Query 028005
Match_columns 215
No_of_seqs 122 out of 1131
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:48:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02724 Molybdenum cofactor s 100.0 2.4E-46 5.2E-51 365.6 19.8 191 3-204 594-803 (805)
2 KOG2362 Uncharacterized Fe-S p 100.0 2.5E-46 5.4E-51 320.7 12.7 189 17-210 137-336 (336)
3 COG3217 Uncharacterized Fe-S p 100.0 8.7E-44 1.9E-48 301.2 16.9 181 14-208 84-266 (270)
4 PF03473 MOSC: MOSC domain; I 100.0 1.7E-30 3.6E-35 202.6 9.0 121 67-203 10-133 (133)
5 PRK14499 molybdenum cofactor b 98.7 1.2E-07 2.7E-12 83.8 9.3 103 76-205 203-307 (308)
6 PF03476 MOSC_N: MOSC N-termin 98.6 2.6E-08 5.7E-13 76.5 4.1 45 1-45 76-120 (120)
7 COG2258 Uncharacterized protei 98.1 2.1E-05 4.6E-10 65.8 8.4 107 77-209 56-165 (210)
8 PRK11536 6-N-hydroxylaminopuri 98.0 5.1E-05 1.1E-09 64.4 10.6 107 76-208 55-167 (223)
9 KOG2142 Molybdenum cofactor su 96.7 0.001 2.2E-08 63.6 2.3 48 99-152 624-671 (728)
10 KOG3347 Predicted nucleotide k 49.5 9.7 0.00021 30.9 1.4 28 99-126 3-40 (176)
11 CHL00112 rpl28 ribosomal prote 37.2 29 0.00063 23.6 2.0 10 98-107 25-34 (63)
12 COG4049 Uncharacterized protei 37.1 14 0.00031 24.6 0.5 28 120-147 5-32 (65)
13 PF11132 SplA: Transcriptional 30.0 39 0.00084 23.7 1.7 19 194-212 5-23 (75)
14 KOG2362 Uncharacterized Fe-S p 29.7 31 0.00067 30.9 1.5 23 16-38 146-168 (336)
15 PF03658 Ub-RnfH: RnfH family 24.9 50 0.0011 23.8 1.6 27 176-205 46-72 (84)
16 KOG2963 RNA-binding protein re 24.1 28 0.0006 31.7 0.2 22 130-151 170-191 (405)
17 TIGR03635 S17_bact 30S ribosom 21.7 86 0.0019 21.7 2.3 15 194-208 48-62 (71)
18 CHL00142 rps17 ribosomal prote 20.2 92 0.002 22.4 2.2 18 191-208 47-64 (84)
19 COG4416 Com Mu-like prophage p 20.1 59 0.0013 21.5 1.1 14 130-143 22-35 (60)
No 1
>PLN02724 Molybdenum cofactor sulfurase
Probab=100.00 E-value=2.4e-46 Score=365.65 Aligned_cols=191 Identities=30% Similarity=0.525 Sum_probs=163.8
Q ss_pred ceEEcCCCCCC--CcccEEEeCcceeeeecchhHHHHHHhhhCCCeEEEEecCCCCCCCCC-----cCcC--CCceeecc
Q 028005 3 ALKISLSKPRD--IADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVD-----PKYA--AGEKIMFS 73 (215)
Q Consensus 3 ~~~vpl~~~~~--~~~~v~v~~~~~~~~d~g~~~~~wlS~~Lg~~~~Lv~~~~~~~~r~~~-----~~~~--~~~~~~f~ 73 (215)
+|+|||.+... ...+|+||++.+.+++||+++++|||+|||++|+|+++.+... |... +.+. .....+|+
T Consensus 594 ~l~v~l~~~~~~~~~~~v~v~~~~~~~~~~g~~~~~w~S~~lg~~~~Lv~~~~~~~-r~~~~~~~~~~~~~~~~~~~~fa 672 (805)
T PLN02724 594 KLEIPLESDSQHEESGEVILCGNRAESMSYGTEINEWFTNALGRRCTLVRKSSSNT-RVCRNRNPSHSPCGDDESRLSFA 672 (805)
