BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027994
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HST|B Chain B, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
pdb|3HST|D Chain D, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
Length = 141
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGS-VVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D S V+ ++ +G ATNNVAEYR LI GL A++
Sbjct: 4 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 63
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ A
Sbjct: 64 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 123
Query: 192 DAQAN 196
D AN
Sbjct: 124 DRLAN 128
>pdb|3U3G|D Chain D, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
pdb|3U3G|B Chain B, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
pdb|3U3G|C Chain C, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
pdb|3U3G|A Chain A, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
Length = 140
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYK-- 135
DG ++GNPG AG G V+ E G+ ++ +G TNNVAEY ALI L+ G K
Sbjct: 9 DGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLV 68
Query: 136 --HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK-EKFQSFQINHILRNLNSEAD 192
+ V+ DS+L+ Q+QG++K+ L + +K E+ + HI R N+ AD
Sbjct: 69 DMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARAD 128
Query: 193 AQANMGI 199
N I
Sbjct: 129 ELVNEAI 135
>pdb|2EHG|A Chain A, Crystal Structure Of Hyperthermophilic Archaeal Rnase Hi
Length = 149
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 20/128 (15%)
Query: 77 FDGA-SKGNPGQAGAGAVLRAEDGSVVY---RLREGVGIA--------TNNVAEYRALIL 124
FDG NPG A G V+Y R EG G+A TNNVAEY LI
Sbjct: 6 FDGLCEPKNPGGI-------ATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLIC 58
Query: 125 GLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
++ L+ G ++GDS+LV Q+ G +K+ + + L ++A ELK+K + I +
Sbjct: 59 LMETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLI-WVP 117
Query: 185 RNLNSEAD 192
R N EAD
Sbjct: 118 REENKEAD 125
>pdb|3ALY|A Chain A, Crystal Structure Of Rnase Hi From Sulfolobus Tokodaii
With C-Terminal Deletion
pdb|3ALY|B Chain B, Crystal Structure Of Rnase Hi From Sulfolobus Tokodaii
With C-Terminal Deletion
Length = 143
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 20/128 (15%)
Query: 77 FDGA-SKGNPGQAGAGAVLRAEDGSVVY---RLREGVGIA--------TNNVAEYRALIL 124
FDG NPG A G V+Y R EG G+A TNNVAEY LI
Sbjct: 6 FDGLCEPKNPGGI-------ATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLIC 58
Query: 125 GLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
++ L+ G ++GDS+LV Q+ G +K+ + + L ++A ELK+K + I +
Sbjct: 59 LMETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLI-WVP 117
Query: 185 RNLNSEAD 192
R N EAD
Sbjct: 118 REENKEAD 125
>pdb|2R7Y|A Chain A, Selenium Derivatized RnaDNA HYBRID IN COMPLEX WITH RNASE H
Catalytic Domain Mutant D132n
pdb|3I8D|A Chain A, The Pairing Geometry Of The Hydrophobic Thymine Analog
2,4- Difluorotoluene In Duplex Dna As Analyzed By X-Ray
Crystallography
pdb|3I8D|C Chain C, The Pairing Geometry Of The Hydrophobic Thymine Analog
2,4- Difluorotoluene In Duplex Dna As Analyzed By X-Ray
Crystallography
Length = 132
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+L D S+GNPG V + G V++ RE + I TNN+ E+ A++ GL+Y ++
Sbjct: 6 SLSVDVGSQGNPGIVEYKGV-DTKTGEVLFE-REPIPIGTNNMGEFLAIVHGLRYLKER 62
>pdb|1ZBL|A Chain A, Bacillus Halodurans Rnase H Catalytic Domain Mutant D192n
In Complex With 12-Mer RnaDNA HYBRID
pdb|1ZBL|B Chain B, Bacillus Halodurans Rnase H Catalytic Domain Mutant D192n
In Complex With 12-Mer RnaDNA HYBRID
Length = 139
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+L D S+GNPG V + G V++ RE + I TNN+ E+ A++ GL+Y ++
Sbjct: 13 SLSVDVGSQGNPGIVEYKGV-DTKTGEVLFE-REPIPIGTNNMGEFLAIVHGLRYLKER 69
>pdb|3D0P|A Chain A, Insights Into RnaDNA HYBRID RECOGNITION AND PROCESSING BY
Rnase H From The Crystal Structure Of A Non-Specific
Enzyme-Dsdna Complex
pdb|3D0P|C Chain C, Insights Into RnaDNA HYBRID RECOGNITION AND PROCESSING BY
Rnase H From The Crystal Structure Of A Non-Specific
Enzyme-Dsdna Complex
pdb|4HTU|A Chain A, Structure Of 5-chlorouracil Modified A:u Base Pair
pdb|4HTU|B Chain B, Structure Of 5-chlorouracil Modified A:u Base Pair
pdb|4HUE|A Chain A, Structure Of 5-chlorouracil Modified G:u Base Pair
pdb|4HUE|B Chain B, Structure Of 5-chlorouracil Modified G:u Base Pair
pdb|4HUF|A Chain A, Structure Of 5-chlorouracil Modified A:u Base Pair
pdb|4HUF|B Chain B, Structure Of 5-chlorouracil Modified A:u Base Pair
pdb|4HUG|A Chain A, Structure Of 5-chlorouracil Modified A:u Base Pairs
