Query 027999
Match_columns 215
No_of_seqs 130 out of 744
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 07:04:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uuj_A Platelet-activating fac 96.4 0.0036 1.2E-07 43.0 4.2 54 15-75 10-63 (88)
2 2xtc_A F-box-like/WD repeat-co 96.1 0.0052 1.8E-07 42.5 3.7 38 11-48 1-38 (90)
3 1vyh_C Platelet-activating fac 90.4 0.051 1.8E-06 46.5 0.0 55 14-75 7-61 (410)
4 2d68_A FOP, FGFR1OP; alpha hel 89.6 0.61 2.1E-05 31.4 4.8 31 16-46 19-49 (82)
5 2nxp_A Transcription initiatio 88.4 0.49 1.7E-05 35.8 4.2 60 88-149 50-109 (156)
6 2xz2_A CSTF-50, isoform B; RNA 73.8 3 0.0001 26.7 3.1 32 14-45 15-46 (66)
7 2j4b_A TAF5, transcription ini 72.8 5.2 0.00018 29.4 4.7 47 88-137 31-77 (138)
8 2j49_A Transcription initiatio 57.0 7.1 0.00024 29.0 2.8 46 89-137 34-79 (148)
9 3sjr_A Uncharacterized protein 48.4 62 0.0021 24.3 6.6 63 76-139 101-164 (175)
10 3sxm_A Transcriptional regulat 46.7 27 0.00091 24.4 4.5 32 51-82 97-128 (140)
11 2cp9_A EF-TS, EF-TSMT, elongat 42.9 14 0.00049 23.4 2.1 21 59-79 26-48 (64)
12 4a18_Q RPL36, 60S ribosomal pr 42.6 31 0.0011 24.0 4.0 45 92-136 51-98 (104)
13 2dna_A Unnamed protein product 41.8 25 0.00084 22.5 3.1 25 57-81 34-60 (67)
14 3mkr_A Coatomer subunit epsilo 40.9 1.3E+02 0.0045 23.7 11.1 90 17-119 66-157 (291)
15 3ej9_B Beta-subunit of trans-3 38.8 31 0.0011 22.1 3.2 27 153-179 11-37 (70)
16 3izc_k 60S ribosomal protein R 38.5 20 0.00069 24.8 2.5 43 95-137 53-95 (100)
17 1oyi_A Double-stranded RNA-bin 35.6 20 0.00067 23.9 2.0 47 14-69 14-60 (82)
18 1whc_A RSGI RUH-027, UBA/UBX 3 35.5 46 0.0016 20.7 3.7 16 66-81 35-50 (64)
19 3m20_A 4-oxalocrotonate tautom 35.5 43 0.0015 20.2 3.6 26 153-178 10-35 (62)
20 2wpv_A GET4, UPF0363 protein Y 35.3 1.5E+02 0.005 24.6 7.8 28 57-84 17-44 (312)
21 2bwb_A Ubiquitin-like protein 33.5 46 0.0016 19.3 3.3 13 65-77 32-44 (46)
22 2eap_A Lymphocyte cytosolic pr 33.4 29 0.00099 23.5 2.6 24 21-45 26-49 (90)
23 3ma5_A Tetratricopeptide repea 33.3 94 0.0032 19.8 6.4 72 61-137 15-88 (100)
24 2knz_A Ubiquilin-4; cytoplasm, 30.8 49 0.0017 19.7 3.1 15 65-79 36-50 (53)
25 3mb2_B 4-oxalocrotonate tautom 30.6 61 0.0021 20.9 3.6 26 153-178 13-38 (72)
26 1xi4_A Clathrin heavy chain; a 30.0 3.2E+02 0.011 28.1 10.3 111 16-141 1196-1326(1630)
27 3c1q_A General secretion pathw 29.8 36 0.0012 23.5 2.8 67 55-142 49-120 (123)
28 1gyx_A YDCE, B1461, hypothetic 29.4 52 0.0018 20.8 3.3 26 153-178 12-37 (76)
29 3u4t_A TPR repeat-containing p 28.7 1.8E+02 0.0061 21.6 11.3 17 62-78 46-62 (272)
30 2jy5_A Ubiquilin-1; UBA, alter 28.7 60 0.0021 19.2 3.3 14 65-78 37-50 (52)
31 2kc7_A BFR218_protein; tetratr 28.7 1.1E+02 0.0037 19.0 8.7 60 59-122 6-65 (99)
32 3ry0_A Putative tautomerase; o 28.4 56 0.0019 19.8 3.2 26 153-178 11-36 (65)
33 2dah_A Ubiquilin-3; UBA domain 27.9 76 0.0026 19.0 3.7 15 65-79 34-48 (54)
34 1wr1_B Ubiquitin-like protein 27.4 72 0.0025 19.5 3.5 15 65-79 42-56 (58)
35 2x4k_A 4-oxalocrotonate tautom 26.3 62 0.0021 18.9 3.1 25 153-177 14-38 (63)
36 2dba_A Smooth muscle cell asso 26.0 1.4E+02 0.0049 19.5 13.4 102 14-122 27-129 (148)
37 1otf_A 4-oxalocrotonate tautom 26.0 66 0.0022 18.9 3.2 25 154-178 12-36 (62)
38 3ihu_A Transcriptional regulat 26.0 74 0.0025 24.3 4.3 28 53-80 182-209 (222)
39 2v5f_A Prolyl 4-hydroxylase su 25.6 1.4E+02 0.0048 19.4 7.4 59 61-119 13-73 (104)
40 3sxy_A Transcriptional regulat 25.4 77 0.0026 24.1 4.3 31 51-81 172-202 (218)
41 3iko_C Nucleoporin NUP84; NPC, 25.3 50 0.0017 29.1 3.4 25 55-79 179-203 (460)
42 2opa_A Probable tautomerase YW 24.7 73 0.0025 18.6 3.2 25 154-178 12-36 (61)
43 3m21_A Probable tautomerase HP 24.7 75 0.0026 19.3 3.4 27 152-178 13-39 (67)
44 2vgx_A Chaperone SYCD; alterna 24.3 1.8E+02 0.0061 20.1 11.4 92 20-120 26-117 (148)
45 1vek_A UBP14, ubiquitin-specif 23.8 90 0.0031 20.6 3.7 24 58-81 44-70 (84)
46 3mkq_A Coatomer beta'-subunit; 23.7 1.8E+02 0.006 26.1 6.9 50 15-79 629-678 (814)
47 3r8n_T 30S ribosomal protein S 23.6 88 0.003 20.8 3.6 29 57-85 30-58 (85)
48 4b4t_R RPN7, 26S proteasome re 23.3 2.2E+02 0.0074 24.2 7.1 104 18-123 133-239 (429)
49 2di3_A Bacterial regulatory pr 23.3 96 0.0033 24.0 4.5 28 53-80 192-219 (239)
50 2hs5_A Putative transcriptiona 23.2 96 0.0033 24.1 4.5 26 54-79 195-220 (239)
51 4ae4_A Ubiquitin-associated pr 23.1 62 0.0021 22.9 2.9 24 56-79 89-114 (118)
52 2crn_A Ubash3A protein; compac 23.0 1E+02 0.0034 19.2 3.7 23 58-80 24-49 (64)
53 3ieg_A DNAJ homolog subfamily 23.0 2.6E+02 0.0088 21.4 13.6 15 64-78 199-213 (359)
54 3k9i_A BH0479 protein; putativ 22.9 1.6E+02 0.0055 19.0 6.6 61 61-126 35-95 (117)
55 3abf_A 4-oxalocrotonate tautom 22.5 99 0.0034 18.2 3.6 26 153-178 12-37 (64)
56 2pm7_A Protein WEB1, protein t 22.5 55 0.0019 28.2 3.1 24 56-79 146-169 (399)
57 1y0n_A Hypothetical UPF0270 pr 22.4 50 0.0017 21.7 2.1 44 12-69 9-52 (78)
58 2jpq_A UPF0352 protein VP2129; 22.3 1.2E+02 0.0042 20.0 4.0 24 153-176 49-72 (83)
59 1z96_A DNA-damage, UBA-domain 22.1 86 0.0029 16.9 2.9 11 66-76 29-39 (40)
60 3ej9_A Alpha-subunit of trans- 21.8 85 0.0029 19.8 3.2 26 153-178 12-37 (76)
61 1vej_A Riken cDNA 4931431F19; 21.7 65 0.0022 20.9 2.6 23 57-79 44-68 (74)
62 3mf7_A CIS-3-chloroacrylic aci 21.3 97 0.0033 22.6 3.8 26 152-177 11-36 (149)
63 1hw1_A FADR, fatty acid metabo 21.1 79 0.0027 24.3 3.6 26 54-79 190-215 (239)
64 3q15_A PSP28, response regulat 21.0 3.2E+02 0.011 21.8 7.7 108 12-122 6-131 (378)
65 3mb2_A 4-oxalocrotonate tautom 20.9 91 0.0031 19.3 3.2 26 153-178 12-37 (72)
66 2y4t_A DNAJ homolog subfamily 20.8 3.3E+02 0.011 21.9 12.3 59 60-119 264-322 (450)
67 2ekk_A UBA domain from E3 ubiq 20.4 62 0.0021 18.6 2.1 15 65-79 32-46 (47)
68 3ggy_A Increased sodium tolera 20.1 2.5E+02 0.0085 21.6 6.1 25 55-79 36-60 (193)
No 1
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=96.40 E-value=0.0036 Score=43.01 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHH
