BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028008
(215 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/208 (92%), Positives = 202/208 (97%), Gaps = 3/208 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA--SFKVEAK-GEWLPGL 57
MATVTTQASAAVFRPCASKSRFLTGSSGKL REV++KP++SS+ SFKVEAK GEWLPGL
Sbjct: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLGREVSVKPMTSSSYRSFKVEAKKGEWLPGL 60
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
+SP+YL+GSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV GMLLPEVFTKIGI
Sbjct: 61 SSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGI 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSLPPN 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANG 205
EVGYPGGIFNPLNFAPT+EAKEKELANG
Sbjct: 181 EVGYPGGIFNPLNFAPTEEAKEKELANG 208
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/206 (93%), Positives = 201/206 (97%), Gaps = 2/206 (0%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAK-GEWLPGLAS 59
MATVTTQASAAVFRPCASKSRFLTGSSGKL REV++KP++SS SFKVEAK GEWLPGL+S
Sbjct: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLGREVSVKPMTSS-SFKVEAKKGEWLPGLSS 59
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P+YL+GSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV GMLLPEVFTKIGIIN
Sbjct: 60 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 119
Query: 120 APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV 179
APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPPNEV
Sbjct: 120 APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSLPPNEV 179
Query: 180 GYPGGIFNPLNFAPTDEAKEKELANG 205
GYPGGIFNPLNFAPT+EAKEKELANG
Sbjct: 180 GYPGGIFNPLNFAPTEEAKEKELANG 205
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/207 (92%), Positives = 195/207 (94%), Gaps = 2/207 (0%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSS-ASFKVEAK-GEWLPGLA 58
MATVTTQASAAVFRPCASKSRFL+GS KLNREVA KP+SSS ASFKVEAK GEWLPGL
Sbjct: 1 MATVTTQASAAVFRPCASKSRFLSGSPSKLNREVAFKPMSSSPASFKVEAKKGEWLPGLP 60
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
SP YLNGSLPGDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIGII
Sbjct: 61 SPAYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 120
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
N P+WYDAGK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE
Sbjct: 121 NVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 180
Query: 179 VGYPGGIFNPLNFAPTDEAKEKELANG 205
VGYPGGIFNPLNFAPT EAKEKELANG
Sbjct: 181 VGYPGGIFNPLNFAPTLEAKEKELANG 207
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/217 (87%), Positives = 200/217 (92%), Gaps = 4/217 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSS--SASFKVEAK-GEWLPGL 57
MATVTTQASAA+FRPCASKSRFLTGSSGKLNREV ++P+ SASFKVEAK GEWLPGL
Sbjct: 1 MATVTTQASAAIFRPCASKSRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGL 60
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
ASPTYLNG+LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGV GMLLPEVFTKIGI
Sbjct: 61 ASPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
INAPQWYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP +
Sbjct: 121 INAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPQH 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
E GYPG +FNPLNFAPT EAKEKELANG A LA+
Sbjct: 181 ECGYPGSVFNPLNFAPTLEAKEKELANG-RLAMLAFL 216
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/217 (86%), Positives = 198/217 (91%), Gaps = 4/217 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSS--SASFKVEAK-GEWLPGL 57
MATVTTQASAA+FRPC SKSRFLTGSSGKLNREV ++P+ SASFKVEAK GEWLPGL
Sbjct: 1 MATVTTQASAAIFRPCTSKSRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGL 60
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
ASPTYLNG+LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGV GMLLPEVFTK GI
Sbjct: 61 ASPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGI 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
INAPQWYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPP+
Sbjct: 121 INAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPH 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
E GYPG +FNPLNFAPT EAKEKELANG A LA+
Sbjct: 181 ECGYPGSVFNPLNFAPTLEAKEKELANG-RLAMLAFL 216
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/217 (86%), Positives = 197/217 (90%), Gaps = 4/217 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSS--SASFKVEAK-GEWLPGL 57
MATVTTQASAA+FRPCAS+SRFLTGSSGKLNREVA +P+ S SFKVEAK GEWLPGL
Sbjct: 1 MATVTTQASAAIFRPCASRSRFLTGSSGKLNREVAFRPMGCPPSTSFKVEAKKGEWLPGL 60
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
ASP YLNGSLPGDNGFDPL LAEDPENLKW+VQAELVN RWA LGV GMLLPEV T IG+
Sbjct: 61 ASPNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGVAGMLLPEVLTNIGL 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
IN P+WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
EVGYPGGIFNPLNFAPT+EAKE+ELANG A LA+
Sbjct: 181 EVGYPGGIFNPLNFAPTEEAKERELANG-RLAMLAFL 216
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/207 (89%), Positives = 194/207 (93%), Gaps = 2/207 (0%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV-SSSASFKVEAK-GEWLPGLA 58
MATV+TQASAAVFRPCA KSRFL G+ KLNRE+++KP+ SSS SFKVEAK GEWLPGL
Sbjct: 1 MATVSTQASAAVFRPCAYKSRFLAGAPSKLNRELSIKPMASSSPSFKVEAKKGEWLPGLP 60
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
SP+YLNGSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFTKIGII
Sbjct: 61 SPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 120
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPNE
Sbjct: 121 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNE 180
Query: 179 VGYPGGIFNPLNFAPTDEAKEKELANG 205
GYPGGIFNPLNFAPT EAKEKELANG
Sbjct: 181 CGYPGGIFNPLNFAPTIEAKEKELANG 207
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/207 (89%), Positives = 194/207 (93%), Gaps = 2/207 (0%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV-SSSASFKVEAK-GEWLPGLA 58
MATV+TQASAAVFRPCA KSRFL G+ KLNRE+++KP+ SSS SFKVEAK GEWLPGL
Sbjct: 1 MATVSTQASAAVFRPCAYKSRFLAGAPSKLNRELSIKPMASSSPSFKVEAKKGEWLPGLP 60
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
SP+YLNGSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFTKIGII
Sbjct: 61 SPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 120
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPNE
Sbjct: 121 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNE 180
Query: 179 VGYPGGIFNPLNFAPTDEAKEKELANG 205
GYPGGIFNPLNFAPT EAKEKELANG
Sbjct: 181 CGYPGGIFNPLNFAPTIEAKEKELANG 207
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/218 (85%), Positives = 197/218 (90%), Gaps = 5/218 (2%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSS---ASFKVEAK-GEWLPG 56
MATVTTQASA++FRPC SK RFLTGSSG+LNRE++ K + SS ASFKVEAK GEWLPG
Sbjct: 1 MATVTTQASASIFRPCTSKPRFLTGSSGRLNRELSFKSIGSSSKTASFKVEAKKGEWLPG 60
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
LASP YLNGSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIG
Sbjct: 61 LASPGYLNGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120
Query: 117 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
IIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180
Query: 177 NEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
NEVGYPGGIFNPLNFAPT EAKEKELANG A LA+
Sbjct: 181 NEVGYPGGIFNPLNFAPTVEAKEKELANG-RLAMLAFL 217
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/208 (86%), Positives = 196/208 (94%), Gaps = 3/208 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA--SFKVEAK-GEWLPGL 57
MATVTTQASAA+FRPCAS++RFLTGSSGKLNREV+ +P +SS+ SFKVEAK G+WLPGL
Sbjct: 1 MATVTTQASAAIFRPCASRTRFLTGSSGKLNREVSFRPSTSSSYNSFKVEAKKGQWLPGL 60
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
ASP YL+GSLPGDNGFDPLGLAEDPENLKW++QAELVN RWAMLGV GMLLPEVFT IGI
Sbjct: 61 ASPDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIGI 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
+N P+WYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPPN
Sbjct: 121 LNVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPN 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANG 205
+ GYPGGIFNPLNFAPT+EAKEKELANG
Sbjct: 181 KCGYPGGIFNPLNFAPTEEAKEKELANG 208
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/217 (86%), Positives = 196/217 (90%), Gaps = 4/217 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAK-GEWLPGL 57
MATVTTQASAA+FRPC KSRFLTGSSGKLNREVA++P+ S SASFKVEAK GEWLPGL
Sbjct: 1 MATVTTQASAAIFRPCGLKSRFLTGSSGKLNREVAIRPMGCSPSASFKVEAKKGEWLPGL 60
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
ASP YL GSLPGDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFT IGI
Sbjct: 61 ASPGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGI 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
IN P+WYDAGK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 INVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKG 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
EVGYPGGIFNPLNFAPT EAKEKE+ANG A LA+
Sbjct: 181 EVGYPGGIFNPLNFAPTLEAKEKEIANG-RLAMLAFL 216
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/217 (87%), Positives = 200/217 (92%), Gaps = 4/217 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSAS--FKVEAK-GEWLPGL 57
MATVTTQASAAVFRPCA++SRFL+GSSGKL R +++KPVS+S+S FKVEAK GEWLPGL
Sbjct: 1 MATVTTQASAAVFRPCAARSRFLSGSSGKLQRVLSVKPVSASSSSSFKVEAKKGEWLPGL 60
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
SP YLNGSLPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGV GMLLPEVFTKIGI
Sbjct: 61 PSPMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPN 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
E GYPGGIFNPLNFAPT EAKEKE+ANG A LA+
Sbjct: 181 ECGYPGGIFNPLNFAPTLEAKEKEIANG-RLAMLAFL 216
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 365 bits (937), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 182/208 (87%), Positives = 188/208 (90%), Gaps = 3/208 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNRE--VALKPVSSSASFKVEAK-GEWLPGL 57
MA VTTQAS A FRPCASKSRFLTG+ GKLN+E V L SS+ S KVEAK GEWLPGL
Sbjct: 1 MAAVTTQASIAGFRPCASKSRFLTGAPGKLNKECGVRLPSTSSTNSLKVEAKKGEWLPGL 60
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
ASP YLNGSLPGDNGFDPL LAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFT+IGI
Sbjct: 61 ASPAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGI 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
IN P+WYDAGK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKQEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANG 205
EVGYPGGIFNPLNFAPT EAKEKELANG
Sbjct: 181 EVGYPGGIFNPLNFAPTAEAKEKELANG 208
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 365 bits (936), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 178/209 (85%), Positives = 188/209 (89%), Gaps = 4/209 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAK-GEWLPG 56
MATVTT ASA++FRPC SK RFLTGSSG+LNR+++ + SSA SFKVEAK GEWLPG
Sbjct: 1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
LASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIG
Sbjct: 61 LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120
Query: 117 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
IIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180
Query: 177 NEVGYPGGIFNPLNFAPTDEAKEKELANG 205
EVGYPGGIFNPLNFAPT EAKEKELANG
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANG 209
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 362 bits (930), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 178/217 (82%), Positives = 193/217 (88%), Gaps = 4/217 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA--SFKVEAK-GEWLPGL 57
MATV TQASA VFRPCAS+SRFL+GSSGK NR +++KP +SS +FKVEAK GEWLPGL
Sbjct: 1 MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
SPTYL+GSLPGDNGFDPLGLAEDPENL+WY QAELVN RWAMLGV GM+LPEV T GI
Sbjct: 61 PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
IN P+WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
+VGYPGGIFNPLNF PT EA+EKE+ANG A LA+
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAREKEIANG-RLAMLAFL 216
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 183/217 (84%), Positives = 190/217 (87%), Gaps = 4/217 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAK-GEWLPGL 57
MATVTTQASAA+F PC KSRFL GSSGKLNR VA +PV S SASFKVEAK GEWLPGL
Sbjct: 1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
ASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGI
Sbjct: 61 ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
IN P+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAG 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
EVGYPGGIFNPLNFAPT EAKEKE+ANG A LA+
Sbjct: 181 EVGYPGGIFNPLNFAPTLEAKEKEIANG-RLAMLAFL 216
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 359 bits (921), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 180/208 (86%), Positives = 186/208 (89%), Gaps = 3/208 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAK-GEWLPGL 57
MATVTTQASAA+F PC KSRFL GSSGKLNR VA +PV S SASFKVEAK GEWLPGL
Sbjct: 1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
ASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGI
Sbjct: 61 ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
IN P+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAG 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANG 205
EVGYPGGIFNPLNFAPT EAKEKE+ANG
Sbjct: 181 EVGYPGGIFNPLNFAPTLEAKEKEIANG 208
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 358 bits (919), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 179/206 (86%), Positives = 192/206 (93%), Gaps = 1/206 (0%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAK-GEWLPGLAS 59
MAT TTQASAA+FRPCA+++RFLTGSSGKLNREV+ +P +S+ SFKVEAK GEWLPGLAS
Sbjct: 1 MATATTQASAAIFRPCATRTRFLTGSSGKLNREVSFRPSTSNNSFKVEAKKGEWLPGLAS 60
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL+GSLPGDNGFDPLGLAEDPENLKWY+QAELVN RWAMLGV GMLLPEVFT IGI+N
Sbjct: 61 PAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 120
Query: 120 APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV 179
P+WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFK YSLPPNE
Sbjct: 121 VPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKNYSLPPNEC 180
Query: 180 GYPGGIFNPLNFAPTDEAKEKELANG 205
GYPGGIFNPLNFA T+EAKEKELANG
Sbjct: 181 GYPGGIFNPLNFAATEEAKEKELANG 206
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 177/219 (80%), Positives = 190/219 (86%), Gaps = 6/219 (2%)
Query: 1 MATVTTQASAAVFRPCA-SKSRFLTGSSGKLNREVALKPVSSSAS---FKVEAK-GEWLP 55
MATVTT ASA++FRPC SK RFLT SSG+LNR++ K + SS+ FKVEAK GEWLP
Sbjct: 1 MATVTTHASASIFRPCTTSKPRFLTSSSGRLNRDLTFKSIGSSSKTSSFKVEAKKGEWLP 60
Query: 56 GLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
GLASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTK+
Sbjct: 61 GLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKL 120
Query: 116 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 175
GIIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 GIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
Query: 176 PNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
EVGYPGGIFNPLNFAPT EAKEKE+ANG A LA+
Sbjct: 181 KGEVGYPGGIFNPLNFAPTLEAKEKEIANG-RLAMLAFL 218
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 176/217 (81%), Positives = 186/217 (85%), Gaps = 5/217 (2%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA--SFKVEAK-GEWLPGL 57
MA+VT Q S AV RPC S+SRFLTGSS R V+ P +S A +F+V AK GEWLPGL
Sbjct: 1 MASVTAQTSLAVIRPC-SRSRFLTGSSPAKLRPVSRNPSASRAVPAFRVSAKKGEWLPGL 59
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
ASP YLNGSLPGDNGFDPLGLAEDPENLKW+VQAEL N RWAMLGV GMLLPEVFTKIGI
Sbjct: 60 ASPDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGMLLPEVFTKIGI 119
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
INAPQWYDAGK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK Y LPPN
Sbjct: 120 INAPQWYDAGKQEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYRLPPN 179
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
EVGYPGGIFNPLNFAP+ EAKEKE+ANG A LA+
Sbjct: 180 EVGYPGGIFNPLNFAPSLEAKEKEIANG-RLAMLAFL 215
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 169/218 (77%), Positives = 186/218 (85%), Gaps = 7/218 (3%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSS-GKLNREVALKPVSSSA---SFKVEAKGEWLPG 56
MA+VTTQA+ V P +S FLTGSS +L R V +P S+ A SFKVEAKGEWLPG
Sbjct: 1 MASVTTQAALGVSCPSVCRSAFLTGSSVSRLARRV--RPGSNPAPARSFKVEAKGEWLPG 58
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
L+SP+YLNGSLPGDNGFDPLGLAEDPE+LKWYVQAELVN RWAMLGV GML+PEV T IG
Sbjct: 59 LSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIG 118
Query: 117 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
+IN P+WYDAGK EYFASSSTLFVIEFILFHYVE+RRWQDIK PGSVNQDP+FKQYSLPP
Sbjct: 119 LINVPKWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYSLPP 178
Query: 177 NEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
NEVGYPGGIFNPLNF+P+ EAKEKELANG A LA+
Sbjct: 179 NEVGYPGGIFNPLNFSPSMEAKEKELANG-RLAMLAFL 215
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 325 bits (834), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 160/205 (78%), Positives = 172/205 (83%), Gaps = 4/205 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
MA+VT +A A RP +S S FL G S +L R P + S K EAKGEWLPGL SP
Sbjct: 1 MASVTARAPVAALRP-SSSSAFL-GHSSRLGRTATASP--TRRSLKAEAKGEWLPGLPSP 56
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
YL+GSLPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGV GML+PEV TK G+INA
Sbjct: 57 AYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLINA 116
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
PQWYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPP+E G
Sbjct: 117 PQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECG 176
Query: 181 YPGGIFNPLNFAPTDEAKEKELANG 205
YPG +FNPLNFAPT EAKEKELANG
Sbjct: 177 YPGSVFNPLNFAPTLEAKEKELANG 201
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 325 bits (834), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 166/218 (76%), Positives = 182/218 (83%), Gaps = 7/218 (3%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSS-GKLNREVALKPVSSSA---SFKVEAKGEWLPG 56
MA+VTTQA+ V +S FLTGSS +L R V +P S+ A SFKVEAKGEWLPG
Sbjct: 1 MASVTTQATLGVSCRSVCRSGFLTGSSVSRLARRV--RPGSNPAPARSFKVEAKGEWLPG 58
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
L+SPTYLNGSLPGDNGFDPLGLAEDPE+LKWYVQAELVN RWAMLGV GML+PEV T G
Sbjct: 59 LSSPTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFG 118
Query: 117 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
I+ P+WYDAGK EYFASSSTLFVIEFILFHYVE+RRWQDIK PGSVNQDP+FK YSLPP
Sbjct: 119 FIDVPKWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFKNYSLPP 178
Query: 177 NEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
NEVGYPGGIFNPLNF+P+ EAKEKELANG A LA+
Sbjct: 179 NEVGYPGGIFNPLNFSPSMEAKEKELANG-RLAMLAFL 215
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 325 bits (833), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 159/207 (76%), Positives = 171/207 (82%), Gaps = 4/207 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
MA+VT +A A RP +S S FL G S +L R P + S K EAKGEWLPGL SP
Sbjct: 1 MASVTARAPVAALRPSSS-SAFL-GHSSRLGRTATASP--TRRSLKAEAKGEWLPGLPSP 56
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
YL+GSLPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGV GML+PEV TK G+INA
Sbjct: 57 AYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLINA 116
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
PQWYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPP+E G
Sbjct: 117 PQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECG 176
Query: 181 YPGGIFNPLNFAPTDEAKEKELANGNN 207
YPG +FNPLNFAPT EAKEKELAN
Sbjct: 177 YPGSVFNPLNFAPTLEAKEKELANAQR 203
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 325 bits (833), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 161/214 (75%), Positives = 173/214 (80%), Gaps = 5/214 (2%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
