ ++ L L ++F + H+ R
Sbjct: 1542 TALDLGIRQLEIHGDSNLVIKQTQGIWRTRDEKLKPYHAYLDLLIDRFDVLRYIHLPRAE 1601
Query: 188 NSEADAQANMG 198
N ADA A +
Sbjct: 1602 NQFADALATLA 1612
>gi|18568247|gb|AAL75984.1|AF466203_13 putative prpol [Zea mays]
Length = 1850
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDG+ AGAG + + G + Y LR A+NNVAEY AL+ GL+ A++
Sbjct: 1444 TMFFDGSLMKT--GAGAGLLFISPLGRHLRYVLRLHFP-ASNNVAEYEALVNGLRIAIEL 1500
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + +GDS+LV Q+ + + E + L++KF ++NHI R N AD
Sbjct: 1501 GVRRLDARGDSQLVIDQVMKNSHCRDPKMEAYYDEVRRLEDKFFGLELNHIARRYNETAD 1560
Query: 193 AQANMG 198
A +
Sbjct: 1561 ELAKIA 1566
>gi|110668352|ref|YP_658163.1| ribonuclease H I [Haloquadratum walsbyi DSM 16790]
gi|109626099|emb|CAJ52550.1| ribonuclease H, type 1 [Haloquadratum walsbyi DSM 16790]
Length = 221
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 47 SINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLR 106
+++ Q SH D ++ L DG+S+GNPG AGAGAV+ D +V+ R+
Sbjct: 69 TVDIQTSHQLGD---------HDFEKLILYTDGSSRGNPGPAGAGAVVETPDETVLCRVG 119
Query: 107 EGVGIAT-NNVAEYRALILGLKYALQK-GYKHIRVQGDSKLVCMQIQGLWK-INNQNLAG 163
VG T NN AEY AL LGL L + G + ++ DS V I +W+ +
Sbjct: 120 RPVGSRTGNNTAEYAALHLGLACVLTRYGVSPLEIRIDSMTV---IGDIWQDATREEFTD 176
Query: 164 LCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ L ++F H++ + ADA A +
Sbjct: 177 YRRVINTLLDEFPDHHWTHVVDAERNPADALATV 210
>gi|110288518|gb|AAP51765.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1416
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 18/125 (14%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
T+ FDG+ + GAG VL + G RL AL+ GL+ A+ G
Sbjct: 1120 TMHFDGSKRLT--GTGAGVVLISPTGE---RLS-------------YALLHGLRIAISLG 1161
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+ + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N AD
Sbjct: 1162 IRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAADR 1221
Query: 194 QANMG 198
AN G
Sbjct: 1222 LANFG 1226
>gi|147783484|emb|CAN72956.1| hypothetical protein VITISV_002875 [Vitis vinifera]
Length = 1391
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 46/86 (53%)
Query: 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 172
TNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 924 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLV 983
Query: 173 EKFQSFQINHILRNLNSEADAQANMG 198
+F + H+ R N ADA A +
Sbjct: 984 GRFDDLRYTHLPRAQNQFADALATLA 1009
>gi|70664032|emb|CAE05102.2| OSJNBa0009K15.22 [Oryza sativa Japonica Group]
Length = 1926
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN AEY L+ G
Sbjct: 1329 LPHTVY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLKYLVRLDFRATNNTAEYEGLLAG 1385
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1386 LRVAAGLGIRRLLVLGDSQLVVNQVSKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1445
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1446 RDNAVAD 1452
>gi|108710404|gb|ABF98199.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1887
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1290 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1346
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1347 LRVAAGLGIRRLLVLGDSQLVVNQVSKEYRCSDPQMDAYVRQVRRMERHFDLIELRHVPR 1406
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1407 RDNAVAD 1413
>gi|13435244|gb|AAK26119.1|AC084406_2 putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1901
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1304 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1360
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1361 LRVAAGLGIRRLLVLGDSQLVVNQVSKEYRCSDPQMDAYVRQVRRMERHFDLIELRHVPR 1420
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1421 RDNAVAD 1427
>gi|58531979|emb|CAE03621.3| OSJNBb0003B01.12 [Oryza sativa Japonica Group]
Length = 2030
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 58 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVA 117
++ N+ +P+ + ++FDG+ AGAG L + G V+ L ATNN+A
Sbjct: 1425 EASTNSSQLPHTTH-WVMQFDGSLSLQ--GAGAGVTLTSPTGDVLRYLVRLDFRATNNMA 1481
Query: 118 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 177
EY L+ GL+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F
Sbjct: 1482 EYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVSKEYRCSDPQMDAYVRQVRRMERHFDG 1541
Query: 178 FQINHILRNLNSEAD 192
++ H+ R N AD
Sbjct: 1542 IELRHVPRRDNMIAD 1556
>gi|147834589|emb|CAN67489.1| hypothetical protein VITISV_032813 [Vitis vinifera]
Length = 1226
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 46/87 (52%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 740 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELL 799
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
+F + H+ R N DA A +
Sbjct: 800 VGRFDDLRYTHLPRAQNQFVDALATLA 826
>gi|32487613|emb|CAE05919.1| OSJNBa0034E24.13 [Oryza sativa Japonica Group]
Length = 523
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN AEY L+ G++ A G K + V+GDS+LV Q+ +K +N L+ E ++L
Sbjct: 384 ATNNTAEYEGLLAGIRAAATLGVKRLIVKGDSELVTNQVHKDYKCSNPELSKYLAEVRKL 443
Query: 172 KEKFQSFQINHILRNLNSEADAQAN 196
+++F ++ H+ R N E D A
Sbjct: 444 EKRFDRIEVRHVYRKDNIEPDDLAR 468
>gi|50355728|gb|AAT75253.1| putative gag-pol precursor [Oryza sativa Japonica Group]
gi|108711464|gb|ABF99259.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1980
