BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027994
(215 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P64956|Y2253_MYCBO Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2253c PE=4 SV=1
Length = 364
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVY-RLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D S V ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ A
Sbjct: 63 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>sp|P64955|Y2228_MYCTU Uncharacterized protein Rv2228c/MT2287 OS=Mycobacterium
tuberculosis GN=Rv2228c PE=1 SV=1
Length = 364
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVY-RLREGVGIATNNVAEYRALILGLKYALQ 131
+E DG S+GNPG AG GAV+ D S V ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 191
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ A
Sbjct: 63 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 122
Query: 192 DAQAN 196
D AN
Sbjct: 123 DRLAN 127
>sp|Q9HSF6|RNH_HALSA Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 /
JCM 11081 / NRC-1) GN=rnhA PE=1 SV=1
Length = 199
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 70/120 (58%)
Query: 77 FDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 136
FDGAS+GNPG A G VL + DG +V + +G ATNN AEY ALI L+ A G+
Sbjct: 74 FDGASRGNPGPAAVGWVLVSGDGGIVAEGGDTIGRATNNQAEYDALIAALEAAADFGFDD 133
Query: 137 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
I ++GDS+LV Q+ G W N+ +L A+EL F + I H+ R N ADA AN
Sbjct: 134 IELRGDSQLVEKQLTGAWDTNDPDLRRKRVRARELLTGFDDWSITHVPRATNERADALAN 193
>sp|P54162|RNHL_BACSU 14.7 kDa ribonuclease H-like protein OS=Bacillus subtilis (strain
168) GN=rnhA PE=1 SV=1
Length = 132
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS GNPG +G G ++ E + + + +G+ TN AE+ ALI G+K +GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHEGKAESFSIP--IGVHTNQEAEFLALIEGMKLCATRGYQSV 65
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS +V + L + N +E LK F F I I N +AD A
Sbjct: 66 SFRTDSDIVERATE-LEMVKNITFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKE 124
Query: 198 GIYLKD 203
I L +
Sbjct: 125 AIRLNE 130
>sp|F9VN79|RNH_SULTO Ribonuclease HI OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=rnhA PE=1 SV=1
Length = 149
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 20/128 (15%)
Query: 77 FDGA-SKGNPGQAGAGAVLRAEDGSVVY---RLREGVGIA--------TNNVAEYRALIL 124
FDG NPG A G V+Y R EG G+A TNNVAEY LI
Sbjct: 6 FDGLCEPKNPGGI-------ATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLIC 58
Query: 125 GLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 184
++ L+ G ++GDS+LV Q+ G +K+ + + L ++A ELK+K + I +
Sbjct: 59 LMETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLI-WVP 117
Query: 185 RNLNSEAD 192
R N EAD
Sbjct: 118 REENKEAD 125
>sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana
GN=At1g65750 PE=3 SV=1
Length = 620