pdb|4HUG|B Chain B, Structure Of 5-chlorouracil Modified A:u Base Pairs
Length = 134
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+L D S+GNPG V + G V++ RE + I TNN+ E+ A++ GL+Y ++
Sbjct: 7 SLSVDVGSQGNPGIVEYKGV-DTKTGEVLFE-REPIPIGTNNMGEFLAIVHGLRYLKER 63
>pdb|3EY1|A Chain A, A Conformational Transition In The Structure Of A
2'-Thiomethyl- Modified Dna Visualized At High
Resolution
pdb|3TWH|A Chain A, Selenium Derivatized RnaDNA HYBRID IN COMPLEX WITH RNASE H
CATALYTIC Domain D132n Mutant
Length = 138
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+L D S+GNPG V + G V++ RE + I TNN+ E+ A++ GL+Y ++
Sbjct: 9 SLSVDVGSQGNPGIVEYKGV-DTKTGEVLFE-REPIPIGTNNMGEFLAIVHGLRYLKER 65
>pdb|1ZBF|A Chain A, Crystal Structure Of B. Halodurans Rnase H Catalytic
Domain Mutant D132n
pdb|1ZBI|A Chain A, Bacillus Halodurans Rnase H Catalytic Domain Mutant D132n
In Complex With 12-Mer RnaDNA HYBRID
pdb|1ZBI|B Chain B, Bacillus Halodurans Rnase H Catalytic Domain Mutant D132n
In Complex With 12-Mer RnaDNA HYBRID
pdb|2G8U|A Chain A, B. Halodurans Rnase H Catalytic Domain D132n Mutant In
Complex With Mg2+ And RnaDNA HYBRID (NON-P Nick At The
Active Site)
pdb|3ULD|A Chain A, High Resolution Structure Of DnaRNA HYBRID IN COMPLEX WITH
RNASE H Catalytic Domain D132n Mutant
Length = 142
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+L D S+GNPG V + G V++ RE + I TNN+ E+ A++ GL+Y ++
Sbjct: 13 SLSVDVGSQGNPGIVEYKGV-DTKTGEVLFE-REPIPIGTNNMGEFLAIVHGLRYLKER 69
>pdb|2G8H|A Chain A, B. Halodurans Rnase H Catalytic Domain D192n Mutant In
Complex With Mg2+ And RnaDNA HYBRID (NON-P Nick At The
Active Site)
pdb|2G8I|A Chain A, B. Halodurans Rnase H Catalytic Domain D192n Mutant In
Complex With Mn2+ And RnaDNA HYBRID (NON-P Nick At The
Active Site)
pdb|2G8K|A Chain A, B. Halodurans Rnase H Catalytic Domain D192n Mutant In
Complex With Ca2+ And RnaDNA HYBRID (NON-P Nick At The
Active Site)
Length = 142
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+L D S+GNPG V + G V++ RE + I TNN+ E+ A++ GL+Y ++
Sbjct: 13 SLSVDVGSQGNPGIVEYKGV-DTKTGEVLFE-REPIPIGTNNMGEFLAIVHGLRYLKER 69
>pdb|2G8F|A Chain A, B. Halodurans Rnase H Catalytic Domain E188a Mutant In
Complex With Mg2+ And RnaDNA HYBRID (NON-P Nick At The
Active Site)
pdb|2G8V|A Chain A, B. Halodurans Rnase H Catalytic Domain E188a Mutant In
Complex With Mg2+ And Rna/dna Hybrid (reaction Product)
pdb|2G8W|A Chain A, B. Halodurans Rnase H Catalytic Domain E188a Mutant In
Complex With Ca2+ And RnaDNA HYBRID
Length = 142
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
+L D S+GNPG V + G V++ RE + I TNN+ E+ A++ GL+Y ++
Sbjct: 13 SLSVDVGSQGNPGIVEYKGV-DTKTGEVLFE-REPIPIGTNNMGEFLAIVHGLRYLKER 69
>pdb|1JL2|A Chain A, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
pdb|1JL2|B Chain B, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
pdb|1JL2|C Chain C, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
pdb|1JL2|D Chain D, Crystal Structure Of Tceo Rnase H-A Chimera Combining The
Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
Length = 156
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG++ GNPG G GA+LR YR RE G TNN E +A I GLK
Sbjct: 10 DGSALGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELKAAIEGLK 57
>pdb|3AA3|A Chain A, A52l E. Coli Rnase Hi
Length = 155
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E ALI+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMALIVALE 57
>pdb|3AA2|A Chain A, A52i E. Coli Rnase Hi
Length = 155
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A+I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAIIVALE 57
>pdb|3AA5|X Chain X, A52f E.Coli Rnase Hi
Length = 155
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAFIVALE 57
>pdb|3AA4|A Chain A, A52v E.Coli Rnase Hi
Length = 155
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A+I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAVIVALE 57
>pdb|1F21|A Chain A, Divalent Metal Cofactor Binding In The Kinetic Folding
Trajectory Of E. Coli Ribonuclease Hi
Length = 155
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG++ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSALGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1G15|A Chain A, Co-Crystal Of E. Coli Rnase Hi With Two Mn2+ Ions Bound In
The The Active Site
Length = 155
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG++ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSALGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1RNH|A Chain A, Structure Of Ribonuclease H Phased At 2 Angstroms
