Query 027994
Match_columns 215
No_of_seqs 215 out of 1377
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 06:56:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u3g_D Ribonuclease H, RNAse H 100.0 2E-31 6.8E-36 199.5 13.0 132 71-202 2-138 (140)
2 3hst_B Protein RV2228C/MT2287; 100.0 4.5E-31 1.5E-35 198.1 14.8 132 72-203 3-135 (141)
3 2ehg_A Ribonuclease HI; RNAse 100.0 2.3E-29 7.9E-34 190.9 13.5 131 73-205 2-138 (149)
4 2qkb_A Ribonuclease H1, HS-RNA 99.9 1.2E-25 4E-30 171.5 13.7 131 68-202 3-152 (154)
5 3h08_A RNH (ribonuclease H); R 99.9 3.3E-26 1.1E-30 172.9 10.5 127 71-202 3-145 (146)
6 3qio_A GAG-POL polyprotein; RN 99.9 2.9E-25 1E-29 168.5 12.3 125 68-201 8-147 (150)
7 2lsn_A Reverse transcriptase; 99.9 5.8E-25 2E-29 169.0 12.8 130 71-201 6-163 (165)
8 1ril_A Ribonuclease H; hydrola 99.9 6.3E-26 2.2E-30 175.0 6.8 130 69-203 5-150 (166)
9 1jl1_A Ribonuclease HI; RNAse 99.9 3.7E-25 1.3E-29 168.9 10.3 127 72-203 4-145 (155)
10 2e4l_A Ribonuclease HI, RNAse 99.9 8E-25 2.7E-29 167.5 11.6 126 71-201 5-145 (158)
11 3p1g_A Xenotropic murine leuke 99.9 1.4E-23 4.7E-28 161.5 13.4 135 66-205 17-160 (165)
12 2kq2_A Ribonuclease H-related 99.9 5E-25 1.7E-29 166.7 4.3 129 70-206 4-142 (147)
13 1zbf_A Ribonuclease H-related 99.8 9.3E-21 3.2E-25 142.0 8.4 101 69-172 8-112 (142)
14 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 3.6E-20 1.2E-24 167.4 10.9 118 70-199 434-555 (555)
15 4htu_A Ribonuclease H, RNAse H 99.8 6E-20 2.1E-24 135.4 8.2 99 72-173 5-107 (134)
16 2zd1_A Reverse transcriptase/r 99.8 6.9E-20 2.4E-24 165.6 7.5 118 69-198 436-557 (557)
17 2zd1_B P51 RT; P51/P66, hetero 90.1 2.2 7.6E-05 36.7 10.2 83 67-155 319-407 (428)
18 1rw3_A POL polyprotein; RNA an 87.4 0.12 4.1E-06 45.0 0.3 76 70-152 344-427 (455)
19 3ugs_B Undecaprenyl pyrophosph 75.4 18 0.00061 28.3 8.6 88 90-187 10-103 (225)
20 1uwz_A Cytidine deaminase; CDD 73.9 8.8 0.0003 27.5 6.1 56 87-143 23-79 (136)
21 2fr5_A Cytidine deaminase; tet 72.5 7.9 0.00027 28.2 5.6 56 87-143 35-91 (146)
22 2z3g_A Blasticidin-S deaminase 72.2 8.3 0.00028 27.4 5.5 55 87-143 26-80 (130)
23 4h8e_A Undecaprenyl pyrophosph 65.8 4.2 0.00014 32.6 3.0 34 110-143 45-78 (256)
24 2zd1_A Reverse transcriptase/r 64.0 24 0.00081 31.2 8.0 79 66-149 320-404 (557)
25 3n4p_A Terminase subunit UL89 63.4 40 0.0014 27.0 8.2 75 69-143 59-142 (279)
26 1r5t_A Cytidine deaminase; zin 56.3 20 0.00069 25.8 5.1 56 87-143 31-88 (142)
27 2d30_A Cytidine deaminase; pur 54.8 28 0.00096 25.0 5.6 56 87-143 32-88 (141)
28 3tue_A Tryparedoxin peroxidase 49.5 50 0.0017 25.5 6.7 47 86-133 144-190 (219)
29 3sbc_A Peroxiredoxin TSA1; alp 46.5 57 0.0019 25.1 6.6 47 86-133 140-186 (216)
30 2lsn_A Reverse transcriptase; 45.6 8.8 0.0003 28.4 1.7 22 111-132 49-70 (165)
31 2vg0_A Short-chain Z-isoprenyl 44.8 81 0.0028 24.5 7.3 66 113-185 27-96 (227)
32 3mpz_A Cytidine deaminase; ssg 44.6 37 0.0013 24.7 4.9 55 88-143 46-101 (150)
33 3r2n_A Cytidine deaminase; str 42.3 42 0.0014 24.0 4.9 55 88-143 31-86 (138)
34 3dmo_A Cytidine deaminase; str 38.6 68 0.0023 22.9 5.4 56 87-143 31-89 (138)
35 2nx8_A TRNA-specific adenosine 38.4 46 0.0016 24.8 4.7 53 89-142 37-91 (179)
36 2b3j_A TRNA adenosine deaminas 37.2 50 0.0017 24.0 4.7 54 88-142 27-82 (159)
37 2g84_A Cytidine and deoxycytid 37.0 70 0.0024 24.2 5.7 39 90-128 50-91 (197)
38 3sgv_B Undecaprenyl pyrophosph 36.8 21 0.00071 28.5 2.7 34 110-143 38-71 (253)
39 1wwr_A TRNA adenosine deaminas 35.4 54 0.0018 24.3 4.7 54 88-142 43-98 (171)
40 3dh1_A TRNA-specific adenosine 35.1 51 0.0018 24.8 4.6 40 89-129 47-88 (189)
41 2a8n_A Cytidine and deoxycytid 35.1 47 0.0016 23.6 4.2 53 88-141 24-78 (144)
42 1mu2_A HIV-2 RT; HIV-2 reverse 32.5 53 0.0018 28.9 4.9 53 69-128 321-376 (555)
43 1wkq_A Guanine deaminase; doma 29.8 61 0.0021 23.8 4.1 52 90-142 34-87 (164)
44 2vg3_A Undecaprenyl pyrophosph 28.5 1.8E+02 0.0061 23.4 6.9 31 113-143 79-109 (284)
45 4g2e_A Peroxiredoxin; redox pr 28.2 84 0.0029 22.1 4.6 36 91-126 121-156 (157)
46 3b8f_A Putative blasticidin S 27.9 1.1E+02 0.0039 21.6 5.2 54 89-143 24-78 (142)
47 1xcc_A 1-Cys peroxiredoxin; un 27.6 1.4E+02 0.0049 22.4 6.2 42 91-133 130-171 (220)
48 3a2v_A Probable peroxiredoxin; 26.4 1.4E+02 0.0049 23.2 6.0 42 91-133 126-167 (249)
49 1z3a_A TRNA-specific adenosine 24.7 75 0.0026 23.3 3.8 39 89-128 30-70 (168)
50 2v2g_A Peroxiredoxin 6; oxidor 24.4 1.8E+02 0.006 22.3 6.2 42 91-133 129-170 (233)
51 3oj6_A Blasticidin-S deaminase 24.0 1.4E+02 0.0049 21.7 5.2 53 88-142 51-103 (158)
52 3fxd_A Protein ICMQ; helix bun 23.4 98 0.0034 18.5 3.3 16 118-133 9-24 (57)
53 2d2r_A Undecaprenyl pyrophosph 23.3 2.6E+02 0.0089 21.9 6.9 31 113-143 39-69 (245)
54 1ctt_A Cytidine deaminase; hyd 22.9 1.1E+02 0.0039 24.7 4.8 58 87-144 208-267 (294)
55 1prx_A HORF6; peroxiredoxin, h 22.6 1.8E+02 0.006 22.0 5.8 42 91-133 133-174 (224)
56 3j20_M 30S ribosomal protein S 20.5 2.4E+02 0.0081 20.0 6.9 64 72-141 14-83 (137)
No 1
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.97 E-value=2e-31 Score=199.48 Aligned_cols=132 Identities=33% Similarity=0.469 Sum_probs=123.2
Q ss_pred CeEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCe----eEEEEeChHHH
Q 027994 71 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYK----HIRVQGDSKLV 146 (215)
Q Consensus 71 ~~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~----~v~I~tDS~~v 146 (215)
..++||||||+.++++.+|+|+++++++|..+...+...+..||++||+.|++.||+++.+.+.+ +|.|+|||++|
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHH
Confidence 36899999999999999999999999999887777777778899999999999999999999988 99999999999
Q ss_pred HHHHhcccccCChhHHHHHHHHHHH-HhcCCceEEEEeCCCCCHHHHHHHHHhhccc
Q 027994 147 CMQIQGLWKINNQNLAGLCKEAKEL-KEKFQSFQINHILRNLNSEADAQANMGIYLK 202 (215)
Q Consensus 147 i~~i~~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~hv~r~~N~~AD~LAk~a~~~~ 202 (215)
++++++.|+.++..+..+++++..+ ..+|..+.|.||+|++|+.||.||++|+...