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGAS+GNPG A AG VLR G+ +G + AE + GL +A +K +
Sbjct: 465 DGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRV 524
Query: 138 RVQGDSKLVCMQIQ-GLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 196
++ DS+++ ++ G+ ++ L+ L + +K +I H+ R N AD AN
Sbjct: 525 ELEVDSEVIVGFLKTGI--SDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLAN 582
Query: 197 MGIYLKDG 204
L G
Sbjct: 583 YAFSLSLG 590
>sp|P36921|EBSB_ENTFA Cell wall enzyme EbsB OS=Enterococcus faecalis (strain ATCC 700802
/ V583) GN=ebsB PE=3 SV=2
Length = 135
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYAL--QKGYK 135
D A+KGNPG++G G V + +L +GI +N+ AE++ LI LK A+ + +
Sbjct: 7 DAATKGNPGESGGGIVYLTDQSR--QQLHVPLGIVSNHEAEFKVLIEALKKAIANEDNQQ 64
Query: 136 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 195
+ + DSK+V I+ + N+ E ++L++ F I + + N AD A
Sbjct: 65 TVLLHSDSKIVVQTIEKNYA-KNEKYQPYLAEYQQLEKNFPLLLIEWLPESQNKAADMLA 123
Query: 196 NMGI 199
+
Sbjct: 124 RQAL 127
>sp|Q9ZLH3|RNH_HELPJ Ribonuclease HI OS=Helicobacter pylori (strain J99) GN=rnhA PE=3
SV=1
Length = 143
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG+S GNPG G A+LR +D + G TNN E RAL LK + K HI
Sbjct: 9 DGSSLGNPGPGGYAAILRYKDKEKT--ISGGENFTTNNRMELRALNEALK--ILKRPCHI 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQ 159
+ DS+ VC I +W +N Q
Sbjct: 65 TLYSDSQYVCQAIN-VWLVNWQ 85
>sp|A4SXM6|RNH_POLSQ Ribonuclease H OS=Polynucleobacter necessarius subsp. asymbioticus
(strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) GN=rnhA
PE=3 SV=1
Length = 154
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA KGNPG G GAVLR+ GS + G + TNN E A+I LK Q+ +
Sbjct: 18 DGACKGNPGPGGWGAVLRS--GSHEKHIHGGEKLTTNNRMEICAVIFALKALKQRSS--V 73
Query: 138 RVQGDS----KLVCMQIQGL----WKINNQNLAGLCKEAKELKEKFQSFQIN-HILRNLN 188
+ DS K V ++G WK +++ +EL I+ H +R N
Sbjct: 74 ELWTDSQYVQKGVTEWLEGWKKRGWKTASKDPVKNADLWQELDTLLPDHDISWHWVRGHN 133
Query: 189 SE-----ADAQANMGI 199
ADA AN G+
Sbjct: 134 GHPGNELADALANKGV 149
>sp|Q17XJ7|RNH_HELAH Ribonuclease H OS=Helicobacter acinonychis (strain Sheeba) GN=rnhA
PE=3 SV=1
Length = 143
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG+S GNPG G A+LR +D + + G TNN E RAL LK + K HI
Sbjct: 9 DGSSLGNPGPGGYAAILRYKDKEKI--ISGGEKFTTNNRMELRALNEALK--ILKRPCHI 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQ 159
+ DS+ VC I +W I Q
Sbjct: 65 TLYSDSQYVCQAIN-VWLIGWQ 85
>sp|Q1GDG1|RNH_RUEST Ribonuclease H OS=Ruegeria sp. (strain TM1040) GN=rnhA PE=3 SV=1
Length = 157
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE---GVGIATNNVAEYRALILGLKYALQKGY 134
DGA GNPG G GA+LRA DG V + RE G TNN E A I L+ +L +
Sbjct: 9 DGACSGNPGPGGWGALLRAMDGETVLKERELKGGEKETTNNRMELLAAIHALE-SLARPS 67
Query: 135 KHIRVQGDSKLVCMQIQGL---WKINNQNLAGLCKEAK--ELKEKFQSFQINH 182
K I V DS V + G WK N + K K EL ++ + Q H
