Query 028006
Match_columns 215
No_of_seqs 165 out of 794
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 07:14:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 1.5E-65 5.1E-70 472.2 21.1 213 1-215 341-554 (554)
2 3m00_A Aristolochene synthase; 100.0 1.4E-64 4.9E-69 465.3 21.5 213 1-215 337-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 2.2E-64 7.5E-69 464.8 22.5 212 1-214 339-551 (555)
4 1n1b_A (+)-bornyl diphosphate 100.0 2.7E-61 9.3E-66 445.5 20.9 212 1-214 336-549 (549)
5 2ong_A 4S-limonene synthase; m 100.0 1.1E-60 3.9E-65 441.2 23.5 212 1-214 330-543 (543)
6 3p5p_A Taxadiene synthase; cla 100.0 8.2E-60 2.8E-64 447.9 21.8 212 1-215 541-756 (764)
7 3sdr_A Alpha-bisabolene syntha 100.0 9.3E-60 3.2E-64 450.1 21.2 213 1-215 600-817 (817)
8 2j5c_A 1,8-cineole synthase; t 100.0 7.3E-60 2.5E-64 437.3 18.9 212 1-214 357-569 (569)
9 3s9v_A Abietadiene synthase, c 100.0 4.3E-59 1.5E-63 444.0 20.4 210 1-214 572-785 (785)
10 1ps1_A Pentalenene synthase; a 100.0 3.8E-36 1.3E-40 262.2 13.8 164 1-173 113-277 (337)
11 3kb9_A EPI-isozizaene synthase 100.0 8.5E-36 2.9E-40 265.1 13.8 157 1-163 156-312 (382)
12 1di1_A Aristolochene synthase; 100.0 1.2E-34 4.2E-39 248.5 13.5 150 1-163 107-264 (300)
13 3bny_A Aristolochene synthase; 100.0 9E-33 3.1E-37 239.2 13.7 150 1-163 121-278 (320)
14 3v1v_A 2-MIB synthase, 2-methy 100.0 3.8E-31 1.3E-35 238.2 13.2 153 4-163 237-390 (433)
15 3pya_A ENT-copalyl diphosphate 99.9 4.1E-23 1.4E-27 194.9 7.9 160 1-214 559-720 (727)
16 1yyq_A Trichodiene synthase; t 99.4 1.1E-12 3.6E-17 116.0 12.0 144 10-162 129-276 (374)
17 3ipi_A Geranyltranstransferase 94.7 0.33 1.1E-05 41.0 11.1 142 26-183 127-278 (295)
18 3lmd_A Geranylgeranyl pyrophos 94.4 0.61 2.1E-05 40.5 12.3 104 26-137 160-275 (360)
19 3rmg_A Octaprenyl-diphosphate 93.7 2.2 7.6E-05 36.5 14.4 90 23-118 130-220 (334)
20 3oyr_A Trans-isoprenyl diphosp 93.0 3.5 0.00012 35.4 14.6 91 23-119 148-239 (345)
21 3mzv_A Decaprenyl diphosphate 92.5 4.7 0.00016 34.5 15.9 89 23-118 136-226 (341)
22 2ftz_A Geranyltranstransferase 90.5 6.7 0.00023 32.7 13.4 121 26-161 134-264 (284)
23 1rtr_A Geranyltranstransferase 90.5 2.2 7.4E-05 36.0 10.3 111 36-161 148-271 (301)
24 3ts7_A Geranyltranstransferase 90.5 4.3 0.00015 34.6 12.1 111 36-160 158-281 (324)
25 3p8r_A Geranyltranstransferase 90.2 2.6 9E-05 35.5 10.5 112 36-161 158-282 (302)
26 3p8l_A Geranyltranstransferase 90.1 3.8 0.00013 34.6 11.4 110 37-161 157-279 (302)
27 3m0g_A Farnesyl diphosphate sy 90.0 2.2 7.4E-05 36.0 9.8 109 36-160 147-268 (297)
28 1wy0_A Geranylgeranyl pyrophos 89.1 5 0.00017 34.2 11.6 85 27-118 138-224 (342)
29 3apz_A Geranyl diphosphate syn 88.8 8 0.00028 33.0 12.7 91 24-119 151-241 (348)
30 4f62_A Geranyltranstransferase 88.7 3.9 0.00013 34.7 10.6 111 37-161 152-275 (317)
31 2h8o_A Geranyltranstransferase 88.5 4 0.00014 34.9 10.5 111 36-161 192-315 (335)
32 3lsn_A Geranyltranstransferase 88.0 8.9 0.0003 32.3 12.3 110 38-160 154-275 (304)
33 3lom_A Geranyltranstransferase 88.0 6.4 0.00022 33.3 11.5 112 37-160 159-282 (313)
34 4dhd_A Polyprenyl synthetase; 86.9 5.7 0.0002 34.2 10.7 87 27-118 133-231 (358)
35 3pde_A Farnesyl-diphosphate sy 85.7 11 0.00037 31.8 11.6 109 37-160 156-277 (309)
36 3uca_A Geranyltranstransferase 85.1 8.5 0.00029 32.7 10.7 112 36-161 180-304 (324)
37 3pko_A Geranylgeranyl pyrophos 84.5 18 0.00061 30.7 15.5 103 26-136 143-258 (334)
38 1rqj_A Geranyltranstransferase 83.4 12 0.00041 31.2 10.8 112 36-161 152-276 (299)
39 3llw_A Geranyltranstransferase 82.3 8.2 0.00028 32.6 9.4 112 36-160 159-280 (311)
40 3nf2_A Putative polyprenyl syn 81.4 15 0.00052 31.5 10.9 86 27-118 144-230 (352)
41 3npk_A Geranyltranstransferase 81.1 23 0.00078 29.5 12.6 112 35-160 144-265 (291)
42 1wmw_A Geranylgeranyl diphosph 80.9 19 0.00065 30.4 11.3 85 26-118 130-218 (330)
43 2q80_A Geranylgeranyl pyrophos 79.7 16 0.00055 30.5 10.3 88 23-118 108-195 (301)
44 2j1p_A Geranylgeranyl pyrophos 77.7 3.6 0.00012 34.4 5.6 109 37-161 161-272 (293)
45 2e8v_A Geranylgeranyl pyrophos 73.4 22 0.00074 30.3 9.5 86 27-118 132-220 (340)
46 1uby_A FPS, farnesyl diphospha 72.2 24 0.00082 30.3 9.6 89 26-119 169-264 (367)
47 2her_A Fragment, farnesyl pyro 71.1 44 0.0015 28.8 11.0 87 26-118 168-260 (368)
48 3aqb_B Component B of hexapren 69.9 22 0.00076 29.9 8.7 88 26-118 130-217 (325)
49 3tc1_A Octaprenyl pyrophosphat 69.5 49 0.0017 27.7 13.2 102 26-137 122-235 (315)
50 1yhl_A Farnesyl pyrophosphate 68.4 27 0.00093 29.8 9.1 107 26-138 151-285 (362)
51 3kra_B Geranyl diphosphate syn 68.4 9.8 0.00033 31.4 6.0 92 38-160 151-244 (274)
52 2azj_A Geranylgeranyl pyrophos 68.4 28 0.00096 28.9 8.9 118 27-161 136-258 (289)
53 1v4e_A Octoprenyl-diphosphate 63.0 42 0.0014 27.9 9.0 87 23-120 124-212 (299)
54 3acx_A Dehydrosqualene synthas 60.3 69 0.0024 26.2 13.2 127 33-173 108-243 (293)
55 3fau_A NEDD4-binding protein 2 59.1 9.1 0.00031 25.4 3.4 23 137-159 6-28 (82)
56 2qis_A Farnesyl pyrophosphate 57.6 36 0.0012 29.3 7.9 88 26-118 176-270 (374)
57 2q58_A Fragment, farnesyl pyro 52.1 19 0.00065 31.0 5.1 87 28-118 170-260 (368)
58 4hd1_A Squalene synthase HPNC; 48.2 1.1E+02 0.0039 25.0 12.5 127 35-176 106-241 (294)
59 3lk5_A Geranylgeranyl pyrophos 46.2 80 0.0027 27.2 8.2 77 36-118 185-263 (380)
60 1tr8_A Conserved protein (MTH1 44.9 12 0.00042 26.3 2.3 24 127-150 66-89 (102)
61 2zqe_A MUTS2 protein; alpha/be 42.7 25 0.00084 23.5 3.5 20 137-156 10-29 (83)
62 2d9i_A NEDD4-binding protein 2 41.2 23 0.00079 24.1 3.3 21 137-157 14-34 (96)
63 2kw6_A Cyclin-dependent kinase 39.8 41 0.0014 21.5 3.9 44 4-47 12-60 (65)
64 3vj8_A Squalene synthase; farn 37.9 1.8E+02 0.0062 24.4 12.1 138 51-196 132-284 (343)
65 3mav_A Farnesyl pyrophosphate 36.3 91 0.0031 26.9 7.0 88 27-118 179-292 (395)
66 2m1l_A Cyclin-dependent kinase 34.5 70 0.0024 20.7 4.4 44 4-47 16-64 (69)
67 1d0q_A DNA primase; zinc-bindi 33.8 27 0.00092 24.1 2.6 28 124-151 65-92 (103)
68 4akk_A Nitrate regulatory prot 32.7 36 0.0012 29.7 3.8 52 103-154 346-398 (423)
69 3qd7_X Uncharacterized protein 30.7 44 0.0015 24.5 3.5 35 121-157 39-73 (137)
70 1xri_A AT1G05000; structural g 29.2 15 0.0005 26.6 0.6 26 126-151 106-131 (151)
71 3dyh_A Farnesyl pyrophosphate 29.0 2.7E+02 0.0094 23.8 9.0 86 27-118 180-284 (390)
72 2ww9_B Protein transport prote 28.9 1.2E+02 0.0043 20.1 5.1 39 29-70 19-57 (80)
73 2ihi_A Pyrophosphate synthase; 28.3 1.4E+02 0.0048 25.8 6.8 86 27-118 179-292 (395)
74 3emu_A Leucine rich repeat and 25.0 52 0.0018 24.2 3.1 24 127-150 102-126 (161)
75 3ic3_A Putative pyruvate dehyd 23.9 96 0.0033 21.7 3.9 46 104-167 46-91 (101)
76 3rz2_A Protein tyrosine phosph 23.2 40 0.0014 25.5 2.1 27 124-150 129-155 (189)
77 3s4o_A Protein tyrosine phosph 22.3 39 0.0013 24.4 1.8 25 126-150 123-148 (167)
78 2vkc_A NEDD4-binding protein 2 20.7 76 0.0026 23.0 3.1 22 136-157 58-79 (135)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=1.5e-65 Score=472.15 Aligned_cols=213 Identities=40% Similarity=0.684 Sum_probs=198.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh
Q 028006 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD 80 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~ 80 (215)
||+||++|||++|||++++.++||+++++|++++|+++++||++||+|+++||+||+||||+||.+|+|+++++++++++
T Consensus 341 mK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~ 420 (554)
T 3g4d_A 341 MKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVG 420 (554)
T ss_dssp GHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHh
Confidence 89999999999999999988999989999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 81 LGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 81 ~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
||+.+ |+++++|+.++|+|+++++.++||+|||+||++|++||+++|+|+|||+|||+|+|||+++++++++++||+||
T Consensus 421 mg~~l-t~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN 499 (554)
T 3g4d_A 421 MGDIV-TPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLN 499 (554)
T ss_dssp SCTTS-CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCC-CHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccCC
Q 028006 161 EELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLAI 215 (215)
Q Consensus 161 ~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~Dg~t~~~~-~k~~i~~l~~~p~~i 215 (215)
++|++++++|++|+++++|+||+++++|++| ||||.|+. ||++|++||++|+|+
T Consensus 500 ~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 500 QEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHSSSCSSCHHHHHHHHHHHHHHHHHSCC------CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHHHHHHHHhcCCCCC
Confidence 9999988999999999999999999999999 99999965 999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.4e-64 Score=465.27 Aligned_cols=213 Identities=36% Similarity=0.569 Sum_probs=201.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh
Q 028006 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD 80 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~ 80 (215)
||+||++|||+++|+++++.++||+++++|++++|+++++||++||+|+++||+||+||||+||.+|+|+++++++++++
T Consensus 337 mK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g 416 (550)
T 3m00_A 337 MKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLG 416 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 81 LGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 81 ~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
+ +.+ |+++++|+.++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+|+|+|+|+++++++++++||+||
T Consensus 417 ~-~~l-t~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN 494 (550)
T 3m00_A 417 M-KSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN 494 (550)
T ss_dssp C-TTC-CHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCC-cHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7 679 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccCC
Q 028006 161 EELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLAI 215 (215)
Q Consensus 161 ~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~Dg~t~~~~-~k~~i~~l~~~p~~i 215 (215)
+++++++++|++|+++++|+||+++++|++|+||||.|+. ||++|++||++|+|+
T Consensus 495 ~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 495 EGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 9999988999999999999999999999984499999975 999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=2.2e-64 Score=464.84 Aligned_cols=212 Identities=28% Similarity=0.451 Sum_probs=203.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh
Q 028006 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD 80 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~ 80 (215)
||+||++|+|++||+++++.++|++++++|++++|+++++||++||+|+++||+||+||||+||.+|+|+++++++++++
T Consensus 339 mk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~ 418 (555)
T 3n0f_A 339 MKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFA 418 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHh
Confidence 79999999999999998877777779999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 81 LGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 81 ~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
||+.+ |+++++|+.++|+|+++++.++||+|||+||++|++||+++|+|+|||+|+|+|+|+|+++++++++++||+||
T Consensus 419 mg~~l-t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN 497 (555)
T 3n0f_A 419 VVQNI-KKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMN 497 (555)
T ss_dssp HCSSC-CHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCC-CHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccC
Q 028006 161 EELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLA 214 (215)
Q Consensus 161 ~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~Dg~t~~~~-~k~~i~~l~~~p~~ 214 (215)
++|++++++|++|+++++|+||+++++|+++ ||||.|+. ||++|++||++|+|
T Consensus 498 ~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 498 KEKLGGSLFAKPFVETAINLARQSHCTYHNG-DAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC----CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHHHHHHHHHhcCCC
Confidence 9999988999999999999999999999999 99999975 99999999999996
No 4
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=2.7e-61 Score=445.47 Aligned_cols=212 Identities=27% Similarity=0.464 Sum_probs=194.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh
Q 028006 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD 80 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~ 80 (215)
||+||++|+++++|++.++.+.|+++++.|++++|++++++|++||+|+++||+||+||||++|.+|+|+++++++++++
T Consensus 336 mk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~ 415 (549)
T 1n1b_A 336 MQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFT 415 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHH
Confidence 69999999999999999887777779999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChhh-hhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028006 81 LGDFIATKDN-FECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDI 159 (215)
Q Consensus 81 ~g~~l~~~e~-~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~l 159 (215)
||+.+ |+++ ++|+.++|+++++++.++||+|||+||++|+++|+++|+|+|||+|||+|+|||+++++++++++||+|
T Consensus 416 ~g~~l-t~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~l 494 (549)
T 1n1b_A 416 FANAS-HDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDM 494 (549)
T ss_dssp STTCC-CCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCC-cHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccC
Q 028006 160 NEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLA 214 (215)
Q Consensus 160 n~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~Dg~t~~~~-~k~~i~~l~~~p~~ 214 (215)
|+++++++++|++|+++++|++|+++++|+++ ||||.|+. +|++|++||++|||
T Consensus 495 n~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~-Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 495 NTAIAAGYPFPDGMVAGAANIGRVAQFIYLHG-DGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTS-CCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHeeehheeCC-CCCCCCcHHHHHHHHHHhcCCCC
Confidence 99999988999999999999999999999999 99999975 99999999999997
No 5
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1.1e-60 Score=441.25 Aligned_cols=212 Identities=26% Similarity=0.411 Sum_probs=206.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh
Q 028006 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD 80 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~ 80 (215)
||+||++|+++++|++.++.+.|++++++|++++|++++++|++||+|+++||+||+||||++|.+|+|+++++++++++
T Consensus 330 mk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~ 409 (543)
