BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028006
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 124/216 (57%), Gaps = 3/216 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
MK KALLD+Y E + +A+ GR Y + YAK M L Y EAKW + Y P+F+E+
Sbjct: 341 MKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEF 400
Query: 61 KSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFE 120
K+ AL + G LA+ SFV +GD I T + F+ + K ++A+ I R MDD+A +KF+
Sbjct: 401 KANALPTCGYAMLAITSFVGMGD-IVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFK 459
Query: 121 QKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYF 180
+R + SA+ECY ++GV+ ++WKD+N+E L PT +P +L R L
Sbjct: 460 HRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNL 519
Query: 181 ARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 215
AR +Y +G D YT+ K + LL EP+A+
Sbjct: 520 ARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
MK KA+LD+Y++ E+EL+ GRS+ + +A + M+E++ Y E+ W +GY P EY
Sbjct: 335 MKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEY 394
Query: 61 KSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFE 120
S AL + LA S+ LG AT+ +FE + KN K L+A+ I R++DD A Y+ E
Sbjct: 395 LSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVE 452
Query: 121 QKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYF 180
+ RG + +EC +G+S +WKDINE LL PT V L +L
Sbjct: 453 KSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNL 512
Query: 181 ARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 215
AR Y D YTH ++K + LL + + I
Sbjct: 513 ARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
MK KA+LD+Y++ E+EL+ GRS+ + +A + M+E++ Y E+ W +GY P EY
Sbjct: 335 MKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEY 394
Query: 61 KSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFE 120
S AL + LA S+ LG AT+ +FE + KN K L+A+ I R++DD A Y+ E
Sbjct: 395 LSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVE 452
Query: 121 QKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYF 180
+ RG + +EC +G+S +WKDINE LL PT V L +L
Sbjct: 453 KSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNL 512
Query: 181 ARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 215
AR Y D YTH ++K + LL + + I
Sbjct: 513 ARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
MK KA+LD+Y++ E+EL+ GRS+ + +A + M+E++ Y E+ W +GY P EY
Sbjct: 335 MKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEY 394
Query: 61 KSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFE 120
S AL + LA S+ LG AT+ +FE + KN K L+A+ I R++DD A Y+ E
Sbjct: 395 LSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVE 452
Query: 121 QKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYF 180
+ RG + +EC +G+S +WKDINE LL PT V L +L
Sbjct: 453 KSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNL 512
Query: 181 ARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 215
AR Y D YTH ++K + LL + + I
Sbjct: 513 ARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
MK KA+LD+Y++ E+EL+ GRS+ + +A + M+E++ Y E+ W +GY P EY
Sbjct: 322 MKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEY 381
Query: 61 KSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFE 120
S AL + LA S+ LG AT+ +FE + KN K L+A+ I R++DD A Y+ E
Sbjct: 382 LSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVE 439
Query: 121 QKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYF 180
+ RG + +EC +G+S +WKDINE LL PT V L +L
Sbjct: 440 KSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNL 499
Query: 181 ARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 215
AR Y D YTH ++K + LL + + I
Sbjct: 500 ARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 535
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
MK KA+LD+Y++ E+EL+ GRS+ + +A + M+E++ Y E+ W +GY P EY
Sbjct: 337 MKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEY 396
Query: 61 KSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFE 120
S AL + LA S+ LG AT+ +FE + KN K L+A+ I R++DD A Y+ E
Sbjct: 397 LSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVE 454
Query: 121 QKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYF 180
+ RG + +EC +G+S +WKDINE LL PT V L +L
Sbjct: 455 KSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNL 514
Query: 181 ARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 215
AR Y D YTH ++K + LL + + I
Sbjct: 515 ARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
MK KA+LD+Y++ E+EL+ GRS+ + +A + M+E++ Y E+ W +GY P EY