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
++FDG+ AGAG +L + G V+ L ATNN+AEY L+ GL+ A G
Sbjct: 1406 MQFDGSLTLQ--GAGAGVILTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGI 1463
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS+LV QI ++ ++ + ++ + ++ F ++ H+ R N+ AD
Sbjct: 1464 RRLLVLGDSQLVVNQICKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNTIAD 1521
>gi|116310872|emb|CAH67813.1| OSIGBa0138H21-OSIGBa0138E01.4 [Oryza sativa Indica Group]
Length = 1949
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 58 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVA 117
++ N+ +P+ + ++FDG+ AGAG L + G V+ L ATNN+A
Sbjct: 1390 EASTNSSQLPHTTH-WVMQFDGSLSLQ--GAGAGVTLTSPTGDVLRYLVRLDFRATNNMA 1446
Query: 118 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 177
EY L+ GL+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F
Sbjct: 1447 EYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVSKEYRCSDPQMDAYVRQVRRMERHFDG 1506
Query: 178 FQINHILRNLNSEAD 192
++ H+ R N AD
Sbjct: 1507 IELRHVPRRDNVIAD 1521
>gi|147769225|emb|CAN71859.1| hypothetical protein VITISV_012970 [Vitis vinifera]
Length = 1710
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + + +R ATNN+ EY A ILGL+ L+
Sbjct: 1210 FDGAA--NHSGYGIGVLLISPHGDHIPKSVRLAFSDRHPATNNIVEYEACILGLETTLEL 1267
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1268 GIRQMEVFGDSNLVLRQIQGEWKTKDVKLRPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1327
Query: 193 AQANMG 198
A A +
Sbjct: 1328 ALATLA 1333
>gi|31432300|gb|AAP53950.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 2026
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 3/135 (2%)
Query: 58 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVA 117
++ N +P+ + ++FDG+ AGAG L + +G V+ L ATNN+A
Sbjct: 1421 EASTNPSQLPHTAH-WVMQFDGSLSLQ--GAGAGVTLTSPNGDVLRYLVRLDFRATNNMA 1477
Query: 118 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 177
EY L+ GL+ A+ G + + V GDS+LV Q+ ++ ++ + ++ + ++ F
Sbjct: 1478 EYEGLLAGLRVAVGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDG 1537
Query: 178 FQINHILRNLNSEAD 192
++ H+ R N AD
Sbjct: 1538 IELRHVPRRDNMIAD 1552
>gi|147767462|emb|CAN71254.1| hypothetical protein VITISV_006362 [Vitis vinifera]
Length = 2154
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGV----GIATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R V ATNN+ EY A ILGL+ AL+
Sbjct: 1628 FDGAA--NQLGFGIGVLLISSQGDHIPRSVRLVFSDRHPATNNIVEYEACILGLETALEL 1685
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
G + + V GDS LV QIQG WK + L + L +F + + R N AD
Sbjct: 1686 GIRQMEVFGDSNLVLRQIQGDWKTRDVKLRSYHAYLELLVGRFDDLRYTRLPRAQNQFAD 1745
Query: 193 AQANMG 198
A A +
Sbjct: 1746 ALATLA 1751
>gi|32489155|emb|CAE04107.1| OSJNBa0096F01.15 [Oryza sativa Japonica Group]
gi|32489171|emb|CAE04552.1| OSJNBa0052P16.1 [Oryza sativa Japonica Group]
Length = 1384
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
++FDG+ AGAG +L + +G V+ L ATNN+AEY L+ GL+ A G
Sbjct: 795 MQFDGSLSLQ--GAGAGVMLTSPNGDVLRYLVRLDFRATNNIAEYEGLLAGLRVAAGLGI 852
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ HI R N AD
Sbjct: 853 RRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHIPRRDNMVAD 910
>gi|31430746|gb|AAP52619.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|62733623|gb|AAX95740.1| RNase H, putative [Oryza sativa Japonica Group]
Length = 2025
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 58 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVA 117
++ N +P+ Y ++FDG+ AGAG L + G V+ L ATNN+A
Sbjct: 1420 EASTNPSQLPHTTY-WVMQFDGSLSLQ--GAGAGVTLTSPTGDVLRYLVRLDFRATNNMA 1476
Query: 118 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 177
EY L+ GL+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F
Sbjct: 1477 EYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDG 1536
Query: 178 FQINHILRNLNSEAD 192
++ H+ R N AD
Sbjct: 1537 IELRHVPRRDNMIAD 1551
>gi|108711681|gb|ABF99476.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1840
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1290 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1346
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1347 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMNAYVRQVRRMERHFDGIELRHVPR 1406
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1407 RDNAVAD 1413
>gi|50540761|gb|AAT77917.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1898
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1348 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1404
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1405 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMNAYVRQVRRMERHFDGIELRHVPR 1464
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1465 RDNAVAD 1471
>gi|224141789|ref|XP_002324246.1| predicted protein [Populus trichocarpa]
gi|222865680|gb|EEF02811.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L DG SKGNPG AGAG V+R G+ + + I ++ AE A+ +GL+ A +G+
Sbjct: 86 LNVDGCSKGNPGVAGAGGVIREHLGAWIGGFARNIDICSSVNAELWAVYVGLQLAWDRGF 145
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ + ++ DSK+V I G + + + K++ + H+ R N AD
Sbjct: 146 RKVDLESDSKVVVGLINGD-SVRVDRNYNIIMQIKDMLGRDWEVTTYHVYREANCVADWL 204
Query: 195 ANMGI 199
AN G+
Sbjct: 205 ANYGL 209