T 2ong_A 330 MQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFR 409 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHH
Confidence 68999999999999999887777779999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 81 LGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 81 ~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
||+.+ |+++++|+.++|+++++++.++||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++++++||+||
T Consensus 410 ~g~~~-t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln 488 (543)
T 2ong_A 410 VTDSF-TKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMN 488 (543)
T ss_dssp HSSCC-CHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCC-CHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh-cCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccC
Q 028006 161 EEL-LNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLA 214 (215)
Q Consensus 161 ~e~-l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~Dg~t~~~~-~k~~i~~l~~~p~~ 214 (215)
+++ ++++++|++|+++++|+||+++++|+++ ||||.|+. +|++|++||++|||
T Consensus 489 ~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~-D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 489 AERVSKDSPFGKDFIGCAVDLGRMAQLMYHNG-DGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSC-STTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHhccCCCCCCHHHHHHHHHHHHeehhheeCC-CCCCCccHHHHHHHHHHhccCCC
Confidence 999 9988899999999999999999999999 99999965 99999999999996
No 6
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=8.2e-60 Score=447.92 Aligned_cols=212 Identities=22% Similarity=0.411 Sum_probs=197.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHH
Q 028006 1 MKFIVKALLDIYREAEEELAK-EGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFV 79 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~ 79 (215)
||+||++|||++|||++++.+ ||+ ++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++.+++
T Consensus 541 mk~~f~aL~~~~~ei~~~~~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~ 619 (764)
T 3p5p_A 541 MQTCFKVWFKLMEEVNNDVVKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPIL 619 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHH
Confidence 799999999999999988766 666 999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCCCcchhhHHhhcC-CCCHHHHHHHHHHHHHHHHHH
Q 028006 80 DLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQH-GVSEEEAVKELLLEVANSWKD 158 (215)
Q Consensus 80 ~~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~ym~e~-g~s~eeA~~~i~~~i~~~wk~ 158 (215)
++|+.+ |+++++|+..+|+|+++++.|+||+|||+||++|++||+++|+|+|||+|| |+|+|+|+++++++|+++||+
T Consensus 620 ~~G~~l-t~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKe 698 (764)
T 3p5p_A 620 LMGELV-KDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKE 698 (764)
T ss_dssp TSSSCC-CGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCC-cHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999 999999976679999999999999999999999999999999999999999 799999999999999999999
Q ss_pred HHHhhcC-CCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccCC
Q 028006 159 INEELLN-PTTVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLAI 215 (215)
Q Consensus 159 ln~e~l~-~~~~p~~~~~~~ln~aR~~~~~Y~~~~Dg~t~~~~-~k~~i~~l~~~p~~i 215 (215)
||+++++ ++++|++|+++++|+||+++++|+++ ||||.|+. ||++|++||++||++
T Consensus 699 ln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 699 ASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFI-DGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHHHSCCSSSCHHHHHHHHHTHHHHHHHSCC--------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCCcHHHHHHHHHHHhcCCcc
Confidence 9999997 78899999999999999999999999 99999976 999999999999985
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=9.3e-60 Score=450.14 Aligned_cols=213 Identities=30% Similarity=0.491 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHH-HHHHHHH
Q 028006 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRT-LAVASFV 79 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~-~~~~~~~ 79 (215)
||+||++|||++||+++++.+++++++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++ ++.++++
T Consensus 600 mk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~ 679 (817)
T 3sdr_A 600 MKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLI 679 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHH
Confidence 799999999999999988777656699999999999999999999999999999999999999999999999 8888899
Q ss_pred hhCCCCCChhhhhhhh--cchHHHHHHHHHHHHhcCcccchHhhhcCCCcchhhHHhhcC-CCCHHHHHHHHHHHHHHHH
Q 028006 80 DLGDFIATKDNFECIL--KNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQH-GVSEEEAVKELLLEVANSW 156 (215)
Q Consensus 80 ~~g~~l~~~e~~~~~~--~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~ym~e~-g~s~eeA~~~i~~~i~~~w 156 (215)
++|+.+ |+++++|+. +.|+|+++++.|+||+|||+||++|++||+++|+|+|||+|| |+|+|+|+++++++|+++|
T Consensus 680 ~~g~~l-t~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~w 758 (817)
T 3sdr_A 680 MDGQLL-SQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAV 758 (817)
T ss_dssp CTTCCC-CHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCCCC-CHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 999999 999999976 456999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccCC
Q 028006 157 KDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLAI 215 (215)
Q Consensus 157 k~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~Dg~t~~~~-~k~~i~~l~~~p~~i 215 (215)
|+||+++++++++|++|+++++|++|+++++|+++ ||||.|+. ||++|++||++||++
T Consensus 759 Keln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 759 KELTREFLKPDDVPFACKKMLFEETRVTMVIFKDG-DGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHTCSC-CSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCchHHHHHHHHHHhcCCCCC
Confidence 99999999988999999999999999999999999 99999975 999999999999985
No 8
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=7.3e-60 Score=437.28 Aligned_cols=212 Identities=28% Similarity=0.424 Sum_probs=189.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh
Q 028006 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD 80 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~ 80 (215)
||+||++|+++++|++.++.+.|++++++|++++|++++++|++||+|+.+||+||+||||++|.+|+|+++++++++++
T Consensus 357 mk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~ 436 (569)
T 2j5c_A 357 MQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFR 436 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHH
Confidence 68999999999999999887777779999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 81 LGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 81 ~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
||+.+ |+++++|+.++|+++++++.++||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++++++||+||
T Consensus 437 ~g~~l-t~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln 515 (569)
T 2j5c_A 437 LTDSI-EEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMN 515 (569)
T ss_dssp SCSSC-CHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCC-CHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccC
Q 028006 161 EELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLA 214 (215)
Q Consensus 161 ~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~Dg~t~~~~-~k~~i~~l~~~p~~ 214 (215)
++|++ +++|++|+++++|+||+++++|+++.||||.|+. +|++|++||++|||
T Consensus 516 ~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 516 KEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 99999 8999999999999999999999886699999965 99999999999997
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=4.3e-59 Score=444.01 Aligned_cols=210 Identities=29% Similarity=0.448 Sum_probs=198.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHH
Q 028006 1 MKFIVKALLDIYREAEEELAK-EGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFV 79 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~ 79 (215)
||+||++|||++|||++++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++++++
T Consensus 572 mk~~f~aL~~~~nei~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~ 650 (785)
T 3s9v_A 572 MKICFVGFYNTFNDIAKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISAL 650 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHH
Confidence 799999999999999988766 666 999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCCCcchhhHHhhcC-CCCHHHHHHHHHHHHHHHHHH
Q 028006 80 DLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQH-GVSEEEAVKELLLEVANSWKD 158 (215)
Q Consensus 80 ~~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~ym~e~-g~s~eeA~~~i~~~i~~~wk~ 158 (215)
++|+.+ |+++++|+..+|+|+++++.|+||+|||+||++|++||+++|+|+|||+|| |+|+|+|+++++++++++||+
T Consensus 651 ~~G~~l-t~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKe 729 (785)
T 3s9v_A 651 FTGEVL-TDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEE 729 (785)
T ss_dssp CSSSCC-CHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCC-CHHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999 999999976669999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh--HHHHHHHHcccccC
Q 028006 159 INEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLM--MKRQVALLLTEPLA 214 (215)
Q Consensus 159 ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~Dg~t~~~~--~k~~i~~l~~~p~~ 214 (215)
||+++++++ +|++|+++++|++|+++++|+++ ||||.|+. ||++|++||++||.
T Consensus 730 ln~e~l~~~-~p~~~~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 730 LNREFVNNK-IPDIYKRLVFETARIMQLFYMQG-DGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHSC-CCHHHHHHHHHHHHHHHHHTCCC-C----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHHHHhcCC-CCCCCCChHHHHHHHHHHhcccCC
Confidence 999999977 99999999999999999999999 99999965 99999999999983
No 10
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=3.8e-36 Score=262.15 Aligned_cols=164 Identities=17% Similarity=0.150 Sum_probs=144.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC-ChHHhhhhhhhhhhhHHHHHHHHH
Q 028006 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVP-TFDEYKSVALRSIGLRTLAVASFV 79 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~P-s~eEYl~~~~~s~g~~~~~~~~~~ 79 (215)
|+.+|+++++++++++..+ +.....++++.|+++++++++||+|+.+|++| |++||+++|++|+|+.++++++++
T Consensus 113 ~~~~~~~l~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~ 188 (337)
T 1ps1_A 113 APPIAHGFADIWRRTCEGM----TPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAER 188 (337)
T ss_dssp SCHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHH
Confidence 5789999999999998764 23557899999999999999999999999999 999999999999999999999999
Q ss_pred hhCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028006 80 DLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDI 159 (215)
Q Consensus 80 ~~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~l 159 (215)
++|..+ |++++++ +..++|.++++.++||+|||+||++|+++|+++|+|.|||+++|+|+|+|++++.++++++||++
T Consensus 189 ~~g~~l-~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~ 266 (337)
T 1ps1_A 189 AGRFEV-PHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKSRSVSHMQNEVRARLEQY 266 (337)
T ss_dssp HHTCCC-CHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCC-CHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999 9888876 46668999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCHHH
Q 028006 160 NEELLNPTTVPLPM 173 (215)
Q Consensus 160 n~e~l~~~~~p~~~ 173 (215)
|+..- .+|..+
T Consensus 267 ~~~~~---~lp~~~ 277 (337)
T 1ps1_A 267 LLLES---CLPKVG 277 (337)
T ss_dssp HHHHH---HHHHHH
T ss_pred HHHHH---Hhhhhh
Confidence 99883 355443
No 11
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=8.5e-36 Score=265.07 Aligned_cols=157 Identities=13% Similarity=0.044 Sum_probs=146.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh
Q 028006 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD 80 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~ 80 (215)
++.+|++++++.++++..+.+ ....++++.|+++++++++||+|+.+|++||++|||++|++|+|+.+++++++++
T Consensus 156 ~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~ 231 (382)
T 3kb9_A 156 EDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPS 231 (382)
T ss_dssp SSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHH
Confidence 467899999999999866433 3478999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 81 LGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 81 ~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
+|..+ |++++++ +..++|+++++.++||+|||+||++|+++|+++|+|.|||+++|+|+|+|++++.++++++||++|
T Consensus 232 ~g~~l-~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~~ 309 (382)
T 3kb9_A 232 SGCEL-PDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFL 309 (382)
T ss_dssp HTCCC-CHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCC-CHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999988 667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 028006 161 EEL 163 (215)
Q Consensus 161 ~e~ 163 (215)
+..
T Consensus 310 ~~~ 312 (382)
T 3kb9_A 310 AVE 312 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 843
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=1.2e-34 Score=248.49 Aligned_cols=150 Identities=13% Similarity=0.076 Sum_probs=139.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh
Q 028006 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD 80 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~ 80 (215)
||.+|+++++++++++..+. .+.++.|+.++++++ |++|+..|++||++||+++|++|+|+++++++++++
T Consensus 107 ~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~ 177 (300)
T 1di1_A 107 TKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLEYREKDVGKALLSALMRFS 177 (300)
T ss_dssp TCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHH
Confidence 57899999999999988762 366778999999997 899999999999999999999999999999999999
Q ss_pred hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCC--------CcchhhHHhhcCCCCHHHHHHHHHHHH
Q 028006 81 LGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGH--------NPSAVECYKNQHGVSEEEAVKELLLEV 152 (215)
Q Consensus 81 ~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~--------~~n~V~~ym~e~g~s~eeA~~~i~~~i 152 (215)
+|..+ |+++++. .++|+++++.++||+|||+||++|+++|+ ++|+|.|||+++|+|+|+|++++.+++
T Consensus 178 ~g~~l-~~e~~~~---~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~g~s~eeA~~~~~~~i 253 (300)
T 1di1_A 178 MGLRL-SADELQD---MKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIPATKRVLWSMT 253 (300)
T ss_dssp HTCCC-CHHHHHT---THHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCC-CHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999 9999984 59999999999999999999999999999 789999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 028006 153 ANSWKDINEEL 163 (215)
Q Consensus 153 ~~~wk~ln~e~ 163 (215)
+++||++|+..