MA+VT +A A RP AS G S +L R + S+ S +VEAKGEWLPGL SP
Sbjct: 1 MASVTARAPVAALRPSASLKSGFLGHSSRLGRASS----STRRSLRVEAKGEWLPGLPSP 56
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
YLNGSLPGDNGFDPLGLAEDPENL+WYVQAELVN+RWAMLGV GMLLPEV TKIGIINA
Sbjct: 57 AYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGMLLPEVLTKIGIINA 116
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
P WYDAGK+ YFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFK YSLPP+E G
Sbjct: 117 PLWYDAGKSTYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKNYSLPPHECG 176
Query: 181 YPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
YPG +FNPLNF PT EAKEKELANG A LA+
Sbjct: 177 YPGSVFNPLNFEPTLEAKEKELANG-RLAMLAFL 209
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 325 bits (832), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 163/214 (76%), Positives = 176/214 (82%), Gaps = 5/214 (2%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
MA+VT +A A RP +S S FL G S +L R P + S K EAKGEWLPGL SP
Sbjct: 1 MASVTARAPVAALRPSSS-SAFL-GHSSRLGRTATASP--TRRSLKAEAKGEWLPGLPSP 56
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
YL+GSLPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGV GML+PEV TK G+INA
Sbjct: 57 AYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLINA 116
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
PQWYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPP+E G
Sbjct: 117 PQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECG 176
Query: 181 YPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
YPG +FNPLNFAPT EAKEKELANG A LA+
Sbjct: 177 YPGSVFNPLNFAPTLEAKEKELANG-RLAMLAFL 209
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 165/218 (75%), Positives = 182/218 (83%), Gaps = 7/218 (3%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSS-GKLNREVALKPVSSSA---SFKVEAKGEWLPG 56
MA+VTTQA+ V +S FLTGSS +L R V +P S+ A SFKVEAKGEWLPG
Sbjct: 1 MASVTTQATLGVSCRSVCRSGFLTGSSVSRLARRV--RPGSNPAPARSFKVEAKGEWLPG 58
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
L+SPTYLNGSLPGDNGFDPLGLAEDP++LKWYVQAELVN RWAMLGV GML+PEV T G
Sbjct: 59 LSSPTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFG 118
Query: 117 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
I+ P+WYDAGK EYFASSSTLFVIEFILFHYVE+RRWQDIK PGSVNQDP+FK YSLPP
Sbjct: 119 FIDVPKWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFKNYSLPP 178
Query: 177 NEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
NEVGYPGGIFNPLNF+P+ EAKEKELANG A LA+
Sbjct: 179 NEVGYPGGIFNPLNFSPSMEAKEKELANG-RLAMLAFL 215
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 162/215 (75%), Positives = 176/215 (81%), Gaps = 7/215 (3%)
Query: 1 MATVTTQASAAVFRPCAS-KSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS 59
MA+VT +A A RP AS KS FL SS +L R ++ + + EAKGEWLPGL S
Sbjct: 1 MASVTARAPVAALRPSASLKSTFLGQSSTRLARAP-----TTRRNVRAEAKGEWLPGLPS 55
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PTYLNGSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEV TKIG+I+
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 120 APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV 179
APQWYDAGKA YFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFK YSLPP+E
Sbjct: 116 APQWYDAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHEC 175
Query: 180 GYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
GYPG +FNPLNF PT EAKEKELANG A LA+
Sbjct: 176 GYPGSVFNPLNFEPTLEAKEKELANG-RLAMLAFL 209
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 163/211 (77%), Positives = 179/211 (84%), Gaps = 7/211 (3%)
Query: 8 ASAAVFRPCASKSRFLTGSS-GKLNREVALKPVSSSA---SFKVEAKGEWLPGLASPTYL 63
A+ V P +S FLTGSS +L R V +P S+ A SFKVEAKGEWLPGL+SP+YL
Sbjct: 1 AALGVSCPSVCRSGFLTGSSVSRLARRV--RPGSNPAPARSFKVEAKGEWLPGLSSPSYL 58
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW 123
NGSLPGDNGFDPLGLAEDPE+LKWYVQAELVN RWAMLGV GML+PEV T IG+IN P+W
Sbjct: 59 NGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINVPKW 118
Query: 124 YDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPG 183
YDAGK EYFASSSTLFVIEFILFHYVE+RRWQDIK PGSVNQDP+FKQYSLPPNEVGYPG
Sbjct: 119 YDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYSLPPNEVGYPG 178
Query: 184 GIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
GIFNPLNF+P+ EAKEKELANG A LA+
Sbjct: 179 GIFNPLNFSPSMEAKEKELANG-RLAMLAFL 208
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 164/218 (75%), Positives = 180/218 (82%), Gaps = 7/218 (3%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSS-GKLNREVALKPVSSSA---SFKVEAKGEWLPG 56
MA+V TQA+ V P +S FLTGSS +L R V +P S+ A SFKVEAKGEWLPG
Sbjct: 1 MASVPTQAALGVSCPSVCRSGFLTGSSVSRLARRV--RPGSNPAPARSFKVEAKGEWLPG 58
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
L+SP+YLNGSLPGDNG DPLGLAEDPE+LKWYVQAELVN RWAMLGV GM +PEV T IG
Sbjct: 59 LSSPSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIG 118
Query: 117 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
+IN P+WYDAGK EYFASS TLFVIEFILFHYVE+RRWQDIK PGSVNQDPI K YSLPP
Sbjct: 119 LINVPKWYDAGKVEYFASSXTLFVIEFILFHYVELRRWQDIKYPGSVNQDPIXKSYSLPP 178
Query: 177 NEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
NEVGYPGGIFNPLNF+P+ EAKEKELANG A LA+
Sbjct: 179 NEVGYPGGIFNPLNFSPSMEAKEKELANG-RLAMLAFL 215
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 161/215 (74%), Positives = 175/215 (81%), Gaps = 7/215 (3%)
Query: 1 MATVTTQASAAVFRPCAS-KSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS 59
MA+VT +A A RP AS KS FL SS +L R ++ + + EAKGEWLPGL S
Sbjct: 1 MASVTARAPVAALRPSASLKSTFLGQSSTRLARAP-----TTRRNVRAEAKGEWLPGLPS 55
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PTYLNGSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEV TKIG+I+
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 120 APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV 179
APQWYDAGKA YFASSSTLFVIEFILFH VEIRRWQDIKNPG VNQDPIFK YSLPP+E
Sbjct: 116 APQWYDAGKATYFASSSTLFVIEFILFHSVEIRRWQDIKNPGCVNQDPIFKSYSLPPHEC 175
Query: 180 GYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
GYPG +FNPLNF PT EAKEKELANG A LA+
Sbjct: 176 GYPGSVFNPLNFEPTLEAKEKELANG-RLAMLAFL 209
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 318 bits (816), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 160/215 (74%), Positives = 174/215 (80%), Gaps = 7/215 (3%)
Query: 1 MATVTTQASAAVFRPCAS-KSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS 59
MA+VT + A R AS KS FL SS +L R ++ + + EAKGEWLPGL S
Sbjct: 1 MASVTARTPVAALRSSASLKSTFLGQSSTRLARAP-----TTRRNVRAEAKGEWLPGLPS 55
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PTYLNGSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEV TKIG+I+
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 120 APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV 179
APQWYDAGKA YFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFK YSLPP+E
Sbjct: 116 APQWYDAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHEC 175
Query: 180 GYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
GYPG +FNPLNF PT EAKEKELANG A LA+
Sbjct: 176 GYPGSVFNPLNFEPTLEAKEKELANG-RLAMLAFL 209
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/220 (73%), Positives = 173/220 (78%), Gaps = 9/220 (4%)
Query: 1 MATVTTQASAAVFRPCASKSRF------LTGSSGKLNREVALKPVSSSASFKVEAKGEWL 54
MA+VT +A A RP AS G S +L R P + S K EAKGEWL
Sbjct: 1 MASVTARAPVAALRPSASLKSSSSSAAAFLGHSSRLGRTATASP--TRRSLKAEAKGEWL 58
Query: 55 PGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
PGL SP YL+GSLPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGV GML+PEV TK
Sbjct: 59 PGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTK 118
Query: 115 IGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL 174
G+INAPQWYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSL
Sbjct: 119 AGLINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSL 178
Query: 175 PPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
PP+E GYPG +FNPLNFAPT EAKEKELANG A LA+
Sbjct: 179 PPHECGYPGSVFNPLNFAPTLEAKEKELANG-RLAMLAFL 217
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 159/215 (73%), Positives = 174/215 (80%), Gaps = 6/215 (2%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
MA+VT +A A RP AS G S +L R + S+ S +VEAKGEWLPGLASP
Sbjct: 1 MASVTARAPVAALRPSASLKSGFLGHSSRLGRASS----STRRSLRVEAKGEWLPGLASP 56
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
YL+GSL GDNGFDPLGLAEDPENL+WYVQAELVN+RWAMLGV G+L+PEV TKIGIINA
Sbjct: 57 AYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGVLVPEVLTKIGIINA 116
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQD-IKNPGSVNQDPIFKQYSLPPNEV 179
PQWYDAGK+ YFASSSTLFVIEFILFHYVEIRRWQD IKNPG VNQDPIFK YSLPP+E
Sbjct: 117 PQWYDAGKSTYFASSSTLFVIEFILFHYVEIRRWQDIIKNPGCVNQDPIFKNYSLPPHEC 176
Query: 180 GYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
GYPG +FNPLNF PT EAKEKELANG A LA+
Sbjct: 177 GYPGSVFNPLNFEPTLEAKEKELANG-RLAMLAFL 210
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 154/214 (71%), Positives = 171/214 (79%), Gaps = 5/214 (2%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
MA++T +A A RP AS + G S +L L +S S +VEAKGEWLPGL SP
Sbjct: 1 MASITARAPVAALRPSASLNSGFLGHSSRL----GLASSTSRRSLRVEAKGEWLPGLPSP 56
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
YL+G LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGV GML PE+ TKIG+INA
Sbjct: 57 AYLDGKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGLINA 116
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
P+WYDAGK+ YFASSSTLFV+EFILFHYVEIRRWQDIK PG VNQDPIFK YSLPP+E G
Sbjct: 117 PEWYDAGKSTYFASSSTLFVVEFILFHYVEIRRWQDIKEPGCVNQDPIFKSYSLPPHECG 176
Query: 181 YPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
YPG +FNPLNFAPT EAKEKE+ANG A LAY
Sbjct: 177 YPGSVFNPLNFAPTLEAKEKEIANG-RLAMLAYL 209
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 155/217 (71%), Positives = 174/217 (80%), Gaps = 8/217 (3%)
Query: 1 MATVTTQASAAVFRPCASKSRF---LTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGL 57
MA+VT +A A RP ++ + G S +L R + + S K EAKGEWLPGL
Sbjct: 1 MASVTARAPVAALRPSSASLKSSSAFLGHSSRLGRTAS----PTRRSLKAEAKGEWLPGL 56
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
SP+YL+GSL GDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GML+PEV TK G+
Sbjct: 57 PSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL 116
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
INAPQWYDAGK+EYFASSSTLFV+EFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPP+
Sbjct: 117 INAPQWYDAGKSEYFASSSTLFVVEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPH 176
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
E GYPG +FNPLNFAPT EAKEKELANG A LA+
Sbjct: 177 ECGYPGSVFNPLNFAPTLEAKEKELANG-RLAMLAFL 212
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 157/215 (73%), Positives = 170/215 (79%), Gaps = 7/215 (3%)
Query: 1 MATVTTQASAAVFRPCAS-KSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS 59
MA+VT + A R AS KS FL SS +L R ++ + + EAKGEWLPGL S
Sbjct: 1 MASVTARTPVAALRSSASLKSTFLGQSSTRLARAP-----TTRRNVRAEAKGEWLPGLPS 55
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PTYLNGSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEV TKIG+I+
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 120 APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV 179
APQWYDAGKA YFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFK YSLPP+E
Sbjct: 116 APQWYDAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYSLPPHEC 175
Query: 180 GYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
GYP PLNF PT EAKEKELANG A LA+
Sbjct: 176 GYPAASSTPLNFEPTLEAKEKELANG-RLAMLAFL 209
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 309 bits (791), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 154/217 (70%), Positives = 173/217 (79%), Gaps = 8/217 (3%)
Query: 1 MATVTTQASAAVFRPCASKSRF---LTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGL 57
MA+VT +A A RP ++ + G S +L R + + S K EAKGEWLPGL
Sbjct: 1 MASVTARAPVAALRPSSASLKSSSAFLGHSSRLGRTAS----PTRRSLKAEAKGEWLPGL 56
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
SP+YL+GSL GDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GML+PEV TK G+
Sbjct: 57 PSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL 116
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
INAPQWYDA K+EYFASSSTLFV+EFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPP+
Sbjct: 117 INAPQWYDASKSEYFASSSTLFVVEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPH 176
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
E GYPG +FNPLNFAPT EAKEKELANG A LA+
Sbjct: 177 ECGYPGSVFNPLNFAPTLEAKEKELANG-RLAMLAFL 212
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 154/217 (70%), Positives = 173/217 (79%), Gaps = 8/217 (3%)
Query: 1 MATVTTQASAAVFRPCASKSRF---LTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGL 57
MA+VT +A A RP ++ + G S +L R + + S K EAKGEWLPGL
Sbjct: 1 MASVTARAPVAALRPSSASLKSSSAFLGHSSRLGRTAS----PTRRSXKAEAKGEWLPGL 56
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
SP+YL+GSL GDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GML+PEV TK G+
Sbjct: 57 PSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL 116
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
INAPQWYDAGK+EYFASSSTLFV+EFILF YVEIRRWQDIKNPGSVNQDPIFK YSLPP+
Sbjct: 117 INAPQWYDAGKSEYFASSSTLFVVEFILFXYVEIRRWQDIKNPGSVNQDPIFKSYSLPPH 176
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
E GYPG +FNPLNFAPT EAKEKELANG A LA+
Sbjct: 177 ECGYPGSVFNPLNFAPTLEAKEKELANG-RLAMLAFL 212
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/215 (71%), Positives = 170/215 (79%), Gaps = 7/215 (3%)
Query: 1 MATVTTQASAAVFRPCAS-KSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS 59
MA+ T + A AS KS FL SS +L R ++ + + EAKGEWLPGL S
Sbjct: 1 MASDTARTPVAALLSSASLKSTFLGQSSTRLARAP-----TTRRNVRAEAKGEWLPGLPS 55
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PTYLNGSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEV TKIG+I+
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 120 APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV 179
APQWYDAGKA YFASS+TLFVIEFILFHYVEIR+WQDIKNPG VNQDPIFK Y LP +E
Sbjct: 116 APQWYDAGKATYFASSNTLFVIEFILFHYVEIRQWQDIKNPGCVNQDPIFKSYRLPSDEC 175
Query: 180 GYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
GYPG +FNPLNF PT EAKEKELANG A LA+
Sbjct: 176 GYPGSVFNPLNFEPTLEAKEKELANG-RLAMLAFL 209
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/208 (74%), Positives = 165/208 (79%), Gaps = 7/208 (3%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNR--EVALKPVSSSASFKVEAK-GEWLPGL 57
MA T QAS V P S FL+GSS KL R P ++ FKVEAK GEW PGL
Sbjct: 1 MAASTMQASIGVSCP----STFLSGSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGL 56
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
ASP YLNGSLPGDNGFDPLGLA DP NLKWYVQAEL N RWAM+GV GML+PEV TKIG+
Sbjct: 57 ASPGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGV 116
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
INAP WYDAGK EYFA +STLFVIEF++FHYVE+RRWQDIK PGSVNQDPIFK YSLPPN
Sbjct: 117 INAPLWYDAGKVEYFAPASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQDPIFKGYSLPPN 176
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANG 205
EVGYPGGIFNPLNF +E KEKELANG
Sbjct: 177 EVGYPGGIFNPLNFPANEEYKEKELANG 204
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/208 (73%), Positives = 164/208 (78%), Gaps = 7/208 (3%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNR--EVALKPVSSSASFKVEAK-GEWLPGL 57
MA T QAS V P S FL+ SS KL R P ++ FKVEAK GEW PGL
Sbjct: 1 MAASTMQASIGVSCP----STFLSRSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGL 56
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
ASP YLNGSLPGDNGFDPLGLA DP NLKWYVQAEL N RWAM+GV GML+PEV TKIG+
Sbjct: 57 ASPGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGV 116
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
INAP WYDAGK EYFA +STLFVIEF++FHYVE+RRWQDIK PGSVNQDPIFK YSLPPN
Sbjct: 117 INAPLWYDAGKVEYFAPASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQDPIFKGYSLPPN 176
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANG 205
EVGYPGGIFNPLNF +E KEKELANG
Sbjct: 177 EVGYPGGIFNPLNFPANEEYKEKELANG 204
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/216 (69%), Positives = 170/216 (78%), Gaps = 9/216 (4%)
Query: 1 MATVTTQASAAVFRPCASKS--RFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA 58
M++V+ +A A RP AS S RFL G SG++ S+ V+AKG WLPGL
Sbjct: 1 MSSVSARAPVAALRPAASASSPRFL-GDSGRVGLAK-----STRRDVAVQAKGSWLPGLQ 54
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
SP YL+GSL GDNGFDPL LAEDPE+L+W+VQAELVN RWAMLGV GML+PEV TK G++
Sbjct: 55 SPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLL 114
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
NAP+WYDAGK YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPP+E
Sbjct: 115 NAPEWYDAGKETYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHE 174
Query: 179 VGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
GYPG +FNPLNFAPT E KEKELANG A LA+
Sbjct: 175 CGYPGSVFNPLNFAPTLENKEKELANG-RLAMLAFL 209
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/165 (86%), Positives = 150/165 (90%), Gaps = 1/165 (0%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
KG+WLPGLASPTYL+GSLPGD GF PLGLAEDPENLKW+VQAELVN RWAMLGV GMLLP
Sbjct: 2 KGQWLPGLASPTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGVAGMLLP 61
Query: 110 EVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
EVFT IGI+N P+WYDAGK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ PIF
Sbjct: 62 EVFTNIGILNVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQXPIF 121
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
K YSLPPNEVGYPGGIFNPLNFAPT EAKEKE+ANG A LA+
Sbjct: 122 KNYSLPPNEVGYPGGIFNPLNFAPTAEAKEKEIANG-RLAMLAFL 165
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 145/216 (67%), Positives = 169/216 (78%), Gaps = 7/216 (3%)
Query: 1 MATVTTQASAAVFRPCASKS--RFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA 58
M++ + +A A RP AS RFL G SG R++ L + V+AKG+WLPGLA
Sbjct: 1 MSSGSARAPVAALRPSASSPSPRFL-GDSG---RQLGLAKSLARRDVAVQAKGQWLPGLA 56
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
SP YL+GSL GDNGFDPL LAEDP +L+W+VQAELVN RWAMLGV GML+PE+ TK G++
Sbjct: 57 SPAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVAGMLIPELLTKAGLL 116
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
+AP+WYDAGK YFASSSTLFV+EFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLP ++
Sbjct: 117 SAPEWYDAGKETYFASSSTLFVVEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPDHD 176
Query: 179 VGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
GYPG +FNPLNFAPT E KEKELANG A LA+
Sbjct: 177 CGYPGSVFNPLNFAPTLENKEKELANG-RLAMLAFL 211
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 148/210 (70%), Positives = 162/210 (77%), Gaps = 7/210 (3%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSG---KLNREVALKPVSSSASFKVEAK-GEWLPG 56
MA+V+ QA + C K+ FL+G+S N +VA P+SS S KVEAK GEWLPG
Sbjct: 1 MASVSMQAMSVSSAVC--KTSFLSGTSSTRFSRNVQVAAAPISSQ-SLKVEAKKGEWLPG 57
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
L SP YLNGSL GDNGFDPLGLAEDP L WYVQAEL N RWAMLGV GML+PEV TKIG
Sbjct: 58 LPSPAYLNGSLAGDNGFDPLGLAEDPAALNWYVQAELQNGRWAMLGVAGMLVPEVLTKIG 117
Query: 117 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
+INAP WYDAGK EYFA +STLFVIEFILFHYVEIRRWQDIK PGSV+QDP FK Y LPP
Sbjct: 118 LINAPLWYDAGKVEYFAPASTLFVIEFILFHYVEIRRWQDIKYPGSVSQDPFFKSYKLPP 177
Query: 177 NEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
+VGYPGGIFNPL F E KEKE+ANG
Sbjct: 178 GDVGYPGGIFNPLKFPANQEYKEKEIANGR 207
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 144/199 (72%), Positives = 159/199 (79%), Gaps = 7/199 (3%)
Query: 16 CASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDP 75
AS RFL G SG++ S+ V+AKG WLPGL SP YL+GSL GDNGFDP
Sbjct: 1 SASSPRFL-GDSGRVGLAK-----STRRDVAVQAKGSWLPGLQSPAYLDGSLAGDNGFDP 54
Query: 76 LGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASS 135
