Query 028001
Match_columns 215
No_of_seqs 107 out of 361
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 07:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028001.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028001hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ehbb2 f.17.2.1 (B:1-107) Bac 28.7 26 0.0019 23.9 3.7 17 98-114 80-96 (107)
2 d1v54b2 f.17.2.1 (B:1-90) Mito 25.4 56 0.0041 21.4 4.9 22 94-115 60-81 (90)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 25.1 32 0.0023 23.0 3.6 17 98-114 74-90 (100)
4 d2exna1 b.165.1.1 (A:1-128) Hy 10.5 32 0.0023 24.0 0.4 13 24-36 7-19 (128)
5 d2fm9a1 a.257.1.1 (A:49-263) C 8.8 44 0.0032 25.7 0.7 12 127-138 195-206 (215)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 6.7 30 0.0022 22.9 -1.1 15 99-113 66-80 (91)
7 d1jt6a2 a.121.1.1 (A:73-187) M 5.3 1.7E+02 0.012 19.6 2.3 32 162-193 80-111 (115)
8 d1ekra_ d.58.21.1 (A:) Molybde 3.8 1.7E+02 0.012 21.1 1.4 22 142-163 98-120 (146)
9 d1gjsa_ a.8.1.2 (A:) IgG bindi 3.5 1.1E+02 0.0079 19.1 0.0 19 21-39 42-61 (65)
10 d1dq3a3 d.95.2.2 (A:129-226) P 3.5 2.1E+02 0.015 18.8 1.4 13 145-157 80-92 (98)
No 1
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=28.70 E-value=26 Score=23.88 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=10.5
Q ss_pred HHhHHHHhhhhhhccCC
Q 028001 98 WFIVLPCLVLALLINER 114 (215)
Q Consensus 98 ~~liip~~vla~l~~~~ 114 (215)
.+-++|+++|..+.-|+
T Consensus 80 ~WTviP~lIL~~laipS 96 (107)
T d3ehbb2 80 IWTLVPVLILVAIGAFS 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35577777776665444
No 2
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.39 E-value=56 Score=21.38 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=13.8
Q ss_pred cchhHHhHHHHhhhhhhccCCc
Q 028001 94 TFRHWFIVLPCLVLALLINERF 115 (215)
Q Consensus 94 ~f~~~~liip~~vla~l~~~~~ 115 (215)
..-..+-++|+++|..+--|+.
T Consensus 60 ~lEiiWTiiP~lILi~ia~PSl 81 (90)
T d1v54b2 60 EVETIWTILPAIILILIALPSL 81 (90)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHH
Confidence 3334466888888777655553
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=25.12 E-value=32 Score=22.99 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=11.4
Q ss_pred HHhHHHHhhhhhhccCC
Q 028001 98 WFIVLPCLVLALLINER 114 (215)
Q Consensus 98 ~~liip~~vla~l~~~~ 114 (215)
.+-++|++++..+.-|+
T Consensus 74 iWTviP~lILi~l~~pS 90 (100)
T d3dtub2 74 AWTIVPIVILVAIGAFS 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46688888777665444
No 4
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=10.47 E-value=32 Score=24.00 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=10.0
Q ss_pred hhcccccccccch
Q 028001 24 HTIKSCAGISLKT 36 (215)
Q Consensus 24 ~~~kS~~GlSlkT 36 (215)
+-=|||.|+|+..
T Consensus 7 ~PIKsc~g~~~~~ 19 (128)
T d2exna1 7 QPIAECGATTQSE 19 (128)
T ss_dssp EEETTTEEECCGG
T ss_pred ecccccCCccccc
Confidence 4459999999854
No 5
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=8.81 E-value=44 Score=25.71 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.1
Q ss_pred HHHHHHhhhHHH
Q 028001 127 YLEAVAILPQLV 138 (215)
Q Consensus 127 yLEsvAILPQL~ 138 (215)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T d2fm9a1 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478999999984
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.70 E-value=30 Score=22.85 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=9.6
Q ss_pred HhHHHHhhhhhhccC
Q 028001 99 FIVLPCLVLALLINE 113 (215)
Q Consensus 99 ~liip~~vla~l~~~ 113 (215)
+-++|++++..+.-|
T Consensus 66 WtiIP~iil~~iav~ 80 (91)
T d1fftb2 66 VWTVPILIIIFLAVL 80 (91)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 447788777665433
No 7
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=5.26 E-value=1.7e+02 Score=19.56 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=19.2
Q ss_pred HHHHhhhheeeeecCCcchhHHHHHHHHHHHH
Q 028001 162 ALYILNWIYRYFTEDHYIHWITWIAGLVQTLL 193 (215)
Q Consensus 162 ~ly~~~Wi~~y~~~~~~~~~~~~~~givQt~l 193 (215)
++..+||+..++..++-.+.-.+.-..+|.++
T Consensus 80 il~~lng~~~Wy~~~g~~~~~~la~~~~~l~L 111 (115)
T d1jt6a2 80 AANAVNGIVTFTHEQNINERIKLMNKFSQIFL 111 (115)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 45677888887765432344455566666654
No 8
>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C, MoaC {Escherichia coli [TaxId: 562]}
Probab=3.82 E-value=1.7e+02 Score=21.06 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.4
Q ss_pred hcC-ccchhHHHHHHHHHHHHHH
Q 028001 142 RTR-NIDNLTGQYVFLLGAYRAL 163 (215)
Q Consensus 142 k~~-~ve~~tshYv~~Lg~yR~l 163 (215)
||| |-|.+|+--+++|.+|=-+
T Consensus 98 kTGVEMEALtavsva~LTiYDM~ 120 (146)
T d1ekra_ 98 KTGVEMEALTAASVAALTIYDMC 120 (146)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceehHHHHHHHHHHHHHHHHH
Confidence 566 8999999999999988543
No 9
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=3.54 E-value=1.1e+02 Score=19.13 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=14.7
Q ss_pred HHHhhccccccc-ccchhHH
Q 028001 21 LKIHTIKSCAGI-SLKTQEL 39 (215)
Q Consensus 21 ~Ki~~~kS~~Gl-SlkTQ~l 39 (215)
-.|.+.|++.|+ ++|-|++
T Consensus 42 nlIN~AKTVEGV~aLk~eIl 61 (65)
T d1gjsa_ 42 NLINNAKTVEGVKALIDEIL 61 (65)
T ss_dssp HHHHTCCSHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHH
Confidence 457788899998 7777765
No 10
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=3.47 E-value=2.1e+02 Score=18.81 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.3
Q ss_pred ccchhHHHHHHHH
Q 028001 145 NIDNLTGQYVFLL 157 (215)
Q Consensus 145 ~ve~~tshYv~~L 157 (215)
++.++||||+=.|
T Consensus 80 kar~itshy~~ll 92 (98)
T d1dq3a3 80 KARNITSHYLKLL 92 (98)
T ss_dssp CCHHHHHHHHHHH
T ss_pred eecccHHHHHHHH
Confidence 5788999998654
Done!