Sbjct: 337 MKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEY 396
Query: 61 KSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFE 120
S AL + LA S+ LG AT+ +FE + KN K L+A+ I R++DD A Y+ E
Sbjct: 397 LSNALATTTYYLLATTSY--LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVE 454
Query: 121 QKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYF 180
+ RG + +EC +G+S +WKDINE LL PT V L +L
Sbjct: 455 KSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNL 514
Query: 181 ARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 215
AR Y D YTH ++K + LL + + I
Sbjct: 515 ARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
MK KA+LD+Y++ E+EL+ GRS+ + +A + M+E++ Y E+ W +GY P EY
Sbjct: 335 MKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEY 394
Query: 61 KSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFE 120
S AL + LA S+ LG AT+ +FE + KN K L+A+ I R++DD A Y+ E
Sbjct: 395 LSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVE 452
Query: 121 QKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYF 180
+ RG + +EC +G+S +WKDINE LL PT V L +L
Sbjct: 453 KSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNL 512
Query: 181 ARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 215
AR Y D YTH ++K + LL + + I
Sbjct: 513 ARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
MK KA+LD+Y++ E+EL+ GRS+ + +A + M+E++ Y E+ W +GY P EY
Sbjct: 335 MKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEY 394
Query: 61 KSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFE 120
S AL + LA S+ LG AT+ +FE + KN K L+A+ I R++DD A Y+ E
Sbjct: 395 LSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVE 452
Query: 121 QKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYF 180
+ RG + +EC +G+S +WKDINE LL PT V L +L
Sbjct: 453 KSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNL 512
Query: 181 ARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 215
AR Y D YTH ++K + LL + + I
Sbjct: 513 ARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
MK KA+LD+Y++ E+EL+ GRS+ + +A + M+E++ Y E+ W +GY P EY
Sbjct: 335 MKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEY 394
Query: 61 KSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFE 120
S AL + LA S+ LG AT+ +FE + KN K L+A+ I R++DD A Y+ E
Sbjct: 395 LSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVE 452
Query: 121 QKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYF 180
+ RG + +EC +G+S +WKDINE LL PT V L +L
Sbjct: 453 KSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNL 512
Query: 181 ARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 215
AR Y D YTH ++K + LL + + I
Sbjct: 513 ARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 3/218 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
MK + DI E E KE + + ++ ++ ++ Y+ EA+WL YVPT DEY
Sbjct: 600 MKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEY 659
Query: 61 KSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSL--KATETIGRLMDDIAGYK 118
+ SIG R L ++ + + + +++ E + + + + I RL DD YK
Sbjct: 660 IKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYK 719
Query: 119 FEQKRGHNPSAVECYKNQHG-VSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRL 177
E+ RG S++ECY H + + K++ E L P VP + L
Sbjct: 720 AEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFACKKML 779
Query: 178 LYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI 215
R I+ DG L +K + L EPL +
Sbjct: 780 FEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 3/214 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
MK AL + E + K+ +PY + +L + EAKWLY PTFD+Y
Sbjct: 339 MKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDY 398
Query: 61 KSVALRSI-GLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKF 119
A +S G L A F + + K+ E + K + I RL +D+A
Sbjct: 399 FGNAWKSSSGPLQLIFAYFAVVQNI--KKEEIENLQKYHDIISRPSHIFRLCNDLASASA 456
Query: 120 EQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLY 179
E RG ++V CY G+S +WK +N+E L + P ++ +
Sbjct: 457 EIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAIN 516
Query: 180 FARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPL 213
AR H Y +G + + +++V ++TEP+
Sbjct: 517 LARQSHCTYHNGDAHTSPDELTRKRVLSVITEPI 550
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 81/201 (40%)
Query: 14 EAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTL 73
+A ++ KE + + Y ++ + +L+ YF EAKW + GY P+ DEY ++A S+ +
Sbjct: 349 DAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAI 408