>gi|356510620|ref|XP_003524035.1| PREDICTED: uncharacterized protein LOC100801712 [Glycine max]
Length = 1186
Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVV-YRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ FDGAS N G GAVL + D V + R G TNN+A+Y A L ++ A+
Sbjct: 1035 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFDY-TNNMAKYEACALAVQAAIDS 1091
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K ++V GDS LV Q++G W+ N L KEL + F +H+ N AD
Sbjct: 1092 DVKLLKVYGDSALVIHQLRGEWETRNPKLIPYKAYIKELAKTFDEISFHHVPCEENQMAD 1151
Query: 193 AQANMGIYL 201
A + L
Sbjct: 1152 VLATLASML 1160
>gi|32488015|emb|CAE02878.1| OSJNBb0022F23.15 [Oryza sativa Japonica Group]
Length = 1612
Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1226 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1282
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1283 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1342
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1343 RDNAVAD 1349
>gi|443634811|ref|ZP_21118983.1| hypothetical protein BSI_40620 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443345236|gb|ELS59301.1| hypothetical protein BSI_40620 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 132
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS GNPG +G G ++ E + + + VG+ TN AE+ ALI G+K ++GY+ +
Sbjct: 8 DGASAGNPGPSGVGIFIKHEGKAESFSIP--VGMHTNQEAEFLALIEGMKLCAERGYQSV 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS +V + + N+ +E LK F F I I N +AD A
Sbjct: 66 SFRTDSDIVERAAE-FEMVKNKTYHPYVEEIIRLKAAFPLFFIKWIPGKQNQKADQLAKE 124
Query: 198 GIYLKD 203
I L D
Sbjct: 125 AIRLND 130
>gi|51854439|gb|AAU10818.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1974
Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Query: 65 SVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALIL 124
S P + ++FDG+ AGAG L + G ++ L +ATNN+AEY L+
Sbjct: 1422 SQPPHTAHWVMQFDGSLSLQ--GAGAGVTLTSPSGDILRYLVRLDFLATNNMAEYEGLLA 1479
Query: 125 GLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
GL+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+
Sbjct: 1480 GLRLAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERYFDGIELRHVP 1539
Query: 185 RNLNSEAD 192
R N+ AD
Sbjct: 1540 RRDNTIAD 1547
>gi|62701853|gb|AAX92926.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77549603|gb|ABA92400.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2122
Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 57 ADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNV 116
+ CL + +P+ Y FDG+S GQ G G VL + +G TNN
Sbjct: 1515 GEVCL-VEVIPWKIY-----FDGSS-CKEGQ-GIGVVLISPNGMCYEASVRLEYYCTNNQ 1566
Query: 117 AEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ 176
AEY AL+ GL+ G K++ GDS+LV Q+ G++K + +L ++ F
Sbjct: 1567 AEYNALLFGLQVMEMVGAKYVEAFGDSELVVQQVAGIYKCLDGSLNRYLDSCLDIIANFD 1626
Query: 177 SFQINHILRNLNSEAD--AQANMGIYLKDG 204
+F I HI R NS A+ AQ G +K+G
Sbjct: 1627 NFAIRHIARCDNSRANDLAQQASGYNVKNG 1656
>gi|325968368|ref|YP_004244560.1| ribonuclease H [Vulcanisaeta moutnovskia 768-28]
gi|323707571|gb|ADY01058.1| ribonuclease H [Vulcanisaeta moutnovskia 768-28]
Length = 191
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 77 FDGA-SKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLKY 128
FDGA NPG G D + EG GIA TNNVAEY LI L+
Sbjct: 7 FDGACEPKNPGGVGTYGFAVYNDNDTI---SEGYGIACEPALNCTNNVAEYTGLIKALEC 63
Query: 129 ALQKGY--KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
L Y I V GDS+LV Q+ G++ + ++L L ++A EL F+ ++ I R
Sbjct: 64 LLLHDYGESSIVVHGDSQLVIKQLTGIYNVRTEHLKPLFEKAHELLSHFR-VRLEWIPRE 122
Query: 187 LNSEAD 192
LNS+AD
Sbjct: 123 LNSKAD 128
>gi|224120570|ref|XP_002330975.1| predicted protein [Populus trichocarpa]
gi|222872767|gb|EEF09898.1| predicted protein [Populus trichocarpa]
Length = 326
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDG---SVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+ FDGA N GAGAV+ + D V +L+ G TNN EY A ILG + AL+
Sbjct: 142 MYFDGAV--NVCGNGAGAVIISPDKKQYPVSVKLQFG---CTNNTTEYEACILGFEAALE 196
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
+ I V GDS L+ Q++G W+ + L + +L +F+ + H+ R N A
Sbjct: 197 LNIRKIDVYGDSMLIICQVKGEWQTKEEKLRPYQEYLSKLAGEFEEIEFTHLGREGNQFA 256
Query: 192 DAQANMG 198
DA A +
Sbjct: 257 DALATLA 263
>gi|359488408|ref|XP_003633755.1| PREDICTED: uncharacterized protein LOC100852570 [Vitis vinifera]
Length = 2061
Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1486 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1543
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1544 DIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVARFDDLRYVHLPRAQNRFAD 1603
Query: 193 AQANMG 198
A A +
Sbjct: 1604 ALATLA 1609
>gi|359482809|ref|XP_003632844.1| PREDICTED: protein NYNRIN-like [Vitis vinifera]
Length = 1419
Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 844 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 901
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 902 DIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVTRFDDLRYVHLPRAQNRFAD 961
Query: 193 AQANMG 198
A A +
Sbjct: 962 ALATLA 967
>gi|359479112|ref|XP_003632219.1| PREDICTED: uncharacterized protein LOC100853628 [Vitis vinifera]
Length = 1821
Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1268 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1325