Sbjct: 68 K-ITVVTDSAYVKNGVTGWIFGWKKNGWKTSA-KKPVKNVELWQRLDAAQSRH 118
>sp|Q1CTK9|RNH_HELPH Ribonuclease H OS=Helicobacter pylori (strain HPAG1) GN=rnhA PE=3
SV=1
Length = 143
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG+S GNPG G A+LR +D + G TNN E RAL LK + K I
Sbjct: 9 DGSSLGNPGPGGYAAILRYKDKEKT--ISGGEEFTTNNRMELRALNEALK--ILKRPCRI 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 197
+ DS+ VC I +W +N Q K+ F + + + + M
Sbjct: 65 TLYSDSQYVCQAIN-VWLVNWQ------------KKNFSKVKNVDLWKEFLKVSKGHLIM 111
Query: 198 GIYLK--DGQVEAE-CSSFTK 215
+++K +G E E C S K
Sbjct: 112 AVWIKGHNGHAENERCDSLAK 132
>sp|Q0K8W6|RNH_CUPNH Ribonuclease H OS=Cupriavidus necator (strain ATCC 17699 / H16 /
DSM 428 / Stanier 337) GN=rnhA PE=3 SV=1
Length = 145
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ DGA KGNPG+ G GAVL A G+ + G TNN E A+I L+ AL++
Sbjct: 4 VTIYSDGACKGNPGRGGWGAVLVA--GASEKEMFGGEPNTTNNRMEMTAVIEALR-ALKR 60
Query: 133 GYKHIRVQGDSKLVCMQIQGL--------WKINNQNLAGLCKEAKELKEKFQSFQIN-HI 183
+RV DS+ V I WK ++ +EL Q QI+ H
Sbjct: 61 PCV-VRVYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQELDTLAQPHQISWHW 119
Query: 184 LRNLNS-----EADAQANMGI 199
+R N ADA AN G+
Sbjct: 120 VRGHNGHPGNERADALANRGV 140
>sp|Q5LNJ2|RNH_RUEPO Ribonuclease H OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171
/ DSS-3) GN=rnhA PE=3 SV=1
Length = 155
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE---GVGIATNNVAEYRALILGLKYALQKGY 134
DGA GNPG G G +LRA +G V + RE G TNN E A I L+ L++
Sbjct: 9 DGACSGNPGPGGWGVLLRAIEGETVLKERELCGGEAETTNNRMELLAAINALE-TLERPS 67
Query: 135 KHIRVQGDSKLVCMQIQGL---WKINNQNLAGLCKEAK--ELKEKFQSFQINH 182
K I V DS V + G WK N AG K K EL ++ Q H
Sbjct: 68 K-ITVVTDSAYVKNGVTGWIFGWKRNGWKTAG-KKPVKNVELWQRLDLAQARH 118
>sp|P54164|YPEP_BACSU Uncharacterized protein YpeP OS=Bacillus subtilis (strain 168)
GN=ypeP PE=4 SV=2
Length = 226
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 63 TQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLR--EGVGIATNNVAEYR 120
T+ + T+ FDG+ AG G V+ G +RLR + + TNN AEY
Sbjct: 65 TEELAQEPDDITVYFDGSFDKESELAGLGIVIYYSLGGTRHRLRKNKSFRLKTNNEAEYA 124
Query: 121 ALILGLKYALQKGYKH--IRVQGDSKLVCMQIQGLW 154
AL ++ + G I ++GDS +V Q+ G W
Sbjct: 125 ALYEAIREVRELGASRNSITIKGDSLVVLNQLDGSW 160
>sp|Q28V43|RNH_JANSC Ribonuclease H OS=Jannaschia sp. (strain CCS1) GN=rnhA PE=3 SV=1
Length = 157
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE---GVGIATNNVAEYRALILGLK 127
DGA GNPG G GA++RA+DG + + RE G TNN E A I L+
Sbjct: 9 DGACSGNPGPGGWGALMRAKDGDTILKERELKGGEADTTNNRMELLAAISALE 61
>sp|P56120|RNH_HELPY Ribonuclease HI OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=rnhA PE=3 SV=1
Length = 143
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG+S GNPG G A+LR +D + G TNN E RAL LK + K I
Sbjct: 9 DGSSLGNPGPGGYAAILRYKDKEKT--ISGGEEFTTNNRMELRALNEALK--ILKRPCRI 64