Resolution By Mad Analysis Of The Selenomethionyl
Protein
Length = 155
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRXELXAAIVALE 57
>pdb|1RIL|A Chain A, Crystal Structure Of Ribonuclease H From Thermus
Thermophilus Hb8 Refined At 2.8 Angstroms Resolution
Length = 166
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
DGA GNPG G A+LR + L G TNN E +A I GLK
Sbjct: 14 DGACLGNPGPGGWAALLRFHAHEKL--LSGGEACTTNNRMELKAAIEGLK 61
>pdb|1GOB|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 155
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1KVB|A Chain A, E. Coli Ribonuclease Hi D134h Mutant
Length = 155
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1RBU|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1LAW|A Chain A, Stabilization Of Escherichia Coli Ribonuclease Hi By
Cavity- Filling Mutations Within A Hydrophobic Core
Length = 155
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1RCH|A Chain A, Solution Nmr Structure Of Ribonuclease Hi From Escherichia
Coli, 8 Structures
pdb|1RDD|A Chain A, Crystal Structure Of Escherichia Coli Rnase Hi In Complex
With Mg2+ At 2.8 Angstroms Resolution: Proof For A
Single Mg2+ Site
pdb|2RN2|A Chain A, Structural Details Of Ribonuclease H From Escherichia Coli
As Refined To An Atomic Resolution
Length = 155
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1LAV|A Chain A, Stabilization Of Escherichia Coli Ribonuclease Hi By
Cavity- Filling Mutations Within A Hydrophobic Core
Length = 155
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1GOC|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 156
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1RDC|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1KVC|A Chain A, E. Coli Ribonuclease Hi D134n Mutant
Length = 155
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1WSF|A Chain A, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
pdb|1WSF|B Chain B, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
pdb|1WSF|C Chain C, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
pdb|1WSF|D Chain D, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
Length = 155
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1KVA|A Chain A, E. Coli Ribonuclease Hi D134a Mutant
Length = 155
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1RBV|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1RBR|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1WSJ|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|E Chain E, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|F Chain F, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|G Chain G, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|H Chain H, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
Length = 155
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1GOA|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 156
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1RBS|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1RBT|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|2Z1H|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT92KQ105KQ113RQ115KN143KT145K)
Length = 155
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|2Z1G|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105K)
Length = 155
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYERTTNNRMELMAAIVALE 57
>pdb|2Z1I|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105KQ113RQ115K)
pdb|2Z1I|B Chain B, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105KQ113RQ115K)
Length = 155
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYERTTNNRMELMAAIVALE 57
>pdb|2Z1J|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105KQ113RQ115KN143K
T145K)
Length = 155
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYERTTNNRMELMAAIVALE 57
>pdb|3H08|A Chain A, Crystal Structure Of The Ribonuclease H1 From Chlorobium
Tepidum
pdb|3H08|B Chain B, Crystal Structure Of The Ribonuclease H1 From Chlorobium
Tepidum
Length = 146
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
+ T+ DGA+ GNPG+ G GA+L GS + TNN E A I GL+
Sbjct: 4 TITIYTDGAASGNPGKGGWGALLMY--GSSRKEISGYDPATTNNRMELMAAIKGLE 57
>pdb|1XFH|A Chain A, Structure Of Glutamate Transporter Homolog From Pyrococcus
Horikoshii
pdb|1XFH|B Chain B, Structure Of Glutamate Transporter Homolog From Pyrococcus
Horikoshii
pdb|1XFH|C Chain C, Structure Of Glutamate Transporter Homolog From Pyrococcus
Horikoshii
pdb|2NWW|A Chain A, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWW|B Chain B, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWW|C Chain C, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWX|A Chain A, Crystal Structure Of Gltph In Complex With L-Aspartate And