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1326 DIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVARFDDLRYVHLPRAQNRFAD 1385
Query: 193 AQANMG 198
A A +
Sbjct: 1386 ALATLA 1391
>gi|251797095|ref|YP_003011826.1| ribonuclease H [Paenibacillus sp. JDR-2]
gi|247544721|gb|ACT01740.1| ribonuclease H [Paenibacillus sp. JDR-2]
Length = 128
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS GNPG +GAG ++ + V R +G+ N+ AE+R L L+ ++K YK +
Sbjct: 7 DGASAGNPGPSGAGIFIK--NHGEVERYSIPLGVMDNHEAEFRTFTLALELCIRKEYKTV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+ V ++ + + N+ A L EA +L ++F+ F + I + N AD +
Sbjct: 65 SFRTDSQFVNRAVE-IEFVKNKKFAPLLLEALKLTKQFELFFMMWIPSSENKSADQLSRA 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|147852549|emb|CAN82756.1| hypothetical protein VITISV_016014 [Vitis vinifera]
Length = 1853
Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1289 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1346
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1347 DIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVARFDDLRYVHLPRAQNRFAD 1406
Query: 193 AQANMG 198
A A +
Sbjct: 1407 ALATLA 1412
>gi|147775724|emb|CAN75930.1| hypothetical protein VITISV_038505 [Vitis vinifera]
Length = 2157
Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1633 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1690
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1691 DIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVARFDDLRYVHLPRAQNRFAD 1750
Query: 193 AQANMG 198
A A +
Sbjct: 1751 ALATLA 1756
>gi|34761721|gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQK 132
TL FDGA N G GAVL G+ + + R + TNN AEY A I+G++ A+
Sbjct: 1689 TLMFDGAVNMN--GNGVGAVLINPKGAHIPFSARLTFDV-TNNEAEYEACIMGIEEAIDL 1745
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K + + GDS LV Q+ G W N +L + + F+ ++ H+ R+ N AD
Sbjct: 1746 RIKTLDIYGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVRLYHVPRDENQMAD 1805
Query: 193 AQANM 197
A A +
Sbjct: 1806 ALATL 1810
>gi|34761728|gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQK 132
TL FDGA N G GAVL G+ + + R + TNN AEY A I+G++ A+
Sbjct: 1687 TLMFDGAVNMN--GNGVGAVLINPKGAHMPFSARLTFDV-TNNEAEYEACIMGIEEAIDL 1743
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
K + + GDS LV Q+ G W N +L + + F+ ++ H+ R+ N AD
Sbjct: 1744 RIKTLDIFGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVKLYHVPRDENQMAD 1803
Query: 193 AQANMGIYLK 202
A A + +K
Sbjct: 1804 ALATLSSMIK 1813
>gi|78708524|gb|ABB47499.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 108
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQ 131
+ FD A N +AGAG +L + G R R + + ATNN+A+Y L GL+ A+
Sbjct: 1 MTFDRAL--NSQRAGAGFILTSLTGD---RFRHAIHLNFRATNNIAKYEGLPSGLRAAVA 55
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH 182
G K + V+GDS+LV Q+ +K +N LA + ++L+ KF +I H
Sbjct: 56 LGVKRLIVKGDSELVANQVHKDYKCSNPELAKYLTDVRKLERKFDGVEIRH 106
>gi|108862433|gb|ABA97326.2| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 916
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKY 128
N + T+ F+GA N AGAG +L + G + A+NN AEY L+ G++
Sbjct: 351 NNETWTMAFNGAL--NSQGAGAGFILTSPSGDQFKHVIHLNFRASNNTAEYEGLLAGIRA 408
Query: 129 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 188
A G K + V+GDS+LV Q+ +K +N L+ + ++L+++ ++ H+ R N
Sbjct: 409 AAALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAKVRKLEKRLNGIEVRHVYRKDN 468
Query: 189 SEAD 192
E D
Sbjct: 469 IEPD 472
>gi|423397600|ref|ZP_17374801.1| hypothetical protein ICU_03294 [Bacillus cereus BAG2X1-1]
gi|423408458|ref|ZP_17385607.1| hypothetical protein ICY_03143 [Bacillus cereus BAG2X1-3]
gi|401649646|gb|EJS67224.1| hypothetical protein ICU_03294 [Bacillus cereus BAG2X1-1]
gi|401657548|gb|EJS75056.1| hypothetical protein ICY_03143 [Bacillus cereus BAG2X1-3]
Length = 128
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGASKGNPG +GAG ++ V +L +G +N+ AEY AL+ LK+ + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV--QLSLPLGTMSNHEAEYHALLAALKHCKEHNYSIV 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARK 123
Query: 198 GI 199
I
Sbjct: 124 AI 125
>gi|449094693|ref|YP_007427184.1| hypothetical protein C663_2071 [Bacillus subtilis XF-1]
gi|449028608|gb|AGE63847.1| hypothetical protein C663_2071 [Bacillus subtilis XF-1]
Length = 132
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS GNPG +G G ++ E + + + +G+ TN AE+ ALI G+K +GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHEGIAESFSIP--IGVHTNQEAEFLALIEGMKLCATRGYQSV 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 66 SFRTDSDIVERATE-LEMVKNKTFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKE 124
Query: 198 GIYLKD 203
I L +
Sbjct: 125 AIRLNE 130
>gi|15217203|gb|AAK92547.1|AC051624_5 Putative retroelement [Oryza sativa Japonica Group]
gi|31431038|gb|AAP52876.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1963
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN AEY L+ G
Sbjct: 1366 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLSSPSGDVLRYLVRLDFRATNNTAEYEGLLAG 1422
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1423 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1482
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1483 RDNAVAD 1489
>gi|321311665|ref|YP_004203952.1| ribonuclease H [Bacillus subtilis BSn5]