T Consensus 254 ~~~~~~~~~~~ 264 (300)
T 1di1_A 254 REWETVHDEIV 264 (300)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=9e-33 Score=239.22 Aligned_cols=150 Identities=12% Similarity=0.105 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh
Q 028006 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD 80 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~ 80 (215)
|+.+|++++++++|++... + .+.++.|+.++ ++++|++|+.+|++||++||+++|++|+|+++++++++++
T Consensus 121 ~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~ 191 (320)
T 3bny_A 121 SIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFS 191 (320)
T ss_dssp TSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHH
Confidence 6789999999999998765 2 25566677777 5999999999999999999999999999999999999999
Q ss_pred hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCC--------CcchhhHHhhcCCCCHHHHHHHHHHHH
Q 028006 81 LGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGH--------NPSAVECYKNQHGVSEEEAVKELLLEV 152 (215)
Q Consensus 81 ~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~--------~~n~V~~ym~e~g~s~eeA~~~i~~~i 152 (215)
+|..+ |+++++. .|+|+++++.++||+|||+||++|+++|+ ++|+|.|||+++|+|+|+|++++.+++
T Consensus 192 ~g~~l-~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~~m~~~g~s~eeA~~~~~~~i 267 (320)
T 3bny_A 192 MGLKL-SPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMC 267 (320)
T ss_dssp HTCCC-CHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCC-CHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999 9999984 69999999999999999999999999998 789999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 028006 153 ANSWKDINEEL 163 (215)
Q Consensus 153 ~~~wk~ln~e~ 163 (215)
++.|+++|+..
T Consensus 268 ~~~~~~~~~l~ 278 (320)
T 3bny_A 268 REWELRHQLLV 278 (320)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999865
No 14
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.97 E-value=3.8e-31 Score=238.25 Aligned_cols=153 Identities=12% Similarity=0.078 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhhCC
Q 028006 4 IVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDLGD 83 (215)
Q Consensus 4 ~~~~l~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~ 83 (215)
+-.+++++.+++...+.+ ....++++.|++|+++|++||+|+..|++||++|||++|++| |+.+++.+..+++|.
T Consensus 237 ~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~ 311 (433)
T 3v1v_A 237 PRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGY 311 (433)
T ss_dssp HHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCC
Confidence 356889999999766433 447899999999999999999999999999999999999999 777766778888999
Q ss_pred CCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcC-CCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 028006 84 FIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRG-HNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINEE 162 (215)
Q Consensus 84 ~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G-~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln~e 162 (215)
.+ |++++++ +..++|+++++.++||+|||+||+||+++| +++|+|.|||+++|+|+|+|++++.+++++.++++.+.
T Consensus 312 ~l-p~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~ 389 (433)
T 3v1v_A 312 EL-PADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQLCERDAYLKAVEVHNELQHSFEAA 389 (433)
T ss_dssp CC-CHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 9999887 566779999999999999999999999995 78899999999999999999999999999999988765
Q ss_pred h
Q 028006 163 L 163 (215)
Q Consensus 163 ~ 163 (215)
.
T Consensus 390 ~ 390 (433)
T 3v1v_A 390 A 390 (433)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=99.88 E-value=4.1e-23 Score=194.94 Aligned_cols=160 Identities=7% Similarity=0.022 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh
Q 028006 1 MKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD 80 (215)
Q Consensus 1 mk~~~~~l~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~ 80 (215)
||+||.+|||++||++.++.+++|.++++|++++|.+++++++.|++ + +| +. .++.++..++
T Consensus 559 mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~--------~E----Ae--llv~~I~l~s--- 620 (727)
T 3pya_A 559 ASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E--------GE----GE--LMVKMIILMK--- 620 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C--------CH----HH--HHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c--------cc----ee--eeeeeeecCC---
Confidence 69999999999999997655555559999999999999999999987 2 33 21 3334333333
Q ss_pred hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 81 LGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 81 ~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
|..+ ++ ++.+ +.+..|.++++.++||+||+.+|++|+ .+++.+.|+..|++|+
T Consensus 621 -G~~l-~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~-----------------------~~~~~~~IE~~mqEL~ 673 (727)
T 3pya_A 621 -NNDL-TN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE-----------------------KEKTIKSMEKEMGKMV 673 (727)
T ss_dssp -SSCG-GG-GGSS-HHHHHHHHHHHHHSCCCC------CHH-----------------------HHHHHHHHHHHHHHHH
T ss_pred -Ccch-Hh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH-----------------------HHHHHHHHHHHHHHHH
Confidence 7778 87 7665 677779999999999999999999977 5588999999999999
Q ss_pred HhhcCCC--CCCHHHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHHHcccccC
Q 028006 161 EELLNPT--TVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLA 214 (215)
Q Consensus 161 ~e~l~~~--~~p~~~~~~~ln~aR~~~~~Y~~~~Dg~t~~~~~k~~i~~l~~~p~~ 214 (215)
+.+++++ .+|++| |+.++++.||.. ||+.|+ |..||.++|++|+-
T Consensus 674 ~lVl~~~~~~ip~~~-----tf~~V~ksFYy~---ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 674 ELALSESDTFRDVSI-----TFLDVAKAFYYF---ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp HHHHSCCTTTHHHHH-----HHHHHHHHHHHH---HHHTTS-CHHHHHHHHHSCCC
T ss_pred HHHhccCCCCCCCcc-----cHHHHHHHHHhh---hcCCHH-HHHHHHHHHcCccc
Confidence 9999864 799999 999999999984 799998 99999999999983
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.42 E-value=1.1e-12 Score=116.03 Aligned_cols=144 Identities=17% Similarity=0.145 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhhCCCCCChh
Q 028006 10 DIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDLGDFIATKD 89 (215)
Q Consensus 10 ~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~~e 89 (215)
..+.++=..+...-++.....+.++|.+|+.+++.|+.. .+..|+.++|...++.++|+.-.+.. -.+ |+.
T Consensus 129 ~al~dl~~rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~~~Y~~~rR~~sG~~E~~~~------~~~-P~~ 199 (374)
T 1yyq_A 129 ALVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGA------SLW-PKE 199 (374)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTCTTHHHHHHHHHHCHHHHHH------TTC-CTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHhhccHHHHHHH------hhc-ccc
Confidence 344555444444455567788999999999999999863 77789999999998888887543322 124 444
Q ss_pred hh-hh--hhcchHHHHHHHHHHHHhcCcccchHhhhc-CCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 028006 90 NF-EC--ILKNAKSLKATETIGRLMDDIAGYKFEQKR-GHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINEE 162 (215)
Q Consensus 90 ~~-~~--~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~-G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln~e 162 (215)
.+ +. .+.....++....++.|+|||.||.||... |+.+|+|..++.++|+|.++|++++.+++..+..++-+.
T Consensus 200 ~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~g~S~~eAl~~v~~~~~~~~~r~~~~ 276 (374)
T 1yyq_A 200 QFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAV 276 (374)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 11 122345677777899999999999999984 999999999999999999999999999999998888653
No 17
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=94.72 E-value=0.33 Score=41.04 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=80.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhh--CCCCCChhhhhhhhcchHHHHH
Q 028006 26 YGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDL--GDFIATKDNFECILKNAKSLKA 103 (215)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~~e~~~~~~~~~~i~~~ 103 (215)
..+..+.+.....+.|-..+..|... .||.++|++.-..-+|.-+..+ +..+. +. . +++..+.+ ..+-+.
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga~lag-~-~~~~~~~l---~~~g~~ 198 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGAYTGG-A-EEELAERF---SHFGNA 198 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHHHHTT-C-CHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcC-C-CHHHHHHH---HHHHHH
Confidence 45566667777788888888877543 4899999988665665544322 22221 22 3 44444433 456778
Q ss_pred HHHHHHHhcCcccchHhh-----hcCCCcchhhHHhhcCCC--CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH-HHHH
Q 028006 104 TETIGRLMDDIAGYKFEQ-----KRGHNPSAVECYKNQHGV--SEEEAVKELLLEVANSWKDINEELLNPTTVPL-PMLQ 175 (215)
Q Consensus 104 ~~~i~rL~NDi~S~~~E~-----~~G~~~n~V~~ym~e~g~--s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~-~~~~ 175 (215)
.+...-+.||+..+.... ..|.. ++..+|..+.+- ..+.|.+.+.+.++++.+.+. .+|. +.++
T Consensus 199 lGlaFQI~DDilD~~~~~~gkd~~~gk~-Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~-------~lp~~~~~~ 270 (295)
T 3ipi_A 199 LGTAYQIVDDILEFLEVVEGKESKFTSE-TLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE-------TFRECPARD 270 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------C-CHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT-------TSCCSHHHH
T ss_pred HHHHHHHHHHHHHhcCCccCCCcccCcc-cHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH-------hCCCchHHH
Confidence 888999999998885433 22333 667777655431 145666666666676665554 3453 4455
Q ss_pred HHHHHhhh
Q 028006 176 RLLYFARS 183 (215)
Q Consensus 176 ~~ln~aR~ 183 (215)
...++++.
T Consensus 271 ~L~~l~~~ 278 (295)
T 3ipi_A 271 KLFQITDY 278 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 18
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=94.41 E-value=0.61 Score=40.53 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=67.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh-hCCCCCChhhhhhhhcchHHHHHH
Q 028006 26 YGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD-LGDFIATKDNFECILKNAKSLKAT 104 (215)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~~e~~~~~~~~~~i~~~~ 104 (215)
..+..+.+.+..++.+-..+..|.... ||.++|++.-..-+|.-+..++..-+ ++. . +++..+.+ ..+-+..
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag-a-~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG-A-APEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT-C-CHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-C-CHHHHHHH---HHHHHHH
Confidence 466777888899999999999987655 99999999866555555433222111 121 3 44444443 4567788
Q ss_pred HHHHHHhcCcccchHh-----------hhcCCCcchhhHHhhcC
Q 028006 105 ETIGRLMDDIAGYKFE-----------QKRGHNPSAVECYKNQH 137 (215)
Q Consensus 105 ~~i~rL~NDi~S~~~E-----------~~~G~~~n~V~~ym~e~ 137 (215)
+...-+.||+..+.-. ...|.. ++..+|..++
T Consensus 233 G~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 8889999999877432 233444 6666665544
No 19
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=93.68 E-value=2.2 Score=36.45 Aligned_cols=90 Identities=12% Similarity=-0.050 Sum_probs=59.8
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh-hCCCCCChhhhhhhhcchHHH
Q 028006 23 GRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD-LGDFIATKDNFECILKNAKSL 101 (215)
Q Consensus 23 g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~~e~~~~~~~~~~i~ 101 (215)
+....+..+.+.+..++.|-..+..|.. +..||.++|++.-..-+|.-+..++..-+ ++. . +++..+.+ ..+-
T Consensus 130 ~~~~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~-~~~~~~~l---~~~g 203 (334)
T 3rmg_A 130 NNYEIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ-V-GEEEVAFA---RLLG 203 (334)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT-C-CHHHHHHH---HHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC-C-CHHHHHHH---HHHH
Confidence 4445677778888899999998888853 34589999999876666655433322111 121 3 44444433 5577
Q ss_pred HHHHHHHHHhcCcccch
Q 028006 102 KATETIGRLMDDIAGYK 118 (215)
Q Consensus 102 ~~~~~i~rL~NDi~S~~ 118 (215)
+..+...-+.||+..+.
T Consensus 204 ~~lG~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 204 EYIGICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccCC
Confidence 88899999999998875
No 20
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=93.02 E-value=3.5 Score=35.44 Aligned_cols=91 Identities=9% Similarity=-0.119 Sum_probs=59.9
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhh-CCCCCChhhhhhhhcchHHH
Q 028006 23 GRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDL-GDFIATKDNFECILKNAKSL 101 (215)
Q Consensus 23 g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~~e~~~~~~~~~~i~ 101 (215)
+....+..+.+.....+.|-..+..|.. +..||.++|++.-..-+|.-+..+ +..|. --.. +++..+.+ ..+-
T Consensus 148 ~~~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag~-~~~~~~~l---~~~g 221 (345)
T 3oyr_A 148 NSMKALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGAVSAGV-DVAKSEAL---RDYG 221 (345)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTC-CHHHHHHH---HHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcCC-CHHHHHHH---HHHH
Confidence 4435677778888889999988888743 445899999998766666554332 22221 1113 54544443 5567
Q ss_pred HHHHHHHHHhcCcccchH
Q 028006 102 KATETIGRLMDDIAGYKF 119 (215)
Q Consensus 102 ~~~~~i~rL~NDi~S~~~ 119 (215)
+..+...-+.||+..+.-
T Consensus 222 ~~lG~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 222 LNLGLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 888999999999988853
No 21
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=92.48 E-value=4.7 Score=34.55 Aligned_cols=89 Identities=15% Similarity=0.028 Sum_probs=59.0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhh--CCCCCChhhhhhhhcchHH
Q 028006 23 GRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDL--GDFIATKDNFECILKNAKS 100 (215)
Q Consensus 23 g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~~e~~~~~~~~~~i 100 (215)
+....+..+.+.....+.+-..+..|.. +..||.++|++.-..-+|.-+..+ +..+. +. . +++..+.+ ..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag-~-~~~~~~~l---~~~ 208 (341)
T 3mzv_A 136 GNMRVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAA-TEVGGIIGG-A-PEDQVQAL---FDY 208 (341)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-C-CHHHHHHH---HHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC-C-CHHHHHHH---HHH
Confidence 4445667777888889999998888854 456899999987665555544322 22221 21 3 44444433 456
Q ss_pred HHHHHHHHHHhcCcccch
Q 028006 101 LKATETIGRLMDDIAGYK 118 (215)
Q Consensus 101 ~~~~~~i~rL~NDi~S~~ 118 (215)
-+..+...-+.||+..+.