Q 027999 15 DNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIEL 75 (215)
Q Consensus 15 ~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~ 75 (215)
+++||+-|++||...||.+++.+|.+|++++.+. +. . ..-.-+++.+|+..+.+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~---~~--~--~ky~gLLEKKWTSViRL 63 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNE---EL--D--KKYAGLLEKKWTSVIRL 63 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCH---HH--H--HHHTTHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCc---hh--h--hhhhhhhhhhHHHHHHH
Confidence 4689999999999999999999999999876542 10 1 12344555556555543
No 2
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=96.08 E-value=0.0052 Score=42.45 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCC
Q 027999 11 IAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPA 48 (215)
Q Consensus 11 ~~~~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~ 48 (215)
++++.+++|.||-.||...||..||-+|.+|+++..+.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~ 38 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSN 38 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence 46789999999999999999999999999999886543
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=90.37 E-value=0.051 Score=46.55 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHH
Q 027999 14 NDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIEL 75 (215)
Q Consensus 14 ~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~ 75 (215)
.+++++++|++||..+||.+++.+|.+|++++... ........+++++|+..+..
T Consensus 7 q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~-------~~~~~~~~~~~~~w~~~~~l 61 (410)
T 1vyh_C 7 QRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNE-------ELDKKYAGLLEKKWTSVIRL 61 (410)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCc-------chhhhhhchhhhhhhheeeH
Confidence 35789999999999999999999999999875322 11233344566777666553
No 4
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=89.57 E-value=0.61 Score=31.45 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhCCCC
Q 027999 16 NDIHNIVLSYLVHNCYKETVDSFISCTGMKQ 46 (215)
Q Consensus 16 ~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~ 46 (215)
..++.||.+||-..||.=|+..|..|+|.+.
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~ 49 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQ 49 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCCC
Confidence 4688999999999999999999999999864
No 5
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=88.43 E-value=0.49 Score=35.78 Aligned_cols=60 Identities=20% Similarity=0.219 Sum_probs=45.1
Q ss_pred CcchhhhhHHHHHHHHhccchhhHHHHHHHhccccCCchhHHHHHHHHHhHhccCCCCCCch
Q 027999 88 KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPM 149 (215)
Q Consensus 88 ~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~~~~~~~~l~~~~~lla~~~~~~s~~ 149 (215)
..+.|=+-+.-|++|+.+|...+|-.|..+.-..+. +.+.+.++.+.++.--.+..+.+.
T Consensus 50 ~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~~~~~i~~L~~i~~~~~l~~n~~ 109 (156)
T 2nxp_A 50 SQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE--CYYQDDLRVLSSLTKKEHMKGNET 109 (156)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC--GGGHHHHHHHHTCCSHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhH--HHHHHHHHHHhcCCCHHHHhhcHH
Confidence 478899999999999999999999999987666664 667788887665443333334443
No 6
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=73.84 E-value=3 Score=26.68 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCC
Q 027999 14 NDNDIHNIVLSYLVHNCYKETVDSFISCTGMK 45 (215)
Q Consensus 14 ~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~ 45 (215)
+++.|-|||..=|.+-||...|..+.+..+..
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~ 46 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKAD 46 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 47789999999999999999999999988754
No 7
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=72.75 E-value=5.2 Score=29.39 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=35.7
Q ss_pred CcchhhhhHHHHHHHHhccchhhHHHHHHHhccccCCchhHHHHHHHHHh
Q 027999 88 KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA 137 (215)
Q Consensus 88 ~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~~~~~~~~l~~~~~ 137 (215)
..+.|=+-+.-|++|+.+|...+|-.|-.+.-..+. .. .+.++.+.+
T Consensus 31 ~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~-~~~i~~L~~ 77 (138)
T 2j4b_A 31 LPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY--NK-SEEIKQFES 77 (138)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----C-HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHh--hH-HHHHHHHhc
Confidence 478899999999999999999999999887665554 23 556665443
No 8
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=57.03 E-value=7.1 Score=29.05 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=35.1
Q ss_pred cchhhhhHHHHHHHHhccchhhHHHHHHHhccccCCchhHHHHHHHHHh
Q 027999 89 DLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA 137 (215)
Q Consensus 89 ~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~~~~~~~~l~~~~~ 137 (215)
.+.|=+-+.-|++|+.+| ..+|-.|-.++-..+. ..+.+.++.+.+
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~--~~~~~~i~~L~~ 79 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFK--DFHGSEINRLFS 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGH--HHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhH--HHHHHHHHHHhc
Confidence 578999999999999999 9999999887665554 455566664433
No 9
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=48.35 E-value=62 Score=24.28 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=43.0
Q ss_pred HHHhcHHHHccCCcchhhhhHHHHHHHHhccchhhHHHHHHHhccccCC-chhHHHHHHHHHhHh
Q 027999 76 TEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK-VQKYVEKLEDFMALL 139 (215)
Q Consensus 76 ~~~~~p~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~-~~~~~~~l~~~~~ll 139 (215)
.-..|+...+.|+++.+.=....|+++|+.| ++.-..-|+..|.-+.- +......|..+..|.