L LAEDPE+L+W+VQAELVN RWAMLGV GML+PEV TK G++NAP+WYDAGK YFASS
Sbjct: 55 LALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLLNAPEWYDAGKETYFASS 114
Query: 136 STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD 195
STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPP+E GYPG +FNPLNFAPT
Sbjct: 115 STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPTL 174
Query: 196 EAKEKELANGNNSAKLAYF 214
E KEKELANG A LA+
Sbjct: 175 ENKEKELANG-RLAMLAFL 192
>gi|226856772|gb|ACO87363.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
Length = 148
Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 135/147 (91%), Positives = 138/147 (93%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
SP YLNGSLPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGII
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTTIGII 60
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
N P+WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E
Sbjct: 61 NVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHE 120
Query: 179 VGYPGGIFNPLNFAPTDEAKEKELANG 205
GYPGGIFNPLNFAPT EAKEKELANG
Sbjct: 121 CGYPGGIFNPLNFAPTLEAKEKELANG 147
>gi|226856758|gb|ACO87356.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856760|gb|ACO87357.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856762|gb|ACO87358.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856764|gb|ACO87359.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856766|gb|ACO87360.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856768|gb|ACO87361.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856770|gb|ACO87362.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856774|gb|ACO87364.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856776|gb|ACO87365.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856778|gb|ACO87366.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856780|gb|ACO87367.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856784|gb|ACO87369.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856786|gb|ACO87370.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856788|gb|ACO87371.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856790|gb|ACO87372.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856792|gb|ACO87373.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856794|gb|ACO87374.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856798|gb|ACO87376.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856800|gb|ACO87377.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856802|gb|ACO87378.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856804|gb|ACO87379.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856806|gb|ACO87380.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856808|gb|ACO87381.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856810|gb|ACO87382.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856812|gb|ACO87383.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856814|gb|ACO87384.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856816|gb|ACO87385.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856818|gb|ACO87386.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856820|gb|ACO87387.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856822|gb|ACO87388.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856824|gb|ACO87389.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856826|gb|ACO87390.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856828|gb|ACO87391.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856830|gb|ACO87392.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856832|gb|ACO87393.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
Length = 148
Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 135/147 (91%), Positives = 138/147 (93%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
SP YLNGSLPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGII
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGII 60
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
N P+WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E
Sbjct: 61 NVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHE 120
Query: 179 VGYPGGIFNPLNFAPTDEAKEKELANG 205
GYPGGIFNPLNFAPT EAKEKELANG
Sbjct: 121 CGYPGGIFNPLNFAPTLEAKEKELANG 147
>gi|226856796|gb|ACO87375.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 134/147 (91%), Positives = 137/147 (93%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
SP YLNGSLPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGII
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGII 60
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
N P+WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPI KQYSL P+E
Sbjct: 61 NVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPILKQYSLAPHE 120
Query: 179 VGYPGGIFNPLNFAPTDEAKEKELANG 205
GYPGGIFNPLNFAPT EAKEKELANG
Sbjct: 121 CGYPGGIFNPLNFAPTLEAKEKELANG 147
>gi|226856782|gb|ACO87368.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 134/147 (91%), Positives = 137/147 (93%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
SP YLNGSLPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGII
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGII 60
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
N P+WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQ PIFKQYSL P+E
Sbjct: 61 NVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQGPIFKQYSLAPHE 120
Query: 179 VGYPGGIFNPLNFAPTDEAKEKELANG 205
GYPGGIFNPLNFAPT EAKEKELANG
Sbjct: 121 CGYPGGIFNPLNFAPTLEAKEKELANG 147
>gi|207853206|gb|ACI25388.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853210|gb|ACI25390.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853212|gb|ACI25391.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853214|gb|ACI25392.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853216|gb|ACI25393.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 126/138 (91%), Positives = 130/138 (94%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEVFT IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVFTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GK EYFASS+TLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPP+E GYPG IF
Sbjct: 61 GKVEYFASSTTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPHECGYPGSIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853250|gb|ACI25410.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 127/138 (92%), Positives = 130/138 (94%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPRWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853200|gb|ACI25385.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853202|gb|ACI25386.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853204|gb|ACI25387.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853218|gb|ACI25394.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853220|gb|ACI25395.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853222|gb|ACI25396.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853224|gb|ACI25397.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853226|gb|ACI25398.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853228|gb|ACI25399.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853230|gb|ACI25400.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853234|gb|ACI25402.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853238|gb|ACI25404.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853240|gb|ACI25405.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853248|gb|ACI25409.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853252|gb|ACI25411.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853254|gb|ACI25412.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853260|gb|ACI25415.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853264|gb|ACI25417.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853268|gb|ACI25419.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853274|gb|ACI25422.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853276|gb|ACI25423.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853282|gb|ACI25426.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 127/138 (92%), Positives = 130/138 (94%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853278|gb|ACI25424.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 127/138 (92%), Positives = 130/138 (94%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTGIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853244|gb|ACI25407.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 126/138 (91%), Positives = 130/138 (94%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEYFASSSTLFVIEF+LFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKAEYFASSSTLFVIEFVLFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853232|gb|ACI25401.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 126/138 (91%), Positives = 130/138 (94%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAE+FASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKAEHFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853270|gb|ACI25420.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 265 bits (677), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 126/138 (91%), Positives = 130/138 (94%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQA+LVN RWAMLGVVGMLLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAKLVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853208|gb|ACI25389.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/138 (91%), Positives = 129/138 (93%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKVEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853242|gb|ACI25406.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/138 (91%), Positives = 129/138 (93%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPE T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEALTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853266|gb|ACI25418.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/138 (91%), Positives = 129/138 (93%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEYFASSSTLFVIEF LFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKAEYFASSSTLFVIEFTLFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853256|gb|ACI25413.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/138 (91%), Positives = 130/138 (94%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVG+LLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGVLLPEVLTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853236|gb|ACI25403.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 125/138 (90%), Positives = 129/138 (93%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEYFASSSTLFVIE ILFHYVE+RRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKAEYFASSSTLFVIELILFHYVEVRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853272|gb|ACI25421.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/138 (91%), Positives = 129/138 (93%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVG LLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGTLLPEVLTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853258|gb|ACI25414.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/138 (91%), Positives = 129/138 (93%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQ SL P+E GYPGGIF
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQCSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853280|gb|ACI25425.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/138 (91%), Positives = 129/138 (93%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDP NL+WYVQAELVN RWAMLGVVGMLLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPGNLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853262|gb|ACI25416.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/138 (91%), Positives = 129/138 (93%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGI
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIS 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|207853246|gb|ACI25408.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/138 (91%), Positives = 129/138 (93%)
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGDNGFDPLGLAEDPENL+WYVQAELVN RWAMLGVVGMLLPEV T IGIIN P+WYDA
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
GKAEY ASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSL P+E GYPGGIF
Sbjct: 61 GKAEYSASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIF 120
Query: 187 NPLNFAPTDEAKEKELAN 204
NPLNFAPT EAKEKELAN
Sbjct: 121 NPLNFAPTLEAKEKELAN 138
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/178 (67%), Positives = 138/178 (77%), Gaps = 4/178 (2%)
Query: 38 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSR 97
P S+ V+AKG WLPGL SP YL+GSL GDNGFDPL LAEDPE+L+W+VQA++VN R
Sbjct: 21 PRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGR 80
Query: 98 WAMLGVVGMLLPEVFTKIGIINAPQWYD-AGKAEYFASSSTLFVIEFILFHYVEIRRWQD 156
WAMLGV GML+PEV TK G++NAP+W GK YFASSST + + YVEIRRWQD
Sbjct: 81 WAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQD 139
Query: 157 IKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
IKNPGSVNQDPIFK YSLPP+E GYPG +FNPLNFAP E KEKELANG A LA+
Sbjct: 140 IKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAPL-ENKEKELANG-RLAMLAFL 195
>gi|303324981|pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/128 (89%), Positives = 118/128 (92%)
Query: 78 LAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSST 137
LAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGIIN P+WY AGK EYFASSST
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSST 60
Query: 138 LFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA 197
LFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP EVGYPGGIFNPLNFAPT EA
Sbjct: 61 LFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEA 120
Query: 198 KEKELANG 205
KEKE+ANG
Sbjct: 121 KEKEIANG 128
>gi|149242543|pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/133 (84%), Positives = 118/133 (88%), Gaps = 1/133 (0%)
Query: 82 PENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVI 141
PENL+W+VQAELVN RWAMLGV GMLLPEVFT IGIIN P+WY AGK EYFASSSTLFVI
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVI 60
Query: 142 EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKE 201
EFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP EVGYPGGIFNPLNFAPT EAKEKE
Sbjct: 61 EFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKE 120
Query: 202 LANGNNSAKLAYF 214
+ANG A LA+
Sbjct: 121 IANG-RLAMLAFL 132
>gi|255642841|gb|ACU22606.1| unknown [Glycine max]
Length = 150
Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/115 (87%), Positives = 105/115 (91%), Gaps = 1/115 (0%)
Query: 100 MLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 159
MLGV GMLLPEVFTKIGIINAPQWYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 1 MLGVAGMLLPEVFTKIGIINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
PGSVNQDPIFKQYSLP +E GYPG +FNPLNFAPT EAKEKELANG A LA+
Sbjct: 61 PGSVNQDPIFKQYSLPQHECGYPGSVFNPLNFAPTLEAKEKELANG-RLAMLAFL 114
>gi|11762172|gb|AAG40364.1|AF325012_1 AT3g47470 [Arabidopsis thaliana]
Length = 148
Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/115 (87%), Positives = 104/115 (90%), Gaps = 1/115 (0%)
Query: 100 MLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 159
MLGV GMLLPEVFTKIGIIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 1 MLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
PGSVNQDPIFKQYSLP EVGYPGGIFNPLNFAPT EAKEKELANG A LA+
Sbjct: 61 PGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANG-RLAMLAFL 114
>gi|413922345|gb|AFW62277.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 131
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/107 (88%), Positives = 100/107 (93%)
Query: 99 AMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK 158
AMLGV GML+PEV TK G+INAPQWYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIK
Sbjct: 2 AMLGVAGMLIPEVLTKAGLINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIK 61
Query: 159 NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
NPGSVNQDPIFK YSLPP+E GYPG +FNPLNFAPT EAKEKELANG
Sbjct: 62 NPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPTLEAKEKELANG 108
>gi|383867523|gb|AFH55007.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
saltuaria]
Length = 138
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 97/123 (78%), Positives = 105/123 (85%)
Query: 93 LVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIR 152
LVN R MLGV GML+PEV T IGI+N P+WYDAGK EYFASSSTLFVIEFILFHYVE+R
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEYFASSSTLFVIEFILFHYVELR 60
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLA 212
RWQDIK PGSVNQDPIFK YSLPPN+VGYPGGIFNPLNF+P+ EAKEKELANG L
Sbjct: 61 RWQDIKYPGSVNQDPIFKSYSLPPNDVGYPGGIFNPLNFSPSLEAKEKELANGRLFKFLH 120
Query: 213 YFY 215
F+
Sbjct: 121 SFF 123
>gi|315140122|gb|ADT81035.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140124|gb|ADT81036.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140126|gb|ADT81037.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140128|gb|ADT81038.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140130|gb|ADT81039.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140132|gb|ADT81040.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140134|gb|ADT81041.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140136|gb|ADT81042.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
Length = 128
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 98/122 (80%), Positives = 106/122 (86%), Gaps = 1/122 (0%)
Query: 93 LVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIR 152
LVN R MLGV GML+PEV T IGI+N P+WYDAGK EYFASSSTLFVIEFILFHYVE+R
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEYFASSSTLFVIEFILFHYVELR 60
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLA 212
RWQDIK PGSVNQDPIFK YSLPPN+VGYPGGIFNPLNF+P+ EAKEKELANG A LA
Sbjct: 61 RWQDIKYPGSVNQDPIFKSYSLPPNDVGYPGGIFNPLNFSPSLEAKEKELANG-RLAMLA 119
Query: 213 YF 214
+
Sbjct: 120 FL 121
>gi|383867527|gb|AFH55009.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
gi|383867531|gb|AFH55011.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
Length = 138
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 95/113 (84%), Positives = 102/113 (90%)
Query: 93 LVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIR 152
LVN R MLGV GML+PEV T IGI+N P+WYDAGK EYFASSSTLFVIEFILFHYVE+R
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEYFASSSTLFVIEFILFHYVELR 60
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
RWQDIK PGSVNQDPIFK YSLPPN+VGYPGGIFNPLNF+P+ EAKEKELANG
Sbjct: 61 RWQDIKYPGSVNQDPIFKSYSLPPNDVGYPGGIFNPLNFSPSLEAKEKELANG 113
>gi|383867495|gb|AFH54993.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867497|gb|AFH54994.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867499|gb|AFH54995.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867501|gb|AFH54996.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867503|gb|AFH54997.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867505|gb|AFH54998.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867509|gb|AFH55000.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867511|gb|AFH55001.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867513|gb|AFH55002.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867515|gb|AFH55003.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867517|gb|AFH55004.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867519|gb|AFH55005.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
convallium]
gi|383867521|gb|AFH55006.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
convallium]