gi|320017939|gb|ADV92925.1| ribonuclease H [Bacillus subtilis BSn5]
Length = 132
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS GNPG +G G ++ E + + + +G+ TN AE+ ALI G+K +GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHEGTAESFSIP--IGVHTNQEAEFLALIEGMKLCATRGYQSV 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 66 SFRTDSDIVERATE-LEMVKNKMFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKE 124
Query: 198 GIYLKD 203
I L +
Sbjct: 125 AIRLNE 130
>gi|9229988|dbj|BAB00646.1| unnamed protein product [Oryza sativa Japonica Group]
gi|11138069|dbj|BAB17742.1| GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1473
Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
++FDG+ AGAG L + G V+ L ATNN+AEY+ L+ GL+ A G
Sbjct: 915 MQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYKGLLAGLRVAAGLGI 972
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R N+ AD
Sbjct: 973 RRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNAVAD 1030
>gi|116309766|emb|CAH66808.1| OSIGBa0135C13.3 [Oryza sativa Indica Group]
Length = 1911
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 67 PYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGL 126
P + ++FDG+ AGAG L + +G V+ L ATNN+AEY L+ GL
Sbjct: 1314 PSHSAHWVMQFDGSLSLQ--GAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGL 1371
Query: 127 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 186
+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1372 RVAAGLGIRRLLVLGDSQLVVNQVSKEYRCSDPQMDAYVRQVRRMERHFDGMELRHVPRR 1431
Query: 187 LNSEAD 192
N AD
Sbjct: 1432 DNMVAD 1437
>gi|38605744|emb|CAE03836.3| OSJNBb0013J13.13 [Oryza sativa Japonica Group]
Length = 1836
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1239 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1295
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1296 LRVAAGLGIRRLLVLGDSQLVANQVCKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1355
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1356 RDNAVAD 1362
>gi|23928443|gb|AAN40029.1| putative gag-pol precursor [Zea mays]
Length = 1313
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
A+NN+AEY AL+ GL+ A++ G + + +GDS+LV Q+ + + C E + L
Sbjct: 988 ASNNMAEYEALVNGLRIAIELGVRRLDARGDSQLVIDQVIKNSHCRDPKMEAYCDEVRRL 1047
Query: 172 KEKFQSFQINHILRNLNSEADAQANMG 198
++KF ++NHI N AD A +
Sbjct: 1048 EDKFYGLEVNHIAWRYNETADELAKIA 1074
>gi|406995480|gb|EKE14192.1| ribonuclease H [uncultured bacterium]
Length = 129
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYA--LQKGYK 135
DG SKGNPG + G V +G ++ ++ +GIATNN AEY+ALI LK + K K
Sbjct: 8 DGGSKGNPGPSSIGGVGYL-NGEKIFEFKKSIGIATNNDAEYKALIEALKNIKNIDKISK 66
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQIN--HILRNLNSEADA 193
I DS+L+ Q++GL+K+ N + + L+++ + IN ++ R N EAD
Sbjct: 67 -IEFNSDSRLMVNQVKGLFKVKNGRIKEYILIIRGLEQEI-NLPINYSYVPREENVEADL 124
Query: 194 QAN 196
N
Sbjct: 125 LVN 127
>gi|147778034|emb|CAN69736.1| hypothetical protein VITISV_041904 [Vitis vinifera]
Length = 1633
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDGA+ N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1125 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1182
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1183 DIRQMEVFGDSNLVLRQIQGDWKTKDVKLRPYHAYLELLVARFDDLRYVHLPRAHNRFAD 1242
Query: 193 AQANMG 198
A A +
Sbjct: 1243 ALATLA 1248
>gi|77551861|gb|ABA94658.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1965
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1407 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAG 1463
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1464 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1523
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1524 RDNTIAD 1530
>gi|90265058|emb|CAH67683.1| H0510A06.8 [Oryza sativa Indica Group]
Length = 1685
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
++FDG+ AGAG L + G V+ L ATNN+AEY L+ GL+ A G
Sbjct: 1096 MQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGI 1153
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R N+ AD
Sbjct: 1154 RRLLVLGDSQLVVNQVSKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNAVAD 1211
>gi|23396194|gb|AAN31788.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|31431648|gb|AAP53392.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2027
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
++FDG+ AGAG +L + +G V+ L ATNN+AEY+ L+ GL+ A G
Sbjct: 1438 MQFDGSLSLQ--GAGAGVMLTSPNGDVLRYLVRLDFRATNNMAEYKGLLAGLRVAAGLGI 1495
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R N AD
Sbjct: 1496 RRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMVAD 1553
>gi|19920185|gb|AAM08617.1|AC107314_8 Putative retroelement [Oryza sativa Japonica Group]
Length = 1783
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1222 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1278
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1279 LRVAAGLGIRRLLVLGDSQLVVNQVCKDYRCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1338
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1339 RDNAVAD 1345
>gi|147767190|emb|CAN62666.1| hypothetical protein VITISV_040012 [Vitis vinifera]
Length = 984
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLKYA 129
FDGA+ N G G +L + G + R VG+A TNN+ EY A ILGL+ A