T Consensus 82 i~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~~ 138 (140)
T 3u3g_D 82 VRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEAIDKA 138 (140)
T ss_dssp HHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHHHHHHHH
T ss_pred HHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHHHHHHhc
Confidence 9999999998888999999999999 8998899999999999999999999998754
No 2
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.97 E-value=4.5e-31 Score=198.11 Aligned_cols=132 Identities=39% Similarity=0.572 Sum_probs=122.8
Q ss_pred eEEEEEcccccCCCCceEEEEEEEeCC-CcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeChHHHHHHH
Q 027994 72 SCTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 150 (215)
Q Consensus 72 ~~~i~tDGS~~~~~~~~G~G~v~~~~~-g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~vi~~i 150 (215)
.++||||||+.++++.+|+|+++++++ |..+...+...+..||++||+.|++.||+++.+.+.++|.|+|||++|++++
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i 82 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHH
Confidence 589999999999999999999999987 6666677777788999999999999999999999999999999999999999
Q ss_pred hcccccCChhHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHhhcccC
Q 027994 151 QGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKD 203 (215)
Q Consensus 151 ~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~hv~r~~N~~AD~LAk~a~~~~~ 203 (215)
++.|+.++..+..++++++.+...|..+.|.||+|++|+.||.||+.|+....
T Consensus 83 ~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~~~ 135 (141)
T 3hst_B 83 SGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLANDAMDAAA 135 (141)
T ss_dssp TTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred hCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHHHHHHhc
Confidence 99999999899999999999999999999999999999999999999997653
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.96 E-value=2.3e-29 Score=190.88 Aligned_cols=131 Identities=31% Similarity=0.377 Sum_probs=117.9
Q ss_pred EEEEEccccc-CCCCceEE-EEEEEeCCCcEEEEeeeccC----cccchHHhHHHHHHHHHHHHHcCCeeEEEEeChHHH
Q 027994 73 CTLEFDGASK-GNPGQAGA-GAVLRAEDGSVVYRLREGVG----IATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLV 146 (215)
Q Consensus 73 ~~i~tDGS~~-~~~~~~G~-G~v~~~~~g~~~~~~~~~~~----~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~v 146 (215)
++|||||||+ +|++.+|+ |+++++ +|..+...+...+ ..||++||+.|++.||+.+.+.+.++|.|+|||++|
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~-~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~v 80 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYL-DNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLV 80 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEEC-SSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEE-CCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHH
Confidence 6899999999 79999996 999999 7777655544433 789999999999999999999999999999999999
Q ss_pred HHHHhcccccCChhHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHhhcccCCc
Q 027994 147 CMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQ 205 (215)
Q Consensus 147 i~~i~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~hv~r~~N~~AD~LAk~a~~~~~~~ 205 (215)
++++++.|+.+++.+..+++++..+...| .+.|.||+|++|+.||+||++|+..+...
T Consensus 81 i~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~~~N~~AD~LA~~a~~~~~~~ 138 (149)
T 2ehg_A 81 IKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPREENKEADRLSRVAYELVRRG 138 (149)
T ss_dssp HHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCGGGCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCCcccHHHHHHHHHHHHhhccC
Confidence 99999999988888999999999999998 59999999999999999999999876443
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.93 E-value=1.2e-25 Score=171.46 Aligned_cols=131 Identities=20% Similarity=0.124 Sum_probs=107.0
Q ss_pred CCCCeEEEEEcccccCCCCc---eEEEEEEEeCCCcEEEEeeecc-CcccchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 68 YNCYSCTLEFDGASKGNPGQ---AGAGAVLRAEDGSVVYRLREGV-GIATNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 68 ~~~~~~~i~tDGS~~~~~~~---~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
++.+.++|||||||.++++. +|+|+++.+.+... .+..+ +..||+.|||.|++.||+++.+.+.++|.|+|||
T Consensus 3 ~~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~---~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS 79 (154)
T 2qkb_A 3 HMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLN---VGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNS 79 (154)
T ss_dssp EETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTC---EEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred CCCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCcee---EEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECc
Confidence 34578999999999988754 89999988755432 23333 4689999999999999999999999999999999
Q ss_pred HHHHHHHhc--------ccccCC---hhHHHHHHHHHHHHhcCCceEEEEeCC----CCCHHHHHHHHHhhccc
Q 027994 144 KLVCMQIQG--------LWKINN---QNLAGLCKEAKELKEKFQSFQINHILR----NLNSEADAQANMGIYLK 202 (215)
Q Consensus 144 ~~vi~~i~~--------~~~~~~---~~~~~l~~~i~~l~~~~~~~~~~hv~r----~~N~~AD~LAk~a~~~~ 202 (215)
++|++.+++ .|+... ..+..+++++..++..+. +.|.||++ ++|+.||+||++|+..+
T Consensus 80 ~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~-v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 80 MFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMD-IQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCE-EEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCc-eEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 999999987 343332 246789999999988764 99999997 45999999999999865
No 5
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.93 E-value=3.3e-26 Score=172.95 Aligned_cols=127 Identities=26% Similarity=0.285 Sum_probs=106.2
Q ss_pred CeEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeChHHHHHHH
Q 027994 71 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 150 (215)
Q Consensus 71 ~~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~vi~~i 150 (215)
..++|||||||.++++.+|+|+++++.+ .....+...+..||++|||.|++.||+.+.+ .++|.|+|||++|++.+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~--~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i 78 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGS--SRKEISGYDPATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAM 78 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETT--EEEEEEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECC--eeEEeecCCCCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHH
Confidence 3689999999999999999999999864 3345566667889999999999999998875 47999999999999999
Q ss_pred hccc----ccCC--------hhHHHHHHHHHHHHhcCCceEEEEeC----CCCCHHHHHHHHHhhccc
Q 027994 151 QGLW----KINN--------QNLAGLCKEAKELKEKFQSFQINHIL----RNLNSEADAQANMGIYLK 202 (215)
Q Consensus 151 ~~~~----~~~~--------~~~~~l~~~i~~l~~~~~~~~~~hv~----r~~N~~AD~LAk~a~~~~ 202 (215)
++.| +.++ ..+..+++++..+...+ .+.|.||+ +++|+.||+||++|+...
T Consensus 79 ~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~-~v~~~~V~gH~g~~~N~~AD~LA~~a~~~~ 145 (146)
T 3h08_A 79 NEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLH-RVTFHKVKGHSDNPYNSRADELARLAIKEN 145 (146)
T ss_dssp HSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHS-EEEEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhC-ceEEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence 8733 3332 24678999999998876 48888887 999999999999999764
No 6
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.93 E-value=2.9e-25 Score=168.48 Aligned_cols=125 Identities=22% Similarity=0.188 Sum_probs=101.9
Q ss_pred CCCCeEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeChHHHH
Q 027994 68 YNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVC 147 (215)
Q Consensus 68 ~~~~~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~vi 147 (215)
|..+.++|||||||++|++.+|+|+++.+..+.. ...+..|||+||+.|++.||+.+ + ++|.|+|||++|+
T Consensus 8 P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~-----~~~~~~Tnn~aEl~A~i~AL~~~---~-~~v~i~tDS~~v~ 78 (150)
T 3qio_A 8 PIVGAETFYVDGAANRETKLGKAGYVTNRGRQKV-----VTLTDTTNQKTELQAIYLALQDS---G-LEVNIVTDSQYAL 78 (150)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEE-----EEESSCCHHHHHHHHHHHHHHHS---C-SEEEEEESCHHHH
T ss_pred CCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEE-----EeCCCCCHHHHHHHHHHHHHHhC---C-CcEEEEeCcHHHH
Confidence 4456899999999999999999999997654321 13568999999999999999963 4 8999999999999
Q ss_pred HHHhc---ccccCCh--------hHHHHHHHHHHHHhcCCceEEEEeCCCC----CHHHHHHHHHhhcc
Q 027994 148 MQIQG---LWKINNQ--------NLAGLCKEAKELKEKFQSFQINHILRNL----NSEADAQANMGIYL 201 (215)
Q Consensus 148 ~~i~~---~~~~~~~--------~~~~l~~~i~~l~~~~~~~~~~hv~r~~----N~~AD~LAk~a~~~ 201 (215)
+.+++ .|+.+++ .+.++++++.+++..+..+.|.||+++. |+.||+||++|+..
