Query 028005
Match_columns 215
No_of_seqs 122 out of 1131
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:13:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oru_A YUAD protein; structura 99.7 2.6E-17 8.8E-22 135.4 10.9 119 73-209 64-187 (195)
2 1o65_A Hypothetical protein YI 99.3 5.2E-12 1.8E-16 107.2 11.1 106 76-206 67-177 (246)
3 2exn_A Hypothetical protein BO 99.2 3.8E-11 1.3E-15 93.2 7.9 61 1-62 64-127 (136)
4 2bti_A Carbon storage regulato 20.9 81 0.0028 20.5 2.9 15 190-204 9-23 (63)
5 1qd7_I S17 ribosomal protein; 19.3 60 0.0021 22.6 2.1 15 194-208 49-63 (89)
6 1t3o_A Carbon storage regulato 17.9 86 0.0029 22.1 2.7 24 178-204 19-42 (95)
7 3lyd_A Uncharacterized protein 17.6 40 0.0014 26.0 1.0 12 98-109 45-56 (161)
8 2gdl_A Myeloid antimicrobial p 16.2 36 0.0012 18.4 0.3 10 99-108 14-23 (31)
9 1mhx_A Immunoglobulin-binding 15.6 79 0.0027 20.1 1.8 20 194-213 15-34 (65)
10 2b3g_B Cellular tumor antigen 15.2 58 0.002 17.3 0.9 11 31-41 15-25 (28)
No 1
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=99.72 E-value=2.6e-17 Score=135.45 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=95.3
Q ss_pred cCCCceEEeehhhHHHHHhHhCCC-CCcCcccceEEEeCC-CCCCCCCcCeEEECc-eEEEEEEeccCcccc--eeeCCC
Q 028005 73 SDCYPFMLLSQGSLDALNKLLKEP-IPINRFRPNILVDGC-EPFSEDLWTGIRINN-CTFQGVKLCDRCKVP--TINQDT 147 (215)
Q Consensus 73 ~D~~p~~lis~aSl~~l~~~l~~~-v~~~RFRpNIvv~g~-~pf~Ed~W~~l~IG~-~~~~~~~~c~RC~~~--~vd~~t 147 (215)
.|..+++|++.+|+++++++++.+ +++.+||+||+++|. ..++++-|+.|+||+ +.|++..+|.||..+ ++++.+
T Consensus 64 ~~~r~V~l~~~e~~~~~~~~~g~~~l~~g~fgeNl~v~Gi~~~~~l~iG~~l~iG~~a~leVt~~~~pC~~~~~~i~~~~ 143 (195)
T 1oru_A 64 FNRRQISIVSIEECNEIALKMGVPRILPEWLGANVAVSGMPDLTSLKEGSRIIFPSGAALLCEGENDPCIQPGEVIQSYY 143 (195)
T ss_dssp ECCCCEEEEEHHHHHHHHHHHTCSCCCGGGGTCSEEEESCTTGGGCCTTCEEECTTSCEEEEEEECCCCHHHHHHHHHHS
T ss_pred CCCceEEECCHHHHHHHHHHcCCCCCCcccccCCEEEeCCCChhhCCCCCEEEECCCEEEEEeeccCCCCCCccccchhc
Confidence 446889999999999999998876 999999999999998 555666679999997 999999999999985 566554
Q ss_pred CCCCCChHHHHHHHhcccccCccccCCCccccceeeEEeecCCCCCEEecCCeEEEeeecCc
Q 028005 148 GVAGPEPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMRKVNS 209 (215)
Q Consensus 148 G~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~~~~~ 209 (215)
+. .+...+.+.... ...+|+|+.|. ++| .|++||.|+++.+..+
T Consensus 144 ~~-~~g~~~~~~~~~-------------~~r~G~~~rVl---~~G-~I~~GD~v~l~~~~~~ 187 (195)
T 1oru_A 144 PD-QPKLASAFVRHA-------------LGIRGIVCIVE---RPG-AVYTGDEIEVHSYQRK 187 (195)
T ss_dssp TT-STTHHHHHHHHS-------------TTSSCEEEEEE---ECE-EEETTCEEEEEEEC--
T ss_pred cc-ccchHHHHHhhc-------------cCCccEEEEEe---cCc-eEcCCCEEEEEeCCCC
Confidence 21 233555555431 13699999999 899 9999999999977543
No 2
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Probab=99.34 E-value=5.2e-12 Score=107.17 Aligned_cols=106 Identities=10% Similarity=0.113 Sum_probs=88.0
Q ss_pred CceEEeehhhHHHHHhHhCC---CCCcCcccceEEEeCCCCCCCCCc--CeEEECceEEEEEEeccCcccceeeCCCCCC
Q 028005 76 YPFMLLSQGSLDALNKLLKE---PIPINRFRPNILVDGCEPFSEDLW--TGIRINNCTFQGVKLCDRCKVPTINQDTGVA 150 (215)
Q Consensus 76 ~p~~lis~aSl~~l~~~l~~---~v~~~RFRpNIvv~g~~pf~Ed~W--~~l~IG~~~~~~~~~c~RC~~~~vd~~tG~~ 150 (215)
-++++++.+|++.+++.++. .+++.+||-||+++|.. .++-| +.++||++.|++..+|.+|.-.+.. +|..