Sodium Ions
pdb|2NWX|B Chain B, Crystal Structure Of Gltph In Complex With L-Aspartate And
Sodium Ions
pdb|2NWX|C Chain C, Crystal Structure Of Gltph In Complex With L-Aspartate And
Sodium Ions
Length = 422
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 44 TSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVY 103
T F N SHL L + L AS G G GAGA++ A V++
Sbjct: 322 TFFIANALGSHLTVGQQL----------TIVLTAVLASIGTAGVPGAGAIMLAM---VLH 368
Query: 104 RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGD 142
+ G+ + NVA A+ILG+ L G + V GD
Sbjct: 369 SV--GLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGD 405
>pdb|2NWL|A Chain A, Crystal Structure Of Gltph In Complex With L-Asp
pdb|2NWL|B Chain B, Crystal Structure Of Gltph In Complex With L-Asp
pdb|2NWL|C Chain C, Crystal Structure Of Gltph In Complex With L-Asp
Length = 422
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 44 TSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVY 103
T F N SHL L + L AS G G GAGA++ A V++
Sbjct: 322 TFFIANALGSHLTVGQQL----------TIVLTAVLASIGTAGVPGAGAIMLAM---VLH 368
Query: 104 RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGD 142
+ G+ + NVA A+ILG+ L G + V GD
Sbjct: 369 SV--GLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGD 405
>pdb|1RDB|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN + A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMQLMAAIVALE 57
>pdb|1JXB|A Chain A, I53a, A Point Mutant Of The Cysteine-Free Variant Of E.
Coli Rnase Hi
Length = 155
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG++ GNPG G GA+LR YR RE G TNN E A + L+
Sbjct: 10 DGSALGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAAVALE 57
>pdb|1JL1|A Chain A, D10a E. Coli Ribonuclease Hi
Length = 155
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Query: 79 GASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
G++ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 11 GSALGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|3FSL|A Chain A, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|B Chain B, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|C Chain C, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|D Chain D, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|E Chain E, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
pdb|3FSL|F Chain F, Crystal Structure Of Tyrosine Aminotransferase Tripple
Mutant (P181q, R183g,A321k) From Escherichia Coli At
2.35 A Resolution
Length = 397
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 2 LREVAAAGSTSISINTQKRHFNEDNCWNTQSVPENYVAAAGSTSFSINT 50
++ + +G+ + + KR+F E W + EN+VA F ++T
Sbjct: 99 IQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVST 147
>pdb|1RDA|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
+G+ GNPG G GA+LR YR RE G TNN E A I+ L+
Sbjct: 10 NGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|B Chain B, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|C Chain C, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|D Chain D, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|E Chain E, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|F Chain F, Tyrosine Aminotransferase From E. Coli
Length = 397
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 2 LREVAAAGSTSISINTQKRHFNEDNCWNTQSVPENYVAAAGSTSFSINT 50
++ + +G+ + + KR+F E W + EN+VA F ++T
Sbjct: 99 IQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVST 147
>pdb|2YV0|X Chain X, Structural And Thermodynamic Analyses Of E. Coli
Ribonuclease Hi Variant With Quintuple Thermostabilizing
Mutations
Length = 155
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G A+LR YR RE G TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYAAILR-------YRGREKTFSAGYTRTTNNRMELMAAIVALE 57
>pdb|1WSI|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
pdb|1WSI|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
pdb|1WSI|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
pdb|1WSI|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
pdb|1WSG|A Chain A, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
pdb|1WSG|B Chain B, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
pdb|1WSG|C Chain C, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
pdb|1WSG|D Chain D, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
Length = 155
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMALMAAIVALE 57