Query: 74 AVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECY 133
++ + + + + L I RL DD+ FE RG P ++CY
Sbjct: 409 ISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCY 468
Query: 134 KNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHD 193
+ S +WKD+N + P M+ R FIY G
Sbjct: 469 MKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDG 528
Query: 194 RYTHSLMMKRQVALLLTEPLA 214
+A LL EP A
Sbjct: 529 FGVQHSKTYEHIAGLLFEPYA 549
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 4/204 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
M+ AL + E + ++ PY +++ LI Y EAKW YKG+ P+ +EY
Sbjct: 357 MQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEY 416
Query: 61 KSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFE 120
+ SIG + F L D I ++ E + K ++A+ TI RL DD+ E
Sbjct: 417 MKNSWISIGGIPILSHLFFRLTDSIE-EEAAESMHKYHDIVRASCTILRLADDMGTSLDE 475
Query: 121 QKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYF 180
+RG P +V+CY N+ S +WK +N+E++ ++ ++
Sbjct: 476 VERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANL 534
Query: 181 ARSGHFIYDDGHDRY--THSLMMK 202
AR +IY D + HSL+ K
Sbjct: 535 ARMAQWIYQHESDGFGMQHSLVNK 558
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 4/216 (1%)
Query: 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEY 60
M+ AL + + ++ KE IPY +Q +L Y EA+W Y G+ P+ +EY
Sbjct: 330 MQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEY 389
Query: 61 KSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFE 120
+ +SI + F + D TK+ + + K ++ + + RL DD+ E
Sbjct: 390 LENSWQSISGPCMLTHIFFRVTDSF-TKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEE 448
Query: 121 QKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPL--PMLQRLL 178
RG P +++CY + + S WK +N E ++ + P + +
Sbjct: 449 VSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKDS-PFGKDFIGCAV 507
Query: 179 YFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLA 214
R +Y +G T ++ +Q+ L EP A
Sbjct: 508 DLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 12/205 (5%)
Query: 18 ELAKEGRSYG----IPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTL 73
++AKEGR + Y + + + + Y EA+W YVP+F+EY A SI L T+
Sbjct: 585 DIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTV 644
Query: 74 AVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECY 133
+ S + G+ + T + I + ++ L+ GRL++D Y+ E+ +G SA++CY
Sbjct: 645 VLISALFTGE-VLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCY 703
Query: 134 KNQH-GVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYF--ARSGHFIYDD 190
H +S N+ +++N E +N +P + + L F AR Y
Sbjct: 704 MKDHPKISEEEALQHVYSVMENALEELNREFVNNK---IPDIYKRLVFETARIMQLFYMQ 760
Query: 191 GHD-RYTHSLMMKRQVALLLTEPLA 214
G +H + +K V L +P+A
Sbjct: 761 GDGLTLSHDMEIKEHVKNCLFQPVA 785
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 5/175 (2%)
Query: 1 MKFIVKALLDIYREAEEELAK-EGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDE 59
M+ K + E ++ K +GR + + ++ + Y E +WL GY+PTF+E
Sbjct: 541 MQTCFKVWFKLMEEVNNDVVKVQGRDM-LAHIRKPWELYFNCYVQEREWLEAGYIPTFEE 599
Query: 60 YKSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKF 119
Y S+GL + + +G+ + D E + + + RL +D Y+
Sbjct: 600 YLKTYAISVGLGPCTLQPILLMGELV-KDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQA 658
Query: 120 EQKRGHNPSAVECY-KNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPM 173
E+ RG S + CY K+ G + + K+ + E P+ +PM
Sbjct: 659 EKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSN-DIPM 712
>pdb|3C9G|A Chain A, Crystal Structure Of Uncharacterized Upf0201 Protein
Af_135
pdb|3C9G|B Chain B, Crystal Structure Of Uncharacterized Upf0201 Protein
Af_135
Length = 142
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 4 IVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELI 39
++KA+ +I+ +AE E+++EG YG Y+ +EL+
Sbjct: 25 VLKAIRNIFPDAEIEISEEGEVYGRAYSLDRFRELL 60
>pdb|3MIN|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|3MIN|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|1N2C|A Chain A, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|C Chain C, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1L5H|A Chain A, Femo-Cofactor Deficient Nitrogenase Mofe Protein