T ss_pred cEEEeCCCcccccccceeEEeCCcceeEecchhHHHHHHHHhCCceEEEEeCCccc-ccccccccccccccCcCCceeec
Confidence 68999986542 3468999999999999999999999999999999999977543 3321 1111 22458999
Q ss_pred CCCceEEeehhhHHHHHhHhCC-------CCCcCcccceEEEeCCCCCCCCCcCeEEECceEEEEEEeccCcccceeeCC
Q 028005 74 DCYPFMLLSQGSLDALNKLLKE-------PIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQD 146 (215)
Q Consensus 74 D~~p~~lis~aSl~~l~~~l~~-------~v~~~RFRpNIvv~g~~pf~Ed~W~~l~IG~~~~~~~~~c~RC~~~~vd~~ 146 (215)
|.+||||||++||++||++++. +++++||||||||+|.+||+||.|++|+||++.|++++||.||+||||||+
T Consensus 673 D~~p~llis~aSl~~Ln~~l~~~~~~~~~~v~~~RFRpNiVv~g~~~f~ED~W~~l~IG~~~~~~~~~C~RC~~~tvDp~ 752 (805)
T PLN02724 673 NEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGGEAYAEDEWQSLSIGDAEFTVLGGCNRCQMINIDQE 752 (805)
T ss_pred CCCceEEecHHHHHHHHHHhccccccccCCCcHHHccceEEECCCCCccccCceEEEECCEEEEEecccCCCCCCcCCcc
Confidence 9999999999999999999973 689999999999999999999999999999999999999999999999999
Q ss_pred CCCC--CCChHHHHHHHhcccccCccccCCCccccceeeEEee-cCCCCCEEecCCeEEEe
Q 028005 147 TGVA--GPEPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKD-NLSNGKVLKLGDPVFVM 204 (215)
Q Consensus 147 tG~~--~~epl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~-~~~~G~~I~VGD~V~v~ 204 (215)
||++ +.|||+||++||+ ..+++.||+|++... ....| +|+|||.|++.
T Consensus 753 tg~~~~~~epl~tL~~~R~---------~~~~~~FG~~~~~~~~~~~~~-~i~vGd~v~~~ 803 (805)
T PLN02724 753 TGLVNPSNEPLATLASYRR---------VKGKILFGILLRYEISDKRDQ-WIAVGSRVNPR 803 (805)
T ss_pred cCccCCCCChHHHHHHHhC---------cCCCCCccceeeccccCCCCc-EEEeCCEEEec
Confidence 9986 5799999999996 347789999997731 12557 99999999875
No 2
>KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=2.5e-46 Score=320.68 Aligned_cols=189 Identities=37% Similarity=0.605 Sum_probs=168.0
Q ss_pred cEEEeCcceeeeecchhHHHHHHhhh----------CCCeEEEEecCCCCCCCCCcCcCCCceeeccCCCceEEeehhhH
Q 028005 17 GVSVWEWCGSALAEGAEASNWFTNYL----------GKPSRLVRYNAESETRPVDPKYAAGEKIMFSDCYPFMLLSQGSL 86 (215)
Q Consensus 17 ~v~v~~~~~~~~d~g~~~~~wlS~~L----------g~~~~Lv~~~~~~~~r~~~~~~~~~~~~~f~D~~p~~lis~aSl 86 (215)
....|+....+++||+.++.|||++. +.++++.++......+...|.+.+++..+|.|.+||||+|++||
T Consensus 137 ~t~~~~~~~dg~~cgd~~~~~~s~~~e~~~~~~~~~~~~~~~er~~~~~~~~~~~p~~~~~d~~~f~D~~Pfli~s~aSL 216 (336)
T KOG2362|consen 137 ATLFPDLSADGYDCGDWVASAFSEGIEEPNWRLIFVGKGLYTERTNKPDETWWNNPVPKRGDSTTFSDLAPFLIASQASL 216 (336)
T ss_pred ccccccceeeccccHhhhhhhHHhhhhccchhhhhhcCcceeeecccCCccccCCCccCccccccccccchhhhhchhhH
Confidence 45567777888999988888887766 45678888866656677777777888999999999999999999