T Consensus 209 g~~lG~aFQI~DD~ld~~ 226 (341)
T 3mzv_A 209 GDALGIAFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 788888999999988774
No 22
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=90.55 E-value=6.7 Score=32.66 Aligned_cols=121 Identities=9% Similarity=-0.070 Sum_probs=79.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHH--HhhCCCCCChhhhhhhhcchHHHHH
Q 028006 26 YGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASF--VDLGDFIATKDNFECILKNAKSLKA 103 (215)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~~e~~~~~~~~~~i~~~ 103 (215)
..+..+.+.....+.|-..+..|......||.++|++.-..-+|.-+..++.. ...| . +++ . ...+-+.
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~-~~~---~---l~~~g~~ 204 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--X-DHT---X---MXLLGEX 204 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--C-CCH---H---HHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--C-Chh---H---HHHHHHH
Confidence 35666677778899999999999765447899999998665555544322221 1223 2 333 2 2456778
Q ss_pred HHHHHHHhcCcccchHhh-hcCC-------CcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028006 104 TETIGRLMDDIAGYKFEQ-KRGH-------NPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINE 161 (215)
Q Consensus 104 ~~~i~rL~NDi~S~~~E~-~~G~-------~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln~ 161 (215)
.+...-+.||+..+.-.. ..|. -.+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 205 lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 205 FGVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999886442 2232 12344333 3688999999999999988875
No 23
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=90.50 E-value=2.2 Score=35.98 Aligned_cols=111 Identities=6% Similarity=-0.012 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHH--HhhCCCCCChhhhhhhhcchHHHHHHHHHHHHhcC
Q 028006 36 QELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASF--VDLGDFIATKDNFECILKNAKSLKATETIGRLMDD 113 (215)
Q Consensus 36 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~ND 113 (215)
...+.+-..+..|... .+|.++|++.-..-+|.-+..++.. ...| . +++..+.+ ..+-...+...-+.||
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~-~~~~~~~l---~~~g~~lG~aFQI~DD 219 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--V-DDTTKEHL---ESYSYHLGMMFQIKDD 219 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--C-CHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--C-CHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4567777777777543 7899999998666665544322221 1123 4 55554443 5577888999999999
Q ss_pred cccchHhh-----------hcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028006 114 IAGYKFEQ-----------KRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINE 161 (215)
Q Consensus 114 i~S~~~E~-----------~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln~ 161 (215)
+..+.-.. ..|.. +...+|- .+.|.+.+.+.++++.+.+..
T Consensus 220 ilD~~~d~~~~GK~~g~Dl~~gK~-T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 220 LLDCYGDEAKLGKKVGSDLENNKS-TYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHHCC-------------C-CHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHhCCCcchHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 98875432 22222 5555543 578889999999999877764
No 24
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=90.46 E-value=4.3 Score=34.60 Aligned_cols=111 Identities=7% Similarity=-0.010 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhh--CCCCCChhhhhhhhcchHHHHHHHHHHHHhcC
Q 028006 36 QELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDL--GDFIATKDNFECILKNAKSLKATETIGRLMDD 113 (215)
Q Consensus 36 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~ND 113 (215)
...+.|-..+..|.. ..||.++|+..-..-+|.-+. ..+..|. +... +++..+.+ ..+-+..+...-+.||
T Consensus 158 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~-~a~~~Ga~lag~a-~~~~~~~l---~~~g~~lGlAFQI~DD 230 (324)
T 3ts7_A 158 AGMVGGQAIDLASVG--KKLDLPGLENMHIRKTGALIR-ASVRLACLARPGL-PAEQFDRL---DHYAKCIGLAFQIQDD 230 (324)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHH-HHHHHHHTTSTTC-CHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhhHHHHHH-HHHHHHHHHcCCC-CHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 346777777777754 378999999985555554443 2233332 2213 44444433 4567788888999999
Q ss_pred cccchHh-----------hhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 114 IAGYKFE-----------QKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 114 i~S~~~E-----------~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
+..+.-+ ...|.. +++.+| ..|.|.+.+.+.++++...+.
T Consensus 231 iLD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 231 ILDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 9877432 222333 555555 468888888898888876554
No 25
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=90.20 E-value=2.6 Score=35.51 Aligned_cols=112 Identities=10% Similarity=-0.002 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhh--CCCCCChhhhhhhhcchHHHHHHHHHHHHhcC
Q 028006 36 QELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDL--GDFIATKDNFECILKNAKSLKATETIGRLMDD 113 (215)
Q Consensus 36 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~ND 113 (215)
...+.|-..+..|. +..||.++|+..-..-+|.-+.. .+..|. +... +++..+. ...+-+..+...-+.||
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~-~~~~ga~lag~~-~~~~~~~---l~~~g~~lG~aFQI~DD 230 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRC-AIRLGALAAGEK-GRAMLPH---LDRYAEAVGLAFQVQDD 230 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHH-HHHHHHHTTTHH-HHTTHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHH-HHHHHHHHcCCC-CHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 35677777777875 45789999999865444544332 222222 1112 3333333 24567788889999999
Q ss_pred cccchHh-----------hhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028006 114 IAGYKFE-----------QKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINE 161 (215)
Q Consensus 114 i~S~~~E-----------~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln~ 161 (215)
+..+.-+ ...|.. +...+| ..+.|.+.+.+.++++.+.++.
T Consensus 231 ilD~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 231 ILDIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9877532 122333 555555 3688899999999999877763
No 26
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=90.10 E-value=3.8 Score=34.56 Aligned_cols=110 Identities=11% Similarity=0.015 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh--hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCc
Q 028006 37 ELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD--LGDFIATKDNFECILKNAKSLKATETIGRLMDDI 114 (215)
Q Consensus 37 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi 114 (215)
..+.|-..+..|. +..||.++|...-..-+|.-+.. .+..| ++ .. +++..+.+ ..+-+..+...-+.||+
T Consensus 157 ~~~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~-~~~~ga~la-ga-~~~~~~~l---~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 157 GMVSGQMGDIEGE--KVSLTLEELAAVHEKKTGALIEF-ALIAGGVLA-NQ-TEEVIGLL---TQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp THHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHH-HHHHHHHHT-TC-CHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--CCCCCHHHHHHHHHcCcHHHHHH-HHHHHHHHc-CC-CHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4566777776764 34789999998754444443332 22222 12 23 44444433 55777888899999999
Q ss_pred ccchHh-----------hhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028006 115 AGYKFE-----------QKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINE 161 (215)
Q Consensus 115 ~S~~~E-----------~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln~ 161 (215)
..+.-+ ...|.. +...++ ..+.|.+.+.+.++++.+.++.
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 877432 222332 444444 4688999999999999988774
No 27
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=89.97 E-value=2.2 Score=35.98 Aligned_cols=109 Identities=13% Similarity=-0.026 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHH--HHhhCCCCCChhhhhhhhcchHHHHHHHHHHHHhcC
Q 028006 36 QELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVAS--FVDLGDFIATKDNFECILKNAKSLKATETIGRLMDD 113 (215)
Q Consensus 36 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~--~~~~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~ND 113 (215)
...+.+-..+..|...+..||.++|+..-..-+|.-+..++. ....| . +++ . ...+-+..+...-+.||
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~-~~~---~---l~~~g~~lG~aFQI~DD 217 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--A-DRG---P---LTAYATALGLAFQIADD 217 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--C-CCH---H---HHHHHHHHHHHHHHHTT
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--C-CHH---H---HHHHHHHHHHHHHHHHH
Confidence 457778888888876677899999999755555544332211 11123 2 333 1 24467888999999999
Q ss_pred cccchHhh-----------hcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 114 IAGYKFEQ-----------KRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 114 i~S~~~E~-----------~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
+..+.-+. ..|.. +...++ ..+.|.+.+.+.++++.+.+.
T Consensus 218 ilD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~ 268 (297)
T 3m0g_A 218 ILDVEGNEEAAGKRLGKDAEAHKA-TFVSLL------GLAGAKSRAADLVAEAEAALA 268 (297)
T ss_dssp CC---------------------C-CHHHHH------CSSHHHHHHHHHHHHHHHHTG
T ss_pred HHhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 99885432 22222 455444 247788888999998887765
No 28
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=89.10 E-value=5 Score=34.24 Aligned_cols=85 Identities=13% Similarity=0.039 Sum_probs=57.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHH--HhhCCCCCChhhhhhhhcchHHHHHH
Q 028006 27 GIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASF--VDLGDFIATKDNFECILKNAKSLKAT 104 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~~e~~~~~~~~~~i~~~~ 104 (215)
.+..+-+.....+.|-..+..|.... ..|.++|++.-..-+|.-+..++.. ...| . +++..+.+ ..+-...
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~-~~~~~~~l---~~~g~~l 210 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--D-NEEYIKAL---SSWGRNV 210 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--C-CHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--C-CHHHHHHH---HHHHHHH
Confidence 55666777888999999999996533 4599999998766665554432221 1123 3 54544443 5577888
Q ss_pred HHHHHHhcCcccch
Q 028006 105 ETIGRLMDDIAGYK 118 (215)
Q Consensus 105 ~~i~rL~NDi~S~~ 118 (215)
+...-+.||+..+.
T Consensus 211 G~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 211 GIAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998875
No 29
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=88.77 E-value=8 Score=33.00 Aligned_cols=91 Identities=11% Similarity=-0.073 Sum_probs=56.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhhCCCCCChhhhhhhhcchHHHHH
Q 028006 24 RSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKA 103 (215)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~~e~~~~~~~~~~i~~~ 103 (215)
....+..+.+....++.+-..+..|.. +..+|.++|++.-..-+|.-+..++..-++--.. +++..+.+ ..+-+.
T Consensus 151 ~~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~-~~~~~~~l---~~~g~~ 225 (348)
T 3apz_A 151 NTEVVALLATAVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQ-TAEVAVLA---FEYGRN 225 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTC-CHHHHHHH---HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCc-CHHHHHHH---HHHHHH
Confidence 334566677777888888877766643 2357999999986555555443322211111123 44444433 456678
Q ss_pred HHHHHHHhcCcccchH
Q 028006 104 TETIGRLMDDIAGYKF 119 (215)
Q Consensus 104 ~~~i~rL~NDi~S~~~ 119 (215)
.+...-+.||+..+.-
T Consensus 226 lG~aFQi~DD~lD~~g 241 (348)
T 3apz_A 226 LGLAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccC
Confidence 8888999999988753
No 30
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=88.75 E-value=3.9 Score=34.72 Aligned_cols=111 Identities=10% Similarity=0.036 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhh--CCCCCChhhhhhhhcchHHHHHHHHHHHHhcCc
Q 028006 37 ELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDL--GDFIATKDNFECILKNAKSLKATETIGRLMDDI 114 (215)
Q Consensus 37 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi 114 (215)
..+.|-..+..|. +..||.++|+..-..-+|.-+.. .+..|. +... +++..+.+ ..+-+..+...-+.||+
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~-a~~~Ga~lag~a-~~~~~~~l---~~~g~~lGlAFQI~DDi 224 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKA-SVRMGALSTGQV-KPEQLAKL---DAYAHAIGLAFQVQDDI 224 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHH-HHHHHHHTTTCC-CHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHH-HHHHHHHHcCCC-CHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3566777777774 44589999998865455544332 222222 2223 44444433 45678888899999999
Q ss_pred ccchHh-----------hhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028006 115 AGYKFE-----------QKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINE 161 (215)
Q Consensus 115 ~S~~~E-----------~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln~ 161 (215)
..+.-+ ...|.. ++..+| ..|.|.+.+++.++++.+.+..
T Consensus 225 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 225 IDLTSDTETLGKTQFSDAEANKA-TYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HHTC----------------CCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhccCChHhhCCCcchHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 887432 122333 555555 3688999999999999887764
No 31
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=88.46 E-value=4 Score=34.93 Aligned_cols=111 Identities=14% Similarity=0.015 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHH--HhhCCCCCChhhhhhhhcchHHHHHHHHHHHHhcC
Q 028006 36 QELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASF--VDLGDFIATKDNFECILKNAKSLKATETIGRLMDD 113 (215)
Q Consensus 36 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~ND 113 (215)
...+.+-..+..|... .+|.++|++.-..-+|.-+...+.. +..| . +++..+.+ ..+-+..+...-+.||
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a-~~~~~~~l---~~~g~~lGlAFQI~DD 263 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--S-NQAERQRL---RLFGEKIGLSFQLADD 263 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--C-CHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--C-CHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 5577888888888654 7899999998766666544322221 1123 3 55544443 5567788899999999
Q ss_pred cccchHhh-----------hcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028006 114 IAGYKFEQ-----------KRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINE 161 (215)
Q Consensus 114 i~S~~~E~-----------~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln~ 161 (215)
+..+.-.. ..|.. ++..+| ..|.|.+.+.+.++++.+.+..
T Consensus 264 iLD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 264 LLDLTADAATMGKATGKDAARGKG-TLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHHC-----------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHhcCCHHHhCCCcchHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98875321 22322 555444 2688999999999999877764
No 32
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=88.05 E-value=8.9 Score=32.26 Aligned_cols=110 Identities=10% Similarity=0.001 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh--hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcc
Q 028006 38 LIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD--LGDFIATKDNFECILKNAKSLKATETIGRLMDDIA 115 (215)
Q Consensus 38 ~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~ 115 (215)
.+.+-..+..|.. ..||.++|...-..-+|.-+.. .+..| ++... +++..+.+ ..+-+..+...-+.||+.