T Consensus 79 ~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 79 GIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 99986 3444433 3567898888777778889999999887 99999999999875
No 7
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.92 E-value=5.8e-25 Score=169.03 Aligned_cols=130 Identities=26% Similarity=0.249 Sum_probs=104.6
Q ss_pred CeEEEEEcccccCCCCc-----eEEEEEEEeCCC--cEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 71 YSCTLEFDGASKGNPGQ-----AGAGAVLRAEDG--SVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 71 ~~~~i~tDGS~~~~~~~-----~G~G~v~~~~~g--~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
..++|||||||.+||++ +|+|+++...+. ..........+..+++.||+.|+..+|+.+++.+ .+|.|+|||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS 84 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDS 84 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeCh
Confidence 45899999999999886 999999986443 3333344444567888999999999998888877 579999999
Q ss_pred HHHHHHHhc---ccccCCh--------hHHHHHHHHHHHHhcCCceEEEEeC----------CCCCHHHHHHHHHhhcc
Q 027994 144 KLVCMQIQG---LWKINNQ--------NLAGLCKEAKELKEKFQSFQINHIL----------RNLNSEADAQANMGIYL 201 (215)
Q Consensus 144 ~~vi~~i~~---~~~~~~~--------~~~~l~~~i~~l~~~~~~~~~~hv~----------r~~N~~AD~LAk~a~~~ 201 (215)
+||++.+++ .|+.+++ .+.+||+++.+++..+..+.|.||+ +++|+.||+||++|+..
T Consensus 85 ~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~~ 163 (165)
T 2lsn_A 85 FYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSYV 163 (165)
T ss_dssp HHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhhh
Confidence 999999986 5555443 4678999999988877789999997 34699999999999853
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.92 E-value=6.3e-26 Score=175.01 Aligned_cols=130 Identities=23% Similarity=0.221 Sum_probs=105.0
Q ss_pred CCCeEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeChHHHHH
Q 027994 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCM 148 (215)
Q Consensus 69 ~~~~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~vi~ 148 (215)
+...++|||||||.++++.+|+|+|+++.++.. .++...+..||+.|||.|++.||+++.+. .+|.|+|||++|++
T Consensus 5 ~m~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~--~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~ 80 (166)
T 1ril_A 5 PRKRVALFTDGACLGNPGPGGWAALLRFHAHEK--LLSGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKK 80 (166)
T ss_dssp -CCCCCEEEEEEESSTTEEEEEEEEECBTTBCC--EECCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHH
T ss_pred CCccEEEEECccccCCCCCEEEEEEEEECCEEE--EEecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHH
Confidence 346799999999999999999999998765432 23444567899999999999999977654 48999999999999
Q ss_pred HHhc----ccccCCh--------hHHHHHHHHHHHHhcCCceEEEEeC----CCCCHHHHHHHHHhhcccC
Q 027994 149 QIQG----LWKINNQ--------NLAGLCKEAKELKEKFQSFQINHIL----RNLNSEADAQANMGIYLKD 203 (215)
Q Consensus 149 ~i~~----~~~~~~~--------~~~~l~~~i~~l~~~~~~~~~~hv~----r~~N~~AD~LAk~a~~~~~ 203 (215)
.+++ .|+.+++ .+..+++++..++..+ .+.|.||+ +++|+.||.||++|+....
T Consensus 81 ~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 81 AFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPH-RVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp HHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTS-EEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred HHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcC-eEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 9998 3333322 3568999999988875 68888887 9999999999999998764
No 9
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.92 E-value=3.7e-25 Score=168.86 Aligned_cols=127 Identities=23% Similarity=0.265 Sum_probs=105.2
Q ss_pred eEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeChHHHHHHHh
Q 027994 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQ 151 (215)
Q Consensus 72 ~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~vi~~i~ 151 (215)
.++|||||||.++++.+|+|+++++.++. ...+...+..||+.|||.|++.||+.+.+. ++|.|+|||++|++.++
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~--~~~~~~~~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGRE--KTFSAGYTRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEE--EEEEEEEEEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeE--EEEecCCCCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHHH
Confidence 58999999999999999999999986542 334455567899999999999999987753 79999999999999999
Q ss_pred c---ccccCCh--------hHHHHHHHHHHHHhcCCceEEEEeC----CCCCHHHHHHHHHhhcccC
Q 027994 152 G---LWKINNQ--------NLAGLCKEAKELKEKFQSFQINHIL----RNLNSEADAQANMGIYLKD 203 (215)
Q Consensus 152 ~---~~~~~~~--------~~~~l~~~i~~l~~~~~~~~~~hv~----r~~N~~AD~LAk~a~~~~~ 203 (215)
+ .|+.+++ .+..+++++..+...+ .+.|.||+ +++|+.||+||+.|+..+.
T Consensus 80 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 80 QWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp TTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTC-EEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhhcccccccCCccCCHHHHHHHHHHHccC-ceEEEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 7 3443322 3568899999888764 78999988 8899999999999998764
No 10
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.92 E-value=8e-25 Score=167.55 Aligned_cols=126 Identities=22% Similarity=0.260 Sum_probs=104.3
Q ss_pred CeEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeChHHHHHHH
Q 027994 71 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 150 (215)
Q Consensus 71 ~~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~vi~~i 150 (215)
..++|||||||.++++.+|+|+|+++.+ .....+...+..||+.|||.|++.||+.+.+. ++|.|+|||++|++.+
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~--~~~~~~~~~~~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~i 80 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKG--HTKEMSDGFSLTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQGI 80 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETT--EEEEEEEEEEEECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECC--EEEEEecCcCCCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHHH
Confidence 4699999999999999999999998854 23345555567899999999999999987543 7999999999999999
Q ss_pred hc--------ccccCC---hhHHHHHHHHHHHHhcCCceEEEEeC----CCCCHHHHHHHHHhhcc
Q 027994 151 QG--------LWKINN---QNLAGLCKEAKELKEKFQSFQINHIL----RNLNSEADAQANMGIYL 201 (215)
Q Consensus 151 ~~--------~~~~~~---~~~~~l~~~i~~l~~~~~~~~~~hv~----r~~N~~AD~LAk~a~~~ 201 (215)
++ .|+... ..+..+++.+..++..+ .+.|.||+ +++|+.||+||+.|+..
T Consensus 81 ~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 81 MTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLH-QIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTS-EEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccccccCCCcccCHHHHHHHHHHHccC-cEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 87 443322 13568899999888764 78999988 88999999999999987
No 11
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.91 E-value=1.4e-23 Score=161.51 Aligned_cols=135 Identities=22% Similarity=0.065 Sum_probs=103.4
Q ss_pred CCCCCCeEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeChHH
Q 027994 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKL 145 (215)
Q Consensus 66 ~~~~~~~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~ 145 (215)
.|.+...++|||||||.+|++.+|+|+++... +..+ ......+..|||+||+.|++.||+++ ..+++.|+|||++
T Consensus 17 ~P~~~~~i~iytDGs~~~npG~~g~G~vi~~~-~~~~-~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~ 91 (165)
T 3p1g_A 17 QPIPDADYTWYTDGSSFLQEGQRRAGAAVTTE-TEVI-WARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRY 91 (165)
T ss_dssp SCCTTCSEEEEEEEEEEEETTEEEEEEEEECS-SCEE-EEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHH
T ss_pred CCCCCCCEEEEEEcccCCCCCceEEEEEEEEC-CEEE-EEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHH
Confidence 33444579999999999999999999999874 4433 23334457899999999999999987 3589999999999
Q ss_pred HHHHHhcccccCChhHHHHHHHHHHHHhcCCceEEEEeCCCC---------CHHHHHHHHHhhcccCCc
Q 027994 146 VCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL---------NSEADAQANMGIYLKDGQ 205 (215)
Q Consensus 146 vi~~i~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~hv~r~~---------N~~AD~LAk~a~~~~~~~ 205 (215)
|++.+-.....+.-.+.++|+++...+..+..+.|.||+.+. |+.||+||++|+..+...