T Consensus 101 aT~FF~~yq~qhPd~~~ee~L~~Fm~lIgGG-iEqGF~EArdIL~GL~VleG~IA~~IdkTY~Lv 164 (175)
T 3sjr_A 101 MEILMELYRQQHPDWTAPAIRQAFAPLARAG-LERGYQEACQVLRQLNVYTPAVAGQLQGLLLLT 164 (175)
T ss_dssp HHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHhHHHHHHHHhhccccCcHHHHhHHHHHHHH
Confidence 3445555566899999999999999999976 66666666666655543 455555566555443
No 10
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=46.65 E-value=27 Score=24.44 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=26.9
Q ss_pred HHhHHHHHHHHHHHHcCCHHHHHHHHHHhcHH
Q 027999 51 LEDMEMRKRILHFALEGNALKAIELTEELAQD 82 (215)
Q Consensus 51 ~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~ 82 (215)
...+.....|.++|..||.+.|.+.+..|.-.
T Consensus 97 ~~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl~~ 128 (140)
T 3sxm_A 97 VVSNREHKELIERIISGDKEGAIEKLKEHLKN 128 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678888999999999999999999887543
No 11
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=42.93 E-value=14 Score=23.40 Aligned_cols=21 Identities=10% Similarity=-0.113 Sum_probs=15.8
Q ss_pred HHHHHH--HcCCHHHHHHHHHHh
Q 027999 59 RILHFA--LEGNALKAIELTEEL 79 (215)
Q Consensus 59 ~I~~~I--~~G~i~~Ai~~~~~~ 79 (215)
..++++ .+||++.|++|+.+.
T Consensus 26 dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 26 NCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 344444 479999999999865
No 12
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=42.58 E-value=31 Score=23.99 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHhccc---hhhHHHHHHHhccccCCchhHHHHHHHHH
Q 027999 92 FDLLSLHFVELVCSRK---CTEALEFAQTKLTPFGKVQKYVEKLEDFM 136 (215)
Q Consensus 92 F~L~~q~fiEli~~~~---~~~Al~~ar~~l~~~~~~~~~~~~l~~~~ 136 (215)
|-=+..+.+||++.+. --.|+.|++..+..+..-....++++.+.
T Consensus 51 faPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~RAKrKreel~~vl 98 (104)
T 4a18_Q 51 FAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVKKALLEEAV 98 (104)
T ss_dssp CCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4445678899999998 68899999998877653223344555443
No 13
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=41.75 E-value=25 Score=22.48 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=17.4
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHHhcH
Q 027999 57 RKRILHFA--LEGNALKAIELTEELAQ 81 (215)
Q Consensus 57 r~~I~~~I--~~G~i~~Ai~~~~~~~p 81 (215)
|+..++++ ..||++.|++|+-.+-+
T Consensus 34 ~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 34 YNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 44544444 36899999999987643
No 14
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=40.94 E-value=1.3e+02 Score=23.69 Aligned_cols=90 Identities=8% Similarity=-0.057 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhc-HHHHHHHHHHhhCCC-CCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcchhhh
Q 027999 17 DIHNIVLSYLVHNC-YKETVDSFISCTGMK-QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDL 94 (215)
Q Consensus 17 ~l~~lI~~yL~~~G-y~eta~~f~~e~~~~-~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~l~~~~~~l~F~L 94 (215)
....++++|+...| +.++...|.+-.... .|. .... ....-.-+...|++++|++++++ | .+....+.+
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~-~~~~--~~~la~~~~~~g~~~~Al~~l~~--~----~~~~~~~~l 136 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT-NTTF--LLMAASIYFYDQNPDAALRTLHQ--G----DSLECMAMT 136 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS-CHHH--HHHHHHHHHHTTCHHHHHHHHTT--C----CSHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC-CHHH--HHHHHHHHHHCCCHHHHHHHHhC--C----CCHHHHHHH
Confidence 34566777777777 444444454422211 122 1111 11111334567788888877766 1 111111111
Q ss_pred hHHHHHHHHhccchhhHHHHHHHhc
Q 027999 95 LSLHFVELVCSRKCTEALEFAQTKL 119 (215)
Q Consensus 95 ~~q~fiEli~~~~~~~Al~~ar~~l 119 (215)
-.=+.+.|+.++|+...++-+
T Consensus 137 ----~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 137 ----VQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp ----HHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHCCCHHHHHHHHHHHH
Confidence 112345667777776665433
No 15
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=38.77 E-value=31 Score=22.15 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCc
Q 027999 153 LSLEYRQHVADNLNRAILAHAERPRYA 179 (215)
Q Consensus 153 l~~~~r~~la~~vn~~il~~~~~~~~s 179 (215)
-+.+++.++...|.+++++.+|-|+++
T Consensus 11 RT~EQK~~lI~~VT~a~~eslgap~es 37 (70)
T 3ej9_B 11 LSVARKQQLIRDVIDVTNKSIGSDPKI 37 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 467899999999999999999998753
No 16
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=38.48 E-value=20 Score=24.76 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=31.7
Q ss_pred hHHHHHHHHhccchhhHHHHHHHhccccCCchhHHHHHHHHHh
Q 027999 95 LSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA 137 (215)
Q Consensus 95 ~~q~fiEli~~~~~~~Al~~ar~~l~~~~~~~~~~~~l~~~~~ 137 (215)
+..+.+||++.+.--.|+.|++..+..+..-....+++..+.+
T Consensus 53 YErr~mELLkvskdKrAlKf~KKRlGth~RAKrKreel~~vl~ 95 (100)
T 3izc_k 53 YERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIA 95 (100)
T ss_dssp SCCHHHHHHHHHTSCCSHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4457889999998889999999988877643344556665443
No 17
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=35.62 E-value=20 Score=23.88 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCH
Q 027999 14 NDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNA 69 (215)
Q Consensus 14 ~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i 69 (215)
+...+-+-|+++|...| -+|..++++.|++.. ..|+.+..+-.+|-|
T Consensus 14 ~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~-------aVr~~L~~Le~eG~I 60 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR-------EVNKALYDLQRSAMV 60 (82)
T ss_dssp CSHHHHHHHHHHHSSST--EEHHHHHHHSSSCHH-------HHHHHHHHHHHHTSS
T ss_pred chHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH-------HHHHHHHHHHHCCCE
Confidence 44456777889999999 899999999997532 456677777666654
No 18
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.54 E-value=46 Score=20.72 Aligned_cols=16 Identities=13% Similarity=0.055 Sum_probs=13.3
Q ss_pred cCCHHHHHHHHHHhcH
Q 027999 66 EGNALKAIELTEELAQ 81 (215)
Q Consensus 66 ~G~i~~Ai~~~~~~~p 81 (215)
.|+++.|++|+-.+.+
T Consensus 35 ~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 35 NQGIEAAMDWLMEHED 50 (64)
T ss_dssp SCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhCCC
Confidence 5799999999987743
No 19
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=35.51 E-value=43 Score=20.23 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCC
Q 027999 153 LSLEYRQHVADNLNRAILAHAERPRY 178 (215)
Q Consensus 153 l~~~~r~~la~~vn~~il~~~~~~~~ 178 (215)
.+.++..+++..+..++...+|.|++
T Consensus 10 rt~eqK~~L~~~it~~~~~~lg~~~~ 35 (62)
T 3m20_A 10 LDVGKKREFVERLTSVAAEIYGMDRS 35 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 46788999999999999999999864
No 20
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=35.31 E-value=1.5e+02 Score=24.61 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcHHHH
Q 027999 57 RKRILHFALEGNALKAIELTEELAQDLL 84 (215)
Q Consensus 57 r~~I~~~I~~G~i~~Ai~~~~~~~p~l~ 84 (215)
..+++..|.+|+..+|...++..+-+..