Q ss_pred HHHHhHhCCCCCcCcccceEEEeCCCCCCCCCcCeEEECceEEEEEEeccCcccceeeCCCCCCCC-ChHHHHHHHhccc
Q 028005 87 DALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGVAGP-EPSETLRQIRSDK 165 (215)
Q Consensus 87 ~~l~~~l~~~v~~~RFRpNIvv~g~~pf~Ed~W~~l~IG~~~~~~~~~c~RC~~~~vd~~tG~~~~-epl~tL~~~R~~~ 165 (215)
++||.+|+++++++||||||+|+|+.||+||.|.+|+||+++|+.+.+|+||.++||||+||+++. ||+++|++||.++
T Consensus 217 ~dLNt~L~~~V~~~~FRpnI~vdgc~~~~ED~W~ei~Igd~~~~~v~~CtRCiltTV~petG~~~k~qpletLr~fR~~~ 296 (336)
T KOG2362|consen 217 DDLNTRLDKPVPMNNFRPNIVVDGCDAFAEDKWDEIRIGDAEFQCVAPCTRCILTTVDPETGEMSKMQPLETLREFRLDP 296 (336)
T ss_pred HHHHhhhcCCccHhhcccceEEecCccccccccceEEEccEEEEEEeeccceeeeeeccccccccccCchhhHHhhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999875 9999999999986
Q ss_pred ccCccccCCCccccceeeEEeecCCCCCEEecCCeEEEeeecCch
Q 028005 166 VLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMRKVNSA 210 (215)
Q Consensus 166 ~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~~~~~~ 210 (215)
+.+.+...++++||+|+... ++| .|+|||.|+|..+-+++
T Consensus 297 -~~~~~~~~~sp~fGv~~~~~---~~g-~I~vGd~Vyv~~k~~~~ 336 (336)
T KOG2362|consen 297 -GKPRKVHMGSPLFGVYAGLV---NEG-TIKVGDTVYVLYKPSSF 336 (336)
T ss_pred -cccccccCCCcccceeeccc---ccc-eEEeCCEEEEEecCCCC
Confidence 44556678899999999988 899 99999999998876653
No 3
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=8.7e-44 Score=301.17 Aligned_cols=181 Identities=35% Similarity=0.629 Sum_probs=163.0
Q ss_pred CcccEEEeCcceeeeecchhHHHHHHhhhCCCeEEEEecCCCCCCCCCcCcCCCceeeccCCCceEEeehhhHHHHHhHh
Q 028005 14 IADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLL 93 (215)
Q Consensus 14 ~~~~v~v~~~~~~~~d~g~~~~~wlS~~Lg~~~~Lv~~~~~~~~r~~~~~~~~~~~~~f~D~~p~~lis~aSl~~l~~~l 93 (215)
+..+++||++...+...++++++|||.|||++++|+..+.+.. |..... .....+|+|++|+|+++++||++|+++.
T Consensus 84 ~~~~~~vw~~~~~a~~~~~a~~d~lS~flg~~v~L~~~~~~~~-r~v~~~--p~~~~~fadg~p~l~~~~aSl~dL~~r~ 160 (270)
T COG3217 84 QRAPVEVWGDHFTADAAGDAANDWLSGFLGRAVSLRWDGAGFA-RRVKAG--PAVPVTFADGYPILLFNTASLADLRRRV 160 (270)
T ss_pred ccccceeeccccccccchhHHHHHHHhhhceeeEEEecCcccc-ccccCC--CceeeEecCCceEEEEccccHHHHhhhc
Confidence 4568999999999999999999999999999999999976433 322221 3466899999999999999999999999
Q ss_pred CCCCCcCcccceEEEeCCCCCCCCCcCeEEECceEEEEEEeccCcccceeeCCCCCC--CCChHHHHHHHhcccccCccc
Q 028005 94 KEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGVA--GPEPSETLRQIRSDKVLRPNQ 171 (215)
Q Consensus 94 ~~~v~~~RFRpNIvv~g~~pf~Ed~W~~l~IG~~~~~~~~~c~RC~~~~vd~~tG~~--~~epl~tL~~~R~~~~~~~~~ 171 (215)
+..++++|||||||++|.++|.||.|+.|+||++.|.+++||.||.|||+||+||++ ..+|+.+|+++|...