T Consensus 92 vi~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~~~ 160 (165)
T 3p1g_A 92 AFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLE 160 (165)
T ss_dssp HHHHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCCCc
Confidence 999882110112224667888886655567789999998655 999999999999876543
No 12
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.90 E-value=5e-25 Score=166.73 Aligned_cols=129 Identities=20% Similarity=0.212 Sum_probs=101.9
Q ss_pred CCeEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeee-c--cC---cccchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 70 CYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE-G--VG---IATNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 70 ~~~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~-~--~~---~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
.+.++|||||||++ +.+|+|+++++ +|.. ...+. . .+ ..|||.|||.|++.||+++.+.+. +|.|+|||
T Consensus 4 ~~~i~iytDGs~~~--g~~G~G~vi~~-~g~~-~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS 78 (147)
T 2kq2_A 4 RTEYDVYTDGSYVN--GQYAWAYAFVK-DGKV-HYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDY 78 (147)
T ss_dssp TSCCEEECCCCCBT--TBCEEEEEEEE-TTEE-EEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCC
T ss_pred CCeEEEEECCCCCC--CCcEEEEEEEE-CCEE-EEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECc
Confidence 45799999999986 88999999988 4543 23333 2 12 469999999999999999999998 99999999
Q ss_pred HHHHHHHhcccccCChhHHHHHHHHHHHHhcCCceEEEEeC----CCCCHHHHHHHHHhhcccCCce
Q 027994 144 KLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL----RNLNSEADAQANMGIYLKDGQV 206 (215)
Q Consensus 144 ~~vi~~i~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~hv~----r~~N~~AD~LAk~a~~~~~~~~ 206 (215)
+.+.+++.+.|+.+.+....+.+.++.+.. .+.|.||+ +++|+.||+||++|+.....+-
T Consensus 79 ~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~~~ 142 (147)
T 2kq2_A 79 AGIAFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDLEH 142 (147)
T ss_dssp STHHHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCTTC
T ss_pred HHHHHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcccccc
Confidence 999999999998887666555555555433 45665554 7889999999999998776543
No 13
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.83 E-value=9.3e-21 Score=142.00 Aligned_cols=101 Identities=26% Similarity=0.338 Sum_probs=83.5
Q ss_pred CCCeEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeChHHHHH
Q 027994 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCM 148 (215)
Q Consensus 69 ~~~~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~vi~ 148 (215)
+..+++|||||||++|++.+|+|+|++ .+|..+. .+..++..|||+|||.|++.||+++.+.+. +|.|+|||++|++
T Consensus 8 ~~~~~~iy~DGa~~gNpG~~G~G~vl~-~~g~~~~-~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~ 84 (142)
T 1zbf_A 8 EIIWESLSVDVGSQGNPGIVEYKGVDT-KTGEVLF-EREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIK 84 (142)
T ss_dssp CCCSSSEEEEEEECSSSEEEEEEEEET-TTCCEEE-ECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHH
T ss_pred CCCeEEEEEeeccCCCCCCeEEEEEEE-eCCEEEE-EecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHH
Confidence 346899999999999999999999998 6676554 334456789999999999999999999998 9999999999999
Q ss_pred HHhccccc----CChhHHHHHHHHHHHH
Q 027994 149 QIQGLWKI----NNQNLAGLCKEAKELK 172 (215)
Q Consensus 149 ~i~~~~~~----~~~~~~~l~~~i~~l~ 172 (215)
++++.|.. +...+.++|+.+.++.
T Consensus 85 w~~~~~~k~~~~~~v~n~dLw~~l~~~~ 112 (142)
T 1zbf_A 85 WVKDKKAKSTLVRNEETALIWKLVDEAE 112 (142)
T ss_dssp HHHHTCCCCCCCCSTTTHHHHHHHHHHH
T ss_pred HHHcCCccCCCCCCcccHHHHHHHHHHH
Confidence 99997732 2235777777776654
No 14
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.82 E-value=3.6e-20 Score=167.38 Aligned_cols=118 Identities=19% Similarity=0.147 Sum_probs=96.3
Q ss_pred CCeEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeChHHHHHH
Q 027994 70 CYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQ 149 (215)
Q Consensus 70 ~~~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~vi~~ 149 (215)
.+.+++||||||++|++.+|+|+++..+++. ....+..|||.||+.|++.||+. +.+++.|+|||++|+++
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-----~~~~~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~ 504 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDK-----VKKLEQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGI 504 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEE-----EEEESSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHH
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEe-----eccCCCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHH
Confidence 4679999999999999999999999765422 33456789999999999999986 66899999999999999
Q ss_pred HhcccccCChhHHHHHHHHHHHHhcCCceEEEEeCC----CCCHHHHHHHHHhh
Q 027994 150 IQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR----NLNSEADAQANMGI 199 (215)
Q Consensus 150 i~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~hv~r----~~N~~AD~LAk~a~ 199 (215)
+++ |+.. ....+++++.+++..+..+.+.||++ ++|+.||+||++|+
T Consensus 505 i~~-~~~~--~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 505 VAS-QPTE--SESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HHT-CCSE--ESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred Hhc-cccc--ccHHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 997 5432 33466667766666667788888875 67999999999874
No 15
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.81 E-value=6e-20 Score=135.43 Aligned_cols=99 Identities=27% Similarity=0.362 Sum_probs=79.1
Q ss_pred eEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeChHHHHHHHh
Q 027994 72 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQ 151 (215)
Q Consensus 72 ~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~vi~~i~ 151 (215)
...|||||||++||+++|+|+|+.+ +|..+... ..++..|||+|||.|++.||+++.+.+.+ +.|+|||++|++++.
T Consensus 5 ~~~iytDGac~GNPGp~G~ggV~~~-~g~~~~~~-g~~~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~ 81 (134)
T 4htu_A 5 WESLSVDVGSQGNPGIVEYKGVDTK-TGEVLFER-EPIPIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVK 81 (134)
T ss_dssp SSSEEEEEEEETTTEEEEEEEEETT-TCCEEEEE-EEEEEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHH
T ss_pred ceEEEEeeccCCCCCCeEEEEEEEE-CCEEEEEe-cCCCCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHH
Confidence 5689999999999999999888866 56544433 44668999999999999999999998865 899999999999998
Q ss_pred c-ccccC---ChhHHHHHHHHHHHHh
Q 027994 152 G-LWKIN---NQNLAGLCKEAKELKE 173 (215)
Q Consensus 152 ~-~~~~~---~~~~~~l~~~i~~l~~ 173 (215)
+ .|+.. ..++.+||+.+.++..
T Consensus 82 ~~~~kt~~~~~vkN~dLw~~ld~~~~ 107 (134)
T 4htu_A 82 DKKAKSTLVRNEETALIWKLVDEAEE 107 (134)
T ss_dssp HTCCCCCCCCSSTTHHHHHHHHHHHH
T ss_pred cCCcccCCCCCccCHHHHHHHHHHHH
Confidence 6 44432 2257777777775544
No 16
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.79 E-value=6.9e-20 Score=165.57 Aligned_cols=118 Identities=20% Similarity=0.138 Sum_probs=90.4
Q ss_pred CCCeEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeChHHHHH
Q 027994 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCM 148 (215)
Q Consensus 69 ~~~~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~vi~ 148 (215)
..+.+++|||||+++|++.+|+|+++.+.. .... ..+..|||+|||.|++.||+.+ .+++.|+|||++|++
T Consensus 436 ~~~~~~iytDGs~~~n~g~~g~g~v~~~~~-~~~~----~~~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~ 506 (557)
T 2zd1_A 436 IVGAETFYVDGAANRETKLGKAGYVTNKGR-QKVV----PLTNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALG 506 (557)
T ss_dssp CTTSCEEEEEEEECTTTCCEEEEEEETTSC-EEEE----EECSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHH
T ss_pred CCCCEEEEEccCCCCCCCceEEEEEEECCc-EEEe----cCCCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHH
Confidence 345799999999999999999999997432 2211 3467899999999999999987 589999999999999
Q ss_pred HHhcccccCChhHHHHHHHHHHHHhcCCceEEEEeCC----CCCHHHHHHHHHh
Q 027994 149 QIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR----NLNSEADAQANMG 198 (215)
Q Consensus 149 ~i~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~hv~r----~~N~~AD~LAk~a 198 (215)
++++ |... ....+++++.+.+.....+.+.||++ .+|+.||+||++|
T Consensus 507 ~i~~-~~~~--~~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 507 IIQA-QPDK--SESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHTT-CCSE--ESSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHhc-CCcc--CCHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 9997 4332 12355666654445556789998876 6799999999976
No 17
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=90.13 E-value=2.2 Score=36.70 Aligned_cols=83 Identities=8% Similarity=-0.092 Sum_probs=51.9
Q ss_pred CCCCCeEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeeec-cCcccchHHhHHH-HHHHHHHHHH--cCC--eeEEEE
Q 027994 67 PYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREG-VGIATNNVAEYRA-LILGLKYALQ--KGY--KHIRVQ 140 (215)
Q Consensus 67 ~~~~~~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~~-~~~~tn~~AEl~A-i~~aL~~a~~--~g~--~~v~I~ 140 (215)
+.+...+.++||+|-. +.+|+++...++......... ......+.-|+.| ++.||+.-.. .|- ..++++