Sbjct: 627 FDGAT--NHSGYGIGFLLISPHGDHIPR---SVGLAFLDRHLTTNNIVEYEACILGLETA 681
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
+ G + I V GDS ++ QIQG WK + L + L +F + H+ R N
Sbjct: 682 HELGIRQIEVFGDSNMILRQIQGEWKTRDVKLRLYHAYLELLVGRFDDLRYMHLPRVQNQ 741
Query: 190 EADAQANM 197
ADA A +
Sbjct: 742 FADALATL 749
>gi|147777981|emb|CAN69734.1| hypothetical protein VITISV_007859 [Vitis vinifera]
Length = 976
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLKYA 129
FDGA+ N G G +L + G + R V +A TNN+ EY A ILGL+ A
Sbjct: 401 FDGAA--NQSGYGIGVLLVSPQGDHIPR---SVRLAFSDRHPTTNNIVEYEACILGLETA 455
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
L+ + + V GDS LV QIQG WK + L + L +F + H+ R N
Sbjct: 456 LELDIRQMEVFGDSNLVLRQIQGDWKTRDVKLRSYHAYLELLVARFDDLRYVHLPRAQNR 515
Query: 190 EADAQANMG 198
ADA A +
Sbjct: 516 FADALATLA 524
>gi|50838900|gb|AAT81661.1| putative retrotransposon protein [Oryza sativa Japonica Group]
gi|108709838|gb|ABF97633.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1878
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1296 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1352
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1353 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1412
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1413 RDNAVAD 1419
>gi|29126356|gb|AAO66548.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
Length = 1380
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN AEY L+ G++ A G K + V+GDS+LV Q+ +K +N L+ E ++L
Sbjct: 1068 ATNNTAEYEGLLAGIRAAAALGVKRLIVKGDSELVTNQVHKDYKCSNPELSKYITEVRKL 1127
Query: 172 KEKFQSFQINHILRNLNSEADAQA 195
++F ++ H+ R N E D A
Sbjct: 1128 GKRFDGIEVRHVYRKDNIEPDDLA 1151
>gi|384175805|ref|YP_005557190.1| RNase H [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349595029|gb|AEP91216.1| RNase H [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 132
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS GNPG +G G ++ E +V +G+ TN AE+ ALI G+K GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHE--GIVESFSIPIGVHTNQEAEFLALIEGMKLCATLGYQSV 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 66 SFRTDSDIVERATE-LEMVKNKTFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKE 124
Query: 198 GIYLKD 203
I L +
Sbjct: 125 AIRLNE 130
>gi|147778159|emb|CAN60991.1| hypothetical protein VITISV_009628 [Vitis vinifera]
Length = 645
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYAL 130
+ FDGA+ N G G +L + G + R R ATNN+ EY A ILGL+ AL
Sbjct: 95 MYFDGAT--NQSGYGIGVLLVSPQGDHIPRSARLAFSDRHPATNNIVEYEACILGLETAL 152
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ + ++V GDS LV QIQG WK + L + L +F + H+ R N
Sbjct: 153 ELDIRQMKVFGDSNLVLRQIQGDWKTRDVKLKPYHAYLELLVARFDELRYVHLPRAQNRF 212
Query: 191 ADAQANMG 198
A A A +
Sbjct: 213 AGALATLA 220
>gi|158828300|gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L DGASKGNPG A AG +LR +DGS + +GI + +AE + GL A ++
Sbjct: 636 LNTDGASKGNPGLATAGGILRQQDGSWIGGFAVNIGICSAPLAELWRVYYGLYIAWERKI 695
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 194
+ V+ DS+LV + W ++ L+ L + + +I+H+ R N AD
Sbjct: 696 TRLEVEVDSELV-VGFLTTWISDSHPLSFLVRLCYGFISRDWIVRISHVYREANRLADGL 754
Query: 195 AN 196
AN
Sbjct: 755 AN 756
>gi|22773262|gb|AAN06868.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|108706316|gb|ABF94111.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2002
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1405 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1461
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1462 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRIERHFDGIELRHVPR 1521
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1522 RDNTIAD 1528
>gi|46359902|gb|AAS88834.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1937
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 57/105 (54%)
Query: 88 AGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVC 147
AGAG L + G V+ L ATNN+AEY L+ GL+ A G + + V GDS+LV
Sbjct: 1359 AGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVV 1418
Query: 148 MQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
Q+ ++ ++ + ++ + ++ F ++ H+ R N++AD
Sbjct: 1419 NQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNADAD 1463
>gi|108712180|gb|ABF99975.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1413
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN AEY L+ G++ A G K + V+GDS+LV Q+ +K +N L+ E ++L
Sbjct: 1101 ATNNTAEYEGLLAGIRAAAALGVKRLIVKGDSELVTNQVHKDYKCSNPELSKYITEVRKL 1160
Query: 172 KEKFQSFQINHILRNLNSEADAQA 195
++F ++ H+ R N E D A
Sbjct: 1161 GKRFDGIEVRHVYRKDNIEPDDLA 1184
>gi|41393250|gb|AAS01973.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
Length = 1403
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 112 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 171
ATNN AEY L+ G++ A G K + V+GDS+LV Q+ +K +N L+ E ++L
Sbjct: 1091 ATNNTAEYEGLLAGIRAAAALGVKRLIVKGDSELVTNQVHKDYKCSNPELSKYITEVRKL 1150
Query: 172 KEKFQSFQINHILRNLNSEADAQA 195
++F ++ H+ R N E D A
Sbjct: 1151 GKRFDGIEVRHVYRKDNIEPDDLA 1174
>gi|359481118|ref|XP_003632571.1| PREDICTED: uncharacterized protein LOC100854783 [Vitis vinifera]
Length = 2085
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIA-------TNNVAEYRALILGLKYA 129
FDGA+ N G G +L + G + R V + TNN+ EY A ILGL+ A
Sbjct: 1510 FDGAA--NHSGYGIGVLLVSPQGDHISR---SVRLTFPDYYPTTNNIVEYEACILGLETA 1564