T Consensus 161 ~~~~~merFRpNlvv~ge~a~aEd~w~~i~IG~v~F~~vkPC~RCi~Ttvd~~tGe~~p~~~p~~~~~~~R~~~------ 234 (270)
T COG3217 161 PANLEMERFRPNLVVEGEDAFAEDSWKSIRIGGVRFDVVKPCSRCIFTTVDPDTGERRPGGEPLFTLNRFRTNP------ 234 (270)
T ss_pred cCCCChhhCCCceEEeecccccccCceEEEEccEEEEEeccchhcceeeECCcccccCCCCChhHHHHhhhccc------
Confidence 999999999999999999999999999999999999999999999999999999996 579999999999731
Q ss_pred cCCCccccceeeEEeecCCCCCEEecCCeEEEeeecC
Q 028005 172 KQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMRKVN 208 (215)
Q Consensus 172 ~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~~~~ 208 (215)
..+++.||.|+++. ..| .|++||.|+++..++
T Consensus 235 -d~~~~~FG~n~~a~---~~g-~ir~Gd~ve~l~~~~ 266 (270)
T COG3217 235 -DAGGVLFGQNLIAR---NEG-RIRVGDAVEVLAVGP 266 (270)
T ss_pred -ccCcccccceEEec---cCc-ceecCcceeEEEecc
Confidence 15678999999998 888 899999999999887
No 4
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C.
Probab=99.97 E-value=1.7e-30 Score=202.59 Aligned_cols=121 Identities=40% Similarity=0.585 Sum_probs=93.2
Q ss_pred CceeeccCCCceEEeehhhHHHHHhHhCCCC-CcCcccceEEEeCCCCCCCCCc--CeEEECceEEEEEEeccCccccee
Q 028005 67 GEKIMFSDCYPFMLLSQGSLDALNKLLKEPI-PINRFRPNILVDGCEPFSEDLW--TGIRINNCTFQGVKLCDRCKVPTI 143 (215)
Q Consensus 67 ~~~~~f~D~~p~~lis~aSl~~l~~~l~~~v-~~~RFRpNIvv~g~~pf~Ed~W--~~l~IG~~~~~~~~~c~RC~~~~v 143 (215)
.....|.|.+|++|+|++|+++|+++++... +++||||||+|+|.+||+||.| ++|+||++.|+++.+|.||.|+++
T Consensus 10 ~~~~~~~d~~~v~l~s~~s~~~l~~~~~~~~~~~~rFR~Nivv~g~~~f~Ed~w~~~~l~iG~~~l~v~~~~~rC~~~~~ 89 (133)
T PF03473_consen 10 PYKHHFGDERPVSLISQESLDALNARLGEPGLDPRRFRPNIVVDGLPPFDEDDWCGDRLRIGDAVLEVTQPCPRCVMPNV 89 (133)
T ss_dssp ------GCGGSEEEEECHHHHHHHHHCCCCGGSCCCCT-SEEECS-T---TCCGBTEEEECTTEEEEEEEE----CHHHH
T ss_pred CCcccCCCCCceeeccHHHHHHHHhhhccccCCHhHCCCCEEEeccccccccccceeeeccCCEEEEEEeCcCCCCccce
Confidence 3568899999999999999999999999765 9999999999999999999999 999999999999999999999999
Q ss_pred eCCCCCCCCChHHHHHHHhcccccCccccCCCccccceeeEEeecCCCCCEEecCCeEEE
Q 028005 144 NQDTGVAGPEPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFV 203 (215)