Query: 138 RVQGDSKLVCMQIQGLWKINNQ 159
+ DS+ VC I +W N Q
Sbjct: 65 TLYSDSQYVCQAIN-VWLANWQ 85
>sp|Q1QH30|RNH_NITHX Ribonuclease H OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnhA PE=3 SV=1
Length = 151
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 22/155 (14%)
Query: 61 LNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYR 120
+N+ ++P+ T+ DGA GNPG G GA+LR G + L+ G TNN E
Sbjct: 1 MNSSALPH----VTIFTDGACSGNPGPGGWGAILRF--GEIEKELKGGEPHTTNNRMELL 54
Query: 121 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGL---WKINNQNLAG--LCKEA---KELK 172
A I L+ AL+K + + DS+ V I WK N A K A + L
Sbjct: 55 AAISALE-ALKKAAS-VDLTTDSQYVRQGITSWIHNWKRNGWRTADKKPVKNADLWQRLD 112
Query: 173 EKFQSFQIN------HILRNLNSEADAQANMGIYL 201
Q Q+ H + N AD A G+ L
Sbjct: 113 TALQPHQVRWHWIKGHAGHDENERADQLAREGVAL 147
>sp|A8LLC1|RNH_DINSH Ribonuclease H OS=Dinoroseobacter shibae (strain DFL 12) GN=rnhA
PE=3 SV=1
Length = 157
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYR---LREGVGIATNNVAEYRALILGLKYALQKGY 134
DGA GNPG G GA+L A DG V + L+ G TNN E A I L+ AL++
Sbjct: 9 DGACSGNPGPGGWGALLIARDGDTVVKERALKGGEAETTNNRMELLAAIHALE-ALERPA 67
Query: 135 KHIRVQGDSKLVCMQIQGL---WK-----------INNQNLAGLCKEAKELKEKFQSFQI 180
+ + V DS V + G WK + N++L A+ E +
Sbjct: 68 R-LTVVTDSAYVKGGVTGWIHGWKRNGWKTSTKKPVKNEDLWRRLDAAQARHEVQWEWVK 126
Query: 181 NHILRNLNSEADAQANMGI-YLKDGQVEA 208
H N ADA A G+ K G+ +A
Sbjct: 127 GHAGHPENERADALAREGMAPFKPGKSKA 155
>sp|A1B840|RNH_PARDP Ribonuclease H OS=Paracoccus denitrificans (strain Pd 1222) GN=rnhA
PE=3 SV=1
Length = 155
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLRE---GVGIATNNVAEYRALILGLKYALQKGY 134
DGA GNPG G G ++RA DG + + RE G TNN E A I L+ AL +
Sbjct: 9 DGACSGNPGPGGWGVLMRAMDGDRMLKERELSGGEAETTNNRMELMAAISALE-ALTR-P 66
Query: 135 KHIRVQGDSKL----VCMQIQGLWKINNQNLAGLCKEAK--ELKEKFQSFQINHILR 185
I V DS V I G WK N A K K +L ++ + Q H +R
Sbjct: 67 SEITVTTDSAYVKNGVTQWIHG-WKKNGWRTADR-KPVKNADLWQRLDAAQARHQVR 121
>sp|B8HPS9|RNH_CYAP4 Ribonuclease H OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141)
GN=rnhA PE=3 SV=1
Length = 157
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA GNPG G G V+ DGS V+ + TNN E +A I L++ G+ +
Sbjct: 11 DGACSGNPGPGGWGVVVYFGDGS-VHEMGGAAAATTNNRMEMQAAIAALEFCQAAGHPPV 69
Query: 138 RVQGDSKLV 146
+ DS+ V
Sbjct: 70 ILYTDSEYV 78
>sp|Q7VDY9|RNH_PROMA Ribonuclease H OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=rnhA PE=3 SV=1
Length = 165
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK----- 132
DGA GNPG G GA++R EDGSV +E G TN L L+ L+K
Sbjct: 14 DGACSGNPGPGGWGALIRFEDGSV----QEFGGFETNTTNNRMELTAALE-VLKKLRDFD 68
Query: 133 GYKHIRVQGDSKLVC 147
H+R++ DSK +
Sbjct: 69 RDPHLRIRTDSKYLI 83
>sp|Q5PBQ8|RNH_ANAMM Ribonuclease H OS=Anaplasma marginale (strain St. Maries) GN=rnhA
PE=3 SV=2
Length = 154
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGL 126