T Consensus 319 pd~~~~~~l~~das~~-----g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~ 393 (428)
T 2zd1_B 319 YDPSKDLIAEIQKQGQ-----GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPI 393 (428)
T ss_dssp CCTTSCCEEEEEEEET-----TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESS
T ss_pred cCCCCCEEEEEecCCC-----CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCc
Confidence 3455679999999832 477888877766543221111 1234556677777 9999985443 242 567888
Q ss_pred eChHHHHHHHhcccc
Q 027994 141 GDSKLVCMQIQGLWK 155 (215)
Q Consensus 141 tDS~~vi~~i~~~~~ 155 (215)
||.+.+.- +...|+
T Consensus 394 td~~~~~~-~~~~~q 407 (428)
T 2zd1_B 394 QKETWETW-WTEYWQ 407 (428)
T ss_dssp CHHHHHHH-HHHHCC
T ss_pred cHHHHHHH-HHhccc
Confidence 99987654 333443
No 18
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=87.45 E-value=0.12 Score=44.96 Aligned_cols=76 Identities=14% Similarity=-0.031 Sum_probs=48.2
Q ss_pred CCeEEEEEcccccCCCCceEEEEEEEeC-C--CcEEEEeeeccC----cccchHHhHHHHHHHHHHHHHc-CCeeEEEEe
Q 027994 70 CYSCTLEFDGASKGNPGQAGAGAVLRAE-D--GSVVYRLREGVG----IATNNVAEYRALILGLKYALQK-GYKHIRVQG 141 (215)
Q Consensus 70 ~~~~~i~tDGS~~~~~~~~G~G~v~~~~-~--g~~~~~~~~~~~----~~tn~~AEl~Ai~~aL~~a~~~-g~~~v~I~t 141 (215)
...+.+|||+|-. |+|+|+... + +..+.-.+..+. ..+..+.|+.|++.|++..... --+++.|+|
T Consensus 344 ~~~~~l~~DAS~~------~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~t 417 (455)
T 1rw3_A 344 TKPFELFVDEKQG------YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKA 417 (455)
T ss_dssp CCTTSCEEEEEEC------SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEEC
T ss_pred CCcEEEEEeccCC------cceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 4568899999743 223344322 2 233433444432 3456789999999999877652 226899999
Q ss_pred ChHHHHHHHhc
Q 027994 142 DSKLVCMQIQG 152 (215)
Q Consensus 142 DS~~vi~~i~~ 152 (215)
|+. +...+.+
T Consensus 418 Dh~-~~~~l~~ 427 (455)
T 1rw3_A 418 PHA-VEALVKQ 427 (455)
T ss_dssp SSC-TTTTSSS
T ss_pred cCh-HHHHhCC
Confidence 997 6555553
No 19
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=75.40 E-value=18 Score=28.30 Aligned_cols=88 Identities=9% Similarity=0.058 Sum_probs=48.1
Q ss_pred EEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeChHHHHHHHhcccccCChhHHHHHHHHH
Q 027994 90 AGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAK 169 (215)
Q Consensus 90 ~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~vi~~i~~~~~~~~~~~~~l~~~i~ 169 (215)
+|+++ |+||.+- ....++...-..+-..++..-+++|.++|++.+++|.=| +..|+.....+..+..-+.
T Consensus 10 VAiIM-DGNrRwA--k~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFS-------tENw~Rp~~EV~~Lm~L~~ 79 (225)
T 3ugs_B 10 LAVVM-DGNRRWA--RAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFS-------TENWKRPKDEIDFIFELLD 79 (225)
T ss_dssp EEEEE-CCCC----------------CHHHHHHHHHHHHHHHTTCCEEEEEEEE-------SGGGGSCHHHHHHHHHHHH
T ss_pred EEEec-cCcHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc-------ccccCCCHHHHHHHHHHHH
Confidence 34433 6666543 223344455677888999999999999999999999766 2356544444443333332
Q ss_pred HHH----hc--CCceEEEEeCCCC
Q 027994 170 ELK----EK--FQSFQINHILRNL 187 (215)
Q Consensus 170 ~l~----~~--~~~~~~~hv~r~~ 187 (215)
+.+ .. -..+++.++++..
T Consensus 80 ~~l~~~~~~l~~~~vrvr~iGd~~ 103 (225)
T 3ugs_B 80 RCLDEALEKFEKNNVRLRAIGDLS 103 (225)
T ss_dssp HHHHHHHHHSTTTTEEEEEESCGG
T ss_pred HHHHHHHHHHHHCCcEEEEEeChH
Confidence 222 22 2368888887644
No 20
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=73.94 E-value=8.8 Score=27.48 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=37.6
Q ss_pred ceEEEEEEEeCCCcEEEEeeeccC-cccchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 87 QAGAGAVLRAEDGSVVYRLREGVG-IATNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 87 ~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
...+|++++..+|+++.+.-.... ......||..|+..|... -...++.+.+++|.
T Consensus 23 ~~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 23 KFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 356888999889987743222221 223568999999998863 23446788898874
No 21
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=72.52 E-value=7.9 Score=28.17 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=37.5
Q ss_pred ceEEEEEEEeCCCcEEEEeeeccC-cccchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 87 QAGAGAVLRAEDGSVVYRLREGVG-IATNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 87 ~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
...+|++++..+|+++.+.-.... ......||..|+..|... -...++.+.|++|.
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 356888888889987643222221 223568999999998863 23345688999884
No 22
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=72.20 E-value=8.3 Score=27.39 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=37.2
Q ss_pred ceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 87 QAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 87 ~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
...+|++++..+|+++...-.. .......||..|+..|... -...++.+.+++|.
T Consensus 26 ~f~VGAal~~~dG~i~~G~NvE-~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 26 DYSVASAALSSDGRIFTGVNVY-HFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp SSCEEEEEEETTSCEEEEECCC-CTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCCEEEEEEecCCeEEEEeccc-cCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 3568888888899877533222 2233678999999998862 12345678888874
No 23
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=65.84 E-value=4.2 Score=32.60 Aligned_cols=34 Identities=12% Similarity=-0.015 Sum_probs=29.7
Q ss_pred CcccchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 110 GIATNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 110 ~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
+...-..+-..++...+++|.++|++.+++|..|
T Consensus 45 ~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFS 78 (256)
T 4h8e_A 45 PRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFS 78 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 4455678889999999999999999999999987
No 24
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=64.03 E-value=24 Score=31.23 Aligned_cols=79 Identities=6% Similarity=-0.136 Sum_probs=46.6
Q ss_pred CCCCCCeEEEEEcccccCCCCceEEEEEEEeCCCcEEEEeee-ccCcccchHHhHHH-HHHHHHHHHH--cCCe-eEEE-
Q 027994 66 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE-GVGIATNNVAEYRA-LILGLKYALQ--KGYK-HIRV- 139 (215)
Q Consensus 66 ~~~~~~~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~~~~~-~~~~~tn~~AEl~A-i~~aL~~a~~--~g~~-~v~I- 139 (215)
.+.+...+.+++|+|-. +.+|+++....+........ .......+.-|+.| ++.+|+.-.. .|.. ++.+
T Consensus 320 ~pd~~~~~~l~~das~~-----g~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g~~p~~~vp 394 (557)
T 2zd1_A 320 YYDPSKDLIAEIQKQGQ-----GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLP 394 (557)
T ss_dssp CCCTTSCCEEEEEEEET-----TEEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHHHSSCCEEEES
T ss_pred ecCCCCCEEEEEecCCC-----CcEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEEeCCCCCEECC
Confidence 33455679999999742 45688877755543321111 11234556678888 8888875332 2322 4455
Q ss_pred EeChHHHHHH
Q 027994 140 QGDSKLVCMQ 149 (215)
Q Consensus 140 ~tDS~~vi~~ 149 (215)
++|++.+...
T Consensus 395 ~~~~~~~~~~ 404 (557)
T 2zd1_A 395 IQKETWETWW 404 (557)
T ss_dssp BCHHHHHHHH
T ss_pred CcHHHHHHHh
Confidence 7888765544
No 25
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=63.38 E-value=40 Score=27.03 Aligned_cols=75 Identities=20% Similarity=0.153 Sum_probs=39.1
Q ss_pred CCCeEEEEEcccccCCCC--ceEEEEEEEeCCCcEEEEeeec----c-CcccchHHhHHHHHHHHHHHHHcCCe--eEEE
Q 027994 69 NCYSCTLEFDGASKGNPG--QAGAGAVLRAEDGSVVYRLREG----V-GIATNNVAEYRALILGLKYALQKGYK--HIRV 139 (215)
Q Consensus 69 ~~~~~~i~tDGS~~~~~~--~~G~G~v~~~~~g~~~~~~~~~----~-~~~tn~~AEl~Ai~~aL~~a~~~g~~--~v~I 139 (215)
-...+.||+|=+|-.|.. +.|+++|.+..+.-++.+..-. + +......||-.+-+.+-=+++.--++ +|.|
T Consensus 59 L~~tLYVYIDPAfT~N~~ASGTGIaavg~~~~~~Ii~GlEHfFL~~LTg~s~~~Ia~Ca~~~i~~vl~lHp~~~~vrvaV 138 (279)
T 3n4p_A 59 FGKTLYVYLDPAFTTNRKASGTGVAAVGAYRHQFLIYGLEHFFLRDLSESSEVAIAECAAHMIISVLSLHPYLDELRIAV 138 (279)
T ss_dssp BCCEEEEEEECC--------CEEEEEEEEETTEEEEEEEEEECC---CCCHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred cCCeEEEEECCccccCCccccccEEEEEEecCcEEEEecHHHhHHHhcCchHHHHHHHHHHHHHHHHHhCcccceEEEEE
Confidence 356899999999987774 4566677766654444443222 2 34445566655544332223322333 6788
Q ss_pred EeCh
Q 027994 140 QGDS 143 (215)
Q Consensus 140 ~tDS 143 (215)
++.|
T Consensus 139 EGNS 142 (279)
T 3n4p_A 139 EGNT 142 (279)
T ss_dssp BCSS
T ss_pred ecCc
Confidence 8876
No 26
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=56.33 E-value=20 Score=25.75 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=37.6
Q ss_pred ceEEEEEEEeCCCcEEEEeeecc-CcccchHHhHHHHHHHHHHHHHcC-CeeEEEEeCh
Q 027994 87 QAGAGAVLRAEDGSVVYRLREGV-GIATNNVAEYRALILGLKYALQKG-YKHIRVQGDS 143 (215)
Q Consensus 87 ~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~AEl~Ai~~aL~~a~~~g-~~~v~I~tDS 143 (215)
....|++++..+|.++.+.-... .......||-.|+..+...- ... ++.+.|.+|.