gi|383867525|gb|AFH55008.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
gi|383867529|gb|AFH55010.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
Length = 138
Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 95/113 (84%), Positives = 102/113 (90%)
Query: 93 LVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIR 152
LVN R MLGV GML+PEV T IGI+N P+WYDAGK EYFASSSTLFVIEFILFHYVE+R
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEYFASSSTLFVIEFILFHYVELR 60
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
RWQDIK PGSVNQDPIFK YSLPPN+VGYPGGIFNPLNF+P+ EAKEKELANG
Sbjct: 61 RWQDIKYPGSVNQDPIFKSYSLPPNDVGYPGGIFNPLNFSPSLEAKEKELANG 113
>gi|383867507|gb|AFH54999.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
Length = 138
Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 95/113 (84%), Positives = 102/113 (90%)
Query: 93 LVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIR 152
LVN R MLGV GML+PEV T IGI+N P+WYDAGK EYFASSSTLFVIEFILFHYVE+R
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEYFASSSTLFVIEFILFHYVELR 60
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
RWQDIK PGSVNQDPIFK YSLPPN+VGYPGGIFNPLNF+P+ EAKEKELANG
Sbjct: 61 RWQDIKYPGSVNQDPIFKSYSLPPNDVGYPGGIFNPLNFSPSLEAKEKELANG 113
>gi|194701622|gb|ACF84895.1| unknown [Zea mays]
Length = 149
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/115 (84%), Positives = 103/115 (89%), Gaps = 1/115 (0%)
Query: 100 MLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 159
MLGV GML+PEV TK G+INAPQWYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 1 MLGVAGMLIPEVLTKAGLINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
PGSVNQDPIFK YSLPP+E GYPG +FNPLNFAPT EAKEKELANG A LA+
Sbjct: 61 PGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPTLEAKEKELANG-RLAMLAFL 114
>gi|18539449|gb|AAL74395.1|AF359127_1 LHC I type IV chlorophyll binding protein [Pinus sylvestris]
gi|18539451|gb|AAL74396.1|AF359128_1 LHC I type IV chlorophyll binding protein [Pinus sylvestris]
Length = 122
Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 95/115 (82%), Positives = 103/115 (89%), Gaps = 1/115 (0%)
Query: 100 MLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 159
MLGV GML+PEV T IG+IN P+WYDAGK EYFASSSTLFVIEFILFHYVE+RRWQDIK
Sbjct: 2 MLGVAGMLIPEVLTSIGLINVPKWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKY 61
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
PGSVNQDP+FKQYSLPPNEVGYPGGIFNPLNF+P+ EAKEKELANG A LA+
Sbjct: 62 PGSVNQDPLFKQYSLPPNEVGYPGGIFNPLNFSPSMEAKEKELANG-RLAMLAFL 115
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 100/192 (52%), Positives = 121/192 (63%), Gaps = 8/192 (4%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPGDN 71
A+K+ FL+G +L PV +S S V A + W PG P +L+GSLPGD
Sbjct: 29 ATKASFLSGK--RLTVRKHTSPVVASRSVTVCAVADPDRPLWFPGSTPPPWLDGSLPGDF 86
Query: 72 GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY 131
GFDPLGL DPE L+W VQAELV+ RWAMLG G+ +PE TKIGI+N P WYDAGK EY
Sbjct: 87 GFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYDAGKLEY 146
Query: 132 FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLN 190
F ++TLF+IE I + E RRW DI PG VN DPIF L +VGYPGG+ F+PL
Sbjct: 147 FTDTTTLFIIELIFIGWAEGRRWADILKPGCVNTDPIFPNNRLTGTDVGYPGGLWFDPLG 206
Query: 191 FAPTDEAKEKEL 202
+ K KEL
Sbjct: 207 WGSGSPEKIKEL 218
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG PE +K E+ N R AML V+G ++T G I+
Sbjct: 197 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 256
Query: 125 DAGKAEYFASSS 136
D G A FA+ S
Sbjct: 257 DPGHATVFAAFS 268
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 132/208 (63%), Gaps = 9/208 (4%)
Query: 2 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA--SFKVEAKGE----WLP 55
A+ +T A AA+ P A+++ G +G+ R + + SSSA SF V A W P
Sbjct: 6 ASSSTTAVAAL--PGAARASSFLGGAGRSGRLLLRQAESSSARASFAVRAAAPDRPIWFP 63
Query: 56 GLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
G P +L+GSLPGD GFDPLGL DPE+L+W VQAELV+ RWAMLG G+ +PE TKI
Sbjct: 64 GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKI 123
Query: 116 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 175
GI+N P WY AG+ +YF ++TLF+IE IL + E RRW DI PG VN DPIF L
Sbjct: 124 GILNTPSWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLT 183
Query: 176 PNEVGYPGGI-FNPLNFAPTDEAKEKEL 202
+VGYPGG+ F+PL + K KEL
Sbjct: 184 GTDVGYPGGLWFDPLGWGTGSPEKIKEL 211
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 101/203 (49%), Positives = 127/203 (62%), Gaps = 10/203 (4%)
Query: 5 TTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE----WLPGLASP 60
+T A+ AV A K+ F GK R + VS ASF V A+ W PG +P
Sbjct: 17 STSATKAVSSGSAVKAAFF----GKTLRSAKVSAVSK-ASFSVRAQATERPLWFPGSTAP 71
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
+L+GSLPGD GFDPLGL +PE LKW+VQAE+V+ RWAMLG G+ +PE+ TKIGI+N
Sbjct: 72 EWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKIGILNT 131
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
P WY AG+ YFA +TLF++E + + E RRW DI PGSVN DP+F L +VG
Sbjct: 132 PSWYTAGEQTYFADQTTLFIVELLFMGWAEGRRWADILKPGSVNTDPVFPNNKLTGTDVG 191
Query: 181 YPGGI-FNPLNFAPTDEAKEKEL 202
YPGG F+PL + AK KEL
Sbjct: 192 YPGGFWFDPLGWGAGGAAKVKEL 214
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 122/174 (70%), Gaps = 5/174 (2%)
Query: 37 KPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
+ V SS E++ W+PG A+P++L G LPGD GFDPL L ED ++L WYVQAEL ++
Sbjct: 23 RTVRSSVIASAESRPLWMPGTAAPSHLKGMLPGDYGFDPLNLGEDSKDLDWYVQAELQHA 82
Query: 97 RWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAE-YFASSSTLFVIEFILFHYVEIRRWQ 155
RWAMLGV GM PE+ T G+ + P W+DA YFASS+TLF ++ + ++ EIRRWQ
Sbjct: 83 RWAMLGVAGMAAPELLTMFGVSDLPNWHDAPFYNGYFASSTTLFTVQMFMMNWAEIRRWQ 142
Query: 156 DIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA-PTDE---AKEKELANG 205
DIKNPGSV++DP F LP +VGYPGGIFNP+N+ TDE K KE+ANG
Sbjct: 143 DIKNPGSVSEDPAFPGNKLPAGDVGYPGGIFNPMNYGKSTDELKALKAKEIANG 196
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 128/205 (62%), Gaps = 8/205 (3%)
Query: 4 VTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLA 58
++T +S P + FL+G K+N A PV + ++ V A E W PG
Sbjct: 15 ISTPSSQKNGSPLGTTKAFLSGRKLKVNTFTA--PVGARSTTTVCAAAEPDRPLWFPGST 72
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
P +L+GSLPGD GFDPLGL+ DPE+L+W VQAELV+ RWAMLG G+ +PE TKIGI+
Sbjct: 73 PPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGIL 132
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
N P WY AG+ EYF ++TLF++E I + E RRW DI PGSVN DPIF L +
Sbjct: 133 NTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTD 192
Query: 179 VGYPGGI-FNPLNFAPTDEAKEKEL 202
VGYPGG+ F+PL + K KEL
Sbjct: 193 VGYPGGLWFDPLGWGSGSPQKLKEL 217
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG P+ LK E+ N R AML V+G ++T G I+
Sbjct: 196 PGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 255
Query: 125 DAGKAEYFAS 134
D G A FA+
Sbjct: 256 DPGHATVFAA 265
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/190 (50%), Positives = 120/190 (63%), Gaps = 4/190 (2%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGF 73
A+K+ FL G + L + A P ++ + + E W PG P +L+GSLPGD GF
Sbjct: 37 AAKASFLVGRAVSLRQTKAAMPRRAAVTVSQAVQTERPLWFPGNTPPPWLDGSLPGDFGF 96
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGL DPE LKW VQAELV+ RWAMLG G+ +PE+ TK+GI+N P WY AG+ EYF
Sbjct: 97 DPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPELCTKLGILNTPSWYTAGELEYFT 156
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA 192
+TLFV+E I + E RRW DI PGSVN DPIF L +VGYPGG+ F+PL +
Sbjct: 157 DKTTLFVVEMIFLGWAEGRRWADILEPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 216
Query: 193 PTDEAKEKEL 202
K KEL
Sbjct: 217 SGSPEKIKEL 226
Score = 36.2 bits (82), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN--APQWY 124
PG FDPLG PE +K E+ N R AML V+G +T G I+
Sbjct: 205 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLA 264
Query: 125 DAGKAEYFASSST 137
D G A FA+ S+
Sbjct: 265 DPGHATIFAAFSS 277
>gi|125660620|gb|ABN49455.1| photosystem I chlorophyll a/b binding protein [Pisum sativum]
Length = 144
Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 95/109 (87%), Positives = 98/109 (89%), Gaps = 1/109 (0%)
Query: 106 MLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
MLLPEVFT IGIIN P+WYDAGK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ
Sbjct: 1 MLLPEVFTSIGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 60
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
DPIFKQYSLP EVGYPGGIFNPLNFAPT EAKEKE+ANG A LA+
Sbjct: 61 DPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANG-RLAMLAFL 108
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 123/190 (64%), Gaps = 4/190 (2%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGF 73
A+K+ FL G ++++ +A S A V A + W PG P +L+GSLPGD GF
Sbjct: 29 ATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGF 88
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGL DPE+LKW QAELV+SRWAMLG G+ +PE TKIG++N P WY AG+ EYF
Sbjct: 89 DPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT 148
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA 192
++TLFVIE +L + E RRW DI PG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 149 DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 208
Query: 193 PTDEAKEKEL 202
AK KEL
Sbjct: 209 SGSPAKIKEL 218
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 123/187 (65%), Gaps = 6/187 (3%)
Query: 22 FLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPGDNGFDPL 76
FL G +LN+++++ VS SA+ + W PG P +L+GSLPGD GFDPL
Sbjct: 18 FLAGKKLRLNKKLSVPAVSKSAASVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFDPL 77
Query: 77 GLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSS 136
GL+ DPE+LKW VQAE+V+ RWAMLG G+ +PE TKIGI+N P WY AG+ EYF +
Sbjct: 78 GLSSDPESLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKT 137
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTD 195
TLFV+E IL + E RRW DI PGSVN DPIF L +VGYPGG+ F+PL +
Sbjct: 138 TLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 197
Query: 196 EAKEKEL 202
AK KEL
Sbjct: 198 PAKIKEL 204
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 123/192 (64%), Gaps = 8/192 (4%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPGDN 71
++K+ FL+G K+N A PV + +S V A E W PG P +L+GSLPGD
Sbjct: 29 STKASFLSGRKLKVNNFTA--PVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPGDF 86
Query: 72 GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY 131
GFDPLGLA DPE+L+W VQAELV+ RWAMLG G+ +PE TKIGI+N P WY AG+ EY
Sbjct: 87 GFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY 146
Query: 132 FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLN 190
F ++TLF++E + E RRW DI PG VN DPIF L +VGYPGG+ F+PL
Sbjct: 147 FTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206
Query: 191 FAPTDEAKEKEL 202
+ K KEL
Sbjct: 207 WGSGSPEKIKEL 218
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG PE +K E+ N R AML V+G ++T G I+
Sbjct: 197 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 256
Query: 125 DAGKAEYFAS 134
D G A FA+
Sbjct: 257 DPGHATIFAA 266
>gi|193872600|gb|ACF23028.1| ST49-6 [Eutrema halophilum]
Length = 215
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/192 (52%), Positives = 122/192 (63%), Gaps = 6/192 (3%)
Query: 22 FLTGSSGKLNREVALKPVSSSASF--KVEAKGE---WLPGLASPTYLNGSLPGDNGFDPL 76
FL G +L + ++ VS SA+ V A E W PG P +L+GSLPGD GFDPL
Sbjct: 24 FLGGKKLRLKNKASVPAVSRSAALVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFDPL 83
Query: 77 GLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSS 136
GL+ DP++LKW QAELV+ RWAMLG G+ +PE TKIGI+N P WY AG+ EYF +
Sbjct: 84 GLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKT 143
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTD 195
TLFV+E IL + E RRW DI PGSVN DPIF L +VGYPGG+ F+PL +
Sbjct: 144 TLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLVWGSGS 203
Query: 196 EAKEKELANGNN 207
AK KEL N
Sbjct: 204 PAKIKELRTKRN 215
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 123/192 (64%), Gaps = 8/192 (4%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPGDN 71
++K+ FL+G K+N A PV + +S V A E W PG P +L+GSLPGD
Sbjct: 40 STKASFLSGRKLKVNNFTA--PVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPGDF 97
Query: 72 GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY 131
GFDPLGLA DPE+L+W VQAELV+ RWAMLG G+ +PE TKIGI+N P WY AG+ EY
Sbjct: 98 GFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY 157
Query: 132 FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLN 190
F ++TLF++E + E RRW DI PG VN DPIF L +VGYPGG+ F+PL
Sbjct: 158 FTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 217
Query: 191 FAPTDEAKEKEL 202
+ K KEL
Sbjct: 218 WGSGSPEKIKEL 229
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG PE +K E+ N R AML V+G ++T G I+
Sbjct: 208 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 267
Query: 125 DAGKAEYFAS 134
D G A FA+
Sbjct: 268 DPGHATIFAA 277
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/187 (52%), Positives = 121/187 (64%), Gaps = 6/187 (3%)
Query: 22 FLTGSSGKLNREVALKPVSSSASF--KVEAKGE---WLPGLASPTYLNGSLPGDNGFDPL 76
FL G +L + ++ VS SA+ V A E W PG P +L+GSLPGD GFDPL
Sbjct: 18 FLGGKKLRLKNKASVPAVSRSAALVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFDPL 77
Query: 77 GLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSS 136
GL+ DP++LKW QAELV+ RWAMLG G+ +PE TKIGI+N P WY AG+ EYF +
Sbjct: 78 GLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKT 137
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTD 195
TLFV+E IL + E RRW DI PGSVN DPIF L +VGYPGG+ F+PL +
Sbjct: 138 TLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 197
Query: 196 EAKEKEL 202
AK KEL
Sbjct: 198 PAKIKEL 204
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/187 (51%), Positives = 123/187 (65%), Gaps = 6/187 (3%)
Query: 22 FLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPGDNGFDPL 76
FL G +LN+++++ VS SA+ + W PG P +L+GSLPGD GFDPL
Sbjct: 18 FLCGKKLRLNKKLSVAAVSKSAASVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFDPL 77
Query: 77 GLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSS 136
GL+ DP++LKW VQAE+V+ RWAMLG G+ +PE TKIGI+N P WY AG+ EYF +
Sbjct: 78 GLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKT 137
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTD 195
TLFV+E IL + E RRW DI PGSVN DPIF L +VGYPGG+ F+PL +
Sbjct: 138 TLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 197
Query: 196 EAKEKEL 202
AK KEL
Sbjct: 198 PAKIKEL 204
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/194 (51%), Positives = 122/194 (62%), Gaps = 8/194 (4%)
Query: 15 PCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPG 69
P + FL G K+N +A PV ++ V A E W PG P +L+GSLPG
Sbjct: 25 PMGTSKAFL-GRKLKVNSNIA-APVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPG 82
Query: 70 DNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKA 129
D GFDPLGL+ DPE+LKW VQAELV+ RWAMLG G+ +PE TKIGI+N P WY AG+
Sbjct: 83 DFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQ 142
Query: 130 EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNP 188
EYF ++TLF++E I + E RRW DI NPG VN DPIF L +VGYPGG+ F+P
Sbjct: 143 EYFTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 202
Query: 189 LNFAPTDEAKEKEL 202
L + K KEL
Sbjct: 203 LGWGSGSPQKLKEL 216
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG P+ LK E+ N R AML V+G ++T G I+
Sbjct: 195 PGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 254
Query: 125 DAGKAEYFAS 134
D G A FA+
Sbjct: 255 DPGHATIFAA 264
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/189 (49%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 18 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFD 74
+K+ FL G ++++ S+ + V A + W PG P +L+GSLPGD GFD
Sbjct: 30 TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFD 89
Query: 75 PLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFAS 134
PLGLA DPE+L+W QAELV+ RWAMLG G+ +PE+ TKIGI+N P WY AG+ EYF
Sbjct: 90 PLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTD 149
Query: 135 SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAP 193
++TLF++E +L + E RRW DI PG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 150 TTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 209
Query: 194 TDEAKEKEL 202
AK KEL
Sbjct: 210 GSPAKIKEL 218
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 122/192 (63%), Gaps = 8/192 (4%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPGDN 71
++K+ FL+G K+N A PV + +S V A E W PG P +L+GSLPGD
Sbjct: 29 STKASFLSGRKLKVNSFTA--PVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPGDF 86
Query: 72 GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY 131
GFDPLGL DPE+L+W VQAELV+ RWAMLG G+ +PE TKIGI+N P WY AG+ EY
Sbjct: 87 GFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY 146
Query: 132 FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLN 190
F ++TLFV+E + E RRW DI PG VN DPIF L +VGYPGG+ F+PL
Sbjct: 147 FTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206
Query: 191 FAPTDEAKEKEL 202
+ K KEL
Sbjct: 207 WGSGSPEKIKEL 218
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG PE +K E+ N R AML V+G ++T G I+
Sbjct: 197 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 256
Query: 125 DAGKAEYFAS 134
D G A FA+
Sbjct: 257 DPGHATIFAA 266
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 122/192 (63%), Gaps = 8/192 (4%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPGDN 71
++K+ FL+G K+N A PV + +S V A E W PG P +L+GSLPGD
Sbjct: 40 STKASFLSGRKLKVNSFTA--PVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPGDF 97
Query: 72 GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY 131
GFDPLGL DPE+L+W VQAELV+ RWAMLG G+ +PE TKIGI+N P WY AG+ EY
Sbjct: 98 GFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY 157
Query: 132 FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLN 190
F ++TLFV+E + E RRW DI PG VN DPIF L +VGYPGG+ F+PL
Sbjct: 158 FTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 217
Query: 191 FAPTDEAKEKEL 202
+ K KEL
Sbjct: 218 WGSGSPEKIKEL 229
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG PE +K E+ N R AML V+G ++T G I+
Sbjct: 208 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 267
Query: 125 DAGKAEYFAS 134
D G A FA+
Sbjct: 268 DPGHATIFAA 277
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/193 (49%), Positives = 118/193 (61%), Gaps = 9/193 (4%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE------WLPGLASPTYLNGSLPGD 70
A+K+ FL G L + A P + + SF V A W PG P +L+GSLPGD
Sbjct: 29 ATKASFLGGKRLSLKKFTA--PAAGTRSFTVSAAAADPNRPLWFPGSTPPPWLDGSLPGD 86
Query: 71 NGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAE 130
GFDPLGL DPE LKW VQ+E+V+ RWAMLG G+ +PE TKIGI+N P WY AG+ E
Sbjct: 87 FGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELE 146
Query: 131 YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPL 189
YF +TLF++E I + E RRW DI PG VN DPIF L +VGYPGG+ F+PL
Sbjct: 147 YFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 206
Query: 190 NFAPTDEAKEKEL 202
+ K KEL
Sbjct: 207 GWGSGSPDKIKEL 219
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/189 (51%), Positives = 120/189 (63%), Gaps = 7/189 (3%)
Query: 20 SRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPGDNGFD 74
S+ G K+N +A PV ++ V A E W PG P +L+GSLPGD GFD
Sbjct: 29 SKAFPGRKLKVNSNIA-APVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFD 87
Query: 75 PLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFAS 134
PLGL+ DPE+LKW VQAELV+ RWAMLG G+ +PE TKIGI+N P WY AG+ EYF
Sbjct: 88 PLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTD 147
Query: 135 SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAP 193
++TLF++E I + E RRW DI NPG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 148 TTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 207
Query: 194 TDEAKEKEL 202
K KEL
Sbjct: 208 GSPQKLKEL 216
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG P+ LK E+ N R AML V+G ++T G I+