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
L+ G + V GDS LV Q++G WK + L + L EKF+ + H+ R N
Sbjct: 1565 LELGITQMDVLGDSDLVLRQVRGDWKTRDAKLKPYHAYLELLIEKFEELKYIHLPRAHNQ 1624
Query: 190 EADAQANMG 198
DA A +
Sbjct: 1625 FVDALATLA 1633
>gi|260447025|emb|CBG76438.1| OO_Ba0013J05-OO_Ba0033A15.25 [Oryza officinalis]
Length = 1625
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
++FDG S PG AGAG + G V+ L ATNN+ EY L++GL+ A + G
Sbjct: 1098 MQFDG-SLALPG-AGAGVTMTLPSGDVLRYLVRLDFRATNNMTEYEGLLVGLRVAAEMGI 1155
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R N+ D
Sbjct: 1156 HRLLVLGDSQLVVNQVSKEYRCSDPQMDAYVRKVRRMERHFDGIELRHVPRRDNAVTD 1213
>gi|108706283|gb|ABF94078.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1729
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
++FDG+ AGAG L + G V+ L ATNN+AEY L+ GL+ A G
Sbjct: 1267 MQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGI 1324
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R N+ AD
Sbjct: 1325 RRLLVLGDSQLVVNQVYKEYRCSDPQMDAYVRQVRHMERHFDGIELRHVPRRDNAVAD 1382
>gi|22773233|gb|AAN06839.1| Putative retroelement [Oryza sativa Japonica Group]
Length = 1741
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
++FDG+ AGAG L + G V+ L ATNN+AEY L+ GL+ A G
Sbjct: 1279 MQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGI 1336
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R N+ AD
Sbjct: 1337 RRLLVLGDSQLVVNQVYKEYRCSDPQMDAYVRQVRHMERHFDGIELRHVPRRDNAVAD 1394
>gi|77554214|gb|ABA97010.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1335
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 772 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAG 828
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 829 LRVAAGLGIRRLLVLGDSQLVVNQVSKEYQCSDPQMDAYVRQVRRMERHFDGIELWHVPR 888
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 889 RDNTVAD 895
>gi|147780025|emb|CAN60064.1| hypothetical protein VITISV_029876 [Vitis vinifera]
Length = 450
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 75 LEFDGASKGNPGQAGAGAVL-RAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
+ FDGA+ N G G +L ++ + + +R TNN+ EY A ILGL+ AL
Sbjct: 141 MYFDGAA--NQSGYGIGVLLVSPQNDHIPWSVRLTFSYRHPITNNIVEYEACILGLETAL 198
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
+ K I V GDS LV QIQG WK + L + L +F + H+ + N
Sbjct: 199 ELDIKQIEVFGDSNLVLRQIQGDWKTRDVKLRSYHAYLELLIARFDDLRYVHLPKVQNRF 258
Query: 191 ADAQANM 197
ADA A +
Sbjct: 259 ADALATL 265
>gi|48475133|gb|AAT44202.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1514
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 956 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1012
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1013 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYQCSDPQMDAYVRQVRRMERHFDRIELRHVPR 1072
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1073 RDNAVAD 1079
>gi|406926384|gb|EKD62619.1| ribonuclease HI [uncultured bacterium]
Length = 143
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG---LKYALQKGY 134
DGAS+GNPG A G ++ +Y+ + + I TNNVAE+ A+++ L+ L +
Sbjct: 11 DGASRGNPGHAAGGFIVFDSKKKKIYQESKFLEITTNNVAEHTAVLMAHEWLQRNLAEKP 70
Query: 135 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQ--INHILRNLNSEAD 192
+ DS+LV Q+ G +KI + +L + + K+L S+Q N+I R N+ AD
Sbjct: 71 AKVEFFVDSQLVVNQLNGNFKIKSSHLKSIVSKTKQLVA-LASYQAVYNYIPRERNTLAD 129
Query: 193 AQAN 196
A N
Sbjct: 130 ALVN 133
>gi|53749349|gb|AAU90208.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1862
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1298 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1354
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1355 LRVAAGLGIRRLLVLGDSQLVVNQLCKEYRCSDPQMDAYVRQVRRIERHFDGIELRHVPR 1414
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1415 RDNAVAD 1421
>gi|38345405|emb|CAE03096.2| OSJNBa0017B10.11 [Oryza sativa Japonica Group]
Length = 1814
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 65 SVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALIL 124
S P + ++FDG+ AGAG L + G V+ L ATNN+AEY L+
Sbjct: 1293 SQPPHTAHWVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLA 1350
Query: 125 GLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
GL+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+
Sbjct: 1351 GLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVP 1410
Query: 185 RNLNSEAD 192
R N+ AD
Sbjct: 1411 RRDNTVAD 1418
>gi|62734737|gb|AAX96846.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77549963|gb|ABA92760.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1401
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYAL 130
T+ FDGA N GAG +L + G + + + + ATNN AEY L+ G++ A
Sbjct: 1036 TMAFDGAL--NSQGVGAGFILTSPLGD---QFKHAIHLNFRATNNTAEYEGLLAGIRAAT 1090
Query: 131 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 190
G + + V+GDS+LV Q+ +K ++ L+ E +L+++F ++ H+ R N E
Sbjct: 1091 ALGVRRLIVKGDSELVANQVHKDYKYSSPELSNYLAEVWKLEKRFDGIEVRHVYRKDNIE 1150
Query: 191 ADAQA 195
+ A
Sbjct: 1151 PNDLA 1155
>gi|62733905|gb|AAX96014.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|62734500|gb|AAX96609.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550188|gb|ABA92985.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 710