T Consensus 154 ~~~GQ~lDl~~~~--~~~s~~~y~~i~~~KTg~L~~~-~~~~ga~lag~~-~~~~~~~l---~~~g~~lGlaFQI~DDil 226 (304)
T 3lsn_A 154 MVGGQAIDLGSVG--LKLDQQALEYMHRHKTGALIEA-SVILGALASGRA-EKGELKAL---QTYAQAIGLAFQVQDDIL 226 (304)
T ss_dssp HHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHH-HHHHHHHHTTCC-CHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccC--CCCCHHHHHHHHHhhhHHHHHH-HHHHHHHHcCCC-CHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 6677777777754 3589999998854444443332 22222 22222 33333333 556778889999999998
Q ss_pred cchHhh-hcCC-----C----cchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 116 GYKFEQ-KRGH-----N----PSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 116 S~~~E~-~~G~-----~----~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
.+.-+. .-|. . .+...+| ..+.|.+.+++.++++.+.++
T Consensus 227 D~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 227 DVESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 885432 2222 1 2555554 468889999999988886665
No 33
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=88.05 E-value=6.4 Score=33.29 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhhCCC-CCChhhhhhhhcchHHHHHHHHHHHHhcCcc
Q 028006 37 ELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDLGDF-IATKDNFECILKNAKSLKATETIGRLMDDIA 115 (215)
Q Consensus 37 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~-l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~ 115 (215)
..+.|-..+..|... ..||.++|...-..-+|.-+.+++....++.. . +++..+.+ ..+-+..+...-+.||+.
T Consensus 159 ~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a-~~~~~~~l---~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 159 GMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEV-SEQIKSAL---RTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp THHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSC-CHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC-CHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 566777777777432 37899999988654444444333332223332 4 55554443 556778888999999998
Q ss_pred cchHh-----------hhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 116 GYKFE-----------QKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 116 S~~~E-----------~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
.+.-+ ...|.. +...+| ..+.|.+.+.+.++++.+.+.
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 77532 122322 444443 468899999999988886654
No 34
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=86.94 E-value=5.7 Score=34.21 Aligned_cols=87 Identities=11% Similarity=-0.041 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh----------CCC-CCChHHhhhhhhhhhhhHHHHHHHHHhh-CCCCCChhhhhhh
Q 028006 27 GIPYAKQMMQELIILYFTEAKWLY----------KGY-VPTFDEYKSVALRSIGLRTLAVASFVDL-GDFIATKDNFECI 94 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~Ea~w~~----------~~~-~Ps~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~~e~~~~~ 94 (215)
.+..+.+.....+.|-..+..|.. .+. .||.++|++.-..-+|.-+..++ ..|. --.. +++..+.+
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~-~~~~~~~l 210 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAA-KWGVLSVSD-DRGLAEAA 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHCC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCC-CHHHHHHH
Confidence 566777888889999999988862 233 67999999986666655543322 2221 0013 44444433
Q ss_pred hcchHHHHHHHHHHHHhcCcccch
Q 028006 95 LKNAKSLKATETIGRLMDDIAGYK 118 (215)
Q Consensus 95 ~~~~~i~~~~~~i~rL~NDi~S~~ 118 (215)
..+-+..+...-+.||+..+-
T Consensus 211 ---~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 211 ---WNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHhc
Confidence 456778888888999988764
No 35
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=85.70 E-value=11 Score=31.83 Aligned_cols=109 Identities=9% Similarity=0.010 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh--hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCc
Q 028006 37 ELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD--LGDFIATKDNFECILKNAKSLKATETIGRLMDDI 114 (215)
Q Consensus 37 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi 114 (215)
..+.+-..+..|. +..+|.++|...-..-+|.-+..+ +..| ++. . +++..+.+ ..+-+..+...-+.||+
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~ga~lag-a-~~~~~~~l---~~~g~~lGlaFQI~DDi 227 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYA-VQAGLILGQ-A-PEAQWPAY---LQFADAFGLAFQIYDDI 227 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-C-CGGGHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHH-HHHHHHHcC-C-CHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4566767666764 346899999988544444433322 2222 122 3 44444433 55677888889999999
Q ss_pred ccchHh-----------hhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 115 AGYKFE-----------QKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 115 ~S~~~E-----------~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
..+.-. ...|.. +...+| ..+.|.+..+++++++.+.+.
T Consensus 228 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~ 277 (309)
T 3pde_A 228 LDVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQ 277 (309)
T ss_dssp HHHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 877422 222322 444444 357788888999999987776
No 36
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=85.06 E-value=8.5 Score=32.72 Aligned_cols=112 Identities=13% Similarity=0.021 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh--hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcC
Q 028006 36 QELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD--LGDFIATKDNFECILKNAKSLKATETIGRLMDD 113 (215)
Q Consensus 36 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~ND 113 (215)
...+.+-..+..|.. +..||.++|...-..-+|.-+.. .+..| ++ .. +++..+.+ ..+-+..+...-+.||
T Consensus 180 ~~m~~GQ~lDl~~~~-~~~~t~~~y~~i~~~KTa~L~~~-a~~~Ga~la-ga-~~~~~~~l---~~~g~~lGlAFQI~DD 252 (324)
T 3uca_A 180 DGMIGGQIVDIINED-KEEISLKELDYMHLKKTGELIKA-SIMSGAVLA-EA-SEGDIKKL---EGFGYKLGLAFQIKDD 252 (324)
T ss_dssp TTHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHH-HHHHHHHHT-TC-CHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHH-HHHHHHHHc-CC-CHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 346677777777743 23689999998854444443332 22222 12 23 44444433 5567788889999999
Q ss_pred cccchHh-----------hhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028006 114 IAGYKFE-----------QKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINE 161 (215)
Q Consensus 114 i~S~~~E-----------~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln~ 161 (215)
+..+.-. ...|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 253 iLD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 253 ILDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9877422 222322 444444 4689999999999999988764
No 37
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=84.52 E-value=18 Score=30.74 Aligned_cols=103 Identities=13% Similarity=0.027 Sum_probs=63.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhh--CCCCCChhhhhhhhcchHHHHH
Q 028006 26 YGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDL--GDFIATKDNFECILKNAKSLKA 103 (215)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~~e~~~~~~~~~~i~~~ 103 (215)
..+..+.+.....+.+-+.+..|.. +..||.++|++.-..-+|.-+.. .+..|. +. . +++..+.+ ..+-+.
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~-~~~~ga~lag-~-~~~~~~~l---~~~g~~ 215 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFAL-SCYQGAQLAG-A-PQSVIDRT---RDIGIA 215 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHH-HHHHHHHHTT-C-CHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHH-HHHHHHHHcC-C-CHHHHHHH---HHHHHH
Confidence 3566667778888888887777743 45689999998755555554332 222222 21 3 44444433 456677
Q ss_pred HHHHHHHhcCcccchH-----------hhhcCCCcchhhHHhhc
Q 028006 104 TETIGRLMDDIAGYKF-----------EQKRGHNPSAVECYKNQ 136 (215)
Q Consensus 104 ~~~i~rL~NDi~S~~~-----------E~~~G~~~n~V~~ym~e 136 (215)
.+...-+.||+..+.- ....|.. ++..+|..+
T Consensus 216 lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 216 IGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 7888888888876642 2345555 666666554
No 38
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=83.37 E-value=12 Score=31.22 Aligned_cols=112 Identities=12% Similarity=-0.010 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhhCC--CCCChhhhhhhhcchHHHHHHHHHHHHhcC
Q 028006 36 QELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDLGD--FIATKDNFECILKNAKSLKATETIGRLMDD 113 (215)
Q Consensus 36 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~--~l~~~e~~~~~~~~~~i~~~~~~i~rL~ND 113 (215)
...+.+-..+..|... .+|.++|+..-..-+|.-+.. .+..+.-. .. +++..+.+ ..+-+..+...-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~-~~~~ga~l~ag~-~~~~~~~l---~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRA-AVRLGALSAGDK-GRRALPVL---DKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHH-HHHHHHHTTTHH-HHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHH-HHHHHHHHhCCC-CHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3557777777777543 789999999865555554332 22232211 12 44444433 4567888899999999
Q ss_pred cccchHhh-----------hcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028006 114 IAGYKFEQ-----------KRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINE 161 (215)
Q Consensus 114 i~S~~~E~-----------~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln~ 161 (215)
+..+.-.. ..|.. +...+|- .+.|.+.+++.++++.+.+..
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~~------l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKS-TYPALLG------LEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCC-CHHHHHC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 98875321 22333 5554443 477888999999999988875
No 39
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=82.29 E-value=8.2 Score=32.60 Aligned_cols=112 Identities=10% Similarity=0.065 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhh--CCCCCChhhh-hhhhcchHHHHHHHHHHHHhc
Q 028006 36 QELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDL--GDFIATKDNF-ECILKNAKSLKATETIGRLMD 112 (215)
Q Consensus 36 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~~e~~-~~~~~~~~i~~~~~~i~rL~N 112 (215)
...+.+-..+..|. +..||.++|+..-..-+|.-+.+++ ..+. +. . +++.. +.+ ..+-+..+...-+.|
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~lga~lag-a-~~~~~~~~l---~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASL-IMGLVASG-I-KDEELFKWL---QAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHC-C-CCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHcC-C-CHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45667777777775 5678999999885544554433222 2221 11 3 44443 433 457788889999999
Q ss_pred CcccchHh-hhcCCCcchhhHHhhcCCC------CHHHHHHHHHHHHHHHHHHHH
Q 028006 113 DIAGYKFE-QKRGHNPSAVECYKNQHGV------SEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 113 Di~S~~~E-~~~G~~~n~V~~ym~e~g~------s~eeA~~~i~~~i~~~wk~ln 160 (215)
|+..+.-+ ..-|..... ++.-. ..+.|.+..+++++++.+.+.
T Consensus 231 DiLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99887643 223433211 22223 358888888888888887776
No 40
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=81.37 E-value=15 Score=31.45 Aligned_cols=86 Identities=10% Similarity=-0.040 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhh-CCCCCChhhhhhhhcchHHHHHHH
Q 028006 27 GIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDL-GDFIATKDNFECILKNAKSLKATE 105 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~~e~~~~~~~~~~i~~~~~ 105 (215)
.+..+-+....++.+-..+..|... ..||.++|+..-..-+|.-+..+ +..+. --.. +++..+.+ ..+-+..+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag~-~~~~~~~l---~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACA-SSIGAVLGGA-DERTADTL---EKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTC-CHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcCC-CHHHHHHH---HHHHHHHH
Confidence 4566777888899999989888543 47899999997666666554332 22222 0113 54544443 45678888
Q ss_pred HHHHHhcCcccch
Q 028006 106 TIGRLMDDIAGYK 118 (215)
Q Consensus 106 ~i~rL~NDi~S~~ 118 (215)
...-+.||+..+-
T Consensus 218 ~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 218 LAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8999999998764
No 41
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=81.14 E-value=23 Score=29.53 Aligned_cols=112 Identities=14% Similarity=0.058 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhh--CCCCCChhhhhhhhcchHHHHHHHHHHHHhc
Q 028006 35 MQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDL--GDFIATKDNFECILKNAKSLKATETIGRLMD 112 (215)
Q Consensus 35 ~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~N 112 (215)
....+.+-..+..|. +..||.++|...-..-+|.-+..+ +..+. + .. +++..+.+ ..+-+..+...-+.|
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~la-ga-~~~~~~~l---~~~g~~lGlaFQI~D 215 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAA-LKMGCEIC-EL-NNEESNQI---YKLGLKLGLIFQIND 215 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TC-CHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CC-CHHHHHHH---HHHHHHHHHHHHHHH
Confidence 445666766666764 357899999988554555443322 22221 2 23 44443433 557788889999999
Q ss_pred CcccchHh-hhcCCCc-------chhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 113 DIAGYKFE-QKRGHNP-------SAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 113 Di~S~~~E-~~~G~~~-------n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
|+..+.-. ...|... +.+.++ ..+.|.+..+++++++.+.++
T Consensus 216 DiLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 265 (291)
T 3npk_A 216 DIIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE 265 (291)
T ss_dssp HHHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 99887543 2223321 333322 357788888888888887776
No 42
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=80.88 E-value=19 Score=30.40 Aligned_cols=85 Identities=11% Similarity=0.036 Sum_probs=55.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH-HhCCCCCChHHhhhhhhhhhhhH-HHHHH--HHHhhCCCCCChhhhhhhhcchHHH
Q 028006 26 YGIPYAKQMMQELIILYFTEAKW-LYKGYVPTFDEYKSVALRSIGLR-TLAVA--SFVDLGDFIATKDNFECILKNAKSL 101 (215)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~Ea~w-~~~~~~Ps~eEYl~~~~~s~g~~-~~~~~--~~~~~g~~l~~~e~~~~~~~~~~i~ 101 (215)
..+..+.+.....+.|-..+..| ......||.++|++.-..-+|.- +...+ .....| . +++.. ...+-
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag--~-~~~~~-----l~~~g 201 (330)
T 1wmw_A 130 EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAG--K-TPPAA-----YEEGG 201 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--C-CCCHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcC--C-CHHHH-----HHHHH
Confidence 35666777788899999999999 65435689999998866555555 32222 112223 2 32322 24567
Q ss_pred HHHHHHHHHhcCcccch
Q 028006 102 KATETIGRLMDDIAGYK 118 (215)
Q Consensus 102 ~~~~~i~rL~NDi~S~~ 118 (215)
...+...-+.||+..+.