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~ 44 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTIANRYV 44 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 3444455555555555544444443333
No 21
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=33.49 E-value=46 Score=19.26 Aligned_cols=13 Identities=15% Similarity=0.097 Sum_probs=10.9
Q ss_pred HcCCHHHHHHHHH
Q 027999 65 LEGNALKAIELTE 77 (215)
Q Consensus 65 ~~G~i~~Ai~~~~ 77 (215)
..||++.|++|+-
T Consensus 32 ~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 32 SGGSVQGALDSLL 44 (46)
T ss_dssp HTTCHHHHHHHHH
T ss_pred hCCCHHHHHHHHH
Confidence 5689999999974
No 22
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.42 E-value=29 Score=23.46 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=19.6
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhCCC
Q 027999 21 IVLSYLVHNCYKETVDSFISCTGMK 45 (215)
Q Consensus 21 lI~~yL~~~Gy~eta~~f~~e~~~~ 45 (215)
=|++||-..||.+ ++.|++...+.
T Consensus 26 ~VadWLkk~g~~~-cd~lv~Kh~ID 49 (90)
T 2eap_A 26 SLADYFKKLNYKD-CEKAVKKYHID 49 (90)
T ss_dssp THHHHHHHTTCHH-HHHHHHHTTCC
T ss_pred HHHHHHHHcCCch-HHHHHHHhccC
Confidence 3789999999999 89998665553
No 23
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=33.33 E-value=94 Score=19.80 Aligned_cols=72 Identities=18% Similarity=0.098 Sum_probs=39.4
Q ss_pred HHHHHcCCHHHHHHHHHHhcHHHHccCCcchhhhhHHHHHHHHhccchhhHHHHHHHhccccC--CchhHHHHHHHHHh
Q 027999 61 LHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFG--KVQKYVEKLEDFMA 137 (215)
Q Consensus 61 ~~~I~~G~i~~Ai~~~~~~~p~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~--~~~~~~~~l~~~~~ 137 (215)
.-....|++++|++++.+.- .+...+....+.| -.-+...|+..+|+.+.++-+.-.. .+.....+++.++.
T Consensus 15 ~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~l----g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 15 QEHLKHDNASRALALFEELV-ETDPDYVGTYYHL----GKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHSTTCTHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH-HhCCCcHHHHHHH----HHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 34567899999999987542 1111222333322 1223456889999888876553221 13334445554443
No 24
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=30.84 E-value=49 Score=19.73 Aligned_cols=15 Identities=27% Similarity=0.076 Sum_probs=12.4
Q ss_pred HcCCHHHHHHHHHHh
Q 027999 65 LEGNALKAIELTEEL 79 (215)
Q Consensus 65 ~~G~i~~Ai~~~~~~ 79 (215)
..||++.|++|+-.+
T Consensus 36 t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 36 TGGDINAAIERLLGS 50 (53)
T ss_dssp HTSCHHHHHHHHHHC
T ss_pred hCCCHHHHHHHHHHc
Confidence 568999999998654
No 25
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=30.62 E-value=61 Score=20.88 Aligned_cols=26 Identities=12% Similarity=-0.026 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCC
Q 027999 153 LSLEYRQHVADNLNRAILAHAERPRY 178 (215)
Q Consensus 153 l~~~~r~~la~~vn~~il~~~~~~~~ 178 (215)
.+.+++.+++.++.+.+++..|-|+.
T Consensus 13 RT~EQKralaeE~T~if~evLGcpPg 38 (72)
T 3mb2_B 13 PDRTRKQAFAAEASAIFQRVIGTPPG 38 (72)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45789999999999999999998864
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=29.97 E-value=3.2e+02 Score=28.11 Aligned_cols=111 Identities=9% Similarity=0.080 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHHh-cHHHHccC-----Cc
Q 027999 16 NDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEEL-AQDLLEKN-----KD 89 (215)
Q Consensus 16 ~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~-~p~l~~~~-----~~ 89 (215)
..+.+ +++|+...|.++.|..|-+.++ .-.+...-.+.-|+++.|++.+.+- .+.....- ..
T Consensus 1196 ad~~~-iGd~le~eg~YeeA~~~Y~kA~-----------ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1196 AHIQQ-VGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHhhh-----------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhh
Confidence 44554 9999999999999999877643 1223334455669999999888543 33322110 01
Q ss_pred chhhhhHHHHHHHH--------------hccchhhHHHHHHHhccccCCchhHHHHHHHHHhHhcc
Q 027999 90 LHFDLLSLHFVELV--------------CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAY 141 (215)
Q Consensus 90 l~F~L~~q~fiEli--------------~~~~~~~Al~~ar~~l~~~~~~~~~~~~l~~~~~lla~ 141 (215)
=+|.|=++..+.++ +.|..++||.+...-+. . ++.+...+.++.-+.+-
T Consensus 1264 ~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~-L--eraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1264 KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG-L--ERAHMGMFTELAILYSK 1326 (1630)
T ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-c--ChhHhHHHHHHHHHHHh
Confidence 12444333332221 34678888888865542 1 24455555555555543
No 27
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=29.75 E-value=36 Score=23.55 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHhcHHHHccCCcchhhhhHHHHHHHHh----ccchhhHHHHHHHhccccCCchhHH
Q 027999 55 EMRKRILHFALEGN-ALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVC----SRKCTEALEFAQTKLTPFGKVQKYV 129 (215)
Q Consensus 55 ~~r~~I~~~I~~G~-i~~Ai~~~~~~~p~l~~~~~~l~F~L~~q~fiEli~----~~~~~~Al~~ar~~l~~~~~~~~~~ 129 (215)
.....|++.|..|. +.+|++.....+|.. ++.+|+ .|+.++++.-.-+.+ .+..
