Query 027998
Match_columns 215
No_of_seqs 223 out of 929
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 07:02:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027998.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027998hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2akja1 d.58.36.1 (A:346-430) 59.7 7.8 0.00057 25.9 5.1 48 39-97 11-59 (85)
2 d1zj8a1 d.58.36.1 (A:327-406) 40.8 16 0.0011 23.7 4.1 40 47-97 16-55 (80)
3 d1n8fa_ c.1.10.4 (A:) 3-deoxy- 29.9 89 0.0065 26.1 8.1 48 38-92 213-260 (343)
4 d2v4jb2 d.58.36.2 (B:2-135) Di 24.6 51 0.0037 24.0 4.9 41 36-79 49-89 (134)
5 d1of8a_ c.1.10.4 (A:) 3-deoxy- 24.4 76 0.0055 26.6 6.6 34 39-74 214-247 (346)
6 d1xsza2 d.129.9.1 (A:198-354) 23.8 27 0.0019 26.0 3.1 26 47-79 95-120 (157)
7 d1js3a_ c.67.1.6 (A:) DOPA dec 23.4 11 0.0008 32.4 0.9 21 27-47 256-276 (476)
8 d1mwwa_ d.80.1.4 (A:) Hypothet 18.8 43 0.0031 22.9 3.3 36 17-52 67-112 (120)
9 d1pvva2 c.78.1.1 (A:151-313) O 17.7 93 0.0068 22.1 5.2 47 46-95 28-81 (163)
10 d1dxha2 c.78.1.1 (A:151-335) O 17.1 61 0.0045 23.8 4.0 66 15-94 8-82 (185)
No 1
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=59.66 E-value=7.8 Score=25.94 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=35.2
Q ss_pred EEecCCCCc-EEEEEeCCCCCCCCCCHHHHHHHHHHHHHhcccccCCCceEEEEEeccce
Q 027998 39 FHVDKMSSA-HVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANL 97 (215)
Q Consensus 39 FHv~~~pGa-HViLR~~~g~~~~~ipe~~L~~AAqLaa~~S~kg~k~~~V~V~YT~~knv 97 (215)
+|...-+|- .|-+|.+.| .++.+.+...|.||..|+. | .|..|.+.||
T Consensus 11 v~~Qk~~g~~~vri~~p~G----~lt~~ql~~la~ia~~yg~-g------~irlTtrQni 59 (85)
T d2akja1 11 VHPQKQQGLSFVGLHIPVG----RLQADEMEELARIADVYGS-G------ELRLTVEQNI 59 (85)
T ss_dssp EEECSSTTEEEEEECCGGG----EECHHHHHHHHHHHHHHSS-S------EEEEETTTEE
T ss_pred EeecCCCCeEEEEEEcCCc----EeCHHHHHHHHHHHHHHCC-C------cEEECCCCcE
Confidence 577777775 467777777 6999999999999999983 3 2445555544
No 2
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=40.82 E-value=16 Score=23.70 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=29.9
Q ss_pred cEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhcccccCCCceEEEEEeccce
Q 027998 47 AHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYTPWANL 97 (215)
Q Consensus 47 aHViLR~~~g~~~~~ipe~~L~~AAqLaa~~S~kg~k~~~V~V~YT~~knv 97 (215)
-.|-++.+.| .++.+.+...|.||..|+. + .|..|++.||
T Consensus 16 ~~vri~~p~G----~it~~ql~~la~ia~~yg~-g------~i~lTtrq~l 55 (80)
T d1zj8a1 16 NAVGVAPIAG----RVSGTILTAVADLMARAGS-D------RIRFTPYQKL 55 (80)
T ss_dssp EEEEEBCBTT----EEEHHHHHHHHHHHHHHTC-C------CEEECTTSCE
T ss_pred EEEEEeccCc----EECHHHHHHHHHHHHHhCC-C------eEEECCCCcE
Confidence 4577777777 6899999999999999983 3 3445666554
No 3
>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562]}
Probab=29.88 E-value=89 Score=26.09 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=34.1
Q ss_pred EEEecCCCCcEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhcccccCCCceEEEEE
Q 027998 38 WFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQGNKVNNIDVVYT 92 (215)
Q Consensus 38 WFHv~~~pGaHViLR~~~g~~~~~ipe~~L~~AAqLaa~~S~kg~k~~~V~V~YT 92 (215)
.++..+-|-+|||||...+ .+...+.+.+|..+..... -...|-|+..