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G-~~~~i~~i~vv~~~ 88 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAG-HRSGWKCMVICGDS 88 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCSCCCEEEEEESC
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcC-CCCceEEEEEEeCC
Confidence 35688889999998765332222 12345789999999887531 223 7788999875
No 27
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=54.81 E-value=28 Score=25.02 Aligned_cols=56 Identities=25% Similarity=0.236 Sum_probs=37.8
Q ss_pred ceEEEEEEEeCCCcEEEEeeecc-CcccchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 87 QAGAGAVLRAEDGSVVYRLREGV-GIATNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 87 ~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
...+|++++..+|.++...-... .......||-.|+..|... -...++.|.|.+|.
T Consensus 32 ~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~ 88 (141)
T 2d30_A 32 KFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADT 88 (141)
T ss_dssp CCCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCC
Confidence 35688889999998764433222 1234578999999988752 12345688888885
No 28
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=49.52 E-value=50 Score=25.49 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=33.6
Q ss_pred CceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcC
Q 027994 86 GQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133 (215)
Q Consensus 86 ~~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g 133 (215)
+...-|.++.|++|.+........ ....+..|++-++.|||++.+.|
T Consensus 144 g~~~R~tFiIDp~g~Ir~~~~~~~-~~gr~~~EvLr~l~aLQ~~~~~~ 190 (219)
T 3tue_A 144 GVAYRGLFIIDPHGMLRQITVNDM-PVGRSVEEVLRLLEAFQFVEKHG 190 (219)
T ss_dssp TEECEEEEEECTTSBEEEEEEECT-TCCCCHHHHHHHHHHHHHHHHC-
T ss_pred CeeEEEEEEECCCCeEEEEEEecC-CCCCCHHHHHHHHHHhhhHHhcC
Confidence 344568889999998765433333 34557889999999999988776
No 29
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=46.50 E-value=57 Score=25.13 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=34.3
Q ss_pred CceEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcC
Q 027994 86 GQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133 (215)
Q Consensus 86 ~~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g 133 (215)
+.+--|.++.|++|.+.+...... ....+..|++-++.|||+..+.|
T Consensus 140 g~~~R~tFiID~~G~Ir~~~v~~~-~~grn~dEiLr~l~AlQ~~~~~~ 186 (216)
T 3sbc_A 140 GVALRGLFIIDPKGVIRHITINDL-PVGRNVDEALRLVEAFQWTDKNG 186 (216)
T ss_dssp TEECEEEEEECTTSBEEEEEEECT-TBCCCHHHHHHHHHHHHHHHHHC
T ss_pred CceeeEEEEECCCCeEEEEEEcCC-CCCCCHHHHHHHHHHhhhHhhcC
Confidence 334567889999998765433333 34558899999999999988765
No 30
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=45.59 E-value=8.8 Score=28.42 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.3
Q ss_pred cccchHHhHHHHHHHHHHHHHc
Q 027994 111 IATNNVAEYRALILGLKYALQK 132 (215)
Q Consensus 111 ~~tn~~AEl~Ai~~aL~~a~~~ 132 (215)
..+++++|++|.+.||..+++.
T Consensus 49 ~~tnn~te~~Aei~Al~~al~~ 70 (165)
T 2lsn_A 49 IPLGNHTAQMAEIAAVEFACKK 70 (165)
T ss_dssp EEESSCCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999988864
No 31
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=44.81 E-value=81 Score=24.48 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=42.7
Q ss_pred cchHHhHHHHHHHHHHHHHcCCeeEEEEeChHHHHHHHhcccccCChhHHHHHHHHHHHHhc----CCceEEEEeCC
Q 027994 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEK----FQSFQINHILR 185 (215)
Q Consensus 113 tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS~~vi~~i~~~~~~~~~~~~~l~~~i~~l~~~----~~~~~~~hv~r 185 (215)
.-..+-+.++..-++++.+.|++.+++|.=| +..|+........+.+.+...+.. -..+++.++++
T Consensus 27 ~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFS-------teN~kRp~~Ev~~Lm~l~~~~l~~~~~~~~~vrv~~iG~ 96 (227)
T 2vg0_A 27 YGYRMGAAKIAEMLRWCHEAGIELATVYLLS-------TENLQRDPDELAALIEIITDVVEEICAPANHWSVRTVGD 96 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEEEEEEEE-------TGGGGSCHHHHHHHHHHHHHHHHHHTCTTTCCEEEEESC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeec-------ccccCCCHHHHHHHHHHHHHHHHHHhccccCeEEEecCC
Confidence 3445678899999999999999999999865 345554443433333333332221 24577888775
No 32
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=44.64 E-value=37 Score=24.73 Aligned_cols=55 Identities=15% Similarity=-0.030 Sum_probs=36.7
Q ss_pred eEEEEEEEeCCCcEEEEeeeccC-cccchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 88 AGAGAVLRAEDGSVVYRLREGVG-IATNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 88 ~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
..+|+.++..+|+++...-.... ......||-.|+..|+.. -+..++.|.|.+|.
T Consensus 46 F~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~i~aiavv~~~ 101 (150)
T 3mpz_A 46 FPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSG-GGGRLVALSCVGPD 101 (150)
T ss_dssp CCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEECTT
T ss_pred CCEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHc-CCCceEEEEEEcCC
Confidence 56788888999988754433322 234678999999998752 12345677787764
No 33
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=42.30 E-value=42 Score=23.98 Aligned_cols=55 Identities=9% Similarity=-0.022 Sum_probs=35.5
Q ss_pred eEEEEEEEeCCCcEEEEeeeccC-cccchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 88 AGAGAVLRAEDGSVVYRLREGVG-IATNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 88 ~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
..+|++++..+|+++...-.... ......||-.|+..|...- ...++.+.|.+|.
T Consensus 31 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~~ 86 (138)
T 3r2n_A 31 FPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDGN 86 (138)
T ss_dssp CCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred CcEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 46678888899987644333222 2346689999999987521 2345567777663
No 34
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=38.55 E-value=68 Score=22.92 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=38.4
Q ss_pred ceEEEEEEEeCCCcEEEEeeeccC-cccchHHhHHHHHHHHHHHHHc--CCeeEEEEeCh
Q 027994 87 QAGAGAVLRAEDGSVVYRLREGVG-IATNNVAEYRALILGLKYALQK--GYKHIRVQGDS 143 (215)
Q Consensus 87 ~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~AEl~Ai~~aL~~a~~~--g~~~v~I~tDS 143 (215)
....|+.++..+|+++...-.... ......||-.|+..++..- .. .++.+.|.+|.