pdb|1M1N|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|E Chain E, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|G Chain G, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1Y|A Chain A, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|C Chain C, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|I Chain I, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|K Chain K, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|A Chain A, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|C Chain C, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|I Chain I, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|K Chain K, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|2AFH|A Chain A, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|C Chain C, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|A Chain A, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|C Chain C, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|I Chain I, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|K Chain K, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|A Chain A, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|C Chain C, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
Length = 491
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 32 KQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTL-AVASFVDLG-DFIATKD 89
++ +E+I Y E + + Y P E K V L GLR + ++ DLG + + T
Sbjct: 320 QKKCEEVIAKYKPEWEAVVAKYRPRL-EGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTGY 378
Query: 90 NFECILKNAKSLKATETIGRLMDDIAGYKFEQ 121
F +++K L DD+ GY+FE+
Sbjct: 379 EFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEE 410
>pdb|1G20|A Chain A, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|C Chain C, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|A Chain A, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|C Chain C, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|3U7Q|A Chain A, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
pdb|3U7Q|C Chain C, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
Length = 492
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 32 KQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTL-AVASFVDLG-DFIATKD 89
++ +E+I Y E + + Y P E K V L GLR + ++ DLG + + T
Sbjct: 321 QKKCEEVIAKYKPEWEAVVAKYRPRL-EGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTGY 379
Query: 90 NFECILKNAKSLKATETIGRLMDDIAGYKFEQ 121
F +++K L DD+ GY+FE+
Sbjct: 380 EFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEE 411
>pdb|3K1A|A Chain A, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
pdb|3K1A|C Chain C, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
Length = 491
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 32 KQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTL-AVASFVDLG-DFIATKD 89
++ +E+I Y E + + Y P E K V L GLR + ++ DLG + + T
Sbjct: 320 QKKCEEVIAKYKPEWEAVVAKYRPRL-EGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTGY 378
Query: 90 NFECILKNAKSLKATETIGRLMDDIAGYKFEQ 121
F +++K L DD+ GY+FE+
Sbjct: 379 EFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEE 410
>pdb|1FP4|A Chain A, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
pdb|1FP4|C Chain C, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
Length = 492
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 32 KQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTL-AVASFVDLG-DFIATKD 89
++ +E+I Y E + + Y P E K V L GLR + ++ DLG + + T
Sbjct: 321 QKKCEEVIAKYKPEWEAVVAKYRPRL-EGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTGY 379
Query: 90 NFECILKNAKSLKATETIGRLMDDIAGYKFEQ 121
F +++K L DD+ GY+FE+
Sbjct: 380 EFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEE 411
>pdb|1PS1|A Chain A, Pentalenene Synthase
pdb|1PS1|B Chain B, Pentalenene Synthase
Length = 337
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 72 TLAVASFVDL----GDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNP 127
T+ V VDL G F F+ + +A L+ + L++DIA + E+ RG
Sbjct: 176 TIGVQPTVDLAERAGRFEVPHRVFDSAVMSAM-LQIAVDVNLLLNDIASLEKEEARGEQN 234
Query: 128 SAVECYKNQHGVS 140
+ V + +HG S
Sbjct: 235 NMVMILRREHGWS 247
>pdb|2Y9Y|A Chain A, Chromatin Remodeling Factor Isw1a(Del_atpase)
Length = 374
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 37 ELIILYFTEAKWLYK--GYVPTFDEYKSV 63
+L +LY E W K GYVPT D+ K+
Sbjct: 52 QLQVLYEKERMWTAKKTGYVPTMDDVKAA 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,863,578
Number of Sequences: 62578
Number of extensions: 208464
Number of successful extensions: 417
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 33
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)