DGA GNPG G GAVLR DG R+ G TNN E A+I+ L
Sbjct: 14 DGACSGNPGPGGWGAVLRFGDGG-ERRISGGSDDTTNNRMELTAVIMAL 61
>sp|Q46Z81|RNH_CUPPJ Ribonuclease H OS=Cupriavidus pinatubonensis (strain JMP134 / LMG
1197) GN=rnhA PE=3 SV=1
Length = 145
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA KGNPG+ G GAVL A G+ L G TNN E A+I L+ AL++ +
Sbjct: 9 DGACKGNPGRGGWGAVLVA--GTNEKELFGGEANTTNNRMEMTAVIEALR-ALKRPCT-V 64
Query: 138 RVQGDSKLVCMQIQGL--------WKINNQNLAGLCKEAKELKEKFQSFQIN-HILRNLN 188
+V DS+ V I WK ++ +EL Q +I H +R N
Sbjct: 65 QVYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQELDTLVQPHKITWHWVRGHN 124
Query: 189 SE-----ADAQANMGI 199
ADA AN G+
Sbjct: 125 GHPGNERADALANRGV 140
>sp|Q31H49|RNH_THICR Ribonuclease H OS=Thiomicrospira crunogena (strain XCL-2) GN=rnhA
PE=3 SV=1
Length = 145
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DG +GNPG G GA+LR G V L+ TNN E A I GLK AL++ K +
Sbjct: 9 DGGCRGNPGPGGWGALLRF--GGVEKELKGAELDTTNNRMELTAAIEGLK-ALKRPCK-V 64
Query: 138 RVQGDSKLV---CMQIQGLWKINNQNLA 162
+ DS+ V Q WK NN A
Sbjct: 65 TLTTDSQYVKNGITQWMTNWKKNNWKTA 92
>sp|Q2RPU6|RNH_RHORT Ribonuclease H OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB
8255) GN=rnhA PE=3 SV=1
Length = 166
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA GNPG G G +LR G L G TNN E A+I GL+ AL++ +
Sbjct: 19 DGACSGNPGPGGWGTILRW--GDTEKELWGGETPTTNNRMELMAVIRGLE-ALRRPVT-V 74
Query: 138 RVQGDSKLVCMQIQGL---WKINNQNLA 162
+ DS+ V I G WK N A
Sbjct: 75 TIHTDSRYVHDGITGWIHGWKRNGWKTA 102
>sp|A4FMU3|RNH_SACEN Ribonuclease H OS=Saccharopolyspora erythraea (strain NRRL 23338)
GN=rnhA PE=3 SV=1
Length = 155
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGY 134
L DGA GNPG G G VLR G + G TNN E A+I GL AL +
Sbjct: 13 LYTDGACSGNPGPGGWGVVLRY--GHHEREMYGGETATTNNKMELTAVIEGLA-ALTRPV 69
Query: 135 KHIRVQGDSKLVCMQI 150
+R+ DS V I
Sbjct: 70 PLVRIHTDSTYVLKGI 85
>sp|Q1LL89|RNH_RALME Ribonuclease H OS=Ralstonia metallidurans (strain CH34 / ATCC 43123
/ DSM 2839) GN=rnhA PE=3 SV=1
Length = 145
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ DGA KGNPG G GAVL A G L G TNN E A+I L+ AL++
Sbjct: 4 VTIYSDGACKGNPGPGGWGAVLVA--GGHEKELFGGESPTTNNRMELMAVIEALR-ALKR 60
Query: 133 GYKHIRVQGDS----KLVCMQIQGL----WK------INNQNLAGLCKEAKELKEKFQSF 178
+ + DS K + I G WK + N +L EA++ + +
Sbjct: 61 PCI-VNIYTDSQYVQKGISEWIHGWKARGWKTADKKPVKNADLWQALDEAQKPHQITWHW 119
Query: 179 QINHILRNLNSEADAQANMGI 199
H N ADA AN G+
Sbjct: 120 VRGHNGHPGNERADALANRGV 140
>sp|Q1QW64|RNH_CHRSD Ribonuclease H OS=Chromohalobacter salexigens (strain DSM 3043 /
ATCC BAA-138 / NCIMB 13768) GN=rnhA PE=3 SV=1
Length = 164
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
T+ DGA +GNPG G GAVLR G L+ G + TNN E A I L+
Sbjct: 13 VTIYTDGACRGNPGPGGWGAVLRY--GQHEKTLKGGEAVTTNNRMELMAAIQALR 65
>sp|Q3SP51|RNH_NITWN Ribonuclease H OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC
25391) GN=rnhA PE=3 SV=1
Length = 154
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 61 LNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYR 120
+N+ ++P+ T+ DGA GNPG G GA+LR G + L+ G TNN E
Sbjct: 1 MNSPALPH----VTIFTDGACSGNPGPGGWGAILRF--GDIEKELKGGEPHTTNNRMELL 54
Query: 121 ALILGLKYALQK 132
A I L+ AL++
Sbjct: 55 AAISALE-ALKR 65
>sp|Q5QZL3|RNH_IDILO Ribonuclease H OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM
15497 / L2-TR) GN=rnhA PE=3 SV=1
Length = 157
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
N + L DG+ GNPG G GAVL E G L +G + TNN E A I GL+
Sbjct: 3 NSKTVHLYTDGSCLGNPGPGGYGAVL--EYGKHHKELSQGYRLTTNNRMEMLATIAGLR 59
>sp|Q3A827|RNH_PELCD Ribonuclease H OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd
1) GN=rnhA PE=3 SV=1
Length = 152
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGI---ATNNVAEYRALILGLKYALQKGY 134
DGA GNPG G G +LR + R+RE G TNN E I GL+ AL +
Sbjct: 13 DGACSGNPGPGGFGTLLRCGE-----RVRELSGFDPETTNNRMELLGAIAGLE-ALTRPC 66
Query: 135 KHIRVQGDSKLVC 147
+ +R+ DS+ VC
Sbjct: 67 R-VRLTTDSQYVC 78
>sp|A1KV38|RNH_NEIMF Ribonuclease H OS=Neisseria meningitidis serogroup C / serotype 2a
(strain ATCC 700532 / FAM18) GN=rnhA PE=3 SV=1
Length = 145
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
L DGA KGNPG G G ++R GS L G TNN E A+I GLK
Sbjct: 7 LYTDGACKGNPGAGGWGVLMRY--GSHEKELFGGEAQTTNNRMELTAVIEGLK 57
>sp|Q5F7K9|RNH_NEIG1 Ribonuclease H OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA
1090) GN=rnhA PE=3 SV=1
Length = 145
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
L DGA KGNPG G G ++R GS L G TNN E A+I GLK
Sbjct: 7 LYTDGACKGNPGAGGWGVLMRY--GSREKELFGGEAQTTNNRMELTAVIEGLK 57
>sp|Q9JYE5|RNH_NEIMB Ribonuclease HI OS=Neisseria meningitidis serogroup B (strain MC58)
GN=rnhA PE=3 SV=1
Length = 145
Score = 37.7 bits (86), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
L DGA KGNPG G G ++R GS L G TNN E A+I GLK
Sbjct: 7 LYTDGACKGNPGAGGWGVLMRY--GSHEKELFGGEAQTTNNRMELTAVIEGLK 57
>sp|Q9JTD9|RNH_NEIMA Ribonuclease HI OS=Neisseria meningitidis serogroup A / serotype 4A
(strain Z2491) GN=rnhA PE=3 SV=1
Length = 145
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 75 LEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
L DGA KGNPG G G ++R GS L G TNN E A+I GLK
Sbjct: 7 LYTDGACKGNPGAGGWGVLMRY--GSHEKELFGGEAQTTNNRMELTAVIEGLK 57
>sp|A4WNV1|RNH_RHOS5 Ribonuclease H OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
2.4.3) GN=rnhA PE=3 SV=1
Length = 151
Score = 37.7 bits (86), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYR---LREGVGIATNNVAEYRALILGLKYALQKGY 134
DGA GNPG G G ++ A +G V + L+ G + TNN E A I L+ AL +
Sbjct: 9 DGACSGNPGPGGWGVLMLAREGEAVVKERTLQGGEALTTNNRMELMAAISALE-ALTRPT 67
Query: 135 KHIRVQGDSKL----VCMQIQGLWKINNQNLAGLCKEAK--ELKEKFQSFQINH 182
+ I + DS V I G WK N A K K EL E+ + Q H