>pdb|1WSH|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSH|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSH|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSH|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSE|A Chain A, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48a) With Mn2+
pdb|1WSE|B Chain B, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48a) With Mn2+
Length = 155
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 12/55 (21%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE-----GVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR YR RE G TNN A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILR-------YRGREKTFSAGYTRTTNNRMALMAAIVALE 57
>pdb|2ZQB|A Chain A, Crystal Structure Of A Psychrotrophic Rnasehi Variant With
Sextuple Thermostabilizing Mutations
pdb|2ZQB|B Chain B, Crystal Structure Of A Psychrotrophic Rnasehi Variant With
Sextuple Thermostabilizing Mutations
pdb|2ZQB|C Chain C, Crystal Structure Of A Psychrotrophic Rnasehi Variant With
Sextuple Thermostabilizing Mutations
pdb|2ZQB|D Chain D, Crystal Structure Of A Psychrotrophic Rnasehi Variant With
Sextuple Thermostabilizing Mutations
Length = 158
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG+ GNPG G G V++ + + + G + TNN E A I+ L+ AL++ K I
Sbjct: 12 DGSCLGNPGPGGYGIVMKYKGHT--KEMSGGFSLTTNNRMELLAPIVALE-ALKEPCK-I 67
Query: 138 RVQGDSKLV 146
+ DS+ V
Sbjct: 68 ILTSDSQYV 76
>pdb|3V8F|A Chain A, Crystal Structure Of Crosslinked Gltph V216c-M385c Mutant
pdb|3V8F|B Chain B, Crystal Structure Of Crosslinked Gltph V216c-M385c Mutant
pdb|3V8F|C Chain C, Crystal Structure Of Crosslinked Gltph V216c-M385c Mutant
Length = 422
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
Query: 43 STSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVV 102
+T F N SHL L + L AS G G GAGA++ A V+
Sbjct: 321 ATFFIANALGSHLTVGQQL----------TIVLTAVLASIGTAGVPGAGAIMLAM---VL 367
Query: 103 YRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGD 142
+ + G+ + NVA A ILG+ L G + V GD
Sbjct: 368 HSV--GLPLTDPNVAAAYACILGIDAILDMGRTMVNVTGD 405
>pdb|3V8G|A Chain A, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|B Chain B, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|C Chain C, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|D Chain D, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|E Chain E, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|F Chain F, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
Length = 422
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
Query: 43 STSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVV 102
+T F N SHL L + L AS G G GAGA++ A V+
Sbjct: 321 ATFFIANALGSHLTVGQQL----------TIVLTAVLASIGTAGVPGAGAIMLAM---VL 367
Query: 103 YRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGD 142
+ + G+ + NV A+ILG+ L G + V GD
Sbjct: 368 HSV--GLPLTDPNVCAAYAMILGIDAILDMGRTMVNVTGD 405
>pdb|3KBC|A Chain A, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
pdb|3KBC|B Chain B, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
pdb|3KBC|C Chain C, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
Length = 425
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
Query: 43 STSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVV 102
+T F N SHL L + L AS G G GAGA++ V+
Sbjct: 321 ATFFIANALGSHLTVGQQL----------TIVLTAVLASIGTAGVPGAGAIMLCM---VL 367
Query: 103 YRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGD 142
+ + G+ + NVA A+ILG+ L G + V GD
Sbjct: 368 HSV--GLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGD 405
>pdb|2E4L|A Chain A, Thermodynamic And Structural Analysis Of Thermolabile
Rnase Hi From Shewanella Oneidensis Mr-1
Length = 158
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
DG+ GNPG G G V+ + + + +G + TNN E A I+ L+
Sbjct: 12 DGSCLGNPGPGGYGIVMNYKGHT--KEMSDGFSLTTNNRMELLAPIVALE 59
>pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase
pdb|3LSQ|B Chain B, Trypanosoma Brucei Seryl-Trna Synthetase
pdb|3LSS|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase In Complex With
Atp
pdb|3LSS|B Chain B, Trypanosoma Brucei Seryl-Trna Synthetase In Complex With
Atp
Length = 484
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 130 LQKGYKHIRVQGD--SKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQIN 181
+++ Y++ ++G+ +L +Q++ L K + +AGL KEA++L+E+ +N
Sbjct: 87 VKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLN 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,229,351
Number of Sequences: 62578
Number of extensions: 245799
Number of successful extensions: 650
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 65
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)