T Consensus 202 ~~lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 202 LRLGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCccc
Confidence 77888888888888764
No 43
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=79.65 E-value=16 Score=30.49 Aligned_cols=88 Identities=17% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhhCCCCCChhhhhhhhcchHHHH
Q 028006 23 GRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLK 102 (215)
Q Consensus 23 g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~~e~~~~~~~~~~i~~ 102 (215)
+....+..+.+.+..++.+-..+..|......||.++|++.-..-+|.-+.+++..-++--.. ++ ....+-+
T Consensus 108 ~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~-~~-------~l~~~g~ 179 (301)
T 2q80_A 108 DHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDY-KE-------DLKPLLN 179 (301)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-CS-------CCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCC-hH-------HHHHHHH
Confidence 333556667888899999999999998766689999999987666665443332222221112 31 1245667
Q ss_pred HHHHHHHHhcCcccch
Q 028006 103 ATETIGRLMDDIAGYK 118 (215)
Q Consensus 103 ~~~~i~rL~NDi~S~~ 118 (215)
..+...-+.||+..+.
T Consensus 180 ~lG~aFQi~DD~ld~~ 195 (301)
T 2q80_A 180 TLGLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhc
Confidence 7888888888887764
No 44
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=77.72 E-value=3.6 Score=34.44 Aligned_cols=109 Identities=10% Similarity=0.011 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhCC-CCCChHHhhhhhhhhhhhHHHHHHHHHh--hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcC
Q 028006 37 ELIILYFTEAKWLYKG-YVPTFDEYKSVALRSIGLRTLAVASFVD--LGDFIATKDNFECILKNAKSLKATETIGRLMDD 113 (215)
Q Consensus 37 ~~~~~~~~Ea~w~~~~-~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~ND 113 (215)
..+.|-..+..|...+ ..+|.++|...-..-+|.-+..+ +..| ++. . +++..+.+ ..+-...+...-+.||
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a-~~~ga~lag-~-~~~~~~~l---~~~g~~lG~aFQI~DD 234 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEAS-AVLGGIIGG-G-SDEEIERL---RKFARCIGLLFQVVDD 234 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-C-CHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcC-C-CHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3556666666664321 34688999887544444333222 2222 122 3 54544443 5567888999999999
Q ss_pred cccchHhhhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028006 114 IAGYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINE 161 (215)
Q Consensus 114 i~S~~~E~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln~ 161 (215)
+..+..+. -.+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 235 iLD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 235 ILDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98876443 23555444 4678888888888888876653
No 45
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=73.37 E-value=22 Score=30.25 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=57.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCC--CCCChHHhhhhhhhhhhhHHHHHHHHHh-hCCCCCChhhhhhhhcchHHHHH
Q 028006 27 GIPYAKQMMQELIILYFTEAKWLYKG--YVPTFDEYKSVALRSIGLRTLAVASFVD-LGDFIATKDNFECILKNAKSLKA 103 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~Ea~w~~~~--~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~~e~~~~~~~~~~i~~~ 103 (215)
.+..+.+....++.|-..+..|.... ..||.++|+..-..-+|.-+.+++..-+ ++. . +++ . .....+-+.
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~-~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP-S-SHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC-C-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-C-cHH-H---HHHHHHHHH
Confidence 56667778888999999999998765 5789999999876666654433222211 121 2 321 2 233567788
Q ss_pred HHHHHHHhcCcccch
Q 028006 104 TETIGRLMDDIAGYK 118 (215)
Q Consensus 104 ~~~i~rL~NDi~S~~ 118 (215)
.+...-+.||+..+.
T Consensus 206 lG~aFQi~DD~ld~~ 220 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLK 220 (340)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 899999999998775
No 46
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=72.15 E-value=24 Score=30.34 Aligned_cols=89 Identities=11% Similarity=-0.060 Sum_probs=58.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCC----CCChHHhhhhhhhhhhhH-HH--HHHHHHhhCCCCCChhhhhhhhcch
Q 028006 26 YGIPYAKQMMQELIILYFTEAKWLYKGY----VPTFDEYKSVALRSIGLR-TL--AVASFVDLGDFIATKDNFECILKNA 98 (215)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~----~Ps~eEYl~~~~~s~g~~-~~--~~~~~~~~g~~l~~~e~~~~~~~~~ 98 (215)
..+..+.+.....+.|-..+..|...+. .+|+++|+..-..-+|.- +. +.+..+..|. . +++..+.+ .
T Consensus 169 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~-~-~~~~~~~l---~ 243 (367)
T 1uby_A 169 HLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI-D-SKEEHENA---K 243 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC-C-CHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC-c-cHHHHHHH---H
Confidence 3566677777888899998988876543 679999999866555554 22 2222222231 3 44444443 5
Q ss_pred HHHHHHHHHHHHhcCcccchH
Q 028006 99 KSLKATETIGRLMDDIAGYKF 119 (215)
Q Consensus 99 ~i~~~~~~i~rL~NDi~S~~~ 119 (215)
.+-...+...-+.||+..+.-
T Consensus 244 ~~g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 244 AILLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 577888999999999988753
No 47
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=71.14 E-value=44 Score=28.76 Aligned_cols=87 Identities=7% Similarity=-0.023 Sum_probs=55.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCCCCh-HHhhhhhhhhhhhH-HH--HHHHHHhhCCCCCChhh--hhhhhcchH
Q 028006 26 YGIPYAKQMMQELIILYFTEAKWLYKGYVPTF-DEYKSVALRSIGLR-TL--AVASFVDLGDFIATKDN--FECILKNAK 99 (215)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~-eEYl~~~~~s~g~~-~~--~~~~~~~~g~~l~~~e~--~~~~~~~~~ 99 (215)
..+..+.+.....+.|-..+..|...+..+++ ++|+..-..-+|.- +. +.+.....| . +++. .+. ...
T Consensus 168 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag--~-~~~~~~~~~---l~~ 241 (368)
T 2her_A 168 KIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSE--I-QVSSAQLNL---IEA 241 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSC--C-CCCCSSTTT---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcC--C-ChhHHHHHH---HHH
Confidence 34666777788888888888888665534555 99998765555554 22 222222233 2 3332 333 255
Q ss_pred HHHHHHHHHHHhcCcccch
Q 028006 100 SLKATETIGRLMDDIAGYK 118 (215)
Q Consensus 100 i~~~~~~i~rL~NDi~S~~ 118 (215)
+-...+...-+.||+..+-
T Consensus 242 ~g~~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 242 ILYKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7788889999999998775
No 48
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=69.95 E-value=22 Score=29.92 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=58.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhhCCCCCChhhhhhhhcchHHHHHHH
Q 028006 26 YGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATE 105 (215)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~~e~~~~~~~~~~i~~~~~ 105 (215)
..+..+.+.....+.|-..+..|.. +..||.++|++.-..-+|.-+..++..-++--.. +++..+.+ ..+-...+
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~-~~~~~~~l---~~~g~~lG 204 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRF-NYPVSFTAYLRRINRKTAILIEASCHLGALSSQL-DEQSTYHI---KQFGHCIG 204 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC-CHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-CHHHHHHH---HHHHHHHH
Confidence 4566677778889999998888854 3358999999987666665543332222221123 54544443 55778888
Q ss_pred HHHHHhcCcccch
Q 028006 106 TIGRLMDDIAGYK 118 (215)
Q Consensus 106 ~i~rL~NDi~S~~ 118 (215)
...-+.||+..+.
T Consensus 205 ~afQi~DD~ld~~ 217 (325)
T 3aqb_B 205 MSYQIIDDILDYT 217 (325)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8999999998775
No 49
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=69.47 E-value=49 Score=27.72 Aligned_cols=102 Identities=8% Similarity=-0.177 Sum_probs=63.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhhC-CCCCChhhhhhhhcchHHHHHH
Q 028006 26 YGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDLG-DFIATKDNFECILKNAKSLKAT 104 (215)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g-~~l~~~e~~~~~~~~~~i~~~~ 104 (215)
..+..+.+.....+.|-..+..|.. +..||.++|++.-..-+|.-+..+ +..+.- -.. + .+ ....+-+..
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag~-~---~~---~l~~~g~~l 192 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEAS-LKSMAILLNK-D---AK---IYADFGLNF 192 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTS-C---HH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHH-HHHHHHHcCC-C---HH---HHHHHHHHH
Confidence 4566677778888999998888864 356899999987655555544322 222220 112 2 12 224567788
Q ss_pred HHHHHHhcCcccchHh-----------hhcCCCcchhhHHhhcC
Q 028006 105 ETIGRLMDDIAGYKFE-----------QKRGHNPSAVECYKNQH 137 (215)
Q Consensus 105 ~~i~rL~NDi~S~~~E-----------~~~G~~~n~V~~ym~e~ 137 (215)
+...-+.||+..+--. ...|.. ++..+|..++
T Consensus 193 G~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-T~p~i~al~~ 235 (315)
T 3tc1_A 193 GMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKT-TLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCC-CHHHHHHHTT
T ss_pred HHHHHHHHHHhcccCCHHHhCCChhhHHHcCCh-hHHHHHHHHh
Confidence 8888999998877432 222333 6666666655
No 50
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=68.41 E-value=27 Score=29.80 Aligned_cols=107 Identities=7% Similarity=-0.094 Sum_probs=65.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH-----------hCCC----CCChHHhhhhhhhhhhhH-HH--HHHHHHhhCCCCCC
Q 028006 26 YGIPYAKQMMQELIILYFTEAKWL-----------YKGY----VPTFDEYKSVALRSIGLR-TL--AVASFVDLGDFIAT 87 (215)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~Ea~w~-----------~~~~----~Ps~eEYl~~~~~s~g~~-~~--~~~~~~~~g~~l~~ 87 (215)
..+..+.+.....+.|-..+..|. ..+. .+|.++|+..-..-+|.- +. +.+..+..| .. +
T Consensus 151 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~~-~ 228 (362)
T 1yhl_A 151 DLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-AA-A 228 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CG-G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-CC-C
Confidence 356667777888899998888886 3223 489999999866555554 22 222222223 12 3
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHhcCcccchHh----------hhcCCCcchhhHHhhcCC
Q 028006 88 KDNFECILKNAKSLKATETIGRLMDDIAGYKFE----------QKRGHNPSAVECYKNQHG 138 (215)
Q Consensus 88 ~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E----------~~~G~~~n~V~~ym~e~g 138 (215)
++..+.+ ..+-...+...-+.||+..+.-. ...|.. ++..+|..++.
T Consensus 229 ~~~~~~l---~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~-T~p~l~al~~~ 285 (362)
T 1yhl_A 229 SVEMNLV---ERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKC-SWLAVTFLGKA 285 (362)
T ss_dssp GSCHHHH---HHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCC-CHHHHHHHTTC
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCc-hHHHHHHHHhC
Confidence 3333333 45778888999999999887532 122333 66666665543
No 51
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=68.39 E-value=9.8 Score=31.45 Aligned_cols=92 Identities=10% Similarity=0.009 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh--hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcc
Q 028006 38 LIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD--LGDFIATKDNFECILKNAKSLKATETIGRLMDDIA 115 (215)
Q Consensus 38 ~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~ 115 (215)
.+.+-..+..|.. ..||.++|...-..-+|.-+..+ +..| ++. . +++..+.+ ..+-+..+...-+.||+.
T Consensus 151 ~~~GQ~lDl~~~~--~~~t~~~y~~~i~~KTa~L~~~a-~~lGailag-a-~~~~~~~l---~~~G~~lG~aFQI~DD~~ 222 (274)
T 3kra_B 151 MISGLHREEEIVD--GNTSLDFIEYVCKKKYGEMHACG-AACGAILGG-A-AEEEIQKL---RNFGLYQGTLRGMMEMKN 222 (274)
T ss_dssp HHHHHHHHTTCCT--TSSCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-C-CHHHHHHH---HHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcC-C-CHHHHHHH---HHHHHHHHHHHHHHHhhc
Confidence 4566665556643 37899999986544444444322 2222 122 3 54544443 557788889999999971
Q ss_pred cchHhhhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028006 116 GYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDIN 160 (215)
Q Consensus 116 S~~~E~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln 160 (215)
. ..|++.+.+.++.+.+-+.|.
T Consensus 223 ~-----------------------~~~~~~~~~~~~~~~A~~~L~ 244 (274)
T 3kra_B 223 S-----------------------HQLIDENIIGKLKELALEELG 244 (274)
T ss_dssp T-----------------------SCCCCHHHHHHHHHHHHHHHT
T ss_pred c-----------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 1 225556666676676666654
No 52
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=68.38 E-value=28 Score=28.89 Aligned_cols=118 Identities=12% Similarity=0.029 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHH-hhCCCCCChhhhhhhhcchHHHHHHH
Q 028006 27 GIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFV-DLGDFIATKDNFECILKNAKSLKATE 105 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~-~~g~~l~~~e~~~~~~~~~~i~~~~~ 105 (215)
.+..+.+.+...+.|-..+..| .++|++.-..-+|.-+..++..- .++ . +++..+.+ ..+-+..+
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~-~~~~~~~l---~~~g~~lG 201 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--K-HYNTKQQM---LDVGKYLG 201 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--T-CGGGHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--C-CHHHHHHH---HHHHHHHH
Confidence 4555555666666665544433 68898876555555543222211 124 4 55554443 45677888
Q ss_pred HHHHHhcCcccchHhhh---cCCCcchhhHHhhcCCCCHHHH-HHHHHHHHHHHHHHHHH
Q 028006 106 TIGRLMDDIAGYKFEQK---RGHNPSAVECYKNQHGVSEEEA-VKELLLEVANSWKDINE 161 (215)
Q Consensus 106 ~i~rL~NDi~S~~~E~~---~G~~~n~V~~ym~e~g~s~eeA-~~~i~~~i~~~wk~ln~ 161 (215)
...-+.||+..+.-+.+ ++...+...+| .+. ..++| ...+.+.++++.+.+..