Sbjct: 68 E-ITIVTDSAYVKNGVTTWIHG-WKRNGWKTADR-KPVKNAELWERLDAAQQRH 118
>sp|Q2ND39|RNH_ERYLH Ribonuclease H OS=Erythrobacter litoralis (strain HTCC2594) GN=rnhA
PE=3 SV=1
Length = 144
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGL 126
DGA KGNPG G G +LR G L G TNN E RA I GL
Sbjct: 9 DGACKGNPGPGGWGVLLRM--GKHEKELSGGEPETTNNRMELRAAIEGL 55
>sp|Q9KEI9|RNH1_BACHD Ribonuclease H OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=rnhA PE=1 SV=1
Length = 196
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 74 TLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKY 128
+L D S+GNPG V + G V++ RE + I TNN+ E+ A++ GL+Y
Sbjct: 67 SLSVDVGSQGNPGIVEYKGV-DTKTGEVLFE-REPIPIGTNNMGEFLAIVHGLRY 119
>sp|A5EAL2|RNH_BRASB Ribonuclease H OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=rnhA PE=3 SV=1
Length = 154
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQ 131
+ ++ DGA GNPG G GA+LR D L+ G TNN E A I L+ AL+
Sbjct: 6 TVSIYTDGACSGNPGPGGWGAILRFGDKE--KELKGGEPHTTNNRMELMAAISALE-ALK 62
Query: 132 KGYKHIRVQGDSKLVCMQIQGL---WKINNQNLA 162
K + + + DS+ V I G WK N A
Sbjct: 63 KSCQ-VELYTDSQYVRQGITGWIHGWKRNGWKTA 95
>sp|B4EUG3|RNH_PROMH Ribonuclease H OS=Proteus mirabilis (strain HI4320) GN=rnhA PE=3
SV=1
Length = 159
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
DG+ GNPG G GA+LR + L EG + TNN E A I+ L+
Sbjct: 10 DGSCLGNPGPGGYGAILRYQQHEKT--LSEGFFMTTNNRMELLAAIVALE 57
>sp|A4Z216|RNH_BRASO Ribonuclease H OS=Bradyrhizobium sp. (strain ORS278) GN=rnhA PE=3
SV=1
Length = 154
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA GNPG G GA+LR D L+ G TNN E A I L+ AL+K + +
Sbjct: 12 DGACSGNPGPGGWGAILRFGDKE--KELKGGEPHTTNNRMELMAAISALE-ALKKSCQ-V 67
Query: 138 RVQGDSKLVCMQIQGL---WKINNQNLA 162
+ DS+ V I G WK N A
Sbjct: 68 ELYTDSQYVRQGITGWIHGWKRNGWKTA 95
>sp|Q7WCJ8|RNH_BORBR Ribonuclease H OS=Bordetella bronchiseptica (strain ATCC BAA-588 /
NCTC 13252 / RB50) GN=rnhA PE=3 SV=1
Length = 155
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 137
DGA KGNPG G G ++RA G + G TNN E A+I GL+ AL++ + +
Sbjct: 18 DGACKGNPGPGGWGVLMRA--GQHEKTMHGGERQTTNNRMELMAVIEGLR-ALKRPCR-V 73
Query: 138 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK---------EKFQSFQI------NH 182
+ DS+ V M+ W N + + K +K E+ Q+ H
Sbjct: 74 TIHTDSQYV-MKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVRGH 132
Query: 183 ILRNLNSEADAQANMGI 199
N ADA AN G+
Sbjct: 133 AGDPGNERADALANQGV 149
>sp|Q83EK3|RNH_COXBU Ribonuclease H OS=Coxiella burnetii (strain RSA 493 / Nine Mile
phase I) GN=rnhA PE=3 SV=1
Length = 154
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
DGA +GNPG G G +LR +L GV TNN E A I GLK
Sbjct: 14 DGACRGNPGPGGWGVLLRYNQHE--RQLHGGVANTTNNQMELTAAIEGLK 61
>sp|A9NB52|RNH_COXBR Ribonuclease H OS=Coxiella burnetii (strain RSA 331 / Henzerling
II) GN=rnhA PE=3 SV=1
Length = 154