T Consensus 31 ~F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G-~~~~~i~aiavv~~~ 89 (138)
T 3dmo_A 31 NFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAG-YRPGEFAAIAVVGET 89 (138)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCTTCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcC-CCcccEEEEEEEcCC
Confidence 467889999999998755433332 2345789999999987421 12 45678888886
No 35
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=38.39 E-value=46 Score=24.84 Aligned_cols=53 Identities=15% Similarity=-0.031 Sum_probs=27.5
Q ss_pred EEEEEEEeCCCcEEEEeee-ccC-cccchHHhHHHHHHHHHHHHHcCCeeEEEEeC
Q 027994 89 GAGAVLRAEDGSVVYRLRE-GVG-IATNNVAEYRALILGLKYALQKGYKHIRVQGD 142 (215)
Q Consensus 89 G~G~v~~~~~g~~~~~~~~-~~~-~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tD 142 (215)
.+|+|+.+ +|+++....- ... ......||..||..|.+..-....+..++|+-
T Consensus 37 pVGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYvT 91 (179)
T 2nx8_A 37 PIGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVT 91 (179)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred CEEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEEC
Confidence 45666665 6666532221 111 12246799999998876432222334444443
No 36
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=37.20 E-value=50 Score=23.98 Aligned_cols=54 Identities=17% Similarity=0.004 Sum_probs=29.1
Q ss_pred eEEEEEEEeCCCcEEEEeeecc--CcccchHHhHHHHHHHHHHHHHcCCeeEEEEeC
Q 027994 88 AGAGAVLRAEDGSVVYRLREGV--GIATNNVAEYRALILGLKYALQKGYKHIRVQGD 142 (215)
Q Consensus 88 ~G~G~v~~~~~g~~~~~~~~~~--~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tD 142 (215)
..+|+|+.+ +|+++....-.. .......||..||..+.+..-...++..++|+.
T Consensus 27 ~pVGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyvT 82 (159)
T 2b3j_A 27 VPIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVT 82 (159)
T ss_dssp CCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred CCEEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEEC
Confidence 345666665 666653221111 112346899999998876432233445566643
No 37
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=36.99 E-value=70 Score=24.15 Aligned_cols=39 Identities=26% Similarity=0.185 Sum_probs=25.2
Q ss_pred EEEEEEeCC-CcEEEEeeecc--CcccchHHhHHHHHHHHHH
Q 027994 90 AGAVLRAED-GSVVYRLREGV--GIATNNVAEYRALILGLKY 128 (215)
Q Consensus 90 ~G~v~~~~~-g~~~~~~~~~~--~~~tn~~AEl~Ai~~aL~~ 128 (215)
+|+|+.+.+ |+++....-.. .......||..||..|-+.
T Consensus 50 vGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~ 91 (197)
T 2g84_A 50 FAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAK 91 (197)
T ss_dssp CEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHH
Confidence 478888766 87764332222 1233568999999988764
No 38
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=36.85 E-value=21 Score=28.46 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=28.5
Q ss_pred CcccchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 110 GIATNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 110 ~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
+...-..+-..++..-+++|.++|++.+++|.=|
T Consensus 38 ~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFS 71 (253)
T 3sgv_B 38 IRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 4455678889999999999999999999999755
No 39
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=35.36 E-value=54 Score=24.25 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=29.8
Q ss_pred eEEEEEEEeCCCcEEEEee-eccC-cccchHHhHHHHHHHHHHHHHcCCeeEEEEeC
Q 027994 88 AGAGAVLRAEDGSVVYRLR-EGVG-IATNNVAEYRALILGLKYALQKGYKHIRVQGD 142 (215)
Q Consensus 88 ~G~G~v~~~~~g~~~~~~~-~~~~-~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tD 142 (215)
..+|+|+.+ +|+++.... .... ......||..|+..|.+..-...++..++|+-
T Consensus 43 ~pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYvT 98 (171)
T 1wwr_A 43 VPVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVT 98 (171)
T ss_dssp CCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEES
T ss_pred CCEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEEC
Confidence 345666666 666653211 1111 12245799999998876432233456677754
No 40
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=35.12 E-value=51 Score=24.82 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=23.4
Q ss_pred EEEEEEEeCCCcEEEEeeecc--CcccchHHhHHHHHHHHHHH
Q 027994 89 GAGAVLRAEDGSVVYRLREGV--GIATNNVAEYRALILGLKYA 129 (215)
Q Consensus 89 G~G~v~~~~~g~~~~~~~~~~--~~~tn~~AEl~Ai~~aL~~a 129 (215)
-+|+|+.+ +|+++....-.. .......||..||..+.+.+
T Consensus 47 pVGAVIV~-~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 47 PVGCLMVY-NNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 88 (189)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CEEEEEEE-CCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHH
Confidence 35556655 566654322211 12334579999999987754
No 41
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=35.11 E-value=47 Score=23.60 Aligned_cols=53 Identities=21% Similarity=0.109 Sum_probs=28.5
Q ss_pred eEEEEEEEeCCCcEEEEeee-ccC-cccchHHhHHHHHHHHHHHHHcCCeeEEEEe
Q 027994 88 AGAGAVLRAEDGSVVYRLRE-GVG-IATNNVAEYRALILGLKYALQKGYKHIRVQG 141 (215)
Q Consensus 88 ~G~G~v~~~~~g~~~~~~~~-~~~-~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~t 141 (215)
..+|+++.+ +|+++....- ... ......||..|+..+.+..-...++..++|+
T Consensus 24 ~~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 24 VPIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp CCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CCEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 345666666 6766532211 111 2224679999999987632222234455554
No 42
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=32.48 E-value=53 Score=28.89 Aligned_cols=53 Identities=8% Similarity=0.017 Sum_probs=28.4
Q ss_pred CCCeEEEEEcccccCCCCceEEEEEEEeCCCcEEE--EeeeccCcccchHHhHHH-HHHHHHH
Q 027994 69 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVY--RLREGVGIATNNVAEYRA-LILGLKY 128 (215)
Q Consensus 69 ~~~~~~i~tDGS~~~~~~~~G~G~v~~~~~g~~~~--~~~~~~~~~tn~~AEl~A-i~~aL~~ 128 (215)
+...+.+++|+|- .+++|+++... |..+. .++......++.. |+.| ++.+|+.
T Consensus 321 ~~~~~~l~~das~-----~ga~g~vl~Q~-~~~~~~~~~s~~~~~~~~~~-~~la~~v~~l~~ 376 (555)
T 1mu2_A 321 EEKELEATVQKDQ-----DNQWTYKIHQE-EKILKVGKYAKVKNTHTNGI-RLLAQVVQKIGK 376 (555)
T ss_dssp TTSCCEEEEEECS-----SSCEEEEEEET-TEEEEEEEECCC--CEECHH-HHHHHHHHHHHH
T ss_pred CCCCEEEEEecCC-----CCcEEEEEeeC-CcceeeeeccccccccCCHH-HHHHHHHHHhch
Confidence 4457899999973 23588888774 43331 2232222333333 4433 6666654
No 43
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=29.80 E-value=61 Score=23.78 Aligned_cols=52 Identities=19% Similarity=0.116 Sum_probs=27.5
Q ss_pred EEEEEEeCCCcEEEEeeecc-C-cccchHHhHHHHHHHHHHHHHcCCeeEEEEeC
Q 027994 90 AGAVLRAEDGSVVYRLREGV-G-IATNNVAEYRALILGLKYALQKGYKHIRVQGD 142 (215)
Q Consensus 90 ~G~v~~~~~g~~~~~~~~~~-~-~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tD 142 (215)
+|+|+.. +|+++....-.. . ......||..||..+.+..-....+..++|+-
T Consensus 34 VGAVIV~-~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT 87 (164)
T 1wkq_A 34 FGAVIVK-DGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTS 87 (164)
T ss_dssp CEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEE
T ss_pred EEEEEEE-CCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEEe
Confidence 5656654 666653222111 1 12246799999998876432223344555554
No 44
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=28.47 E-value=1.8e+02 Score=23.43 Aligned_cols=31 Identities=16% Similarity=-0.015 Sum_probs=26.3
Q ss_pred cchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 113 tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
.-..+-+.++..-++++.+.|++.+++|.=|
T Consensus 79 ~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFS 109 (284)
T 2vg3_A 79 EGHKMGEAVVIDIACGAIELGIKWLSLYAFS 109 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 3456677899999999999999999999865
No 45
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=28.15 E-value=84 Score=22.07 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=22.4
Q ss_pred EEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHH
Q 027994 91 GAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGL 126 (215)
Q Consensus 91 G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL 126 (215)
+.++.|.+|.+.+...........+..|+.+++.+|
T Consensus 121 ~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 121 AVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp EEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred eEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 356789999887655444333334456777666654
No 46
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=27.91 E-value=1.1e+02 Score=21.63 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=34.0
Q ss_pred EEEEEEEeCCCcEEEEeeeccC-cccchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 89 GAGAVLRAEDGSVVYRLREGVG-IATNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 89 G~G~v~~~~~g~~~~~~~~~~~-~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
.+|++++..+|+++.+.-.... ......||-.|+..+... -...++.+.+.+|.