T Consensus 202 ~aFQi~DDilD~~~~~K~dl~~gk~Tlp~l~-~~~--g~~~a~~~~a~~~~~~A~~~L~~ 258 (289)
T 2azj_A 202 IIYQVIDDFVDYKTKKVEEIDGSAKQLFKYY-REG--KLEEYVRSVYLEYKQKYDELISN 258 (289)
T ss_dssp HHHHHHHHHHHHTTSCTTTCCTTGGGGHHHH-TTT--CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhcCCCChhhhcCcccHHHHH-HcC--CHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999887743211 11123666667 323 45677 45677778888777653
No 53
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=63.00 E-value=42 Score=27.90 Aligned_cols=87 Identities=16% Similarity=-0.020 Sum_probs=57.2
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhh--CCCCCChhhhhhhhcchHH
Q 028006 23 GRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDL--GDFIATKDNFECILKNAKS 100 (215)
Q Consensus 23 g~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~~e~~~~~~~~~~i 100 (215)
+....+..+.+.....+.|-..+..|.... ||.++|++.-..-+|.-+..+ +..+. +. . ++ +. ...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag-~-~~---~~---l~~~ 192 (299)
T 1v4e_A 124 GNNKLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLA-LQLPALLEG-E-LG---ED---LYNL 192 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT-C-CC---HH---HHHH
T ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHH-HHHHHHHcC-C-CH---HH---HHHH
Confidence 444567777888899999999999997654 999999988666555544322 22221 11 2 22 22 2346
Q ss_pred HHHHHHHHHHhcCcccchHh
Q 028006 101 LKATETIGRLMDDIAGYKFE 120 (215)
Q Consensus 101 ~~~~~~i~rL~NDi~S~~~E 120 (215)
-...+...-+.||+..+.-.
T Consensus 193 g~~lG~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 193 GVTIGTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHccCc
Confidence 67778888888888877543
No 54
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=60.32 E-value=69 Score=26.20 Aligned_cols=127 Identities=13% Similarity=0.002 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhhCCCCCChhhhhhhhcchHHHHHHHHHHHHhc
Q 028006 33 QMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMD 112 (215)
Q Consensus 33 ~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~N 112 (215)
+.+.+++.++- .+......+|++|+......+.|.--..++-.++ ..- .++..+. -...+...-|.|
T Consensus 108 ~~~~~li~g~~---~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g--~~~-~~~~~~~-------A~~lG~AlQltN 174 (293)
T 3acx_A 108 QSFYNLIDTVY---KDQHFTMFETDAELFGYCYGVAGTVGEVLTPILS--DHE-THQTYDV-------ARRLGESLQLIN 174 (293)
T ss_dssp HHHHHHHHHHH---HHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHC--SSC-CHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhC--CCC-cHHHHHH-------HHHHHHHHHHHH
Confidence 44566666663 3334456789988888877666655554444443 221 1222222 222333333333
Q ss_pred CcccchHhhhcCCCcchhhHHhhcCCCCHHH---------HHHHHHHHHHHHHHHHHHhhcCCCCCCHHH
Q 028006 113 DIAGYKFEQKRGHNPSAVECYKNQHGVSEEE---------AVKELLLEVANSWKDINEELLNPTTVPLPM 173 (215)
Q Consensus 113 Di~S~~~E~~~G~~~n~V~~ym~e~g~s~ee---------A~~~i~~~i~~~wk~ln~e~l~~~~~p~~~ 173 (215)
=+........+|.+ -.=.=-|.++|+|.++ ...-+..++..+...+.+..--...+|...
T Consensus 175 ilRDv~eD~~~gR~-YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~ 243 (293)
T 3acx_A 175 ILRDVGEDFENERI-YFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEA 243 (293)
T ss_dssp HHHCHHHHHHTTCC-CSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTH
T ss_pred HHHHHHHHHhCCcE-EeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHH
Confidence 22333344456654 1112346778999876 234455666666666654432223455543
No 55
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=59.14 E-value=9.1 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 028006 137 HGVSEEEAVKELLLEVANSWKDI 159 (215)
Q Consensus 137 ~g~s~eeA~~~i~~~i~~~wk~l 159 (215)
||++.+||...+.+.+++++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999988643
No 56
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=57.55 E-value=36 Score=29.25 Aligned_cols=88 Identities=15% Similarity=-0.026 Sum_probs=58.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCC----CCChHHhhhhhhhhhhhH-HH--HHHHHHhhCCCCCChhhhhhhhcch
Q 028006 26 YGIPYAKQMMQELIILYFTEAKWLYKGY----VPTFDEYKSVALRSIGLR-TL--AVASFVDLGDFIATKDNFECILKNA 98 (215)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~----~Ps~eEYl~~~~~s~g~~-~~--~~~~~~~~g~~l~~~e~~~~~~~~~ 98 (215)
..+..+.+.....+.|-..+..|...+. .+|+++|+..-..-+|.- +. +.+..+ ++... +++..+.+ .
T Consensus 176 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~-lag~a-~~~~~~~l---~ 250 (374)
T 2qis_A 176 NLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMY-MAGID-GEKEHANA---K 250 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHH-HTTCC-CHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHH-HcCCC-cHHHHHHH---H
Confidence 3566677778888899998888866544 389999999876655554 22 222222 22213 44544443 5
Q ss_pred HHHHHHHHHHHHhcCcccch
Q 028006 99 KSLKATETIGRLMDDIAGYK 118 (215)
Q Consensus 99 ~i~~~~~~i~rL~NDi~S~~ 118 (215)
.+-...+...-+.||+..+.
T Consensus 251 ~~g~~lG~aFQI~DDiLD~~ 270 (374)
T 2qis_A 251 KILLEMGEFFQIQDDYLDLF 270 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 57788899999999998775
No 57
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=52.08 E-value=19 Score=30.96 Aligned_cols=87 Identities=7% Similarity=0.015 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCC-ChHHhhhhhh-hhhhhH--HHHHHHHHhhCCCCCChhhhhhhhcchHHHHH
Q 028006 28 IPYAKQMMQELIILYFTEAKWLYKGYVP-TFDEYKSVAL-RSIGLR--TLAVASFVDLGDFIATKDNFECILKNAKSLKA 103 (215)
Q Consensus 28 ~~~~~~~~~~~~~~~~~Ea~w~~~~~~P-s~eEYl~~~~-~s~g~~--~~~~~~~~~~g~~l~~~e~~~~~~~~~~i~~~ 103 (215)
+..+.+.....+.|-..+-.|...+..+ |.++|++.-. -|++.- ..+.......|... +++..+.+ ..+-..
T Consensus 170 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~-~~~~~~~l---~~~g~~ 245 (368)
T 2q58_A 170 QKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQV-SSAQLNLI---EAILYK 245 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCC-CCSSTTTH---HHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCccc-chHHHHHH---HHHHHH
Confidence 3444455556666777677776655554 7788998744 444432 22233333344444 44444443 456778
Q ss_pred HHHHHHHhcCcccch
Q 028006 104 TETIGRLMDDIAGYK 118 (215)
Q Consensus 104 ~~~i~rL~NDi~S~~ 118 (215)
.+...-+.||+..+-
T Consensus 246 lG~aFQI~DDiLD~~ 260 (368)
T 2q58_A 246 LGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc
Confidence 899999999998764
No 58
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=48.22 E-value=1.1e+02 Score=24.99 Aligned_cols=127 Identities=15% Similarity=0.097 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHhhCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCc
Q 028006 35 MQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDI 114 (215)
Q Consensus 35 ~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi 114 (215)
+.+++.++.... .....+|++|+......+.|.--..++..+ |.. +++.... -...+...-|.|=+
T Consensus 106 ~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~--g~~--~~~~~~~-------A~~lG~AlQltNil 171 (294)
T 4hd1_A 106 FLRLIEANRRDQ---RKHTYDTWEDLRDYCRYSADPVGRLVLGIF--GCL--DDERARL-------SDATCTALQVANHM 171 (294)
T ss_dssp HHHHHHHHHHHH---HCSBCCSHHHHHHHHHHHTHHHHHHHHHHT--TCC--SHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc---ccCCCCCHHHHHHHHHhccchHHHHHHHHh--CCC--CHHHHHH-------HHHHHHHHHHHHHH
Confidence 455666664332 344567888877776666655444333333 322 2232222 12223333333333
Q ss_pred ccchHhhhcCCCcchhhHHhhcCCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 028006 115 AGYKFEQKRGHNPSAVECYKNQHGVSEEEA---------VKELLLEVANSWKDINEELLNPTTVPLPMLQR 176 (215)
Q Consensus 115 ~S~~~E~~~G~~~n~V~~ym~e~g~s~eeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~ 176 (215)
........+|.+ -.=.-.|.++|+|.++- ..-+..+++.+..-+.+..--...+|..+...
T Consensus 172 RDv~eD~~~gR~-YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r~~ 241 (294)
T 4hd1_A 172 QDIDRDLALGRI-YVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLARQ 241 (294)
T ss_dssp HTHHHHHHTTCB-CSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHHHH
T ss_pred HhchhhhccCce-eCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 333344556754 11134578899998752 22334444444433333322224578654433
No 59
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=46.20 E-value=80 Score=27.17 Aligned_cols=77 Identities=13% Similarity=0.010 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhhHHHHHHHHHh--hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcC
Q 028006 36 QELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAVASFVD--LGDFIATKDNFECILKNAKSLKATETIGRLMDD 113 (215)
Q Consensus 36 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~ND 113 (215)
...+.+-..+..|.... .||.++|+..-..-+|...+...+..| ++. . +++..+.+ ..+-+..+...-+.||
T Consensus 185 ~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag-a-~~~~~~~l---~~~G~~lG~AFQI~DD 258 (380)
T 3lk5_A 185 TEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAG-G-SPQLIDAL---LHYGHDIGIAFQLRDD 258 (380)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-C-CHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC-C-CHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 46677888888886543 679999999765555554222222222 111 3 44444443 5577888899999999
Q ss_pred cccch
Q 028006 114 IAGYK 118 (215)
Q Consensus 114 i~S~~ 118 (215)
+..+-
T Consensus 259 iLd~~ 263 (380)
T 3lk5_A 259 LLGVF 263 (380)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 88774
No 60
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=44.88 E-value=12 Score=26.27 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.6
Q ss_pred cchhhHHhhcCCCCHHHHHHHHHH
Q 028006 127 PSAVECYKNQHGVSEEEAVKELLL 150 (215)
Q Consensus 127 ~n~V~~ym~e~g~s~eeA~~~i~~ 150 (215)
.--|...|.|.|+|.++|++.+.+
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~ 89 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQE 89 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 466899999999999999988764
No 61
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=42.65 E-value=25 Score=23.47 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 028006 137 HGVSEEEAVKELLLEVANSW 156 (215)
Q Consensus 137 ~g~s~eeA~~~i~~~i~~~w 156 (215)
||.+.+||...+.+.++++.
T Consensus 10 hG~~~~eA~~~l~~fl~~a~ 29 (83)
T 2zqe_A 10 RGLTVAEALLEVDQALEEAR 29 (83)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 69999999999999998887
No 62
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=41.19 E-value=23 Score=24.05 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 028006 137 HGVSEEEAVKELLLEVANSWK 157 (215)
Q Consensus 137 ~g~s~eeA~~~i~~~i~~~wk 157 (215)
||++.+||+..+.+.++++..
T Consensus 14 HGl~v~eA~~~L~~~L~~~~~ 34 (96)
T 2d9i_A 14 HGLHVDEALEHLMRVLEKKTE 34 (96)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 799999999999999998864
No 63
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=39.78 E-value=41 Score=21.53 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHh--CCCchhhHHHHHH---HHHHHHHHHHHH
Q 028006 4 IVKALLDIYREAEEELAKE--GRSYGIPYAKQMM---QELIILYFTEAK 47 (215)
Q Consensus 4 ~~~~l~~~~~e~~~~~~~~--g~~~~~~~~~~~~---~~~~~~~~~Ea~ 47 (215)
-|..|+.+++|+.+++.+- |.....+.+++.. +.+++.++.|++
T Consensus 12 kY~~LL~VIeEmgkdIrpTYaGsk~~~ERLkR~I~hAr~LVrECl~E~e 60 (65)
T 2kw6_A 12 KYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETE 60 (65)
T ss_dssp HHHHHHHHHHHHTTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccchhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999998876553 6556677777654 667888888876
No 64
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=37.88 E-value=1.8e+02 Score=24.44 Aligned_cols=138 Identities=12% Similarity=0.059 Sum_probs=71.3
Q ss_pred CCCCCChHHhhhhhhhhhhhHHHHHHHHHhhCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccchHhhhcCCCcchh
Q 028006 51 KGYVPTFDEYKSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAV 130 (215)
Q Consensus 51 ~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V 130 (215)
....+|++|+...-..+.|.--..++-.++....- + ...+ .....-...+...-+.|=+........+|.+ -.=
T Consensus 132 ~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~-~-~~~~---~~~~~A~~lG~AlQltNilRDv~eD~~~gR~-YlP 205 (343)
T 3vj8_A 132 DKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFE-D-PLVG---EDTERANSMGLFLQKTNIIRDYLEDQQGGRE-FWP 205 (343)
T ss_dssp GCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSS-C-HHHH---HCHHHHHHHHHHHHHHHHHHTHHHHHHTTCC-CSC
T ss_pred cCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCc-c-chhh---hHHHHHHHHHHHHHHHHHHHHhHHHHhCCCe-eCC
Confidence 35678998888777767666655555555543221 1 1111 1123344555555555555555566667764 111
Q ss_pred hHHhhcCCCCHH---------HHHHHHHHHHHHHHHHHHHhhcCCCCCCHH-----HHHHHHHHh-hhhhhhcccCCCCC
Q 028006 131 ECYKNQHGVSEE---------EAVKELLLEVANSWKDINEELLNPTTVPLP-----MLQRLLYFA-RSGHFIYDDGHDRY 195 (215)
Q Consensus 131 ~~ym~e~g~s~e---------eA~~~i~~~i~~~wk~ln~e~l~~~~~p~~-----~~~~~ln~a-R~~~~~Y~~~~Dg~ 195 (215)
.=-|.++|++.+ .+..-+..++..+..-+.+..--...+|.. |.-. +-++ +++.-+|+.. |-|
T Consensus 206 ~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~~~~~~~~~ip-~~lA~~tL~~i~~~~-~v~ 283 (343)
T 3vj8_A 206 QEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIP-QVMAIATLAACYNNQ-QVF 283 (343)
T ss_dssp HHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHH-HHHHHHHHHHHTTCG-GGG
T ss_pred HHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhHHHHH-HHHHHHHHHHHHhCC-ccc
Confidence 224677888765 344556666666665554332211235542 2222 2222 2455667666 655
Q ss_pred C
Q 028006 196 T 196 (215)
Q Consensus 196 t 196 (215)
.