Q Consensus 144 d~~tG~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v 203 (215)
||+||.++.+....+..+- ....+|+|+.+. .+| .|+|||+|+|
T Consensus 90 ~~~tg~~~~~~~~~~~~~~------------~~~~~G~~~~V~---~~G-~I~vGD~V~V 133 (133)
T PF03473_consen 90 DPDTGERDPEGKPLFGQNA------------SPGRRGVYARVI---KGG-TIRVGDEVEV 133 (133)
T ss_dssp HHCHCTCTSTTHHHHHHHH------------CCTSS-EEEEEE---E-E-EEETTSEEEE
T ss_pred eeccCcccchhhhhhhhhe------------ecCCceEEEEec---cCC-EEccCCeEEC
Confidence 9999999877444444432 233799999998 899 9999999986
No 5
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=98.66 E-value=1.2e-07 Score=83.79 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=75.7
Q ss_pred CceEEeehhhHHHHHhHhCCC-CCcCcccceEEEeCCCCCCCCCcCeEEECc-eEEEEEEeccCcccceeeCCCCCCCCC
Q 028005 76 YPFMLLSQGSLDALNKLLKEP-IPINRFRPNILVDGCEPFSEDLWTGIRINN-CTFQGVKLCDRCKVPTINQDTGVAGPE 153 (215)
Q Consensus 76 ~p~~lis~aSl~~l~~~l~~~-v~~~RFRpNIvv~g~~pf~Ed~W~~l~IG~-~~~~~~~~c~RC~~~~vd~~tG~~~~e 153 (215)
.++++++.++++.++ .++.. +++..||.||+++|.....-.-=..|+||+ +.|++..||.+|.-.......+
T Consensus 203 RqVsl~~~E~~~~~~-~~g~~~l~pG~fGENLtv~Gidl~~l~iGdrlrIG~~avLeVt~pr~PC~~~~~~l~~~----- 276 (308)
T PRK14499 203 RQVSLLDISSIKKME-EYGLKGLCFGKFAENITTENLDLQKISLGTKLKIGDNVVLEISQIGKKCHGSGCEIARQ----- 276 (308)
T ss_pred ceEEEcCHHHHHHHH-hcCCcCCCcccccceEEEcCcCHHHCCCCCEEEECCcEEEEEEeCCCCCcCcccchhHh-----
Confidence 578999999999987 44544 889999999999997332211128999999 9999999999997432111100
Q ss_pred hHHHHHHHhcccccCccccCCCccccceeeEEeecCCCCCEEecCCeEEEee
Q 028005 154 PSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMR 205 (215)
Q Consensus 154 pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~ 205 (215)
.+. ..-+.-|+|+.+. ++| .|++||.|.+++
T Consensus 277 -------~~~----------~~~~r~G~y~RVl---~~G-~Ir~GD~V~l~~ 307 (308)
T PRK14499 277 -------VGV----------CIMPKEGLFAKVL---KGG-KIKPGDIIEILN 307 (308)
T ss_pred -------cCc----------cCcccceEEEEEe---cCe-EEcCCCEEEEcc
Confidence 000 0112369999999 999 999999999874
No 6
>PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO). The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.; PDB: 2EXN_A.