T Consensus 49 ~~l~~i~~~l~~G~sls~Al~~~~~~fp~~---------------~~~mi~~GE~sG~L~~~L~~la~~~------e~~~ 107 (123)
T 3c1q_A 49 TMLVAVRAKVTEGYTLSDSLGDYPHVFDEL---------------FRSMVAAGEKSGHLDSVLERLADYA------ENRQ 107 (123)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTTCTTTSCHH---------------HHHHHHHHHHHTCHHHHHHHHHHHH------HHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHhccccCCHH---------------HHHHHHHHHHhCcHHHHHHHHHHHH------HHHH
Confidence 34567888888884 777775433334432 455554 467777776655433 2223
Q ss_pred HHHHHHHhHhccC
Q 027999 130 EKLEDFMALLAYE 142 (215)
Q Consensus 130 ~~l~~~~~lla~~ 142 (215)
+.-.++.+.++||
T Consensus 108 ~~~~~~~~al~YP 120 (123)
T 3c1q_A 108 KMRSKLQQASENL 120 (123)
T ss_dssp HHHHHHHTTC---
T ss_pred HHHHHHHHHHhcc
Confidence 3344566777775
No 28
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=29.44 E-value=52 Score=20.76 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCC
Q 027999 153 LSLEYRQHVADNLNRAILAHAERPRY 178 (215)
Q Consensus 153 l~~~~r~~la~~vn~~il~~~~~~~~ 178 (215)
++.+++.+++..+..++...+|.|+.
T Consensus 12 ls~eqk~~L~~~l~~~l~~~lgip~~ 37 (76)
T 1gyx_A 12 LDEQQKAALAADITDVIIRHLNSKDS 37 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCCc
Confidence 47889999999999999999999864
No 29
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=28.74 E-value=1.8e+02 Score=21.59 Aligned_cols=17 Identities=12% Similarity=-0.201 Sum_probs=9.1
Q ss_pred HHHHcCCHHHHHHHHHH
Q 027999 62 HFALEGNALKAIELTEE 78 (215)
Q Consensus 62 ~~I~~G~i~~Ai~~~~~ 78 (215)
-....|++++|++.+.+
T Consensus 46 ~~~~~~~~~~A~~~~~~ 62 (272)
T 3u4t_A 46 CYYELAKYDLAQKDIET 62 (272)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 34455566666555544
No 30
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=28.66 E-value=60 Score=19.23 Aligned_cols=14 Identities=29% Similarity=0.131 Sum_probs=11.1
Q ss_pred HcCCHHHHHHHHHH
Q 027999 65 LEGNALKAIELTEE 78 (215)
Q Consensus 65 ~~G~i~~Ai~~~~~ 78 (215)
..||++.|++|+-.
T Consensus 37 t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 37 TGGDINAAIERLLG 50 (52)
T ss_dssp HTTCHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHh
Confidence 45899999999843
No 31
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=28.66 E-value=1.1e+02 Score=18.96 Aligned_cols=60 Identities=17% Similarity=0.043 Sum_probs=35.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcHHHHccCCcchhhhhHHHHHHHHhccchhhHHHHHHHhcccc
Q 027999 59 RILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPF 122 (215)
Q Consensus 59 ~I~~~I~~G~i~~Ai~~~~~~~p~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~ 122 (215)
.-...+..|++++|++.+.+. ++.++.-.-..+...-.-+...|+..+|+.+.++-+.-.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~a----l~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEF----LQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH----HHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHH----HHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445677899999999998764 222222111011111222345688999998888755433
No 32
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=28.42 E-value=56 Score=19.78 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCC
Q 027999 153 LSLEYRQHVADNLNRAILAHAERPRY 178 (215)
Q Consensus 153 l~~~~r~~la~~vn~~il~~~~~~~~ 178 (215)
.+.+++.+|+..+..++...+|.|+.
T Consensus 11 rs~eqk~~L~~~it~~~~~~lg~p~~ 36 (65)
T 3ry0_A 11 RSPQEVAALGEALTAAAHETLGTPVE 36 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 46889999999999999999999864
No 33
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.95 E-value=76 Score=19.01 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=12.8
Q ss_pred HcCCHHHHHHHHHHh
Q 027999 65 LEGNALKAIELTEEL 79 (215)
Q Consensus 65 ~~G~i~~Ai~~~~~~ 79 (215)
..||++.|++|+-.+
T Consensus 34 ~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 34 TGGDVDAAVEKLRQS 48 (54)
T ss_dssp HTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhC
Confidence 579999999999765
No 34
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=27.38 E-value=72 Score=19.51 Aligned_cols=15 Identities=13% Similarity=0.007 Sum_probs=12.1
Q ss_pred HcCCHHHHHHHHHHh
Q 027999 65 LEGNALKAIELTEEL 79 (215)
Q Consensus 65 ~~G~i~~Ai~~~~~~ 79 (215)
..||++.|++|+-.+
T Consensus 42 ~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 42 SGGSVQGALDSLLNG 56 (58)
T ss_dssp HTSCHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHhC
Confidence 568999999998653
No 35
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=26.26 E-value=62 Score=18.90 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCC
Q 027999 153 LSLEYRQHVADNLNRAILAHAERPR 177 (215)
Q Consensus 153 l~~~~r~~la~~vn~~il~~~~~~~ 177 (215)
.+.+++.+++..+..++...+|.|.
T Consensus 14 ~s~e~k~~l~~~l~~~l~~~lg~p~ 38 (63)
T 2x4k_A 14 RSDEQLKNLVSEVTDAVEKTTGANR 38 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 3678899999999999999999985
No 36
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.04 E-value=1.4e+02 Score=19.54 Aligned_cols=102 Identities=9% Similarity=-0.030 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHH-hHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcchh
Q 027999 14 NDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLE-DMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHF 92 (215)
Q Consensus 14 ~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~-~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~l~~~~~~l~F 92 (215)
+...+..+...|+...-|.++...|.+-..+.. . ... .......-.-....|++++|++++..... +...+....+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-T-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIE-KDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-c-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh-hCccCHHHHH
Confidence 444555555556655666666667766655432 1 111 11122233446788999999999876421 1112212222
Q ss_pred hhhHHHHHHHHhccchhhHHHHHHHhcccc
Q 027999 93 DLLSLHFVELVCSRKCTEALEFAQTKLTPF 122 (215)
Q Consensus 93 ~L~~q~fiEli~~~~~~~Al~~ar~~l~~~ 122 (215)
. .-.-+...|+..+|+.+.++-+.-.