T Consensus 284 ~ 284 (343)
T 3vj8_A 284 K 284 (343)
T ss_dssp T
T ss_pred c
Confidence 3
No 65
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=36.29 E-value=91 Score=26.86 Aligned_cols=88 Identities=13% Similarity=0.063 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCC-----------------------CCCChHHhhhhhhhhhhhH---HHHHHHHHh
Q 028006 27 GIPYAKQMMQELIILYFTEAKWLYKG-----------------------YVPTFDEYKSVALRSIGLR---TLAVASFVD 80 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~Ea~w~~~~-----------------------~~Ps~eEYl~~~~~s~g~~---~~~~~~~~~ 80 (215)
.+..+.+.....+.|-..+..|.... ..+|+++|++.-..=+|.- ..+.+....
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ 258 (395)
T 3mav_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLL 258 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455555666677766666653321 2368999998755444443 222333333
Q ss_pred hCCCCCChhhhhhhhcchHHHHHHHHHHHHhcCcccch
Q 028006 81 LGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYK 118 (215)
Q Consensus 81 ~g~~l~~~e~~~~~~~~~~i~~~~~~i~rL~NDi~S~~ 118 (215)
.|-.. +++..+.+ ..+-...+...-+.||+..+-
T Consensus 259 ag~~~-d~~~~~~l---~~~g~~lG~aFQI~DDiLD~~ 292 (395)
T 3mav_A 259 AGIAV-DNLIYKKI---EDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp TTCCT-TCTHHHHH---HHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCcc-hhHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 34333 43444443 456677888899999987763
No 66
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=34.51 E-value=70 Score=20.67 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHh--CCCchhhHHHHHH---HHHHHHHHHHHH
Q 028006 4 IVKALLDIYREAEEELAKE--GRSYGIPYAKQMM---QELIILYFTEAK 47 (215)
Q Consensus 4 ~~~~l~~~~~e~~~~~~~~--g~~~~~~~~~~~~---~~~~~~~~~Ea~ 47 (215)
=|..|+.+++|+.+++.+- |.......+++.. +.+++.++.|++
T Consensus 16 KY~~LL~vIeEmgkdirPTyagsks~~ERLkRgI~hAr~LVRECl~e~e 64 (69)
T 2m1l_A 16 TYTDLLSVIEEMGKEIRPTYAGSKSAMERLKRGIIHARALVRECLAETE 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccccchhhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999876554 5545666776654 667788888776
No 67
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=33.77 E-value=27 Score=24.14 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=23.4
Q ss_pred CCCcchhhHHhhcCCCCHHHHHHHHHHH
Q 028006 124 GHNPSAVECYKNQHGVSEEEAVKELLLE 151 (215)
Q Consensus 124 G~~~n~V~~ym~e~g~s~eeA~~~i~~~ 151 (215)
|...|+|..+|+-.|+|-.||++.+.+.
T Consensus 65 g~gGd~i~fv~~~~~~sf~eA~~~La~~ 92 (103)
T 1d0q_A 65 GAGGNAFTFLMDIEGIPFVEAAKRLAAK 92 (103)
T ss_dssp CCEECHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4456889999998899999999888764
No 68
>4akk_A Nitrate regulatory protein; transcription; 2.14A {Klebsiella oxytoca}
Probab=32.67 E-value=36 Score=29.73 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCcccchHhhh-cCCCcchhhHHhhcCCCCHHHHHHHHHHHHHH
Q 028006 103 ATETIGRLMDDIAGYKFEQK-RGHNPSAVECYKNQHGVSEEEAVKELLLEVAN 154 (215)
Q Consensus 103 ~~~~i~rL~NDi~S~~~E~~-~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~ 154 (215)
....+-+|-+.+...+...+ |.-+.-+..+.|..+|+|+++|.+.+++.--+
T Consensus 346 ~~~~~~~l~~~~~~l~~~l~~r~~i~~Akg~lm~~~~~~e~~A~~~l~~~sm~ 398 (423)
T 4akk_A 346 QAHELQQLSGQLASLKDALEERKLIEKAKSVLMTYQGMQEEQAWQALRKMAMD 398 (423)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCcCHHHHHHHHHHHHHH
Confidence 34445556666666655543 34456778899999999999999999886543
No 69
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=30.74 E-value=44 Score=24.54 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=26.3
Q ss_pred hhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 028006 121 QKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWK 157 (215)
Q Consensus 121 ~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk 157 (215)
..+|+.. ++--.-=||++.+||...+.+.+.++..
T Consensus 39 Lr~G~~~--~~~~LDLHG~~~~EA~~~L~~fL~~a~~ 73 (137)
T 3qd7_X 39 LRSGKYP--QQASLNLLRQPVEECRKMVFSFIQQALA 73 (137)
T ss_dssp HHSCCCC--GGGEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCC--CCeEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5678752 3333445799999999999999998874
No 70
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=29.16 E-value=15 Score=26.64 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=21.2
Q ss_pred CcchhhHHhhcCCCCHHHHHHHHHHH
Q 028006 126 NPSAVECYKNQHGVSEEEAVKELLLE 151 (215)
Q Consensus 126 ~~n~V~~ym~e~g~s~eeA~~~i~~~ 151 (215)
.+..+.|||...|+|.++|++.++..
T Consensus 106 Tg~~~a~~l~~~g~~~~~a~~~~~~~ 131 (151)
T 1xri_A 106 TGCLVGCLRKLQKWCLTSIFDEYQRF 131 (151)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 34677899998899999999887653
No 71
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=29.04 E-value=2.7e+02 Score=23.81 Aligned_cols=86 Identities=7% Similarity=-0.056 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh-----------C----CCCCChHHhhhhhhhhhhhH-H--HHHHHHHhhCCCCCCh
Q 028006 27 GIPYAKQMMQELIILYFTEAKWLY-----------K----GYVPTFDEYKSVALRSIGLR-T--LAVASFVDLGDFIATK 88 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~Ea~w~~-----------~----~~~Ps~eEYl~~~~~s~g~~-~--~~~~~~~~~g~~l~~~ 88 (215)
.+..+.+.....+.+-..+..|.. . ...+|+++|+..-..-+|.- + .+.+..+..| . ++
T Consensus 180 ~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~lag--a-~~ 256 (390)
T 3dyh_A 180 LLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSE--A-LP 256 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT--C-GG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcC--C-Ch
Confidence 445556666777888887777731 1 13589999998766555553 2 2222222223 2 32
Q ss_pred hh-hhhhhcchHHHHHHHHHHHHhcCcccch
Q 028006 89 DN-FECILKNAKSLKATETIGRLMDDIAGYK 118 (215)
Q Consensus 89 e~-~~~~~~~~~i~~~~~~i~rL~NDi~S~~ 118 (215)
+. .+. ...+-+..+...-+.||+..+.
T Consensus 257 ~~~~~~---l~~~g~~lGlaFQI~DDiLD~~ 284 (390)
T 3dyh_A 257 TVDMGV---TEELAMLMGEYFQVQDDVMDCF 284 (390)
T ss_dssp GSCHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHhhc
Confidence 32 232 2456778888999999998764
No 72
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=28.94 E-value=1.2e+02 Score=20.12 Aligned_cols=39 Identities=15% Similarity=0.011 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhhhhhhhhhhh
Q 028006 29 PYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGL 70 (215)
Q Consensus 29 ~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~ 70 (215)
+.+.+..+++++.+. +-...-..|+-+||...+..+.-.
T Consensus 19 ~~~~e~~~~f~kd~~---rvlk~~~KPdr~Ef~~iak~t~iG 57 (80)
T 2ww9_B 19 EKLVEAPVEFVREGT---QFLAKCKKPDLKEYTKIVKAVGIG 57 (80)
T ss_dssp --CCHHHHHHHHHHH---HHHHSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHhcCCCHHHHHHHHHHHHHH
Confidence 334444555555543 223456789999999998766533
No 73
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=28.26 E-value=1.4e+02 Score=25.78 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-H----Hh--------------CCC----CCChHHhhhhhhhhhhhH---HHHHHHHHh
Q 028006 27 GIPYAKQMMQELIILYFTEAK-W----LY--------------KGY----VPTFDEYKSVALRSIGLR---TLAVASFVD 80 (215)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~Ea~-w----~~--------------~~~----~Ps~eEYl~~~~~s~g~~---~~~~~~~~~ 80 (215)
.+..+.+.....+.|-..+.. | +. ++. .||+++|+..-..-+|.- ..+.+..+.
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~l 258 (395)
T 2ihi_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLL 258 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 466677777888888887773 3 11 343 579999998865555543 222233233
Q ss_pred hCCCCCChhh--hhhhhcchHHHHHHHHHHHHhcCcccch
Q 028006 81 LGDFIATKDN--FECILKNAKSLKATETIGRLMDDIAGYK 118 (215)
Q Consensus 81 ~g~~l~~~e~--~~~~~~~~~i~~~~~~i~rL~NDi~S~~ 118 (215)
.| . +++. .+.+ ..+-+..+...-+.||+..+.
T Consensus 259 ag--~-~~~~~~~~~l---~~~g~~lG~aFQI~DD~LD~~ 292 (395)
T 2ihi_A 259 AG--I-AVDNLIYKKI---EDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp TT--C-CTTCTHHHHH---HHHHHHHHHHHHHHHHHHHSC
T ss_pred cC--C-ChhhHHHHHH---HHHHHHHHHHHHHHHHHHhhc
Confidence 33 2 3333 3332 457788888999999987763
No 74
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=24.96 E-value=52 Score=24.19 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=17.8
Q ss_pred cchhhHH-hhcCCCCHHHHHHHHHH
Q 028006 127 PSAVECY-KNQHGVSEEEAVKELLL 150 (215)
Q Consensus 127 ~n~V~~y-m~e~g~s~eeA~~~i~~ 150 (215)
+..|.+| |+.+|+|.++|++.++.
T Consensus 102 ~~vv~ayLm~~~~~s~~~A~~~v~~ 126 (161)
T 3emu_A 102 PAIVIAFLMYYQRLSFINAFNKVQG 126 (161)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3455455 45679999999998876
No 75
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=23.94 E-value=96 Score=21.65 Aligned_cols=46 Identities=33% Similarity=0.463 Sum_probs=31.8
Q ss_pred HHHHHHHhcCcccchHhhhcCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 028006 104 TETIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINEELLNPT 167 (215)
Q Consensus 104 ~~~i~rL~NDi~S~~~E~~~G~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~ 167 (215)
...-++|+-||+- .+...|-++.|+|+++|++.|.+.. |.|...|+
T Consensus 46 p~~WG~lLaDlar-----------HaA~a~a~~~~~s~~eal~rI~egF-------~~El~~pt 91 (101)
T 3ic3_A 46 PEMWGLLLVDIAR-----------HAARSYARESEYTEDEALERIVEMF-------EAELSRPT 91 (101)
T ss_dssp HHHHHHHHHHHHH-----------HHHHHHHHTSSCCHHHHHHHHHHHH-------HHHHTSCC
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHhcCCCHHHHHHHHHHHH-------HHHhcCCc
Confidence 3556677777763 2345677889999999998887754 46666553
No 76
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Probab=23.22 E-value=40 Score=25.49 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=21.1
Q ss_pred CCCcchhhHHhhcCCCCHHHHHHHHHH
Q 028006 124 GHNPSAVECYKNQHGVSEEEAVKELLL 150 (215)
Q Consensus 124 G~~~n~V~~ym~e~g~s~eeA~~~i~~ 150 (215)
|-.+..|.+|+...|++.++|++.++.
T Consensus 129 gRSg~~va~~L~~~g~~~~~a~~~vr~ 155 (189)
T 3rz2_A 129 GRAPVLVALALIEGGMKYEDAVQFIRQ 155 (189)
T ss_dssp TTHHHHHHHHHHTTTCCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 334577889999889999999877754
No 77
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=22.30 E-value=39 Score=24.45 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=19.8
Q ss_pred CcchhhHHhhcC-CCCHHHHHHHHHH
Q 028006 126 NPSAVECYKNQH-GVSEEEAVKELLL 150 (215)
Q Consensus 126 ~~n~V~~ym~e~-g~s~eeA~~~i~~ 150 (215)
.+..+.+|+... |++.++|++.+++
T Consensus 123 Tg~~~a~~L~~~~~~~~~~a~~~vr~ 148 (167)
T 3s4o_A 123 APILVALALVEYGNVSALDAIALIRE 148 (167)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 346677787777 9999999988865
No 78
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=20.70 E-value=76 Score=22.97 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 028006 136 QHGVSEEEAVKELLLEVANSWK 157 (215)
Q Consensus 136 e~g~s~eeA~~~i~~~i~~~wk 157 (215)
=||++.+||+..+...++++..
T Consensus 58 LHGl~v~EA~~~L~~fL~~a~~ 79 (135)
T 2vkc_A 58 LHGLHVDEALEHLMRVLEKKTE 79 (135)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHHHHHHHH
Confidence 3799999999999999988753
Done!