Probab=98.64 E-value=2.6e-08 Score=76.47 Aligned_cols=45 Identities=38% Similarity=0.674 Sum_probs=33.9
Q ss_pred CCceEEcCCCCCCCcccEEEeCcceeeeecchhHHHHHHhhhCCC
Q 028005 1 MQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYLGKP 45 (215)
Q Consensus 1 m~~~~vpl~~~~~~~~~v~v~~~~~~~~d~g~~~~~wlS~~Lg~~ 45 (215)
|+++++|+.........+++|++.+.+++||+++++|||++||+|
T Consensus 76 ~~~l~i~~~~~~~~~~~v~v~~~~~~~~~~gd~~~~WfS~~Lg~p 120 (120)
T PF03476_consen 76 MPPLEIPLPDSTGPRTEVQVWGDTVEAYDCGDEASEWFSEFLGRP 120 (120)
T ss_dssp S-EEEEESSSS-S-EEEEEETTEEEEEEE--HHHHHHHHHHT---
T ss_pred CceEEEEcccccCCEeeEEEECCEeEEEECCHHHHHHHHHHHCcC
Confidence 578899998555667899999999999999999999999999986
No 7
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=2.1e-05 Score=65.84 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=84.7
Q ss_pred ceEEeehhhHHHHHhHhCCCCCcCcccceEEEeCCCCCCCCCc---CeEEECceEEEEEEeccCcccceeeCCCCCCCCC
Q 028005 77 PFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLW---TGIRINNCTFQGVKLCDRCKVPTINQDTGVAGPE 153 (215)
Q Consensus 77 p~~lis~aSl~~l~~~l~~~v~~~RFRpNIvv~g~~pf~Ed~W---~~l~IG~~~~~~~~~c~RC~~~~vd~~tG~~~~e 153 (215)
.+.+.+.+.+......++..+.+-=|+=||.++|. .|..- .+++||++.|++..|+..|.-.+.-.+ .++
T Consensus 56 Av~~y~~ehy~~w~~~lg~~l~pg~fGENltt~Gl---~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~~----~~~ 128 (210)
T COG2258 56 AVCHYPREHYAAWETLLGRGLQPGAFGENLTTSGL---DEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRFG----IPD 128 (210)
T ss_pred eEEEccHHHHHHHHHHhCCCCCcccccCceeecCc---chhhccccCEEEeccEEEEecCCCCchHHHHHhcC----Ccc
Confidence 56688999999999999999889999999999996 45555 799999999999999999987755332 122
Q ss_pred hHHHHHHHhcccccCccccCCCccccceeeEEeecCCCCCEEecCCeEEEeeecCc
Q 028005 154 PSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMRKVNS 209 (215)
Q Consensus 154 pl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~~~~~ 209 (215)
..+.+. ....-|.|+.|. .+| .|+.||++.++++.++
T Consensus 129 ~~~~~~---------------~~G~~G~y~RVL---~~G-~v~~gD~l~l~~r~~~ 165 (210)
T COG2258 129 LAKRFQ---------------QTGRTGWYARVL---EEG-KVRAGDPLKLIPRPSP 165 (210)
T ss_pred HHHHhh---------------ccCcccEEEEEc---ccc-eecCCCceEEecCCCC
Confidence 222222 122679999999 899 9999999999987653
No 8
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=98.05 E-value=5.1e-05 Score=64.36 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=81.9
Q ss_pred CceEEeehhhHHHHHhHhCC---CCCcCcccceEEEeCCCCCCCCCc---CeEEECceEEEEEEeccCcccceeeCCCCC
Q 028005 76 YPFMLLSQGSLDALNKLLKE---PIPINRFRPNILVDGCEPFSEDLW---TGIRINNCTFQGVKLCDRCKVPTINQDTGV 149 (215)
Q Consensus 76 ~p~~lis~aSl~~l~~~l~~---~v~~~RFRpNIvv~g~~pf~Ed~W---~~l~IG~~~~~~~~~c~RC~~~~vd~~tG~ 149 (215)
-.+++.+.++.+..++.++. .+..--|==||.++|. +|++- ..++||++.|++..|+..|--.+. ..|.
T Consensus 55 kAV~~y~~e~y~~w~~~~~~~~~~l~~G~fGENLtv~Gl---~e~~v~IGD~~riG~avleVsqpR~PC~kl~~--r~~~ 129 (223)
T PRK11536 55 RALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGL---TESNVFIGDIFRWGEALIQVTQPRSPCYKLNY--HFDI 129 (223)
T ss_pred ceEEEcCHhHHHHHHHHccccccccCCCCccCCEEecCc---ChhhCCccCEEEECCEEEEEecCCCCCCchhh--hccc
Confidence 46789999999999988854 3556689999999985 66666 899999999999999999954433 3332
Q ss_pred CCCChHHHHHHHhcccccCccccCCCccccceeeEEeecCCCCCEEecCCeEEEeeecC
Q 028005 150 AGPEPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMRKVN 208 (215)
Q Consensus 150 ~~~epl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~~~~ 208 (215)
++..+.+.+. ..-|+|+.|. ++| .|+.||+|.++++.+
T Consensus 130 --~~~~~~~~~~---------------g~~G~Y~RVL---~~G-~V~~GD~v~l~~r~~ 167 (223)
T PRK11536 130 --SDIAQLMQNS---------------GKCGWLYRVI---APG-KVSADAPLELVSRVS 167 (223)
T ss_pred --hhHHHHHHhh---------------CCcEEEEEEE---CCc-EEcCCCEEEEEeCCC
Confidence 2233333321 1459999999 999 999999999999863
No 9
>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]
Probab=96.66 E-value=0.001 Score=63.62 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=43.4
Q ss_pred cCcccceEEEeCCCCCCCCCcCeEEECceEEEEEEeccCcccceeeCCCCCCCC
Q 028005 99 INRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGVAGP 152 (215)
Q Consensus 99 ~~RFRpNIvv~g~~pf~Ed~W~~l~IG~~~~~~~~~c~RC~~~~vd~~tG~~~~ 152 (215)
..|||.||+|++..+|+|-.|..+-||..+|.. ||.| ++||.+|.+..