T Consensus 67 rqV~l~~~E~~~~~~~~~g~~~~~l~pg~fgENLtv~Gl~--~~~l~iG~rlrIG~avLeVTq~r~PC~~~~~~--~g~~ 142 (246)
T 1o65_A 67 RALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLT--ESNVYMGDIFRWGEALIQVSQPRSPCYKLNYH--FDIS 142 (246)
T ss_dssp GSEEEEETHHHHHHHHHCGGGGGGCSTTTTCCSEEESSCC--TTTCBTTCEEEETTEEEEEEEECCCCTHHHHH--TTCT
T ss_pred CeEEECCHHHHHHHHHHhCCCcccCCcccccCCEEECCcc--hhhCCCCCEEEECCEEEEEEeCcCccHhHHHH--hcCc
Confidence 56899999999999988765 48999999999999974 34446 8999999999999999999987765 3432
Q ss_pred CCChHHHHHHHhcccccCccccCCCccccceeeEEeecCCCCCEEecCCeEEEeee
Q 028005 151 GPEPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVMRK 206 (215)
Q Consensus 151 ~~epl~tL~~~R~~~~~~~~~~~~~~~~fG~~~~v~~~~~~G~~I~VGD~V~v~~~ 206 (215)
...+.|.+. ...|+|+.|. ++| .|++||.|.++++
T Consensus 143 --~~~~~~~~~---------------~r~G~y~rVl---~~G-~V~~GD~v~l~~r 177 (246)
T 1o65_A 143 --DIAQLMQNT---------------GKVGWLYSVI---APG-KVSADAPLELVSR 177 (246)
T ss_dssp --THHHHHHHH---------------TCCCEEEEEE---ECE-EEETTSCEEEEEC
T ss_pred --CHHHHHhhC---------------CCcEEEEEEe---eCc-EEcCCCEEEEecC
Confidence 455555442 2689999999 899 9999999999987
No 3
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=99.20 E-value=3.8e-11 Score=93.16 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=51.5
Q ss_pred CCceEEcCCCCC---CCcccEEEeCcceeeeecchhHHHHHHhhhCCCeEEEEecCCCCCCCCCc
Q 028005 1 MQALKISLSKPR---DIADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVDP 62 (215)
Q Consensus 1 m~~~~vpl~~~~---~~~~~v~v~~~~~~~~d~g~~~~~wlS~~Lg~~~~Lv~~~~~~~~r~~~~ 62 (215)
|++|+|||.+.. ....+++||++.++++|||+++++|||+|||.+++|+++.++.. |..++
T Consensus 64 ~~~l~vpl~~~~~~~~~~~~v~vw~~~~~a~d~g~~~~~W~S~~Lg~p~rLv~~~~~~~-R~~~~ 127 (136)
T 2exn_A 64 MLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMA-EVRWP 127 (136)
T ss_dssp SCEEEEESSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSSEEEEEECTTTC-CCCCC
T ss_pred CceEEEECCCccccccCceeEEEeCCcceeEeccHHHHHHHHHHhCCCeEEEEcCCCCc-cccCc
Confidence 678999997664 14568999999999999999999999999999999999987654 54444
No 4
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=20.93 E-value=81 Score=20.48 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=12.0
Q ss_pred CCCCEEecCCeEEEe
Q 028005 190 SNGKVLKLGDPVFVM 204 (215)
Q Consensus 190 ~~G~~I~VGD~V~v~ 204 (215)
+.|..|.+||.|.+.