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
DGA +GNPG G G +LR +L GV TNN E A I GLK
Sbjct: 14 DGACRGNPGPGGWGVLLRYNQHE--RQLHGGVANTTNNQMELTAAIEGLK 61
>sp|A9KGQ0|RNH_COXBN Ribonuclease H OS=Coxiella burnetii (strain Dugway 5J108-111)
GN=rnhA PE=3 SV=1
Length = 154
Score = 37.0 bits (84), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
DGA +GNPG G G +LR +L GV TNN E A I GLK
Sbjct: 14 DGACRGNPGPGGWGVLLRYNQHE--RQLHGGVANTTNNQMELTAAIEGLK 61
>sp|B6J1Y7|RNH_COXB2 Ribonuclease H OS=Coxiella burnetii (strain CbuG_Q212) GN=rnhA PE=3
SV=1
Length = 154
Score = 37.0 bits (84), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
DGA +GNPG G G +LR +L GV TNN E A I GLK
Sbjct: 14 DGACRGNPGPGGWGVLLRYNQHE--RQLHGGVANTTNNQMELTAAIEGLK 61
>sp|A9KLJ9|RNH_CLOPH Ribonuclease H OS=Clostridium phytofermentans (strain ATCC 700394 /
DSM 18823 / ISDg) GN=rnhA PE=3 SV=1
Length = 158
Score = 37.0 bits (84), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 74 TLEFDGASKGNP-GQAGAGAVLRAEDGSVVYRLRE---GVGIATNNVAEYRALILGLKYA 129
T+ DGA++GNP G G G +L D + V +RE G TNN E A I+GL+ A
Sbjct: 4 TIYTDGAARGNPDGPGGYGTILSYIDSTGVEHIREYSGGYKKTTNNRMELMAAIVGLE-A 62
Query: 130 LQK 132
L K
Sbjct: 63 LTK 65
>sp|B6J5V1|RNH_COXB1 Ribonuclease H OS=Coxiella burnetii (strain CbuK_Q154) GN=rnhA PE=3
SV=1
Length = 154
Score = 37.0 bits (84), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 78 DGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLK 127
DGA +GNPG G G +LR +L GV TNN E A I GLK
Sbjct: 14 DGACRGNPGPGGWGVLLRYNQHE--RQLHGGVANTTNNQMELTAAIEGLK 61
>sp|Q8XZ91|RNH_RALSO Ribonuclease H OS=Ralstonia solanacearum (strain GMI1000) GN=rnhA
PE=3 SV=1
Length = 151
Score = 37.0 bits (84), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 73 CTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQK 132
T+ DGA KGNPG G G VL + G L G + TNN E A+I + AL++
Sbjct: 4 VTVYSDGACKGNPGLGGWGTVLVS--GGHEKELFGGEAVTTNNRMELMAVIEAFR-ALKR 60
Query: 133 GYKHIRVQGDSKLVCMQIQGL---WK-----------INNQNLAGLCKEAKELKEKFQSF 178
+ ++V DS+ V I WK + N +L E E +
Sbjct: 61 PCR-VKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVVTHEVSWHW 119
Query: 179 QINHILRNLNSEADAQANMGIYLKDGQVEA 208
H N ADA AN G+ + ++A
Sbjct: 120 VKGHAGHPGNERADALANKGVEIARQAIQA 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,420,752
Number of Sequences: 539616
Number of extensions: 3053512
Number of successful extensions: 8826
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 264
Number of HSP's that attempted gapping in prelim test: 8749
Number of HSP's gapped (non-prelim): 316
length of query: 215
length of database: 191,569,459
effective HSP length: 113
effective length of query: 102
effective length of database: 130,592,851
effective search space: 13320470802
effective search space used: 13320470802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)