T Consensus 624 ~~~fr~p~IV~~lae~E~isl~~~~l~~iri~d--p~~r----~~dq~~~~r~~ 671 (728)
T KOG2142|consen 624 SKRFRAPIIVNKLAEREEISLGELSLGHIRIQD--PCHR----DIDQLLGQRRG 671 (728)
T ss_pred hccccchhhhcchhhhhcccccceeeeeeEEec--Ccch----hhhHHhhhhcc
Confidence 589999999999999999999999999999988 8999 68899888743
No 10
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=49.46 E-value=9.7 Score=30.87 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=19.7
Q ss_pred cCcccceEEEeCCCC-----CC-----CCCcCeEEECc
Q 028005 99 INRFRPNILVDGCEP-----FS-----EDLWTGIRINN 126 (215)
Q Consensus 99 ~~RFRpNIvv~g~~p-----f~-----Ed~W~~l~IG~ 126 (215)
++|-||||+|.|.|. +. .-..+.|-||+
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd 40 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISD 40 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhh
Confidence 569999999998642 22 23557788887
No 11
>CHL00112 rpl28 ribosomal protein L28; Provisional
Probab=37.19 E-value=29 Score=23.57 Aligned_cols=10 Identities=10% Similarity=-0.001 Sum_probs=8.4
Q ss_pred CcCcccceEE
Q 028005 98 PINRFRPNIL 107 (215)
Q Consensus 98 ~~~RFRpNIv 107 (215)
.-++|+|||-
T Consensus 25 TkR~f~pNLq 34 (63)
T CHL00112 25 TKKLQKVNLQ 34 (63)
T ss_pred cCceeccccc
Confidence 4799999994
No 12
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=37.12 E-value=14 Score=24.62 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=18.2
Q ss_pred CeEEECceEEEEEEeccCcccceeeCCC
Q 028005 120 TGIRINNCTFQGVKLCDRCKVPTINQDT 147 (215)
Q Consensus 120 ~~l~IG~~~~~~~~~c~RC~~~~vd~~t 147 (215)
+.++|-+-.=+....||||.|+-.++..
T Consensus 5 KA~Kv~~RDGE~~lrCPRC~~~FR~~K~ 32 (65)
T COG4049 5 KAIKVRDRDGEEFLRCPRCGMVFRRRKD 32 (65)
T ss_pred eeeEeeccCCceeeeCCchhHHHHHhHH
Confidence 3445543333456689999999877653
No 13
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=30.01 E-value=39 Score=23.73 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.8
Q ss_pred EEecCCeEEEeeecCchhh
Q 028005 194 VLKLGDPVFVMRKVNSAAE 212 (215)
Q Consensus 194 ~I~VGD~V~v~~~~~~~~~ 212 (215)
..+.||.|+|..|.|-++.