T Consensus 213 iv~T~GN~~~HiILRGG~~---PNY~~~~V~~a~~~L~~~~----l~~~imVDcS 260 (343)
T d1n8fa_ 213 IVNTSGNGDCHIILRGGKE---PNYSAKHVAEVKEGLNKAG----LPAQVMIDFS 260 (343)
T ss_dssp EEEECCCSCEEEEECCSSS---CCCSHHHHHHHHHHHHHTT----CCCCEEEECS
T ss_pred eeeccCCCceeEEEEcCCC---CCCCHHHHHHHHHHHHHCC----CCHHHhhhcc
Confidence 3888899999999996432 4788899988887776433 2345655543
No 4
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=24.62 E-value=51 Score=24.04 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=30.4
Q ss_pred cEEEEecCCCCcEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhcc
Q 027998 36 DIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSI 79 (215)
Q Consensus 36 DlWFHv~~~pGaHViLR~~~g~~~~~ipe~~L~~AAqLaa~~S~ 79 (215)
-++.|+..-.-.-.-+|...+. -++.+.|...|.||-.|+.
T Consensus 49 Gvl~hv~esGd~~~tVRv~~~R---llS~~~lR~iadIAdkYg~ 89 (134)
T d2v4jb2 49 GVLMHVAESGDKVYTVRVGAAR---LMSITHIREMCDIADKYCG 89 (134)
T ss_dssp TEEEEEETTSCEEEEEEECCCS---EEEHHHHHHHHHHHHHHST
T ss_pred cEEEEecCCCCEEEEEECCCCc---ccCHHHHHHHHHHHHHHCC
Confidence 5788888755445567776431 2588999999999999993
No 5
>d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]}
Probab=24.38 E-value=76 Score=26.59 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=25.7
Q ss_pred EEecCCCCcEEEEEeCCCCCCCCCCHHHHHHHHHHH
Q 027998 39 FHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLV 74 (215)
Q Consensus 39 FHv~~~pGaHViLR~~~g~~~~~ipe~~L~~AAqLa 74 (215)
++..+-|-+|||||... +..+.+.+.+..|..+.
T Consensus 214 v~T~GN~~~HiILRGG~--~gpNyd~~~v~~a~~~l 247 (346)
T d1of8a_ 214 TTTKGNEHCFVILRGGK--KGTNYDAKSVAEAKAQL 247 (346)
T ss_dssp EEECCCSCEEEEECCCT--TCCCCSHHHHHHHHHHC
T ss_pred EEeCCCCcceEEEEccC--CCCCcCHHHHHHHHHHh
Confidence 88999999999999742 23467788887776643
No 6
>d1xsza2 d.129.9.1 (A:198-354) RalF, C-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=23.81 E-value=27 Score=25.95 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhcc
Q 027998 47 AHVYLRLHKGQTIDDISEGVLEDCAQLVKANSI 79 (215)
Q Consensus 47 aHViLR~~~g~~~~~ipe~~L~~AAqLaa~~S~ 79 (215)
|.|||.. |+ +++.|..|||+||.||.
T Consensus 95 skiiIQP--g~-----seqSl~LAaqiaA~Fet 120 (157)
T d1xsza2 95 PRVIIQP--GQ-----TKESIDLAAKAAADFSS 120 (157)
T ss_dssp CEEEEEE--CS-----STTHHHHHHHHHHTSSS
T ss_pred CeEEecC--CC-----chhhHHHHHHHhccccc
Confidence 4566664 42 68999999999999993
No 7
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=23.36 E-value=11 Score=32.44 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=16.2
Q ss_pred HHHHhcCCCcEEEEecCCCCc
Q 027998 27 ELIKYGFPEDIWFHVDKMSSA 47 (215)
Q Consensus 27 ~L~k~a~~~DlWFHv~~~pGa 47 (215)
.|-..+...++|||||..-|.