T Consensus 9 k~GE~I~Igd~I~I~ 23 (63)
T 2bti_A 9 RVGETLMIGDEVTVT 23 (63)
T ss_dssp ETTCEEEETTTEEEE
T ss_pred cCCCeEEeCCCEEEE
Confidence 677789999988664
No 5
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=19.26 E-value=60 Score=22.55 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=13.1
Q ss_pred EEecCCeEEEeeecC
Q 028005 194 VLKLGDPVFVMRKVN 208 (215)
Q Consensus 194 ~I~VGD~V~v~~~~~ 208 (215)
...+||.|.+.+.+|
T Consensus 49 ~~k~GD~V~I~E~RP 63 (89)
T 1qd7_I 49 EAKVGDIVKIMETRP 63 (89)
T ss_pred CCCCCCEEEEEEccc
Confidence 799999999988765
No 6
>1t3o_A Carbon storage regulator; CSRA, CSRB, CSRC, mostly beta strands, RNA binding protein, beta sheet surface; NMR {Bacillus subtilis}
Probab=17.95 E-value=86 Score=22.09 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=17.8
Q ss_pred ccceeeEEeecCCCCCEEecCCeEEEe
Q 028005 178 YFGQNLVWKDNLSNGKVLKLGDPVFVM 204 (215)
Q Consensus 178 ~fG~~~~v~~~~~~G~~I~VGD~V~v~ 204 (215)
.++|...-. +.|..|.+||.|.|.
T Consensus 19 ~~~MLVLtR---K~GEsI~IGddI~It 42 (95)
T 1t3o_A 19 GRHMLVLSR---KINEAIQIGADIEVK 42 (95)
T ss_dssp CCEEEEEEC---TTCCCEEETTTEEEC
T ss_pred cceeEEEEc---cCCCeEEECCCEEEE
Confidence 456655554 888899999998774
No 7
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=17.62 E-value=40 Score=26.04 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=9.8
Q ss_pred CcCcccceEEEe
Q 028005 98 PINRFRPNILVD 109 (215)
Q Consensus 98 ~~~RFRpNIvv~ 109 (215)
-..-||||+||.
T Consensus 45 ~~~~F~pN~vVt 56 (161)
T 3lyd_A 45 PPQGFTPNIIGT 56 (161)
T ss_dssp CCSSSCCEEEEE
T ss_pred CCCCccccEEEE
Confidence 356799999986
No 8
>2gdl_A Myeloid antimicrobial peptide 27; cathelicidin, alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=16.22 E-value=36 Score=18.41 Aligned_cols=10 Identities=50% Similarity=1.132 Sum_probs=7.6
Q ss_pred cCcccceEEE
Q 028005 99 INRFRPNILV 108 (215)
Q Consensus 99 ~~RFRpNIvv 108 (215)
++||||.+-|
T Consensus 14 irrfrpkvti 23 (31)
T 2gdl_A 14 IRRFRPKVTI 23 (31)
T ss_dssp CCCCTTCCHH
T ss_pred HHhcCCceEE
Confidence 6899997643
No 9
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=15.61 E-value=79 Score=20.13 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=15.0
Q ss_pred EEecCCeEEEeeecCchhhh
Q 028005 194 VLKLGDPVFVMRKVNSAAEA 213 (215)
Q Consensus 194 ~I~VGD~V~v~~~~~~~~~~ 213 (215)
.|-+||.|.|..+...+++.
T Consensus 15 fivigdrvvvt~tkavdaat 34 (65)
T 1mhx_A 15 FIVIGDRVVVVTTEAVDAAT 34 (65)
T ss_dssp EEEETTEEEEEEEEESSHHH
T ss_pred EEEEcCEEEEEEeehhhHHH
Confidence 57899999998766665553
No 10
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=15.20 E-value=58 Score=17.32 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=8.2
Q ss_pred chhHHHHHHhh
Q 028005 31 GAEASNWFTNY 41 (215)
Q Consensus 31 g~~~~~wlS~~ 41 (215)
.+.+.+|||+-
T Consensus 15 pddi~qw~s~d 25 (28)
T 2b3g_B 15 PDDIEQWFTED 25 (28)
T ss_dssp HHHHHHHHHC-
T ss_pred hHHHHHHhhcC
Confidence 46789999863
Done!