Sbjct: 195 PGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 254
Query: 125 DAGKAEYFAS 134
D G A FA+
Sbjct: 255 DPGHATIFAA 264
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 118/190 (62%), Gaps = 4/190 (2%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGF 73
A+K+ FL G + L + A P ++ + E W PG P +L+GSLP D GF
Sbjct: 37 AAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGF 96
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGL DPE LKW VQ+ELV+ RWAMLG G+ +PE+ TK+GI+N P WY AG+ EYF
Sbjct: 97 DPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFT 156
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA 192
+TLFV+E I + E RRW DI PGSVN DPIF L +VGYPGG+ F+PL +
Sbjct: 157 DKTTLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 216
Query: 193 PTDEAKEKEL 202
K KEL
Sbjct: 217 SGSPEKIKEL 226
Score = 36.2 bits (82), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN--APQWY 124
PG FDPLG PE +K E+ N R AML V+G +T G I+
Sbjct: 205 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLA 264
Query: 125 DAGKAEYFASSST 137
D G A FA+ S+
Sbjct: 265 DPGHATVFAAFSS 277
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 118/190 (62%), Gaps = 4/190 (2%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGF 73
A+K+ FL G + L + A P ++ + E W PG P +L+GSLP D GF
Sbjct: 37 AAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGF 96
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGL DPE LKW VQ+ELV+ RWAMLG G+ +PE+ TK+GI+N P WY AG+ EYF
Sbjct: 97 DPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFT 156
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA 192
+TLFV+E I + E RRW DI PGSVN DPIF L +VGYPGG+ F+PL +
Sbjct: 157 DKTTLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 216
Query: 193 PTDEAKEKEL 202
K KEL
Sbjct: 217 SGSPEKIKEL 226
Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN--APQWY 124
PG FDPLG PE +K E+ N R AML V+G +T G I+
Sbjct: 205 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLA 264
Query: 125 DAGKAEYFASSST 137
D G A FA+ S+
Sbjct: 265 DPGHATVFAAFSS 277
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/191 (50%), Positives = 120/191 (62%), Gaps = 6/191 (3%)
Query: 18 SKSRFLTGSSGKLNREVAL----KPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGF 73
+++ L G ++ R A PV + S + W PG P +L+GSLPGD GF
Sbjct: 29 ARTSLLAGRVRRVTRIAASPQAEAPVPAQPSLPNNDRPLWFPGSQPPEWLDGSLPGDFGF 88
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGL DPE LKW+VQAELV+ RWAMLG G+ +PE TK GI+N P W AG +YF
Sbjct: 89 DPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFIPEALTKAGILNTPSWTVAGDQQYFT 148
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA 192
++TLFVIE ILF + E RRW DI NPG VN DP+F L +VGYPGG+ F+PL +
Sbjct: 149 DATTLFVIEIILFAWAEGRRWADIINPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWG 208
Query: 193 PT-DEAKEKEL 202
T D AK K+L
Sbjct: 209 QTGDAAKLKDL 219
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 130/224 (58%), Gaps = 28/224 (12%)
Query: 7 QASAAVFRPC-----------------ASKSRFLTGSSGKLNREVALKPVSSSASFKVEA 49
ASA +PC ++K+ F +G + ++ + A + S
Sbjct: 1 MASAVCAKPCVGSIAATSSSKFETNVASTKASFFSGRALRMTKVAAYTNGDMTISAVAAP 60
Query: 50 KGE---WLPGLASPTYLNGSLPGDNGFDPLGL------AEDPENLKWYVQAELVNSRWAM 100
+ E W PG +P +L+GSLPGD GFDPLGL DPE LKW+VQAELV+ RWAM
Sbjct: 61 QNERPLWFPGSQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWAM 120
Query: 101 LGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
LG G+ +PE TK+GI+N P W AG A+YF +TLFVIE ILF + E RRW DI NP
Sbjct: 121 LGAAGIFIPEALTKMGILNTPSWTVAGDADYFTDKTTLFVIELILFAWAEGRRWADIVNP 180
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPT-DEAKEKEL 202
G VN DP+F L +VGYPGG+ F+PL + T D AK K+L
Sbjct: 181 GCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTSDAAKLKDL 224
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 120/193 (62%), Gaps = 6/193 (3%)
Query: 15 PCASKSRFLTGSSGKLNREVA----LKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGD 70
P + FL G K+N A ++ S+ + + W PG P +L+GSLPGD
Sbjct: 26 PSGTSKAFL-GRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLPGD 84
Query: 71 NGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAE 130
GFDPLGL DPE+L+W VQAELV+SRWAMLG G+ +PE TK+GI+N P WY AG+ E
Sbjct: 85 FGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQE 144
Query: 131 YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPL 189
YF ++TLF++E + + E RRW DI NPG VN DPIF L +VGYPGG+ F+PL
Sbjct: 145 YFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 204
Query: 190 NFAPTDEAKEKEL 202
+ K KEL
Sbjct: 205 GWGSASPQKLKEL 217
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 120/193 (62%), Gaps = 6/193 (3%)
Query: 15 PCASKSRFLTGSSGKLNREVA----LKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGD 70
P + FL G K+N A ++ S+ + + W PG P +L+GSLPGD
Sbjct: 26 PSGTSKAFL-GRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLPGD 84
Query: 71 NGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAE 130
GFDPLGL DPE+L+W VQAELV+SRWAMLG G+ +PE TK+GI+N P WY AG+ E
Sbjct: 85 FGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQE 144
Query: 131 YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPL 189
YF ++TLF++E + + E RRW DI NPG VN DPIF L +VGYPGG+ F+PL
Sbjct: 145 YFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 204
Query: 190 NFAPTDEAKEKEL 202
+ K KEL
Sbjct: 205 GWGSASPQKLKEL 217
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG P+ LK E+ N R AML V+G ++T G I+
Sbjct: 196 PGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 255
Query: 125 DAGKAEYFAS 134
D G A FA+
Sbjct: 256 DPGHATIFAA 265
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 112/174 (64%), Gaps = 5/174 (2%)
Query: 34 VALKPVSSSASFKVEAKGE----WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
A K +S SF V A W PG P +L+GSLPGD GFDP GL DPE+L+W V
Sbjct: 30 AAGKAAASRTSFAVRAAAPERPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNV 89
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYV 149
QAELV+ RWAMLG G+ +PE+ TKIGI+N P WY AG+ EYF ++TLF++E IL +
Sbjct: 90 QAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELILIGWA 149
Query: 150 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEAKEKEL 202
E RRW DI PG VN DPIF L +VGYPGG+ F+PL + K KEL
Sbjct: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGTGSPEKLKEL 203
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/151 (58%), Positives = 106/151 (70%), Gaps = 1/151 (0%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG P +L+GSLPGD GFDPLGL+ DP++LKW VQAELV+ RWAMLG G+ +PE
Sbjct: 55 WFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLGAAGIFIPEFL 114
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
TKIGI+N P WY AG+ EYF +TLFV+E IL + E RRW DI PGSVN DP+F
Sbjct: 115 TKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNN 174
Query: 173 SLPPNEVGYPGGI-FNPLNFAPTDEAKEKEL 202
L +VGYPGG+ F+PL + AK KEL
Sbjct: 175 KLTGTDVGYPGGLWFDPLGWGSGSPAKLKEL 205
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 93/190 (48%), Positives = 119/190 (62%), Gaps = 5/190 (2%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGF 73
++K+ FL+G +L + A + S + V A + W PG P +L+GSLPGD GF
Sbjct: 32 STKASFLSGKKLRLKKYTA-PTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGF 90
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGL DPE L+W VQAELV+ RWAMLG G+ +PE TKIGI+N P WY AG+ EYF
Sbjct: 91 DPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFT 150
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA 192
++TLF++E + E RRW DI PG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 151 DTTTLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 210
Query: 193 PTDEAKEKEL 202
K KEL
Sbjct: 211 SGSPEKIKEL 220
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG PE +K E+ N R AML V+G ++T G I+
Sbjct: 199 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 258
Query: 125 DAGKAEYFAS 134
D G A F++
Sbjct: 259 DPGHATVFSA 268
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 119/188 (63%), Gaps = 3/188 (1%)
Query: 16 CASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDP 75
+++ FL KL RE A +P S + S + W PG P +L+GSLPGD GFDP
Sbjct: 25 AGARTSFLGAGRTKL-REAAARP-SFAVSAAAPDRPIWFPGSVPPPWLDGSLPGDFGFDP 82
Query: 76 LGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASS 135
GL DPE+L+W VQAELV+ RWAMLG G+ +PE TKIGI++ P WY AG+ +YF +
Sbjct: 83 FGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILSTPSWYTAGEQQYFTDT 142
Query: 136 STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPT 194
+TLF+IE IL + E RRW DI PG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 143 TTLFIIELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 202
Query: 195 DEAKEKEL 202
K KEL
Sbjct: 203 SPEKLKEL 210
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 93/190 (48%), Positives = 119/190 (62%), Gaps = 5/190 (2%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGF 73
++K+ FL+G +L + A + S + V A + W PG P +L+GSLPGD GF
Sbjct: 29 STKASFLSGKKLRLKKYTA-PTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGF 87
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGL DPE L+W VQAELV+ RWAMLG G+ +PE TKIGI+N P WY AG+ EYF
Sbjct: 88 DPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFT 147
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA 192
++TLF++E + E RRW DI PG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 148 DTTTLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 207
Query: 193 PTDEAKEKEL 202
K KEL
Sbjct: 208 SGSPEKIKEL 217
Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG PE +K E+ N R AML V+G ++T G I+
Sbjct: 196 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 255
Query: 125 DAGKAEYFAS 134
D G A F++
Sbjct: 256 DPGHATVFSA 265
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/160 (56%), Positives = 110/160 (68%), Gaps = 7/160 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG +P +L+GSLPGD GFDPLGL DPE LKW+VQAELV+ RWAMLG G+ +PE
Sbjct: 5 WFPGSKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFIPEAL 64
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
TK GI+N P W AG +YFA +TLFVIE ILF + E RRW DI NPG VN DP+F
Sbjct: 65 TKAGILNTPSWNVAGDQQYFADPTTLFVIELILFAWAEGRRWADIVNPGCVNVDPVFPNN 124
Query: 173 SLPPNEVGYPGGI-FNPLNFAPTDEAKE------KELANG 205
L +VGYPGG+ F+PL + T +AK+ KE+ NG
Sbjct: 125 KLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKNG 164
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 106/151 (70%), Gaps = 1/151 (0%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG P +L+GSLPGD GFDPLGL+ DP++LKW VQAE+V+ RWAMLG G+ +PE
Sbjct: 55 WFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFL 114
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
TKIGI+N P WY AG+ EYF +TLFV+E IL + E RRW DI PGSVN DP+F
Sbjct: 115 TKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNN 174
Query: 173 SLPPNEVGYPGGI-FNPLNFAPTDEAKEKEL 202
L +VGYPGG+ F+PL + AK KEL
Sbjct: 175 KLTGTDVGYPGGLWFDPLGWGSGSPAKLKEL 205
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/190 (50%), Positives = 118/190 (62%), Gaps = 7/190 (3%)
Query: 20 SRFLTGSSGKL-NREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPGDNGF 73
S FLTG +L N A V + + V A + W PG P +L+GSLPGD GF
Sbjct: 30 SNFLTGKKLRLRNLNAAATAVVAPRTVPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGF 89
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGLA DPE+L+W QAELV+ RWAMLG G+ +PE TKIGI+N P WY AG+ EYF
Sbjct: 90 DPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFT 149
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA 192
++TLF++E I + E RRW DI PG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 150 DTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 209
Query: 193 PTDEAKEKEL 202
K KEL
Sbjct: 210 SGSPEKIKEL 219
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG PE +K E+ N R AML V+G ++T G I+
Sbjct: 198 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 257
Query: 125 DAGKAEYFAS 134
D G A FA+
Sbjct: 258 DPGHATVFAA 267
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/191 (47%), Positives = 120/191 (62%), Gaps = 5/191 (2%)
Query: 17 ASKSRFLTGSSGKLNREVALK----PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNG 72
++++ FL G + + + VS++ + + WLPG +P +L+GSLPGD G
Sbjct: 28 SARTSFLAGRALRTTQVCGAAKGDMTVSATLTGNKTDRPLWLPGSEAPKWLDGSLPGDYG 87
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYF 132
FDPL LA +P L W VQAELV+ RWAMLG G+ +PE+ TKIGI+N P WY AG A YF
Sbjct: 88 FDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYKAGDATYF 147
Query: 133 ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF 191
A TLF++E +L + E RRW DI PGSVN DPIF L +VGYPGG+ F+PL +
Sbjct: 148 ADQGTLFIVELLLMAWAESRRWADIARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 207
Query: 192 APTDEAKEKEL 202
E K KE+
Sbjct: 208 GSGSEDKLKEI 218
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 106/151 (70%), Gaps = 1/151 (0%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG P +L+GSLPGD GFDPLGL+ DP++LKW VQAE+V+ RWAMLG G+ +PE
Sbjct: 55 WFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFL 114
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
TKIGI+N P WY AG+ EYF +TLFV+E IL + E RRW DI PGSVN DP+F
Sbjct: 115 TKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNN 174
Query: 173 SLPPNEVGYPGGI-FNPLNFAPTDEAKEKEL 202
L +VGYPGG+ F+PL + AK KEL
Sbjct: 175 KLTGTDVGYPGGLWFDPLGWGSGSPAKLKEL 205
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/183 (50%), Positives = 115/183 (62%), Gaps = 5/183 (2%)
Query: 25 GSSGKLNREVALKPVSSSASFKVEAKGE----WLPGLASPTYLNGSLPGDNGFDPLGLAE 80
G +G + ++ +SF V W PG P +L+GSLPGD GFDP GL
Sbjct: 19 GLAGARTSFLGTGKAATRSSFTVRTAAPERPIWFPGSTPPPWLDGSLPGDFGFDPWGLGS 78
Query: 81 DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFV 140
DPE+L+W VQAELV+ RWAMLG G+ +PE+ TKIGI+N P WY AG+ EYF ++TLFV
Sbjct: 79 DPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFV 138
Query: 141 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEAKE 199
+E IL + E RRW DI PGSVN DPIF L +VGYPGG+ F+PL + K
Sbjct: 139 VELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGNGSPEKL 198
Query: 200 KEL 202
KEL
Sbjct: 199 KEL 201
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/190 (48%), Positives = 117/190 (61%), Gaps = 5/190 (2%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGF 73
++K+ FL G +L R + S + V A + W PG P +L+GSLPGD GF
Sbjct: 29 STKASFLRGKKLRL-RTYTSPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGF 87
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGL DPE L+W VQAELV+ RWAMLG G+ +PE TKIGI+N P WY AG+ EYF
Sbjct: 88 DPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAGEVEYFT 147
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA 192
++TLF++E + E RRW DI PG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 148 DTTTLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 207
Query: 193 PTDEAKEKEL 202
K KEL
Sbjct: 208 SGSPEKIKEL 217
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG PE +K E+ N R AML V+G ++T G I+
Sbjct: 196 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 255
Query: 125 DAGKAEYFAS 134
D G A FA+
Sbjct: 256 DPGHATVFAA 265
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 117/172 (68%), Gaps = 3/172 (1%)
Query: 37 KPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
K S S + + W PG+ +P +L G LPGD GFDPL L ++P++L+WYVQAEL +
Sbjct: 20 KRSQRSVSVRASTQPMWFPGMDAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQAELQHG 79
Query: 97 RWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAE-YFASSSTLFVIEFILFHYVEIRRWQ 155
RWAMLGV G PE+ TK+GI + P W+DA + YF ++TLF ++ ++ ++ E+RRWQ
Sbjct: 80 RWAMLGVAGAAAPEILTKMGISDLPNWHDAPNYQGYFTDATTLFWVQMLMMNWAEVRRWQ 139
Query: 156 DIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD--EAKEKELANG 205
D++ PGSVN+DP F LP VGYPGGIF+PL +A D + K KE+ANG
Sbjct: 140 DMRKPGSVNEDPAFSGNKLPSGIVGYPGGIFDPLGYAKGDLNKLKAKEIANG 191
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/165 (53%), Positives = 110/165 (66%), Gaps = 1/165 (0%)
Query: 39 VSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRW 98
VS++ + + WLPG +P +L+GSLPGD GFDPL LA +P L W VQAELV+ RW
Sbjct: 3 VSATLTGNKTDRPLWLPGSEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRW 62
Query: 99 AMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK 158
AMLG G+ +PE+ TKIGI+N P WY AG A YFA TLF++E +L + E RRW DI
Sbjct: 63 AMLGAAGIFIPELLTKIGILNTPSWYKAGDATYFADQGTLFIVELLLMAWAESRRWADIA 122
Query: 159 NPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEAKEKEL 202
PGSVN DPIF L +VGYPGG+ F+PL + E K KE+
Sbjct: 123 RPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEI 167
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/190 (48%), Positives = 117/190 (61%), Gaps = 5/190 (2%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGF 73
++K+ FL G +L R + S + V A + W PG P +L+GSLPGD GF
Sbjct: 29 STKASFLRGEKLRL-RTYTSPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGF 87
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGL DPE L+W VQAELV+ RWAMLG G+ +PE TKIGI+N P WY AG+ EYF
Sbjct: 88 DPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAGEVEYFT 147
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA 192
++TLF++E + E RRW DI PG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 148 DTTTLFIVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 207
Query: 193 PTDEAKEKEL 202
K KEL
Sbjct: 208 SGSPEKIKEL 217
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG PE +K E+ N R AML V+G ++T G I+
Sbjct: 196 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 255
Query: 125 DAGKAEYFAS 134
D G A FA+
Sbjct: 256 DPGHATVFAA 265
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 114/194 (58%), Gaps = 7/194 (3%)
Query: 16 CASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE------WLPGLASPTYLNGSLPG 69
C ++ L + E P + + SF V A W PG P +L+GSLPG
Sbjct: 27 CCGSNQGLFSWGEETEPEEFTAPAAGTRSFTVSAAAADPNRPLWFPGSTPPPWLDGSLPG 86
Query: 70 DNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKA 129
D GFDPLGL DPE LKW VQ+E+V+ RWAMLG G+ +PE TKIGI+N P WY AG+
Sbjct: 87 DFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEL 146
Query: 130 EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNP 188
EYF +TLF++E I + E RRW DI PG VN DPIF L +VGYPGG+ F+P
Sbjct: 147 EYFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 206
Query: 189 LNFAPTDEAKEKEL 202
L + K KEL
Sbjct: 207 LGWGSGSPDKIKEL 220
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 96/191 (50%), Positives = 120/191 (62%), Gaps = 12/191 (6%)
Query: 18 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPGDNG 72
+ S FL G + L + A +P SF V A + W PG P +L+GSLPGD G
Sbjct: 24 ASSSFLGGKT-LLRQAEAARP-----SFAVRAAADPNRPIWFPGSTPPPWLDGSLPGDFG 77
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYF 132
FDP GL DPE+L+W VQAELV+ RWAMLG G+ +PE TKIG++N P WY AG+ +YF
Sbjct: 78 FDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYF 137
Query: 133 ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF 191
++TLF+IE IL + E RRW DI PGSVN DPIF L +VGYPGG+ F+PL +
Sbjct: 138 TDTTTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGW 197
Query: 192 APTDEAKEKEL 202
K KEL
Sbjct: 198 GSGSPEKIKEL 208
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/164 (54%), Positives = 108/164 (65%), Gaps = 5/164 (3%)
Query: 44 SFKVEAKGE----WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWA 99
SF V A W PG P +L+GSLPGD GFDP GL DPE+L+W VQAELV+ RWA
Sbjct: 43 SFAVRAAAPERPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWA 102
Query: 100 MLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 159
MLG G+ +PE+ TKIGI+N P WY AG+ YFA ++TLF++E IL + E RRW DI
Sbjct: 103 MLGAAGIFIPELLTKIGILNTPSWYTAGEQTYFADTTTLFIVELILIGWAEGRRWADIIK 162
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEAKEKEL 202
PG VN DPIF L +VGYPGG+ F+PL + K KEL
Sbjct: 163 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKEL 206