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 102 VYRLREGVGIATNNVA----EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKIN 157
V +L GV I ++ EY ALI GL+ A+ G + + V+GDS+LV Q+ W
Sbjct: 460 VQKLLYGVLITVRKLSHYFQEYEALIHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSSL 519
Query: 158 NQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 198
+ N+ +E ++L++KF ++ ++LR+ N AD A+ G
Sbjct: 520 DDNMTAYRQEVRKLEDKFDGLELTYVLRHNNEAADRLAHFG 560
>gi|356551733|ref|XP_003544228.1| PREDICTED: uncharacterized protein LOC100816508 [Glycine max]
Length = 2311
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 12/128 (9%)
Query: 75 LEFDGASK--GNPGQAGAGAVLRAEDGS---VVYRLREGVGIATNNVAEYRALILGLKYA 129
L FDGA GN G GAV+ +G+ RL+ TNN+AEY A +LG++ A
Sbjct: 1739 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFD---CTNNMAEYEACVLGIEKA 1791
Query: 130 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 189
+ K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N
Sbjct: 1792 IDLRIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQ 1851
Query: 190 EADAQANM 197
ADA A +
Sbjct: 1852 MADALATL 1859
>gi|90265165|emb|CAH67733.1| H0522A01.4 [Oryza sativa Indica Group]
gi|116310746|emb|CAH67541.1| H0425E08.9 [Oryza sativa Indica Group]
Length = 1756
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILG 125
+P+ Y ++FDG+ AGAG L + G V+ L ATNN+AEY L+ G
Sbjct: 1213 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1269
Query: 126 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 185
L+ A +H+ V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1270 LRVAAGLRIRHLLVLGDSQLVVNQVSKEYQCSDPQMDAYVRQVRRMECHFDGIELRHVPR 1329
Query: 186 NLNSEAD 192
N+ AD
Sbjct: 1330 RDNAVAD 1336
>gi|223995379|ref|XP_002287373.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976489|gb|EED94816.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 149
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 69/138 (50%), Gaps = 12/138 (8%)
Query: 74 TLEFDGASKGNP-GQAGAGAVLRAED--GSVVYRLREG---VGI-ATNNVAEYRALILGL 126
L FDGASK NP G AG G L D G+ + G +G +NN AEY+ LI GL
Sbjct: 8 VLYFDGASKNNPRGPAGCGFCLYEMDVYGADTQFITNGNSYLGYNVSNNQAEYQGLIDGL 67
Query: 127 KYALQK-GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ---SF-QIN 181
Y L + V+GDS++V Q+ G + +N+ N+ +AK + E + F
Sbjct: 68 SYILHNISCNRVYVRGDSEIVVRQMLGEYNVNSPNIRPYYNDAKSVLEDIEREVDFCDFR 127
Query: 182 HILRNLNSEADAQANMGI 199
HI R N EAD AN I
Sbjct: 128 HISRQKNWEADQLANEAI 145
>gi|38194929|gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133
TL DG+S N +GAG VL VV + + +NN AEY A+I GL A++
Sbjct: 1329 TLYVDGSS--NSRSSGAGVVLEGPGEIVVEQAMKFEFKTSNNQAEYEAIIAGLHLAIELE 1386
Query: 134 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 193
+I + DS+LV Q+ G +++ L K L +F+ H+ R N+ ADA
Sbjct: 1387 VTNITCKSDSRLVVGQLTGEYEVRETLLQQYFHFVKNLLNRFKEISFQHVRRENNTRADA 1446
Query: 194 QANMGIYLKDG 204
+ + K G
Sbjct: 1447 LSRLATLKKKG 1457
>gi|38344801|emb|CAE03002.2| OSJNBa0043L09.21 [Oryza sativa Japonica Group]
Length = 2028
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 58 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVA 117
++ N +P+ + ++FDG+ AGAG L + +G V+ L ATNN+A
Sbjct: 1423 EASTNPSQLPHTAH-WVMQFDGSLSLQ--GAGAGVTLTSPNGDVLRYLVRLDFRATNNMA 1479
Query: 118 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 177
EY L+ GL+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F
Sbjct: 1480 EYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDG 1539
Query: 178 FQINHILRNLNSEAD 192
++ H+ R N AD
Sbjct: 1540 IELRHVPRRDNMIAD 1554
>gi|359489281|ref|XP_003633904.1| PREDICTED: uncharacterized protein LOC100852807 [Vitis vinifera]
Length = 2158
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYR-LREGVG---IATNNVAEYRALILGLKYALQK 132
FDG + N G G +L + G + R +R ATNN+ EY A ILGL+ AL+
Sbjct: 1583 FDGTA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1640
Query: 133 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 192
+ ++V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1641 DIRQMKVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVTRFDDLRYVHLPRAQNRFAD 1700
Query: 193 AQANMG 198
A A +
Sbjct: 1701 ALATLA 1706
>gi|108862185|gb|ABA96443.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1472
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 88 AGAGAVLRAEDG-SVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLV 146
AGA AVL + G + Y R G TNN+AEY A++LGL+ A + G + + ++ DSKLV
Sbjct: 1121 AGAAAVLTSPGGVPIQYAARLQFG-TTNNMAEYEAVLLGLRKAKELGVRCLLIRTDSKLV 1179
Query: 147 CMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 195
+ +++ + + + + +++ F + H+ R N EADA A
Sbjct: 1180 ASHVDKSFEVKEEGMKKYLEAVRSMEKCFAGITVEHLPRGQNEEADALA 1228
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,251,801,254
Number of Sequences: 23463169
Number of extensions: 128528626
Number of successful extensions: 351190
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2125
Number of HSP's successfully gapped in prelim test: 1389
Number of HSP's that attempted gapping in prelim test: 347784
Number of HSP's gapped (non-prelim): 3585
length of query: 215
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 79
effective length of database: 9,168,204,383
effective search space: 724288146257
effective search space used: 724288146257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)