T Consensus 5 ~~~~GD~VyViYrNPHt~~ 23 (75)
T PF11132_consen 5 PYHAGDIVYVIYRNPHTQD 23 (75)
T ss_pred ccCCCCEEEEEEcCCCCcc
Confidence 5789999999999887654
No 14
>KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only]
Probab=29.69 E-value=31 Score=30.88 Aligned_cols=23 Identities=43% Similarity=0.869 Sum_probs=10.8
Q ss_pred ccEEEeCcceeeeecchhHHHHH
Q 028005 16 DGVSVWEWCGSALAEGAEASNWF 38 (215)
Q Consensus 16 ~~v~v~~~~~~~~d~g~~~~~wl 38 (215)
....+|.....+.+.+.+...|+
T Consensus 146 dg~~cgd~~~~~~s~~~e~~~~~ 168 (336)
T KOG2362|consen 146 DGYDCGDWVASAFSEGIEEPNWR 168 (336)
T ss_pred eccccHhhhhhhHHhhhhccchh
Confidence 34444444444455554444443
No 15
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=24.92 E-value=50 Score=23.76 Aligned_cols=27 Identities=30% Similarity=0.155 Sum_probs=15.2
Q ss_pred ccccceeeEEeecCCCCCEEecCCeEEEee
Q 028005 176 KIYFGQNLVWKDNLSNGKVLKLGDPVFVMR 205 (215)
Q Consensus 176 ~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~ 205 (215)
...+|+|.... +....++-||.|++-.
T Consensus 46 ~~~vGIfGk~~---~~d~~L~~GDRVEIYR 72 (84)
T PF03658_consen 46 KNKVGIFGKLV---KLDTVLRDGDRVEIYR 72 (84)
T ss_dssp TSEEEEEE-S-----TT-B--TT-EEEEE-
T ss_pred cceeeeeeeEc---CCCCcCCCCCEEEEec
Confidence 34678888876 6677999999999964
No 16
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=24.11 E-value=28 Score=31.70 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=18.4
Q ss_pred EEEEeccCcccceeeCCCCCCC
Q 028005 130 QGVKLCDRCKVPTINQDTGVAG 151 (215)
Q Consensus 130 ~~~~~c~RC~~~~vd~~tG~~~ 151 (215)
.....|.||.+++.|++||+.+
T Consensus 170 vnlntikRcllinyn~dt~eId 191 (405)
T KOG2963|consen 170 VNLNTIKRCLLINYNRDTGEID 191 (405)
T ss_pred eeccceeEEEEEecCCCCCeee
Confidence 3456789999999999999864
No 17
>TIGR03635 S17_bact 30S ribosomal protein S17. This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17.
Probab=21.75 E-value=86 Score=21.70 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=13.2
Q ss_pred EEecCCeEEEeeecC
Q 028005 194 VLKLGDPVFVMRKVN 208 (215)
Q Consensus 194 ~I~VGD~V~v~~~~~ 208 (215)
..++||.|.+.+.+|
T Consensus 48 ~~k~GD~V~I~ecrP 62 (71)
T TIGR03635 48 ECKVGDVVRIIETRP 62 (71)
T ss_pred CCCCCCEEEEEEcCC
Confidence 799999999998765
No 18
>CHL00142 rps17 ribosomal protein S17; Validated
Probab=20.19 E-value=92 Score=22.36 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=14.3
Q ss_pred CCCEEecCCeEEEeeecC
Q 028005 191 NGKVLKLGDPVFVMRKVN 208 (215)
Q Consensus 191 ~G~~I~VGD~V~v~~~~~ 208 (215)
+....++||.|.+.+.+|
T Consensus 47 e~n~~~~GD~V~I~e~RP 64 (84)
T CHL00142 47 EENECNIGDQVLIEETRP 64 (84)
T ss_pred CCCCCCCCCEEEEEEcCC
Confidence 333799999999988665
No 19
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=20.06 E-value=59 Score=21.53 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=10.3
Q ss_pred EEEEeccCccccee
Q 028005 130 QGVKLCDRCKVPTI 143 (215)
Q Consensus 130 ~~~~~c~RC~~~~v 143 (215)
.+...||||..++-
T Consensus 22 yle~KCPrCK~vN~ 35 (60)
T COG4416 22 YLEKKCPRCKEVNE 35 (60)
T ss_pred eeeecCCccceeee
Confidence 34568999998753
Done!