>gi|161376574|gb|ABX71549.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376576|gb|ABX71550.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376578|gb|ABX71551.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376580|gb|ABX71552.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376582|gb|ABX71553.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376584|gb|ABX71554.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376586|gb|ABX71555.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376588|gb|ABX71556.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376590|gb|ABX71557.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376592|gb|ABX71558.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376594|gb|ABX71559.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376596|gb|ABX71560.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376598|gb|ABX71561.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376600|gb|ABX71562.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376602|gb|ABX71563.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376604|gb|ABX71564.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376606|gb|ABX71565.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376608|gb|ABX71566.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376610|gb|ABX71567.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
Length = 135
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 88/91 (96%)
Query: 115 IGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL 174
IGI+N P+WYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSL
Sbjct: 1 IGILNVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSL 60
Query: 175 PPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
PPNEVGYPGGIFNPLNFAPT EAKEKELANG
Sbjct: 61 PPNEVGYPGGIFNPLNFAPTAEAKEKELANG 91
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 111/169 (65%), Gaps = 6/169 (3%)
Query: 40 SSSASFKVEAKGE-----WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
++ SF V A + W PG P +L+GSLPGD GFDP GL DPE+L+W VQAELV
Sbjct: 50 AARPSFAVRAAADSDRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELV 109
Query: 95 NSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRW 154
+ RWAMLG G+ +PE TKIG++N P WY AG+ +YF ++TLF+IE IL + E RRW
Sbjct: 110 HCRWAMLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYFTDTTTLFIIELILIGWAEGRRW 169
Query: 155 QDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEAKEKEL 202
DI PGSVN DPIF L +VGYPGG+ F+PL + K KEL
Sbjct: 170 ADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKEL 218
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 124/202 (61%), Gaps = 8/202 (3%)
Query: 9 SAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA--SFKVEAKGE----WLPGLASPTY 62
+A P A ++ G +G+ R + + SSSA SF V A W PG P +
Sbjct: 12 TAVAALPGAPRASSFLGGAGRSGRLLLRQAESSSARASFAVRAAAPDRPIWFPGSTPPPW 71
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQ 122
L+GSLPGD GFDPLGL DPE+L+W VQA+LV+ RWAMLG G+ +PE TKIGI+N P
Sbjct: 72 LDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLGAAGIFIPEFLTKIGILNTPS 131
Query: 123 WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQD-IKNPGSVNQDPIFKQYSLPPNEVGY 181
WY AG+ +YF ++TLF+IE IL + E RRW D I NPG VN DPIF Q + + G
Sbjct: 132 WYTAGEHQYFTDTTTLFIIELILIGWAEGRRWADIIINPGCVNTDPIFPQQQVHGHRRGE 191
Query: 182 PGGIF-NPLNFAPTDEAKEKEL 202
P G++ +PL + K KEL
Sbjct: 192 PCGLWLDPLGWGTVSPEKIKEL 213
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 125/219 (57%), Gaps = 20/219 (9%)
Query: 1 MATVTTQASAAVFRPCAS-----------KSRFLTGSSGKLNREVALKPVSSSASFKVEA 49
MAT +S P +S K+ FL +G+ R A ++ A F V A
Sbjct: 1 MATAVCASSTIAVAPSSSAQKKPNEIVSAKTTFL---AGRPLRNKAHVAKAAKAVFSVTA 57
Query: 50 KGE-----WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVV 104
W PG P +L+GSLP D GFDPLGL +PE LKW+VQ+E+V+SRWAMLG
Sbjct: 58 AAATERPLWFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAA 117
Query: 105 GMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN 164
G+ +PE TK+GI+N P WY AG+ EYF +TLF++E IL + E RRW DI PGSVN
Sbjct: 118 GIFIPEALTKLGILNTPFWYTAGEQEYFTDQTTLFIVEMILLGWAEGRRWADILKPGSVN 177
Query: 165 QDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEAKEKEL 202
DP+F L +VGYPGG F+P + K KEL
Sbjct: 178 TDPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKEL 216
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 118/191 (61%), Gaps = 5/191 (2%)
Query: 17 ASKSRFLTGSSGKLNRE-VALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNG 72
S FL+G ++ +E A+ S + A+ + W PG P +L+G+LPGD G
Sbjct: 25 GSGGCFLSGRKLRVKKERAAIGGRSMGTTVCAVAEPDRPLWFPGSTPPPWLDGTLPGDFG 84
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYF 132
FDPLGL DPE+L+W VQAELV+ RWAMLG G+ +PE TKIG++N P WY AG+ EYF
Sbjct: 85 FDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPSWYSAGELEYF 144
Query: 133 ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF 191
++TLF++E + E RRW DI PG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 145 TDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 204
Query: 192 APTDEAKEKEL 202
K K+L
Sbjct: 205 GTGSPQKIKDL 215
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/151 (54%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG P +L+GSLP D GFDPLGL +PE LKW+VQ+E+V+SRWAMLG G+ +PE
Sbjct: 66 WFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEAL 125
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
TK+GI+N P WY AG+ EYF +TLF++E IL + E RRW DI PGSVN DP+F
Sbjct: 126 TKLGILNTPFWYTAGEQEYFTDQTTLFIVEMILLGWAEGRRWADILKPGSVNTDPVFPNN 185
Query: 173 SLPPNEVGYPGGI-FNPLNFAPTDEAKEKEL 202
L +VGYPGG F+P + K KEL
Sbjct: 186 KLTGTDVGYPGGFWFDPFGWGTASPEKLKEL 216
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 122/220 (55%), Gaps = 34/220 (15%)
Query: 15 PCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPG 69
P + FL G K+N +A PV ++ V A E W PG P +L+GSLPG
Sbjct: 25 PMGTSKAFL-GRKLKVNSNIA-APVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPG 82
Query: 70 DNGFDPLGL--------------------------AEDPENLKWYVQAELVNSRWAMLGV 103
D GFDPLGL A DPE+LKW VQAELV+ RWAMLG
Sbjct: 83 DFGFDPLGLYNGGLIILAGNTNDHNINQSFGCDSTASDPESLKWNVQAELVHCRWAMLGA 142
Query: 104 VGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSV 163
G+ +PE TKIGI+N P WY AG+ EYF ++TLF++E I + E RRW DI NPG V
Sbjct: 143 AGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILNPGCV 202
Query: 164 NQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEAKEKEL 202
N DPIF L +VGYPGG+ F+PL + K KEL
Sbjct: 203 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKEL 242
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG P+ LK E+ N R AML V+G ++T G I+
Sbjct: 221 PGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 280
Query: 125 DAGKAEYFAS 134
D G A FA+
Sbjct: 281 DPGHATIFAA 290
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P +L+GSLPGD GFDPLGL+ DPE+L+W VQAELV+SRWAMLG G+ +PE TK+GI+N
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 120 APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV 179
P WY AG+ EYF ++TLF++E + + E RRW DI NPG VN DPIF L +V
Sbjct: 61 TPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDV 120
Query: 180 GYPGGI-FNPLNFAPTDEAKEKEL 202
GYPGG+ F+PL + K KEL
Sbjct: 121 GYPGGLWFDPLGWGSASPQKLKEL 144
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/206 (48%), Positives = 127/206 (61%), Gaps = 12/206 (5%)
Query: 21 RFLTGSSGKLNREVALK-PVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPL 76
R L S + R + L VS++ S +V + E WLPG P+YL G LPGD GFDPL
Sbjct: 5 RPLHASRAAILRHLELLLTVSAARSARVVVRAERASWLPGSEIPSYLKGELPGDFGFDPL 64
Query: 77 GLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI---INAPQWYDAGKAEYFA 133
L EDP LKWY QAEL N RWAML G+L ++ +G A W+ A YFA
Sbjct: 65 RLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDLLGHLGAGGPAAATPWFKASDFTYFA 124
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP-NEVGYPGGIFNPLNFA 192
+STLF++E +LF +VE+RR+QD+ PGS NQDPIF QYSLP NE GYPGGIF+PL ++
Sbjct: 125 PTSTLFIVELLLFAWVEVRRYQDMVKPGSTNQDPIFSQYSLPSGNEPGYPGGIFDPLGYS 184
Query: 193 PTD--EAKEKELANGNNS--AKLAYF 214
+ E K KE+ N + A L +F
Sbjct: 185 KGNMAELKLKEIKNARLAMLAVLGFF 210
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/197 (48%), Positives = 122/197 (61%), Gaps = 9/197 (4%)
Query: 26 SSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDP 82
S+ L VA K +S V A + W PG A +L+GSLPGD GFDPL L+ DP
Sbjct: 9 STAGLKTRVATKTRASRGPVAVSANADRPVWYPGKAPAAHLDGSLPGDYGFDPLSLSADP 68
Query: 83 ENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIE 142
E +W VQAEL ++RWAMLGV G + PE+ TKIG+ + P W DA +Y+A TLF I+
Sbjct: 69 EMRQWMVQAELQHARWAMLGVAGCVAPELLTKIGVADLPNWVDAATYQYWAPGGTLFFIQ 128
Query: 143 FILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN-EVGYPGGIFNPLNFA----PTDEA 197
+F++ EIRRWQD+KNPGSVN DP+F S N +VGYP G+F+ +A T E
Sbjct: 129 MAMFNWAEIRRWQDMKNPGSVNTDPLFGYNSNDTNTDVGYPKGLFDKFGWAKDEKTTAEL 188
Query: 198 KEKELANGNNSAKLAYF 214
K KE+ NG A LA+
Sbjct: 189 KLKEIKNG-RLAMLAFL 204
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 109/157 (69%), Gaps = 4/157 (2%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W+PG +P +L LPGD GFDPL L +DPE+LKWYVQAEL + RWAMLGV G PE+
Sbjct: 2 WMPGATAPAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAAAPEIL 61
Query: 113 TKIGIINAPQWYDAGKAE-YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI-FK 170
T +GI N P W++A + YF ++TLF ++ ++ ++ E+RRWQDI+ PGSV++DP F
Sbjct: 62 TNMGISNLPNWHEAPSYDGYFTDATTLFWVQMLMMNWAEVRRWQDIRKPGSVSEDPTPFS 121
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPTD--EAKEKELANG 205
LP VGYPGGIF+PL +A D K KE+ANG
Sbjct: 122 NAKLPAGVVGYPGGIFDPLGYAKGDLKTLKAKEIANG 158
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 110/160 (68%), Gaps = 6/160 (3%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W+PG P YLNG+LPGD GFDPL L +DP LKWY QAEL+N+R+AML V G+L+PE+
Sbjct: 61 WMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELL 120
Query: 113 TKIGII---NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
+ IG WYDAGK EYFA +S+LF ++ +LF +VEIRR+QD PGS NQDPIF
Sbjct: 121 SNIGFSWPGAGVAWYDAGKFEYFAPASSLFGVQMLLFAWVEIRRYQDFVKPGSANQDPIF 180
Query: 170 KQYSLPP-NEVGYPGGIFNPLNFAPTD--EAKEKELANGN 206
LP NE GYPGGIF+P ++ D K KE+ NG
Sbjct: 181 TNNKLPDGNEPGYPGGIFDPFGWSKGDIKSLKLKEIKNGR 220
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 110/160 (68%), Gaps = 6/160 (3%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W+PG P YLNG+LPGD GFDPL L +DP LKWY QAEL+N+R+AML V G+L+PE+
Sbjct: 61 WMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELL 120
Query: 113 TKIGII---NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
+ IG WYDAGK EYFA +S+LF ++ +LF +VEIRR+QD PGS NQDPIF
Sbjct: 121 SNIGFSWPGAGVAWYDAGKFEYFAPASSLFGVQMLLFAWVEIRRYQDFVKPGSANQDPIF 180
Query: 170 KQYSLPP-NEVGYPGGIFNPLNFAPTD--EAKEKELANGN 206
LP NE GYPGGIF+P ++ D K KE+ NG
Sbjct: 181 TNNKLPDGNEPGYPGGIFDPFGWSKGDIKSLKLKEIKNGR 220
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 114/175 (65%), Gaps = 5/175 (2%)
Query: 32 REVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWY 88
R + S EA E W PG A +L+GSLPGD GFDPL L+ DPE KW
Sbjct: 18 RATTTRASRRSVVVSAEAGAERPVWYPGKAPAPHLDGSLPGDFGFDPLSLSADPEMRKWM 77
Query: 89 VQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHY 148
VQAEL ++RWAMLGV G + PE+ TKIG+ + P W DAG +Y+A + LF I+ +F++
Sbjct: 78 VQAELQHARWAMLGVAGAVAPELLTKIGVADLPNWVDAGTYQYWAPAGPLFFIQMAMFNW 137
Query: 149 VEIRRWQDIKNPGSVNQDPIFKQYSLPPN-EVGYPGGIFNPLNFAPTDEAKEKEL 202
E+RRWQD+KNPGS+N DP+F S N +VGYPGG+F+ L +A D AK KEL
Sbjct: 138 AEVRRWQDMKNPGSMNTDPLFGYNSNDTNTDVGYPGGLFDKLGYA-KDPAKAKEL 191
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 110/160 (68%), Gaps = 6/160 (3%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W+PG P YLNG+LPGD GFDPL L +DP LKWY QAEL+N+R+AML V G+L+PE+
Sbjct: 47 WMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELL 106
Query: 113 TKIGII---NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
+ IG WYDAGK EYFA +S+LF ++ +LF +VEIRR+QD PGS NQDPIF
Sbjct: 107 SNIGFSWPGAGVAWYDAGKFEYFAPASSLFGVQMLLFAWVEIRRYQDFVKPGSANQDPIF 166
Query: 170 KQYSLPP-NEVGYPGGIFNPLNFAPTD--EAKEKELANGN 206
LP NE GYPGGIF+P ++ D K KE+ NG
Sbjct: 167 TNNKLPDGNEPGYPGGIFDPFGWSKGDIKSLKLKEIKNGR 206
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 123/187 (65%), Gaps = 12/187 (6%)
Query: 31 NREVALKPVSSSASFKVE------AKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPEN 84
+R V + V+S A V A+ WLPG +P +L+G+LP D GFDPL L DPEN
Sbjct: 17 SRTVRPRGVASKARASVRVGAVAAARPTWLPGSPAPAHLDGTLPCDYGFDPLNLGADPEN 76
Query: 85 LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAE-YFASSSTLFVIEF 143
LKW+VQAEL++ RWAMLG+ GM+ PE+ TKIG+ + P W DAGK + Y+ + LF ++
Sbjct: 77 LKWFVQAELMHCRWAMLGLAGMVGPELLTKIGMADLPNWIDAGKWDGYWLGAGPLFFVQM 136
Query: 144 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN-EVGYPGGIFNPLNFA----PTDEAK 198
+ ++ E+RRWQD+K PG++N+DP+ N +VGYP G+F+P+ +A +E K
Sbjct: 137 AMMNWAEVRRWQDMKAPGTMNEDPLTGANKGDTNTDVGYPKGLFDPMGYAKDPKKAEELK 196
Query: 199 EKELANG 205
KE+ANG
Sbjct: 197 RKEIANG 203
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 55 PGLASPTYLNGSLPGDNG---------FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
PG + L G+ GD FDP+G A+DP+ + + E+ N R AM+ +VG
Sbjct: 153 PGTMNEDPLTGANKGDTNTDVGYPKGLFDPMGYAKDPKKAEELKRKEIANGRLAMVAIVG 212
Query: 106 MLLPEVFTKIGIIN 119
+ T G ++
Sbjct: 213 CFAQAISTGTGPVD 226
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/185 (50%), Positives = 116/185 (62%), Gaps = 24/185 (12%)
Query: 34 VALKPVSSSASFKVEAKGE----WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
VA +P + SA V AK WLPG P +L G LPGD GFDPLGL + E+LKW+
Sbjct: 9 VAARPSARSARRSVVAKASSRPLWLPGSTPPAHLKGDLPGDFGFDPLGLGANAESLKWFK 68
Query: 90 QAELVNSRWAMLGVVGMLL-----PEVFTKIGIINAPQWYDAGK-AEYFASSSTLFVIEF 143
++ELV+SRWAM V G+L+ P+VF WY+AGK E L +EF
Sbjct: 69 ESELVHSRWAMAAVAGILVQEIVRPDVF----------WYNAGKEVESPLGPLGLLAVEF 118
Query: 144 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD--EAKEKE 201
L H+VE+RRWQD++ PGSV+QDPIF QY LPP+EVGYPGG+F P F P D E K KE
Sbjct: 119 FLMHWVEVRRWQDLRKPGSVDQDPIFSQYKLPPHEVGYPGGVFAP--FIPGDLAELKVKE 176
Query: 202 LANGN 206
+ NG
Sbjct: 177 IKNGR 181
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/161 (52%), Positives = 108/161 (67%), Gaps = 6/161 (3%)
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
W+PG P YL+G+LPGD GFDPL L +P LKWY QAELV++R+AML V G+L+PE+
Sbjct: 60 SWMPGATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPEL 119
Query: 112 FTKIGII---NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 168
T IG WYDAGK +YFA +S+LF ++ +LF + E+RR+QD PGS NQDPI
Sbjct: 120 LTNIGFSWPGAGVAWYDAGKFQYFAPASSLFGVQMLLFAWAELRRYQDFVKPGSANQDPI 179
Query: 169 FKQYSLPP-NEVGYPGGIFNPLNFAPTD--EAKEKELANGN 206
F LP NE GYPGGIF+P ++ D K KE+ NG
Sbjct: 180 FSNNKLPDGNEPGYPGGIFDPFGWSKGDMKSLKTKEIKNGR 220
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 130/194 (67%), Gaps = 12/194 (6%)
Query: 16 CASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-WLPGLASPTYLNGSLPGDNGFD 74
C+ SR T S +R V+ + S+ ASF V+A+ + W PG+ +P +L+GSLPGD GFD
Sbjct: 3 CSITSRVNT--SALKSRSVSRQ--SARASFVVKAQRDVWWPGVDAPAHLDGSLPGDFGFD 58
Query: 75 PLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFAS 134
PLGL+ DPE KW VQAEL ++RWAMLGV GM+ P+ + + P W +AGK EY+A
Sbjct: 59 PLGLSVDPEMKKWMVQAELQHARWAMLGVAGMVGPD----LAPWDTPSWIEAGKFEYWAP 114
Query: 135 SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN-EVGYPGGIFNPLNFAP 193
+ LF I+ + ++ E+RRWQD+K+PGS+N+DP+F + N +VGYPGG+F+ L +A
Sbjct: 115 AGPLFFIQMAMMNWAEVRRWQDMKDPGSMNKDPLFGYNANDTNTDVGYPGGLFDKLGYAK 174
Query: 194 T--DEAKEKELANG 205
D K KE+ NG
Sbjct: 175 KDLDTLKLKEIKNG 188
>gi|414590634|tpg|DAA41205.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
gi|414590635|tpg|DAA41206.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 196
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 107/169 (63%), Gaps = 11/169 (6%)
Query: 18 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPGDNG 72
+ S FL G + L + A +P SF V A + W PG P +L+GSLPGD G
Sbjct: 24 ASSSFLGGKT-LLRQAEAARP-----SFAVRAAADPNRPIWFPGSTPPPWLDGSLPGDFG 77
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYF 132
FDP GL DPE+L+W VQAELV+ RWAMLG G+ +PE TKIG++N P WY AG+ +YF
Sbjct: 78 FDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYF 137
Query: 133 ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGY 181
++TLF+IE IL + E RRW DI PGSVN DPIF L +VGY
Sbjct: 138 TDTTTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGY 186
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 116/188 (61%), Gaps = 7/188 (3%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQA 91
R A K VSS + W PG + P +L+GSLPGD GFDPLGL DPE+LKW+ QA
Sbjct: 38 RVNATKGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQA 97
Query: 92 ELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEI 151
EL++ RWAML G+L+PE ++G I+ W+DAG EYFA +TLFV++ IL ++E
Sbjct: 98 ELIHGRWAMLAAAGILIPEWLERLGFIDNFNWFDAGTREYFADPTTLFVVQLILMGWIEG 157
Query: 152 RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANG 205
RRW D+ PG V+ DP + P +VGYPGG+ F+P N+ P + KE+ NG
Sbjct: 158 RRWADMIKPGCVDIDPKLPHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNG 217
Query: 206 NNSAKLAY 213
A LA+
Sbjct: 218 -RLAMLAF 224
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 116/188 (61%), Gaps = 7/188 (3%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQA 91
R A K VSS + W PG + P +L+GSLPGD GFDPLGL DPE+LKW+ QA
Sbjct: 38 RVNATKGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQA 97
Query: 92 ELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEI 151
EL++ RWAML G+L+PE ++G I+ W+DAG EYFA +TLFV++ IL ++E
Sbjct: 98 ELIHGRWAMLAAAGILIPEWLERLGFIDNFNWFDAGTREYFADPTTLFVVQLILMGWIEG 157
Query: 152 RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANG 205
RRW D+ PG V+ DP + P ++GYPGG+ F+P N+ P + KE+ NG
Sbjct: 158 RRWADMIKPGCVDIDPKLPHKTKPKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNG 217
Query: 206 NNSAKLAY 213
A LA+
Sbjct: 218 -RLAMLAF 224
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 110/168 (65%), Gaps = 7/168 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPGD GFDPLGL DPE LKW QAEL+++RWAMLGV G+L+PE+
Sbjct: 65 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEIL 124
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
KIG + WY+AG EYFA +TLF+++ L +VE RRW DI NPGSV+ +P
Sbjct: 125 EKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNR 184
Query: 173 SLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGNNSAKLAYF 214
P +VGYPGG+ F+P+ + P + KE+ NG A LA+
Sbjct: 185 PNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNG-RLAMLAFL 231
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 110/167 (65%), Gaps = 7/167 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPGD GFDPLGL DPE LKW+ QAEL++SRWAML V G+L+PE+
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILVPELL 118
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
+IG I WYDAG EYF +TLFV++ L +VE RRW DI NPGSV+ +P
Sbjct: 119 ERIGYIENFSWYDAGTREYFVDPTTLFVVQMGLMGWVEGRRWADIVNPGSVDIEPKVPHV 178
Query: 173 SLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGNNSAKLAY 213
+ P +VGYPGG+ F+P+ + P + KE+ NG A LA+
Sbjct: 179 TNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNG-RLAMLAF 224
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 110/167 (65%), Gaps = 7/167 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPGD GFDPLGL DPE LKW+ QAEL++SRWAML V G+L+PE+
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILVPELL 118
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
+IG I WYDAG EYF +TLFV++ L +VE RRW DI NPGSV+ +P
Sbjct: 119 ERIGYIENFSWYDAGTREYFVDPTTLFVVQMGLMGWVEGRRWADIVNPGSVDIEPKVPHV 178
Query: 173 SLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGNNSAKLAY 213
+ P +VGYPGG+ F+P+ + P + KE+ NG A LA+
Sbjct: 179 TNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNG-GLAMLAF 224
>gi|414590633|tpg|DAA41204.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 199
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 106/168 (63%), Gaps = 11/168 (6%)