T Consensus 104 ~----~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 R----RSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp H----HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred H----HHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2 2222345688999998888655433
No 37
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=25.99 E-value=66 Score=18.89 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCC
Q 027999 154 SLEYRQHVADNLNRAILAHAERPRY 178 (215)
Q Consensus 154 ~~~~r~~la~~vn~~il~~~~~~~~ 178 (215)
+.+++.+++..+..++...+|.|+.
T Consensus 12 s~e~k~~l~~~i~~~l~~~lg~p~~ 36 (62)
T 1otf_A 12 TDEQKETLIRQVSEAMANSLDAPLE 36 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 6788999999999999999999853
No 38
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=25.96 E-value=74 Score=24.33 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 027999 53 DMEMRKRILHFALEGNALKAIELTEELA 80 (215)
Q Consensus 53 ~~~~r~~I~~~I~~G~i~~Ai~~~~~~~ 80 (215)
.+.+...|.++|..||.+.|.+.+..|.
T Consensus 182 ~~~eH~~I~~Ai~~~d~~~A~~~~~~Hl 209 (222)
T 3ihu_A 182 RLDDYRRIATAVLAGEPDAAEAAGAAHV 209 (222)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566778888888888888888877764
No 39
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=25.58 E-value=1.4e+02 Score=19.36 Aligned_cols=59 Identities=14% Similarity=0.017 Sum_probs=33.9
Q ss_pred HHHHHcCCHHHHHHHHHHhcHHHHccC-Cc-chhhhhHHHHHHHHhccchhhHHHHHHHhc
Q 027999 61 LHFALEGNALKAIELTEELAQDLLEKN-KD-LHFDLLSLHFVELVCSRKCTEALEFAQTKL 119 (215)
Q Consensus 61 ~~~I~~G~i~~Ai~~~~~~~p~l~~~~-~~-l~F~L~~q~fiEli~~~~~~~Al~~ar~~l 119 (215)
..+...|++..|+.|...-.-..-... .. -.-.++.+--.-+.+.|+..+|+.+.++-+
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 456688999999999987543222211 01 111111111222346788999998887644
No 40
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=25.35 E-value=77 Score=24.14 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=25.9
Q ss_pred HHhHHHHHHHHHHHHcCCHHHHHHHHHHhcH
Q 027999 51 LEDMEMRKRILHFALEGNALKAIELTEELAQ 81 (215)
Q Consensus 51 ~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p 81 (215)
...+.....|.++|.+||.+.|.+.+..|.-
T Consensus 172 ~~~~~~H~~i~~ai~~~d~~~A~~~~~~Hl~ 202 (218)
T 3sxy_A 172 VVSNREHKELIERIISGDKEGAIEKLKEHLK 202 (218)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567788899999999999999999888753
No 41
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=25.30 E-value=50 Score=29.08 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh
Q 027999 55 EMRKRILHFALEGNALKAIELTEEL 79 (215)
Q Consensus 55 ~~r~~I~~~I~~G~i~~Ai~~~~~~ 79 (215)
...+.|-.+|+.|++++|++||+..
T Consensus 179 ~l~~~i~~liR~G~~~eA~~lc~~~ 203 (460)
T 3iko_C 179 IFFKYIYELILAGAIDEALEEAKLS 203 (460)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 4456788999999999999999865
No 42
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=24.74 E-value=73 Score=18.64 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCC
Q 027999 154 SLEYRQHVADNLNRAILAHAERPRY 178 (215)
Q Consensus 154 ~~~~r~~la~~vn~~il~~~~~~~~ 178 (215)
+.+++.+++..+..++...+|.|+.
T Consensus 12 s~eqk~~l~~~i~~~l~~~lg~~~~ 36 (61)
T 2opa_A 12 TDEQKRNLVEKVTEAVKETTGASEE 36 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 6788999999999999999999853
No 43
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=24.71 E-value=75 Score=19.31 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=23.3
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 027999 152 LLSLEYRQHVADNLNRAILAHAERPRY 178 (215)
Q Consensus 152 ll~~~~r~~la~~vn~~il~~~~~~~~ 178 (215)
-.+.++..+++..+..++...+|.|+.
T Consensus 13 grs~eqK~~l~~~lt~~l~~~lg~p~~ 39 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVLNKNKA 39 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCcc
Confidence 356788999999999999999999853
No 44
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=24.26 E-value=1.8e+02 Score=20.07 Aligned_cols=92 Identities=11% Similarity=-0.112 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcchhhhhHHHH
Q 027999 20 NIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHF 99 (215)
Q Consensus 20 ~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~l~~~~~~l~F~L~~q~f 99 (215)
.+-..|+...-|.++...|.+-..+. |. ....... .-.-....|++++|++.+.+.- .+...++...|.+ =
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~-~~~~~~~--lg~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~~~l----g 96 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLD-HY-DSRFFLG--LGACRQAMGQYDLAIHSYSYGA-VMDIXEPRFPFHA----A 96 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TT-CHHHHHH--HHHHHHHTTCHHHHHHHHHHHH-HHSTTCTHHHHHH----H
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-cc-cHHHHHH--HHHHHHHHhhHHHHHHHHHHHH-hcCCCCchHHHHH----H
Confidence 33334444444556666666544432 22 2222222 2234567899999999887642 1222333344333 1
Q ss_pred HHHHhccchhhHHHHHHHhcc
Q 027999 100 VELVCSRKCTEALEFAQTKLT 120 (215)
Q Consensus 100 iEli~~~~~~~Al~~ar~~l~ 120 (215)
.-+...|+..+|+.+.++-+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 223467899999988876544
No 45
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=23.82 E-value=90 Score=20.57 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=16.7
Q ss_pred HHHHHHHH-c--CCHHHHHHHHHHhcH
Q 027999 58 KRILHFAL-E--GNALKAIELTEELAQ 81 (215)
Q Consensus 58 ~~I~~~I~-~--G~i~~Ai~~~~~~~p 81 (215)
.+.+.++. . ++++.|++|+-.+.+
T Consensus 44 ~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 44 LHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 44555543 3 589999999988743
No 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=23.71 E-value=1.8e+02 Score=26.14 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 027999 15 DNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEEL 79 (215)
Q Consensus 15 ~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~ 79 (215)
...+ +-++.||...||.+.|..+.++ ...+...++..|+++.|.+.++..
T Consensus 629 ~~~~-~~~~~~l~~~~~~~~a~~~~~~--------------~~~~f~~~l~~~~~~~A~~~~~~~ 678 (814)
T 3mkq_A 629 KDSL-TKIARFLEGQEYYEEALNISPD--------------QDQKFELALKVGQLTLARDLLTDE 678 (814)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHCCC--------------HHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred hHHH-HHHHHHHHhCCChHHheecCCC--------------cchheehhhhcCCHHHHHHHHHhh
Confidence 4444 6677889999999888877632 234567789999999999988654
No 47
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=23.59 E-value=88 Score=20.80 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcHHHHc
Q 027999 57 RKRILHFALEGNALKAIELTEELAQDLLE 85 (215)
Q Consensus 57 r~~I~~~I~~G~i~~Ai~~~~~~~p~l~~ 85 (215)
.+.++.+|..||.+.|.+.+..-.|.|-.