T Consensus 24 ~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~-G~~~~~~~~v~~~~ 78 (142)
T 3b8f_A 24 GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKF-QKKVTHSICLAREN 78 (142)
T ss_dssp EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHH-TCCEEEEEEEEESS
T ss_pred CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHC-CCCcEEEEEEEecC
Confidence 7888888899987643322221 234578999999998862 11123456777654
No 47
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=27.62 E-value=1.4e+02 Score=22.42 Aligned_cols=42 Identities=7% Similarity=0.023 Sum_probs=30.7
Q ss_pred EEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcC
Q 027994 91 GAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133 (215)
Q Consensus 91 G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g 133 (215)
+.++.|++|.+......... ...+..|++.++.+|+...+.+
T Consensus 130 ~~flID~~G~I~~~~~~~~~-~g~~~~ell~~i~~lq~~~~~~ 171 (220)
T 1xcc_A 130 CLFFISPEKKIKATVLYPAT-TGRNAHEILRVLKSLQLTYTTP 171 (220)
T ss_dssp EEEEECTTSBEEEEEEECTT-BCCCHHHHHHHHHHHHHHHHSS
T ss_pred eEEEECCCCEEEEEEecCCC-CCCCHHHHHHHHHHHHhhhcCC
Confidence 67788999988766554432 2246789999999999877654
No 48
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=26.41 E-value=1.4e+02 Score=23.22 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=30.5
Q ss_pred EEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcC
Q 027994 91 GAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133 (215)
Q Consensus 91 G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g 133 (215)
+.++.|++|.+......... ...+..|+..++.+|+...+.+
T Consensus 126 ~~fIID~dG~I~~~~~~~~~-~gr~~~Ellr~I~alq~~~~~~ 167 (249)
T 3a2v_A 126 GVFIVDARGVIRTMLYYPME-LGRLVDEILRIVKALKLGDSLK 167 (249)
T ss_dssp EEEEECTTSBEEEEEEECTT-BCCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCeEEEEEecCCc-ccchhHHHHHHHHHHHhccccC
Confidence 67788999988765544432 2346789999999999776544
No 49
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=24.74 E-value=75 Score=23.30 Aligned_cols=39 Identities=28% Similarity=0.179 Sum_probs=22.3
Q ss_pred EEEEEEEeCCCcEEEEee-eccC-cccchHHhHHHHHHHHHH
Q 027994 89 GAGAVLRAEDGSVVYRLR-EGVG-IATNNVAEYRALILGLKY 128 (215)
Q Consensus 89 G~G~v~~~~~g~~~~~~~-~~~~-~~tn~~AEl~Ai~~aL~~ 128 (215)
.+|+|+.+ +|+++.... .... ......||..||..+.+.
T Consensus 30 pVGAviV~-~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~ 70 (168)
T 1z3a_A 30 PVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLV 70 (168)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHH
T ss_pred cEEEEEEE-CCEEEEEEEcccccCCCcchhHHHHHHHHHHHH
Confidence 35666664 666653221 1111 122467999999988764
No 50
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=24.35 E-value=1.8e+02 Score=22.27 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=30.2
Q ss_pred EEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcC
Q 027994 91 GAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133 (215)
Q Consensus 91 G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g 133 (215)
+.++.|++|.+......... ...+..|++.++.+|+...+.+
T Consensus 129 ~~fiID~~G~I~~~~~~~~~-~gr~~~eilr~l~~Lq~~~~~~ 170 (233)
T 2v2g_A 129 AVFIIGPDKKLKLSILYPAT-TGRNFSEILRVIDSLQLTAQKK 170 (233)
T ss_dssp EEEEECTTSBEEEEEEECTT-BCCCHHHHHHHHHHHHHHHHSS
T ss_pred eEEEECCCCEEEEEEecCCC-CCCCHHHHHHHHHHHHhhccCC
Confidence 67788999988766544432 2236789999999999876543
No 51
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=24.00 E-value=1.4e+02 Score=21.71 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=33.5
Q ss_pred eEEEEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcCCeeEEEEeC
Q 027994 88 AGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGD 142 (215)
Q Consensus 88 ~G~G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tD 142 (215)
...|+.++..+|+++...-... ......||-.|+..|+.. -...+..+.+.++
T Consensus 51 f~VGAAll~~dG~i~tG~NVEn-~~~~lCAEr~Ai~~Avs~-G~~~~~ai~vv~~ 103 (158)
T 3oj6_A 51 YSVASAAISDDGRVFSGVNVYH-FNGGPCAELVVLGVAAAA-GATKLTHIVAIAN 103 (158)
T ss_dssp SCEEEEEEETTSCEEEEECCCC-TTTCCCHHHHHHHHHHHT-TCCCEEEEEEEET
T ss_pred CcEEEEEEeCCCCEEEEEcccc-CCccccHHHHHHHHHHHh-CCCceEEEEEEeC
Confidence 4678888899998875543322 223468999999888741 1123345566665
No 52
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=23.38 E-value=98 Score=18.46 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHcC
Q 027994 118 EYRALILGLKYALQKG 133 (215)
Q Consensus 118 El~Ai~~aL~~a~~~g 133 (215)
...|++.||..|.+.|
T Consensus 9 q~~aILkaLdeaIe~G 24 (57)
T 3fxd_A 9 QKETILKALNDAIEKG 24 (57)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4678999999888766
No 53
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=23.27 E-value=2.6e+02 Score=21.86 Aligned_cols=31 Identities=6% Similarity=-0.068 Sum_probs=25.8
Q ss_pred cchHHhHHHHHHHHHHHHHcCCeeEEEEeCh
Q 027994 113 TNNVAEYRALILGLKYALQKGYKHIRVQGDS 143 (215)
Q Consensus 113 tn~~AEl~Ai~~aL~~a~~~g~~~v~I~tDS 143 (215)
.-..+-+.++..-++++.+.|++.+++|.=|
T Consensus 39 ~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFS 69 (245)
T 2d2r_A 39 YGHKKGVKTLKDITIWCANHKLECLTLYAFS 69 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSEEEEECC-
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 3455678899999999999999999999865
No 54
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=22.91 E-value=1.1e+02 Score=24.69 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=39.4
Q ss_pred ceEEEEEEEeCCCcEEEEeeecc-CcccchHHhHHHHHHHHHHHH-HcCCeeEEEEeChH
Q 027994 87 QAGAGAVLRAEDGSVVYRLREGV-GIATNNVAEYRALILGLKYAL-QKGYKHIRVQGDSK 144 (215)
Q Consensus 87 ~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~AEl~Ai~~aL~~a~-~~g~~~v~I~tDS~ 144 (215)
....|+.+...+|.++.+.-... .......||-.|+..+...-. ...++.+.+.+|..
T Consensus 208 ~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~~ 267 (294)
T 1ctt_A 208 KSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKAD 267 (294)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECTT
T ss_pred CCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecCC
Confidence 46789999999998765433332 234567899999998875211 12366889998863
No 55
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=22.63 E-value=1.8e+02 Score=21.99 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=29.9
Q ss_pred EEEEEeCCCcEEEEeeeccCcccchHHhHHHHHHHHHHHHHcC
Q 027994 91 GAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 133 (215)
Q Consensus 91 G~v~~~~~g~~~~~~~~~~~~~tn~~AEl~Ai~~aL~~a~~~g 133 (215)
+.++.|++|.+......... ...+..|++..+.+|+...+.+
T Consensus 133 ~~fiID~~G~I~~~~~~~~~-~gr~~~eil~~i~~l~~~~~~~ 174 (224)
T 1prx_A 133 VVFVFGPDKKLKLSILYPAT-TGRNFDEILRVVISLQLTAEKR 174 (224)
T ss_dssp EEEEECTTSBEEEEEECCTT-BCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCEEEEEEecCCC-CCCCHHHHHHHHHHHHhhccCC
Confidence 67788999988765554332 2235789999999999776543
No 56
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.47 E-value=2.4e+02 Score=20.04 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=38.9
Q ss_pred eEEEEEcccccCCCCceEEEEEEEeCCC-cEEEEeeecc-C----cccchHHhHHHHHHHHHHHHHcCCeeEEEEe
Q 027994 72 SCTLEFDGASKGNPGQAGAGAVLRAEDG-SVVYRLREGV-G----IATNNVAEYRALILGLKYALQKGYKHIRVQG 141 (215)
Q Consensus 72 ~~~i~tDGS~~~~~~~~G~G~v~~~~~g-~~~~~~~~~~-~----~~tn~~AEl~Ai~~aL~~a~~~g~~~v~I~t 141 (215)
.=.+++=.|+. |+ =+-+.|..| +.+...+... + .-+...|-..|...+.+.+.++|++.|.|+-
T Consensus 14 ~gi~hI~asfN-NT-----ivtiTD~~G~~~i~~~S~G~~gfkg~~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~v 83 (137)
T 3j20_M 14 WGIAHIYSSFN-NT-----IIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRV 83 (137)
T ss_dssp EEEEEEEECSS-CE-----EEEEEESSSCSEEEEEEGGGTCSCTTTSSSHHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred ceEEEEEcCCC-CE-----EEEEEcCCCCEEEEEEccceeeecCCccCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 44566666664 21 244667888 4776655543 2 1233344455556777788899999887764
Done!