Query: 18 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLNGSLPGDNG 72
+ S FL G + L + A +P SF V A + W PG P +L+GSLPGD G
Sbjct: 24 ASSSFLGGKT-LLRQAEAARP-----SFAVRAAADPNRPIWFPGSTPPPWLDGSLPGDFG 77
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYF 132
FDP GL DPE+L+W VQAELV+ RWAMLG G+ +PE TKIG++N P WY AG+ +YF
Sbjct: 78 FDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYF 137
Query: 133 ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
++TLF+IE IL + E RRW DI PGSVN DPIF L +VG
Sbjct: 138 TDTTTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVG 185
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/185 (48%), Positives = 114/185 (61%), Gaps = 24/185 (12%)
Query: 34 VALKPVSSSASFKVEAKGE----WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
+A +P + SA V +K WLPG P +L G LPGD GFDPLGL + E+LKW+
Sbjct: 9 MAARPSARSARRSVVSKASSRPLWLPGSTPPAHLKGELPGDFGFDPLGLGANAESLKWFK 68
Query: 90 QAELVNSRWAMLGVVGMLL-----PEVFTKIGIINAPQWYDAGK-AEYFASSSTLFVIEF 143
++ELV+ RWAM V G+L+ P+VF WY+AGK E L +EF
Sbjct: 69 ESELVHCRWAMAAVAGILVQEIVRPDVF----------WYNAGKEVESPLGPLGLLAVEF 118
Query: 144 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD--EAKEKE 201
L H+VE+RRWQD++ PGSV+QDPIF QY LP +EVGYPGG+F P F P D E K KE
Sbjct: 119 FLMHWVELRRWQDLRKPGSVDQDPIFSQYKLPAHEVGYPGGVFAP--FIPGDLAELKVKE 176
Query: 202 LANGN 206
+ NG
Sbjct: 177 IKNGR 181
>gi|218199895|gb|EEC82322.1| hypothetical protein OsI_26601 [Oryza sativa Indica Group]
Length = 432
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 109/169 (64%), Gaps = 8/169 (4%)
Query: 2 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA--SFKVEAKGE----WLP 55
A+ +T A AA+ P A+++ G +G+ R + + SSSA SF V A W P
Sbjct: 6 ASSSTTAVAAL--PGAARASSFLGGAGRSGRLLLRQAESSSARASFAVRAAAPDRPIWFP 63
Query: 56 GLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
G P +L+GSLPGD GFDPLGL DPE+L+W VQAELV+ RWAMLG G+ +PE TKI
Sbjct: 64 GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKI 123
Query: 116 GIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN 164
GI+N P WY AG+ +YF ++TLF+IE IL + E RRW DI PG V
Sbjct: 124 GILNTPSWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIKPGCVG 172
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 117/202 (57%), Gaps = 6/202 (2%)
Query: 10 AAVFRPCASKSRFLTGSSGKLNREVALKP-VSSSASFKVEAKGEWLPGLASPTYLNGSLP 68
AA S FL + R A KP + + W PG+ +P+YL+GSLP
Sbjct: 2 AASVSQMIQASTFLGSKVAPVARATAAKPQAKFAVFAAKADRPLWCPGIPAPSYLDGSLP 61
Query: 69 GDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGK 128
GD G+DPL L+ P+ LKW VQAEL N+RWAMLGV GML ++ I N PQWYDA
Sbjct: 62 GDFGYDPLSLSNSPDKLKWMVQAELQNARWAMLGVAGMLSVDLLQGILPDNVPQWYDAPL 121
Query: 129 AE--YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV-GYPGGI 185
Y A +LF+I+ IL +VE RRW DI PGS N DP+F LP + GYPGG+
Sbjct: 122 LADVYPAEWKSLFIIQMILMGFVEARRWADINTPGSANVDPVFNNNKLPDSGTPGYPGGM 181
Query: 186 FNPLNFAP--TDEAKEKELANG 205
F+PL F+ +E+K KEL NG
Sbjct: 182 FDPLGFSKGNLEESKWKELRNG 203
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 110/167 (65%), Gaps = 7/167 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPGD GFDPLGL DPE LKW+ QAEL+++RWAML V G+L+PE+
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFGILVPELL 118
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
KIG I WYDAG EYF +TLFV++ L +VE RRW D+ NPGSV+ +P
Sbjct: 119 EKIGYIENFSWYDAGAREYFVDPTTLFVVQMGLMGWVEGRRWADMVNPGSVDIEPKVPHI 178
Query: 173 SLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGNNSAKLAY 213
+ P +VGYPGG+ F+P+ + P + KE+ NG A LA+
Sbjct: 179 TNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNG-RLAMLAF 224
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 110/168 (65%), Gaps = 7/168 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPG+ GFDPLGL DPE LKW QAEL+++RWAMLGV G+L+PE+
Sbjct: 65 WFPGSSPPEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEIL 124
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
KIG + WY+AG EYFA +TLF+++ L +VE RRW DI NPGSV+ +P
Sbjct: 125 EKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNR 184
Query: 173 SLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGNNSAKLAYF 214
P +VGYPGG+ F+P+ + P + KE+ NG A LA+
Sbjct: 185 PNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNG-RLAMLAFL 231
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 105/158 (66%), Gaps = 6/158 (3%)
Query: 55 PGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
P P YL+G+LPGD GFDPL L +P LKWY QAELV++R+AML V G+L+PE+ T
Sbjct: 63 PAATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTN 122
Query: 115 IGII---NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
IG WYDAGK +YFA +S+LF ++ +LF + E+RR+QD PGS NQDPIF
Sbjct: 123 IGFSWPGAGVAWYDAGKFQYFAPASSLFGVQMLLFAWAELRRYQDFVKPGSANQDPIFSN 182
Query: 172 YSLPP-NEVGYPGGIFNPLNFAPTD--EAKEKELANGN 206
LP NE GYPGGIF+P ++ D K KE+ NG
Sbjct: 183 NKLPDGNEPGYPGGIFDPFGWSKGDMKSLKTKEIKNGR 220
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 121/202 (59%), Gaps = 12/202 (5%)
Query: 24 TGSSGKLNREV-----ALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGL 78
+ + G+L RE A K VSS + W PG + P +L+GSLPGD GFDPLGL
Sbjct: 34 SSTGGRLMRERLVVVRAGKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGL 93
Query: 79 AEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTL 138
DP+ LKW+ QAEL++SRWAML V G+++PE ++G I WYDAG EYFA S+TL
Sbjct: 94 GSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTL 153
Query: 139 FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA----- 192
FV + +L + E RRW D+ PGSV+ +P + P +VGYPGG+ F+ + +
Sbjct: 154 FVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPE 213
Query: 193 PTDEAKEKELANGNNSAKLAYF 214
P + KE+ NG A LA+
Sbjct: 214 PVMVLRTKEIKNG-RLAMLAFL 234
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 121/202 (59%), Gaps = 12/202 (5%)
Query: 24 TGSSGKLNREV-----ALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGL 78
+ + G+L RE A K VSS + W PG + P +L+GSLPGD GFDPLGL
Sbjct: 34 SSTGGRLMRERLVVVRAGKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGL 93
Query: 79 AEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTL 138
DP+ LKW+ QAEL++SRWAML V G+++PE ++G I WYDAG EYFA S+TL
Sbjct: 94 GSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTL 153
Query: 139 FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA----- 192
FV + +L + E RRW D+ PGSV+ +P + P +VGYPGG+ F+ + +
Sbjct: 154 FVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPE 213
Query: 193 PTDEAKEKELANGNNSAKLAYF 214
P + KE+ NG A LA+
Sbjct: 214 PVMVLRTKEIKNG-RLAMLAFL 234
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 121/202 (59%), Gaps = 12/202 (5%)
Query: 24 TGSSGKLNREV-----ALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGL 78
+ + G+L RE A K VSS + W PG + P +L+GSLPGD GFDPLGL
Sbjct: 34 SSTGGRLMRERLVVVRAGKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGL 93
Query: 79 AEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTL 138
DP+ LKW+ QAEL++SRWAML V G+++PE ++G I WYDAG EYFA S+TL
Sbjct: 94 GSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTL 153
Query: 139 FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA----- 192
FV + +L + E RRW D+ PGSV+ +P + P +VGYPGG+ F+ + +
Sbjct: 154 FVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPE 213
Query: 193 PTDEAKEKELANGNNSAKLAYF 214
P + KE+ NG A LA+
Sbjct: 214 PVMVLRTKEIKNG-RLAMLAFL 234
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 108/167 (64%), Gaps = 7/167 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPGD GFDPLGL DPE LKW+ QAEL++SRWAML V G+L+PE
Sbjct: 95 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPEWL 154
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
+G I W+DAG EYFA +TLF+++ +L +VE RRW D+ PG V+ +P
Sbjct: 155 ESLGFIENYNWFDAGAREYFADPTTLFIVQLVLMGWVEGRRWADMIKPGCVDIEPTLPNK 214
Query: 173 SLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGNNSAKLAY 213
+ P +VGYPGG+ F+PL + P + KE+ NG A LA+
Sbjct: 215 TKPKPDVGYPGGLWFDPLMWGRGSPEPVMVLRTKEIKNG-RLAMLAF 260
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 112/184 (60%), Gaps = 23/184 (12%)
Query: 34 VALKP---VSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQ 90
VA++P S K ++ WLPG P +L G LPGD GFDPLGL +P++LKW+ +
Sbjct: 9 VAVRPSGVARRSVVAKASSRPLWLPGSTPPAHLKGELPGDFGFDPLGLGANPDSLKWFRE 68
Query: 91 AELVNSRWAMLGVVGMLL-----PEVFTKIGIINAPQWYDAG-KAEYFASSSTLFVIEFI 144
+ELV+SRWAM V G+L+ P+VF WY AG + E L EF
Sbjct: 69 SELVHSRWAMAAVAGILVQEIVRPDVF----------WYSAGSQVESPLGPLGLLAFEFF 118
Query: 145 LFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD--EAKEKEL 202
H+VE+RRWQD++ PGSV+QDPIF QY LPP+E GYPGG+F P F P D E K KE+
Sbjct: 119 CMHWVELRRWQDLRKPGSVDQDPIFSQYKLPPHEPGYPGGVFAP--FIPGDLAELKVKEI 176
Query: 203 ANGN 206
NG
Sbjct: 177 KNGR 180
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 121/204 (59%), Gaps = 14/204 (6%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE--------WLPGLASPTYLNGSLP 68
A++ R L S+ ++ + V + A +V + E W PG A P +L+GSLP
Sbjct: 23 ATQRRPLVASASPTGGRMSERLVVARAGKEVSSVCEPLPPDRPLWFPGSAPPEWLDGSLP 82
Query: 69 GDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGK 128
GD GFDPLGL DP+ LKW+ QAEL++SRWAML V G+L+PE ++G I WY+AG
Sbjct: 83 GDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGILIPECLERLGFIENFSWYEAGS 142
Query: 129 AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FN 187
EYFA S+TLFV + +L + E RRW D+ PGSV+ +P + P +VGYPGG+ F+
Sbjct: 143 REYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFD 202
Query: 188 PLNFA-----PTDEAKEKELANGN 206
+ + P + KE+ NG
Sbjct: 203 FMMWGRGSPEPVMVLRTKEIKNGR 226
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 127/221 (57%), Gaps = 9/221 (4%)
Query: 1 MATVTTQASAAVFRPCASKS--RFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA 58
++ +T S+ R +SK R LT R A K VSS + W PG +
Sbjct: 3 LSIASTAFSSLPTREVSSKHFPRKLTTWLPGRVRLNATKGVSSVCEPLPPDRPLWFPGSS 62
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
P +L+GSLPGD GFDPLGL DPE L+W+ QAEL++SRWAML V G+L+PE ++G I
Sbjct: 63 PPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILIPECLERLGFI 122
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
WYDAG E+FA +TLFV++ L +VE RRW D+ NPG V+ F + P +
Sbjct: 123 ENFSWYDAGAQEFFADPTTLFVVQLALMGWVEGRRWADLINPGCVDIQLTFPNKAKPKPD 182
Query: 179 VGYPGGI-FNPLNFA-----PTDEAKEKELANGNNSAKLAY 213
VGYPGG+ F+P + P + KE+ NG A LA+
Sbjct: 183 VGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNG-RLAMLAF 222
>gi|388505428|gb|AFK40780.1| unknown [Medicago truncatula]
Length = 230
Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 105/160 (65%), Gaps = 6/160 (3%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPGD GFDPLGL DPE LKW QAEL+++RWAMLGV G+L+PE+
Sbjct: 65 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEIL 124
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
KIG + WY+AG EYFA +TLF+++ L +VE RRW DI NPGSV+ +P
Sbjct: 125 EKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNR 184
Query: 173 SLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGN 206
P +VGYPGG+ F+P+ + P + K L G+
Sbjct: 185 PNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKRLRMGD 224
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 114/188 (60%), Gaps = 7/188 (3%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQA 91
R A K VSS + W PG + P +L+GSLPGD GFDPLGL DPE L+W+ QA
Sbjct: 6 RLNATKGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQA 65
Query: 92 ELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEI 151
EL++SRWAML V G+L+PE ++G I WYDAG E+FA +TLFV++ L +VE
Sbjct: 66 ELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAQEFFADPTTLFVVQLALMGWVEG 125
Query: 152 RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANG 205
RRW D+ NPG V+ F + P +VGYPGG+ F+P + P + KE+ NG
Sbjct: 126 RRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNG 185
Query: 206 NNSAKLAY 213
A LA+
Sbjct: 186 -RLAMLAF 192
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 106/160 (66%), Gaps = 6/160 (3%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPGD GFDP+GL DPE LKW QAEL+++RWAMLGV G+L+PE+
Sbjct: 57 WFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELL 116
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
K+G + WY+AG EYFA +TLF+++ L +VE RRW D+ NPGSV+ +P
Sbjct: 117 EKMGYVENYSWYEAGTQEYFADPTTLFIVQLALMGWVEGRRWADLVNPGSVDIEPKLPNR 176
Query: 173 SLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGN 206
P +VGYPGG+ F+P+ + P + KE+ NG
Sbjct: 177 PNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGR 216
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 112/189 (59%), Gaps = 11/189 (5%)
Query: 29 KLNREVA-LKPVSSSASFKVEA----KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPE 83
KL R+ + LK S S E + W PG + P +L+GSLPGD GFDPLGL DPE
Sbjct: 34 KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
Query: 84 NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEF 143
LKW+ QAEL+++RWAML V G+LLPE F +G+I WYDAG EYFA +TL V +
Sbjct: 94 TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
Query: 144 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA-----PTDEA 197
L +VE RRW D+ NPGSV+ D +VGYPGG F+P+ + P
Sbjct: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVL 213
Query: 198 KEKELANGN 206
+ KE+ NG
Sbjct: 214 RTKEIKNGR 222
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 112/189 (59%), Gaps = 11/189 (5%)
Query: 29 KLNREVA-LKPVSSSASFKVEA----KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPE 83
KL R+ + LK S S E + W PG + P +L+GSLPGD GFDPLGL DPE
Sbjct: 34 KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
Query: 84 NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEF 143
LKW+ QAEL+++RWAML V G+LLPE F +G+I WYDAG EYFA +TL V +
Sbjct: 94 TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
Query: 144 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA-----PTDEA 197
L +VE RRW D+ NPGSV+ D +VGYPGG F+P+ + P
Sbjct: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAMADVGYPGGFWFDPMMWGRGSPEPVMVL 213
Query: 198 KEKELANGN 206
+ KE+ NG
Sbjct: 214 RTKEIKNGR 222
>gi|18539429|gb|AAL74385.1|AF359117_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
gi|18539431|gb|AAL74386.1|AF359118_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
Length = 137
Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 90/129 (69%), Gaps = 1/129 (0%)
Query: 39 VSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRW 98
V+ S + + E + W PG P +L+GSLPGD GFDPLGL DPE LKW VQAELV+ RW
Sbjct: 10 VTVSQAVQTE-RPLWFPGNTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRW 68
Query: 99 AMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK 158
AMLG G+ +PE+ TK+GI+N P WY AG+ EYF +TLFV+E I + E RRW DI
Sbjct: 69 AMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDKTTLFVVEMIFLGWAEGRRWADIL 128
Query: 159 NPGSVNQDP 167
PGSVN DP
Sbjct: 129 KPGSVNTDP 137
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 121/199 (60%), Gaps = 10/199 (5%)
Query: 18 SKSRFLTGSSGKLNREVALKPVSSSASFKVEA---KGEWLPGLASPTYLNGSLPGDNGFD 74
S+ F TG + +R +L S+ +S + A + + PG P +L+G++PGD GFD
Sbjct: 6 SQQTFRTGLMIRAHRHRSLGCRSARSSVRTVAAAVRPNYFPGSTPPKHLDGTMPGDYGFD 65
Query: 75 PLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN-APQWYDAGKAE-YF 132
PLGL ED L WY QAEL+++RWAMLGV GM PE+F + P W DA + Y
Sbjct: 66 PLGLGEDKAALAWYQQAELMHARWAMLGVAGMAAPEIFGNPLVDGPLPNWADAPFYDGYI 125
Query: 133 ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYP-GGIFNPLNF 191
A ++TLFV++ L ++ E+RRWQD+KNPGSV+ DP + +VGYP GG+FNP+
Sbjct: 126 ADANTLFVVQMFLMNWAEVRRWQDMKNPGSVHADPYDESRKCTGTDVGYPGGGLFNPMGM 185
Query: 192 APTDEA----KEKELANGN 206
A + E + KE+ANG
Sbjct: 186 AKSAEEEKTLRTKEIANGR 204
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 112/187 (59%), Gaps = 6/187 (3%)
Query: 26 SSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL 85
+ G L+R A K VS+ + W PG + P +L+GSLPGD GFDPLGL +PE L
Sbjct: 43 TRGCLHRAGAAKGVSAVCEPLGPDRPVWFPGTSPPPWLDGSLPGDFGFDPLGLGSEPETL 102
Query: 86 KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFIL 145
+W+ QAEL++SRWAML V G+L+PE+ K G + WY AG+ EYFA TLF+ + L
Sbjct: 103 RWFAQAELMHSRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREYFADPWTLFIAQMAL 162
Query: 146 FHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA-----PTDEAKE 199
+ E RRW D NPGSV+ +P F P +VGYPGG+ F+ N+ P +
Sbjct: 163 MGWAEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRT 222
Query: 200 KELANGN 206
KE+ NG
Sbjct: 223 KEIKNGR 229
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 120/209 (57%), Gaps = 16/209 (7%)
Query: 10 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-----WLPGLASPTYLN 64
AA F + FLTG K+ + P S +F+V A W PG+ +P+YLN
Sbjct: 2 AATFTALNAAPAFLTGR--KVVSKARAGPAPRS-TFQVSAAASQGRRLWAPGVEAPSYLN 58
Query: 65 GSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV------FTKIGII 118
G L GD G+DPLGL PE LKWY QAELV++RWAML V G+L E+ F G+
Sbjct: 59 GELAGDYGWDPLGLGAKPEALKWYRQAELVHARWAMLAVAGILAQEIVKPGVFFYNAGLP 118
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
+ G E + L EF+LFH+VE+RRWQDIK SVNQDPIFK +P E
Sbjct: 119 ENLPGINFGGPEGKVNLGGLLAWEFLLFHWVEVRRWQDIKKKDSVNQDPIFKGNKVPNPE 178
Query: 179 VGYPGGIFNPLNFAPTD--EAKEKELANG 205
+GYPGGIF+P F+ + E + KE+ NG
Sbjct: 179 LGYPGGIFDPFGFSKGNFKEVQTKEIKNG 207
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 111/167 (66%), Gaps = 7/167 (4%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
+ + + WLPGL P YL+G+L GD GFDPLGL EDPE+LKWYVQAELV+SR+AM GV G
Sbjct: 60 RAQQRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAG 119
Query: 106 MLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN 164
+L ++ G+ N P WY+AG ++ FA+++TLF+++ +L +VE +R+ D KNPGS
Sbjct: 120 ILFTDLLRTTGLSNLPVWYEAGATKFQFANTTTLFIVQMLLMGFVETKRYMDFKNPGSQG 179
Query: 165 QDPIFK-QYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANG 205
+ F + +L E GYPGG I NPL A E K KE+ NG
Sbjct: 180 EASFFGLEAALEGLEPGYPGGPILNPLGIAKDIKNAPEWKLKEIKNG 226
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 113/192 (58%), Gaps = 11/192 (5%)
Query: 20 SRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPL 76
S FL + R P + A F V A W PG A +L+GSLPGD G+DPL
Sbjct: 9 STFLGSKVASVARAT---PAKAQAKFVVSASSNRPVWFPGNAPRAWLDGSLPGDFGYDPL 65
Query: 77 GLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSS 136
GL+ DP+ LKW VQAEL N+RWAMLGV GML ++ K+G+ A QWY+A +Y A
Sbjct: 66 GLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGLPAAVQWYEAPLVDYQADWK 125
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN-EVGYPGGIFNPLNFAPTD 195
TL V++ +L +VE RRW D +PGS N DP SLP GYPGG F+PL F+ +
Sbjct: 126 TLLVVQLVLHAWVEGRRWADFHSPGSANADPFGN--SLPSTATTGYPGGPFDPLGFSKGN 183
Query: 196 --EAKEKELANG 205
E K KE+ NG
Sbjct: 184 LPELKLKEIKNG 195
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 113/192 (58%), Gaps = 11/192 (5%)
Query: 20 SRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPL 76
S FL + R P + A F V A W PG A +L+GSLPGD G+DPL
Sbjct: 5 STFLGSKVASVARAT---PAKAQAKFVVSASSNRPVWFPGNAPRAWLDGSLPGDFGYDPL 61
Query: 77 GLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSS 136
GL+ DP+ LKW VQAEL N+RWAMLGV GML ++ K+G+ A QWY+A +Y A
Sbjct: 62 GLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGLPAAVQWYEAPLVDYQADWK 121
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN-EVGYPGGIFNPLNFAPTD 195
TL V++ +L +VE RRW D +PGS N DP SLP GYPGG F+PL F+ +
Sbjct: 122 TLLVVQLVLHAWVEGRRWADFHSPGSANADPFGN--SLPSTATTGYPGGPFDPLGFSKGN 179
Query: 196 --EAKEKELANG 205
E K KE+ NG
Sbjct: 180 LPELKLKEIKNG 191
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 129/221 (58%), Gaps = 20/221 (9%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKP-----VSSSASFKVEAKGE--- 52
MA++ + V C + +T L+R +A P S A V A E
Sbjct: 1 MASLGANSHGRVLHTCTLSPKPVTA----LSRSMAAIPGHHVFQSPRARIAVRASTERAT 56
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
WLPGL P +L+G+LPGD GFDPLGL E+P NLKWYVQAELV+ R+AM GV G+L ++
Sbjct: 57 WLPGLDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLI 116
Query: 113 TKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK- 170