T Consensus 30 iKk~~~Ai~~gd~~~A~~~l~~a~~~iDk 58 (85)
T 3r8n_T 30 IKKVYAAIEAGDKAAAQKAFNEMQPIVDR 58 (85)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 35677889999999999998887776544
No 48
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.30 E-value=2.2e+02 Score=24.24 Aligned_cols=104 Identities=11% Similarity=-0.003 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhCC--CCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHcc-CCcchhhh
Q 027999 18 IHNIVLSYLVHNCYKETVDSFISCTGM--KQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEK-NKDLHFDL 94 (215)
Q Consensus 18 l~~lI~~yL~~~Gy~eta~~f~~e~~~--~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~l~~~-~~~l~F~L 94 (215)
...-.++|+...|-.+.|...-.+.-. ..+....+ -....|+-.+..|||..|...+++...-..+. ++...-.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid--~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKID--VMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHH--HHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 344567777777755444443322110 01111112 23457888999999999999998875443332 33444455
Q ss_pred hHHHHHHHHhccchhhHHHHHHHhccccC
Q 027999 95 LSLHFVELVCSRKCTEALEFAQTKLTPFG 123 (215)
Q Consensus 95 ~~q~fiEli~~~~~~~Al~~ar~~l~~~~ 123 (215)
++..-+-.+..++..+|-.+-.+-+..|.
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 55555555556677776655555555554
No 49
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=23.30 E-value=96 Score=23.98 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 027999 53 DMEMRKRILHFALEGNALKAIELTEELA 80 (215)
Q Consensus 53 ~~~~r~~I~~~I~~G~i~~Ai~~~~~~~ 80 (215)
.+.....|.++|..||.+.|.+.+.++.
T Consensus 192 ~~~eH~~I~~Ai~~~D~~~A~~~m~~Hl 219 (239)
T 2di3_A 192 LQKEHRAILAALRAGESTVAATLIKEHI 219 (239)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4456667788888888888877777664
No 50
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=23.17 E-value=96 Score=24.14 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 027999 54 MEMRKRILHFALEGNALKAIELTEEL 79 (215)
Q Consensus 54 ~~~r~~I~~~I~~G~i~~Ai~~~~~~ 79 (215)
+.....|.++|..||.+.|.+.+..|
T Consensus 195 ~~eH~~I~~Ai~~~D~~~A~~~m~~H 220 (239)
T 2hs5_A 195 LTRNHEIYDALAAGNTEAAGQLLKTY 220 (239)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455666666666666666666555
No 51
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=23.05 E-value=62 Score=22.88 Aligned_cols=24 Identities=17% Similarity=-0.033 Sum_probs=18.6
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHHh
Q 027999 56 MRKRILHFA--LEGNALKAIELTEEL 79 (215)
Q Consensus 56 ~r~~I~~~I--~~G~i~~Ai~~~~~~ 79 (215)
.+..+++++ -+||++.|++|+-..
T Consensus 89 ~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 89 ELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 356788887 468999999998653
No 52
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.04 E-value=1e+02 Score=19.15 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=16.0
Q ss_pred HHHHHHHH-cC--CHHHHHHHHHHhc
Q 027999 58 KRILHFAL-EG--NALKAIELTEELA 80 (215)
Q Consensus 58 ~~I~~~I~-~G--~i~~Ai~~~~~~~ 80 (215)
.+.+.++. .| +.+.|++|+-++-
T Consensus 24 ~~a~~AL~~t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 24 HTALKALAATGRKTAEEALAWLHDHC 49 (64)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 44455553 33 7999999998874
No 53
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=23.02 E-value=2.6e+02 Score=21.43 Aligned_cols=15 Identities=13% Similarity=0.043 Sum_probs=7.6
Q ss_pred HHcCCHHHHHHHHHH
Q 027999 64 ALEGNALKAIELTEE 78 (215)
Q Consensus 64 I~~G~i~~Ai~~~~~ 78 (215)
...|++++|++++.+
T Consensus 199 ~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 199 YQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 344555555555543
No 54
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=22.86 E-value=1.6e+02 Score=19.02 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=37.7
Q ss_pred HHHHHcCCHHHHHHHHHHhcHHHHccCCcchhhhhHHHHHHHHhccchhhHHHHHHHhccccCCch
Q 027999 61 LHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQ 126 (215)
Q Consensus 61 ~~~I~~G~i~~Ai~~~~~~~p~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~~~ 126 (215)
.-....|++++|++++.+.- .+...++.+.+.+ -.-+...|+..+|+.+.++-+.....++
T Consensus 35 ~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l----~~~~~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 35 STFRTLGEYRKAEAVLANGV-KQFPNHQALRVFY----AMVLYNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHH-HhCCCchHHHHHH----HHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 45667899999999987642 1111222333322 2224567899999999987766544343
No 55
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=22.51 E-value=99 Score=18.21 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCC
Q 027999 153 LSLEYRQHVADNLNRAILAHAERPRY 178 (215)
Q Consensus 153 l~~~~r~~la~~vn~~il~~~~~~~~ 178 (215)
.+.++..+++..+..++...+|.|+.
T Consensus 12 ~s~eqk~~l~~~lt~~l~~~lg~~~~ 37 (64)
T 3abf_A 12 RPPEKKRELVRRLTEMASRLLGEPYE 37 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46788899999999999999999853
No 56
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=22.50 E-value=55 Score=28.19 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHh
Q 027999 56 MRKRILHFALEGNALKAIELTEEL 79 (215)
Q Consensus 56 ~r~~I~~~I~~G~i~~Ai~~~~~~ 79 (215)
.-..|+++|+.||++.|+++|-+.
T Consensus 146 ~d~~I~~aLl~Gd~e~AV~~cl~~ 169 (399)
T 2pm7_A 146 IEQTISKNLVSGNIKSAVKNSLEN 169 (399)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 356799999999999999998644
No 57
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=22.45 E-value=50 Score=21.71 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCH
Q 027999 12 AINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNA 69 (215)
Q Consensus 12 ~~~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i 69 (215)
..+++-|++||-+|+.|+|-- .|.+. ..-....+++..+.+|+.