T Consensus 256 ~I~~i~~~~~~wlHVDAA~Gg 276 (476)
T d1js3a_ 256 EVGPICHEEDIWLHVDAAYAG 276 (476)
T ss_dssp HHHHHHHHTTCEEEEECTTGG
T ss_pred HHHHHHHhcCcEEEEecccch
Confidence 345777888999999977655
No 8
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]}
Probab=18.76 E-value=43 Score=22.88 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=27.5
Q ss_pred EEeCChhhhHHHHH---------hc-CCCcEEEEecCCCCcEEEEE
Q 027998 17 FMGLDKYENEELIK---------YG-FPEDIWFHVDKMSSAHVYLR 52 (215)
Q Consensus 17 ~vGRn~~ENe~L~k---------~a-~~~DlWFHv~~~pGaHViLR 52 (215)
+-||+..++..|.+ ++ .++|++.++.+.|..|.=..
T Consensus 67 ~~grs~eqK~~l~~~lt~~l~~~lgi~~~~v~I~i~e~~~~~W~~~ 112 (120)
T d1mwwa_ 67 MAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQPAHCWGFR 112 (120)
T ss_dssp ETTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECGGGEEET
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEECCHHHeEEC
Confidence 33899999999843 22 56789999999998887654
No 9
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=17.70 E-value=93 Score=22.12 Aligned_cols=47 Identities=23% Similarity=0.214 Sum_probs=32.6
Q ss_pred CcEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhccc-------ccCCCceEEEEEecc
Q 027998 46 SAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQ-------GNKVNNIDVVYTPWA 95 (215)
Q Consensus 46 GaHViLR~~~g~~~~~ipe~~L~~AAqLaa~~S~k-------g~k~~~V~V~YT~~k 95 (215)
|+|+.+-.|++- .+|++.+..+...+...... ......++|+||..-
T Consensus 28 g~~v~~~~P~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~~ 81 (163)
T d1pvva2 28 GADVVVATPEGY---EPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVW 81 (163)
T ss_dssp TCEEEEECCTTC---CCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCC
T ss_pred CCeEEEeccccc---CCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecce
Confidence 689999988764 57888888888887755411 012456888888653
No 10
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.14 E-value=61 Score=23.75 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=43.7
Q ss_pred EEEEe--CChhhhHHHHHhcCCCcEEEEecCCCCcEEEEEeCCCCCCCCCCHHHHHHHHHHHHHhccc-------ccCCC
Q 027998 15 TIFMG--LDKYENEELIKYGFPEDIWFHVDKMSSAHVYLRLHKGQTIDDISEGVLEDCAQLVKANSIQ-------GNKVN 85 (215)
Q Consensus 15 ~I~vG--Rn~~ENe~L~k~a~~~DlWFHv~~~pGaHViLR~~~g~~~~~ipe~~L~~AAqLaa~~S~k-------g~k~~ 85 (215)
..||| +|.--|-.+.-.+ .+ |.|+.+-+|+|- .++++.+..|-+++...+.. .....
T Consensus 8 ia~vGD~~nnV~~Sli~~~~----------~~-G~~l~l~~P~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~ 73 (185)
T d1dxha2 8 YAYLGDARNNMGNSLLLIGA----------KL-GMDVRIAAPKAL---WPHDEFVAQCKKFAEESGAKLTLTEDPKEAVK 73 (185)
T ss_dssp EEEESCCSSHHHHHHHHHHH----------HT-TCEEEEECCGGG---SCCHHHHHHHHHHHHHHTCEEEEESCHHHHTT
T ss_pred EEEEcCCcchHHHHHHHHHH----------Hc-CCEEEEEccHHH---HhhhHHHHHHHHHhhccCCeEEEEeChhhccc
Confidence 46788 4655555542221 23 789999988774 58899999999999876621 01245
Q ss_pred ceEEEEEec
Q 027998 86 NIDVVYTPW 94 (215)
Q Consensus 86 ~V~V~YT~~ 94 (215)
.++|+||..
T Consensus 74 ~aDvVyt~~ 82 (185)
T d1dxha2 74 GVDFVHTDV 82 (185)
T ss_dssp TCSEEEECC
T ss_pred cccEEEeeh
Confidence 678888843
Done!