T Consensus 9 ~L~~eTL~nLIeefv~RegtD---------yg~E~-----sL~~kv~qv~~qL~~Gea 52 (78)
T 1y0n_A 9 LLEADTLNNLLEDFVTREGTD---------NGDET-----PLDVRVERARHALRRGEA 52 (78)
T ss_dssp GSCHHHHHHHHHHHHHCC----------------C-----CHHHHHHHHHHHHHTTSE
T ss_pred hCCHHHHHHHHHHHHhccccc---------ccccc-----cHHHHHHHHHHHHHcCCE
Confidence 467889999999999999974 22211 111455788888888863
No 58
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=22.33 E-value=1.2e+02 Score=19.96 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCC
Q 027999 153 LSLEYRQHVADNLNRAILAHAERP 176 (215)
Q Consensus 153 l~~~~r~~la~~vn~~il~~~~~~ 176 (215)
+.+.+|..+|+.|..++..+..-+
T Consensus 49 V~~~qR~~iAe~Fa~AL~~Svk~~ 72 (83)
T 2jpq_A 49 VAASQRKLIAEKFAQALMSSLETP 72 (83)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCC
Confidence 357899999999999999997654
No 59
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=22.14 E-value=86 Score=16.88 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=9.6
Q ss_pred cCCHHHHHHHH
Q 027999 66 EGNALKAIELT 76 (215)
Q Consensus 66 ~G~i~~Ai~~~ 76 (215)
.||++.|++|+
T Consensus 29 ~~n~e~A~~~L 39 (40)
T 1z96_A 29 NGDLDVAASFL 39 (40)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 78999999986
No 60
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=21.75 E-value=85 Score=19.83 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCC
Q 027999 153 LSLEYRQHVADNLNRAILAHAERPRY 178 (215)
Q Consensus 153 l~~~~r~~la~~vn~~il~~~~~~~~ 178 (215)
.+.+++.+++..+..++...+|.|++
T Consensus 12 rs~eqK~~L~~~it~~l~~~lg~p~~ 37 (76)
T 3ej9_A 12 RTDEQKRALSAGLLRVISEATGEPRE 37 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHCcCcc
Confidence 46889999999999999999999864
No 61
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.71 E-value=65 Score=20.86 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=15.9
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHHh
Q 027999 57 RKRILHFA--LEGNALKAIELTEEL 79 (215)
Q Consensus 57 r~~I~~~I--~~G~i~~Ai~~~~~~ 79 (215)
|..++.++ ..||++.|++|+-.+
T Consensus 44 r~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 44 RDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 44544444 468999999998654
No 62
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=21.27 E-value=97 Score=22.65 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=23.7
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCC
Q 027999 152 LLSLEYRQHVADNLNRAILAHAERPR 177 (215)
Q Consensus 152 ll~~~~r~~la~~vn~~il~~~~~~~ 177 (215)
-++++++.+|++.|..++...+|.|+
T Consensus 11 ~~t~eqK~aLa~~It~a~~e~~~vP~ 36 (149)
T 3mf7_A 11 RLTPSAKHAVAKAITDAHRGLTGTQH 36 (149)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTCCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCh
Confidence 46789999999999999999999986
No 63
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=21.11 E-value=79 Score=24.32 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 027999 54 MEMRKRILHFALEGNALKAIELTEEL 79 (215)
Q Consensus 54 ~~~r~~I~~~I~~G~i~~Ai~~~~~~ 79 (215)
......|.++|..||.+.|.+.+.+|
T Consensus 190 ~~~H~~I~~Ai~~~D~~~A~~~m~~H 215 (239)
T 1hw1_A 190 LGFYHKLSALCSEGAHDQVYETVRRY 215 (239)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555666666666666666666655
No 64
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=20.96 E-value=3.2e+02 Score=21.81 Aligned_cols=108 Identities=9% Similarity=0.019 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHH--HhhcHHHHHHHHHHhhC--CCCCCCCHHhH--HHHHHHHHHHHcCCHH------------HHH
Q 027999 12 AINDNDIHNIVLSYL--VHNCYKETVDSFISCTG--MKQPANCLEDM--EMRKRILHFALEGNAL------------KAI 73 (215)
Q Consensus 12 ~~~~~~l~~lI~~yL--~~~Gy~eta~~f~~e~~--~~~~~~~~~~~--~~r~~I~~~I~~G~i~------------~Ai 73 (215)
.+..+.+..+|-+|. +..+..+.|..+.++.. +.....+...+ -..-.++..++.+++. .++
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 466778888888887 77888888877776532 11111112211 1122233333333222 444
Q ss_pred HHHHHhcHHHHccCCcchhhhhHHHHHHHHhccchhhHHHHHHHhcccc
Q 027999 74 ELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPF 122 (215)
Q Consensus 74 ~~~~~~~p~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~ 122 (215)
+.+...... .+..+.+..+-..=+-....|+..+|+.+.++-+.-+
T Consensus 86 ~~i~~~~~~---~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 131 (378)
T 3q15_A 86 ETIETPQKK---LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKEL 131 (378)
T ss_dssp HHHHGGGHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTG
T ss_pred HHHhccCCC---CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 444332111 1122333333333334556788999998887655443
No 65
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=20.86 E-value=91 Score=19.26 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCC
Q 027999 153 LSLEYRQHVADNLNRAILAHAERPRY 178 (215)
Q Consensus 153 l~~~~r~~la~~vn~~il~~~~~~~~ 178 (215)
.+.++..+++..+..++...+|+|+.
T Consensus 12 rs~eqK~~L~~~it~~l~~~lg~p~~ 37 (72)
T 3mb2_A 12 RSTEQKAELARALSAAAAAAFDVPLA 37 (72)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46788999999999999999999863
No 66
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=20.78 E-value=3.3e+02 Score=21.91 Aligned_cols=59 Identities=12% Similarity=-0.006 Sum_probs=32.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhcHHHHccCCcchhhhhHHHHHHHHhccchhhHHHHHHHhc
Q 027999 60 ILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKL 119 (215)
Q Consensus 60 I~~~I~~G~i~~Ai~~~~~~~p~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l 119 (215)
.......|++++|++++.+.-. +...++.....++...-.-+.+.|+..+|+.+.++-+
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMK-TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556678899999888876421 1111222222222222223446678888888777644
No 67
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.36 E-value=62 Score=18.56 Aligned_cols=15 Identities=13% Similarity=-0.106 Sum_probs=11.6
Q ss_pred HcCCHHHHHHHHHHh
Q 027999 65 LEGNALKAIELTEEL 79 (215)
Q Consensus 65 ~~G~i~~Ai~~~~~~ 79 (215)
..|+++.|++|+-.+
T Consensus 32 ~~~n~e~A~~~L~~h 46 (47)
T 2ekk_A 32 NTSTMEQATEYLLTH 46 (47)
T ss_dssp HSCSHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHcC
Confidence 457999999998543
No 68
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=20.10 E-value=2.5e+02 Score=21.55 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh
Q 027999 55 EMRKRILHFALEGNALKAIELTEEL 79 (215)
Q Consensus 55 ~~r~~I~~~I~~G~i~~Ai~~~~~~ 79 (215)
..|+.|-+++..|+.+.|.-.+...
T Consensus 36 ~~RrdIA~LL~~gk~~~AriRvE~i 60 (193)
T 3ggy_A 36 QSRRQVAQLLLTNKEQKAHYRVETL 60 (193)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5789999999999999999887654
Done!