GI N P W++AG ++ FA+++ LF ++ +L + E +R+ D NPGS ++ F
Sbjct: 117 RVSGINNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLG 176
Query: 171 -QYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANG 205
+ +L ++ GYPGG +FNPL A DEAK KE+ NG
Sbjct: 177 IEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNG 217
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 63 LNGSLPGDNG---FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
L GS PG G F+PLGLA+D EN E+ N R AM+ ++G ++ T +G I+
Sbjct: 181 LAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPID 240
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 114/180 (63%), Gaps = 8/180 (4%)
Query: 35 ALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
+ P + + WLPGL PTYL+G+LPGD GFDPLGL EDPE+LKWYVQAELV
Sbjct: 43 GVTPRCKQICAAAQQRPTWLPGLDPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELV 102
Query: 95 NSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRR 153
+SR+AMLGV+G+L+ ++ G+ + P W++AG +Y FA++ TL V++ +L Y E RR
Sbjct: 103 HSRFAMLGVLGILVTDLLRVAGVNSIPIWFEAGAVKYEFANTGTLVVVQLLLMGYAETRR 162
Query: 154 WQDIKNPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFA----PTDEAKEKELANGN 206
+ D +PGS ++ F + SL E GYPGG + NPL A E K KE+ NG
Sbjct: 163 YMDFVSPGSQAKEGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGR 222
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 101/160 (63%), Gaps = 6/160 (3%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG A P +L+GSLPGD GFDPLG +PE+L+W+ QAEL++ RWAML V G+L+PE+
Sbjct: 71 WFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAGILIPEIL 130
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
K G + WY AG+ EYFA TLFV + L +VE RRW D NPGSV+ +P F
Sbjct: 131 QKWGFMEEFSWYTAGEREYFADPWTLFVTQMALMGWVEGRRWMDYLNPGSVDIEPRFPNR 190
Query: 173 SLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGN 206
P +VGYPGG+ F+ N+ P + KE+ NG
Sbjct: 191 KNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGR 230
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 101/160 (63%), Gaps = 6/160 (3%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG A P +L+GSLPGD GFDPLG +PE+L+W+ QAEL++ RWAML V G+L+PE+
Sbjct: 71 WFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAGILIPEIL 130
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
K G + WY AG+ EYFA TLFV + L +VE RRW D NPGSV+ +P F
Sbjct: 131 QKWGFMEEFSWYTAGEREYFADPWTLFVTQMALMGWVEGRRWMDYLNPGSVDIEPRFPNR 190
Query: 173 SLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGN 206
P +VGYPGG+ F+ N+ P + KE+ NG
Sbjct: 191 KNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGR 230
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 105/167 (62%), Gaps = 7/167 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG A P +L+GSLPGD GFDPLG +PE+L+W+ QAEL++ RWAML V G+L+PE+
Sbjct: 68 WFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAGILIPEIL 127
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
K G + WY AG+ EYFA TLFV + L +VE RRW D NPGSV+ +P F
Sbjct: 128 QKWGFMEEFSWYTAGEREYFADPWTLFVTQMALMGWVEGRRWMDYLNPGSVDIEPRFPNR 187
Query: 173 SLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGNNSAKLAY 213
P +VGYPGG+ F+ N+ P + KE+ NG A LA+
Sbjct: 188 KNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNG-RLAMLAF 233
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 128/221 (57%), Gaps = 20/221 (9%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKP-----VSSSASFKVEAKGE--- 52
MA++ + V C + +T L+R +A P S A V A E
Sbjct: 1 MASLGANSHGRVLHTCTLSPKPVTA----LSRSMAAIPGHHVFQSPRARIAVRASTERAT 56
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
WLPGL P +L+G+LPGD GFDPLGL E+P NLKWYVQAELV+ R+AM GV G+L +
Sbjct: 57 WLPGLDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDFI 116
Query: 113 TKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK- 170
GI N P W++AG ++ FA+++ LF ++ +L + E +R+ D NPGS ++ F
Sbjct: 117 RVSGINNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLG 176
Query: 171 -QYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANG 205
+ +L ++ GYPGG +FNPL A DEAK KE+ NG
Sbjct: 177 IEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNG 217
Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 63 LNGSLPGDNG---FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
L GS PG G F+PLGLA+D EN E+ N R AM+ ++G ++ T +G I+
Sbjct: 181 LAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPID 240
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 123/214 (57%), Gaps = 8/214 (3%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
MA + A+A P +S L S L + A + E + WLPGL P
Sbjct: 1 MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
+L+G+L GD GFDPLGL EDP++LKWYVQAELV+ R+AMLGV G+LL ++ GI
Sbjct: 61 PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120
Query: 121 PQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPPN 177
P WY+AG EY FA+ TLF+++ +L +VE +R+ D K+PGS Q+ F + +
Sbjct: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL 180
Query: 178 EVGYPGG-IFNPLNFAP----TDEAKEKELANGN 206
E GYPGG + NPL A + K KE+ NG
Sbjct: 181 EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGR 214
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 111/175 (63%), Gaps = 8/175 (4%)
Query: 40 SSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWA 99
S + + + WLPGL P YLNG+L GD GFDPLGL EDPENL+WYVQAELV++R+A
Sbjct: 46 SHGTVVQAQQRPTWLPGLDPPPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFA 105
Query: 100 MLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 158
M GV G+L+ ++ GI N P WY+AG ++ FAS+ LF+++ IL +VE +R+ D
Sbjct: 106 MAGVAGILVTDLLRVTGISNLPVWYEAGAVKFEFASTEALFIVQLILMGFVETKRYMDFT 165
Query: 159 NPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANGN 206
NPGS ++ F + +L E GYPGG + NPL A + K KE+ NG
Sbjct: 166 NPGSQAKEGSFFGLEAALEGLEPGYPGGPLLNPLGLARDIKNAHDWKLKEIKNGR 220
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 110/174 (63%), Gaps = 8/174 (4%)
Query: 41 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
+ A + + + WLPGL SP YL+G+L GD GFDPLGL EDPE+LKWYVQAELV++R+AM
Sbjct: 51 TRAVVRAQQRPTWLPGLDSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAM 110
Query: 101 LGVVGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKN 159
LG+ G+L ++ GI P WY+AG +Y FAS+ TL V++ + Y E RR+ D +
Sbjct: 111 LGIAGILFTDLLRVTGIRKLPVWYEAGAVKYEFASTRTLLVVQLLWMGYAETRRYMDYVS 170
Query: 160 PGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFA----PTDEAKEKELANGN 206
PGS N++ F + +L E GYPGG + NP A + K KE+ NG
Sbjct: 171 PGSQNKEGSFFGMEAALEGLEPGYPGGPLLNPFGLAKDIRSARDWKLKEIKNGR 224
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 113/176 (64%), Gaps = 11/176 (6%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+ WLPGL P YL+G+L GD GFDPLGL EDPE+LKWYVQAELV+SR+AMLGV G+L
Sbjct: 46 RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105
Query: 110 EVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 168
++ GI N P WY+AG ++ FAS+ TL V++F+L + E +R+ D +PGS ++
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165
Query: 169 F---KQYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANGNNS--AKLAYF 214
F + +L E GYPGG + NPL A + K KE+ NG + A L +F
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFF 221
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 125/211 (59%), Gaps = 12/211 (5%)
Query: 8 ASAAVFRPCASKSR----FLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYL 63
A+ A R C SR F + S+ + A P + A + + WLPGL P YL
Sbjct: 4 AANAHGRVCTLSSRPPAPFSSRSTVAMPGHHAESPRARFAVRAIAERATWLPGLDPPAYL 63
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW 123
+G+LPGD GFDPLGL E PE+LKWYVQAELV+ R+AM GV G+L ++ GI N P W
Sbjct: 64 DGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGIGNLPVW 123
Query: 124 YDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK--QYSLPPNEVG 180
++AG ++ FA+++ LF ++ +L +VE +R+ D +PGS ++ F + SL + G
Sbjct: 124 FEAGATKFDFANTTALFFVQLLLMGFVETKRYMDFVSPGSQAKEGTFLGIEASLEGLQPG 183
Query: 181 YPGG-IFNPLNFAP----TDEAKEKELANGN 206
YPGG +FNP+ A +E K KE+ NG
Sbjct: 184 YPGGPLFNPMGLAKDIENANEVKLKEIKNGR 214
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+G +L AS L PG F+P+GLA+D EN E+ N R AM+ ++G ++
Sbjct: 167 EGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIENANEVKLKEIKNGRLAMVAMLGFIVQ 226
Query: 110 EVFTKIGIIN 119
T G I+
Sbjct: 227 ASVTHAGPID 236
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 113/176 (64%), Gaps = 11/176 (6%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+ WLPGL P YL+G+L GD GFDPLGL EDPE+LKWYVQAELV+SR+AMLGV G+L
Sbjct: 46 RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105
Query: 110 EVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 168
++ GI N P WY+AG ++ FAS+ TL V++F+L + E +R+ D +PGS ++
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165
Query: 169 F---KQYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANGNNS--AKLAYF 214
F + +L E GYPGG + NPL A + K KE+ NG + A L +F
Sbjct: 166 FFFGIEAALEGLEPGYPGGPLLNPLGLAKDVKNAHDWKLKEIKNGRLAMMAMLGFF 221
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 27/219 (12%)
Query: 7 QASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGS 66
AS+ + R +S + + G +N VA++ + WLPGL P YL+G+
Sbjct: 11 DASSVITRRISS----VKAAGGGINPTVAVE------------RATWLPGLNPPPYLDGN 54
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
L GD GFDPLGL EDPE+LKWYVQAELV+SR+AMLGV G+L ++ GI N P WY+A
Sbjct: 55 LAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEA 114
Query: 127 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNEVGYP 182
G ++ FAS+ TL V++F+L + E +R+ D +PGS ++ F + +L E GYP
Sbjct: 115 GAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYP 174
Query: 183 GG-IFNPLNFAP----TDEAKEKELANGNNS--AKLAYF 214
GG + NPL A + K KE+ NG + A L +F
Sbjct: 175 GGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFF 213
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 108/170 (63%), Gaps = 14/170 (8%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG+ +P YL G L GD G+DPLGL DP L+WY Q+ELV++RWAMLGV G+L+ EV
Sbjct: 35 WAPGVVAPDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEV- 93
Query: 113 TKIGIINAPQWYDAGKAEYFASSST------LFVIEFILFHYVEIRRWQDIKNPGSVNQD 166
+ +Y+AG + T L EFIL H+VE+RRWQD KN GSVN+D
Sbjct: 94 ----VKPDVYFYEAGLPQNLPEPFTNVNMGGLLAWEFILMHWVEVRRWQDYKNFGSVNED 149
Query: 167 PIFKQYSLPPNEVGYPGGIFNPLNFAPTD--EAKEKELANGNNSAKLAYF 214
PIFK +P E+GYPGGIF+PL F+ + E + KE+ NG A +AY
Sbjct: 150 PIFKGNKVPNPEMGYPGGIFDPLGFSKGNLKELQTKEIKNG-RLAMVAYM 198
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 107/179 (59%), Gaps = 19/179 (10%)
Query: 40 SSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
SS+ + V + E W PG+ASP YL+G+L GD GFDP+GL +PE L WY QAEL N+
Sbjct: 23 SSARAGNVVVRAERSLWAPGVASPKYLDGNLAGDYGFDPMGLGANPERLTWYRQAELQNA 82
Query: 97 RWAMLGVVGMLLPEVFTKIGIINAPQ-WYDAGKAEYFAS-------SSTLFVIEFILFHY 148
RWAMLGV G+L E IIN Q WY AG E S + EF+L H+
Sbjct: 83 RWAMLGVAGILGQE------IINPEQWWYSAGMPENLPSFDGNKVNMGGILAWEFLLMHF 136
Query: 149 VEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD--EAKEKELANG 205
VE+RRWQDI+ SVN DP +P E+GYPGG F+PL F+ + E + KE+ NG
Sbjct: 137 VEVRRWQDIRKKDSVNADPFNPNLKVPNPEMGYPGGPFDPLGFSKGNFKEVQTKEIKNG 195
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 112/176 (63%), Gaps = 11/176 (6%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+ WLPGL P YL+G+L GD GFDPLGL EDPE+LKWYVQAELV+SR+AMLGV G+L
Sbjct: 46 RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105
Query: 110 EVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 168
++ GI N P WY+AG ++ FA + TL V++F+L + E +R+ D +PGS ++
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFACTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165
Query: 169 F---KQYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANGNNS--AKLAYF 214
F + +L E GYPGG + NPL A + K KE+ NG + A L +F
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFF 221
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 106/170 (62%), Gaps = 14/170 (8%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG+ +P YL G L GD G+DPLGL DP LKWY Q+EL ++RWAMLGV G+L+ E+
Sbjct: 23 WAPGVVAPEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEI- 81
Query: 113 TKIGIINAPQWYDAGKAEYFASSST------LFVIEFILFHYVEIRRWQDIKNPGSVNQD 166
+ +Y+AG + T L EFIL H+VE+RRWQD KN GSVN+D
Sbjct: 82 ----VKPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFILMHWVEVRRWQDYKNFGSVNED 137
Query: 167 PIFKQYSLPPNEVGYPGGIFNPLNFAPTD--EAKEKELANGNNSAKLAYF 214
PIFK +P E+GYPGGIF+P F+ D E + KE+ NG A +AY
Sbjct: 138 PIFKGNKVPNPEMGYPGGIFDPFGFSKGDFKELQTKEIKNG-RLAMIAYM 186
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 112/176 (63%), Gaps = 11/176 (6%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+ WLPGL P YL+G L GD GFDPLGL EDPE+L+WYVQAELV+SR+AMLGV G+L
Sbjct: 46 RATWLPGLDPPPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFT 105
Query: 110 EVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 168
++ GI N P WY+AG ++ FAS+ TL V++F+L + E +R+ D +PGS ++
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYVDYVSPGSQAKEGS 165
Query: 169 F---KQYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANGNNS--AKLAYF 214
F + +L E GYPGG + NPL A + K KE+ NG + A L +F
Sbjct: 166 FFFGIEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMMAMLGFF 221
>gi|145079172|tpg|DAA05902.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca7 [Acetabularia acetabulum]
Length = 214
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 110/193 (56%), Gaps = 20/193 (10%)
Query: 31 NREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQ 90
N + PV+ + V WLPG+ P +LN +LP D GFDPLGL +PE LKWYVQ
Sbjct: 16 NSTRRMSPVTQATEQPV-----WLPGVNVPQHLNRNLPADYGFDPLGLGSEPEALKWYVQ 70
Query: 91 AELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAE-----YFASSSTLFVIEFIL 145
AELV+ R+AMLGV G+L+P + TK+GI+N PQWY+AGK + + TL + +
Sbjct: 71 AELVHCRFAMLGVAGILIPGLLTKVGILNVPQWYEAGKVAIESQPFGLNFQTLLGFQLFM 130
Query: 146 FHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV---------GYPGGIFNPLNFAPTDE 196
+ E +RW + KNPGS + + + P +V YPGG+FNP+ D
Sbjct: 131 MTWAETKRWVEFKNPGSQSNPDSYPGAEMLPGKVFALGGSGDPNYPGGLFNPMGMG-DDS 189
Query: 197 AKEKELANGNNSA 209
K KE+ANG +
Sbjct: 190 MKVKEIANGRTAC 202
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 113/175 (64%), Gaps = 10/175 (5%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+ WLPGL P YL+G+LPGD GFDPLGL E+P +LKWYVQAELV+ R+AM GV G+L
Sbjct: 52 RATWLPGLDPPPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILGT 111
Query: 110 EVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 168
++ GI N P W++AG ++ FA+++ LF ++ +L +VE +R+ DI NPGS ++
Sbjct: 112 DLIRVSGISNLPVWFEAGATKFDFANTTALFFVQLLLMGFVETKRYMDIVNPGSQAEEGT 171
Query: 169 FK--QYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANGNNS--AKLAYF 214
F + SL + GYPGG +FNP+ A E K KE+ NG + A L +F
Sbjct: 172 FLGIEASLEGLQPGYPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAMVAMLGFF 226
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+G +L AS L PG F+P+GLA+D +N E+ N R AM+ ++G +
Sbjct: 169 EGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAMVAMLGFFVQ 228
Query: 110 EVFTKIGIIN 119
T +G I+
Sbjct: 229 ASVTHVGPID 238
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 119/195 (61%), Gaps = 15/195 (7%)
Query: 26 SSGKLNREVALKPVS----SSASFKV----EAKGEWLPGLASPTYLNGSLPGDNGFDPLG 77
S+G R ++P S + AS +V A+ + PG P +L+G++PGD GFDPLG
Sbjct: 10 SAGLTQRSRTVRPRSVASKARASVRVGAVAAARPNFFPGTTPPKHLDGTMPGDYGFDPLG 69
Query: 78 LAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA-PQWYDAGKAE-YFASS 135
L ED L+WY QAEL ++RWAMLGV GM PE+ + A P W +A + Y AS
Sbjct: 70 LGEDKVALEWYKQAELQHARWAMLGVTGMAAPELIQNPFVEGAMPNWAEAPLWDGYMASP 129
Query: 136 STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN-EVGYPGGIFNPLNFAPT 194
+TLFV++ + ++ E+RRWQD+KNPG++N+DP+ N +VGYP G+F+P+ A
Sbjct: 130 NTLFVVQMFMMNWAEVRRWQDMKNPGTMNEDPLTGANKGDTNTDVGYPKGLFDPMGMAKD 189
Query: 195 DEA----KEKELANG 205
E K KE+ANG
Sbjct: 190 PEKVKVLKVKEIANG 204
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 55 PGLASPTYLNGSLPGDNG---------FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
PG + L G+ GD FDP+G+A+DPE +K E+ N R AM+ V+G
Sbjct: 154 PGTMNEDPLTGANKGDTNTDVGYPKGLFDPMGMAKDPEKVKVLKVKEIANGRLAMVAVMG 213
Query: 106 MLLPEVFTKIGII 118
++ T +G I
Sbjct: 214 CIIQNEATGVGPI 226
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 101/159 (63%), Gaps = 7/159 (4%)
Query: 62 YLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAP 121
+L+GSLPGD GFDP GL DP+ LKW+ QAEL++SRWAML V G+++PE ++G I
Sbjct: 78 WLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENF 137
Query: 122 QWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGY 181
WYDAG EYFA S+TLFV + +L + E RRW D+ PGSV+ +P + P + GY
Sbjct: 138 SWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDAGY 197
Query: 182 PGGI-FNPLNFA-----PTDEAKEKELANGNNSAKLAYF 214
PGG+ F+ + + P + KE+ NG A LA+
Sbjct: 198 PGGLWFDFMMWGRGSPEPVMVLRTKEIKNG-RLAMLAFL 235
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 106/170 (62%), Gaps = 14/170 (8%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG+ +P YL G L GD G+DPLGL DP LKWY Q+EL ++RWAMLGV G+L+ E+
Sbjct: 35 WAPGVVAPEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEI- 93
Query: 113 TKIGIINAPQWYDAGKAEYFASSST------LFVIEFILFHYVEIRRWQDIKNPGSVNQD 166
+ +Y+AG + T L EFIL H+VE+RRWQD KN GSVN+D
Sbjct: 94 ----VKPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFILMHWVEVRRWQDYKNFGSVNED 149
Query: 167 PIFKQYSLPPNEVGYPGGIFNPLNFAPTD--EAKEKELANGNNSAKLAYF 214
PIFK +P E+GYPGGIF+P F+ + E + KE+ NG A +AY
Sbjct: 150 PIFKGNKVPNPEMGYPGGIFDPFGFSKGNLKELQTKEIKNG-RLAMIAYM 198
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 97/160 (60%), Gaps = 6/160 (3%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPGD GFDPLGL DPE L+W+ QAEL++SRWAML V G+L+PEV
Sbjct: 62 WFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEVL 121
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
K G + W DAG +YFA TLFV + L + E RRW D NPG V +P
Sbjct: 122 EKWGFMEDYSWIDAGARDYFADPWTLFVSQMALMGWAEGRRWADYLNPGCVAVEPRLPNR 181
Query: 173 SLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGN 206
P +VGYPGG+ F+ N+ P + KE+ NG
Sbjct: 182 RNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGR 221
>gi|125605837|gb|EAZ44873.1| hypothetical protein OsJ_29513 [Oryza sativa Japonica Group]
Length = 241
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 87/134 (64%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPGD GFDPLGL DPE L+W+ QAEL++SRWAML V G+L+PEV
Sbjct: 27 WFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEVL 86
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
K G + W DAG +YFA TLFV + L + E RRW D NPG V +P
Sbjct: 87 EKWGFMEDYSWIDAGARDYFADPWTLFVSQMALMGWAEGRRWADYLNPGCVAVEPRLPNR 146
Query: 173 SLPPNEVGYPGGIF 186
P +VGYPGG++
Sbjct: 147 RNPVPDVGYPGGLW 160
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 106/165 (64%), Gaps = 8/165 (4%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+ WLPGL P YL+G+LPGD GFDPLGL E+PE LKWYVQAELV+ R+AM GV G+L
Sbjct: 62 RATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFT 121
Query: 110 EVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 168
++ G + P W++AG A++ FA+++ LF ++ L + E +R+ D KNPGS ++
Sbjct: 122 DLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEGT 181
Query: 169 F--KQYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANGN 206
F + +L + GYPGG +FNPL A + K KE+ NG
Sbjct: 182 FIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGR 226
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 106/162 (65%), Gaps = 8/162 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
WLPGL P +L+G+LPGD GFDPLGL EDP +LKWYVQAELV+ R+AM GV G+L ++
Sbjct: 62 WLPGLDPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVAGILFTDLL 121
Query: 113 TKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF-- 169
G + P W++AG A++ FA+++ LF ++ +L + E +R+ D KNPGS ++ F
Sbjct: 122 RVSGNSDLPVWFEAGAAKFEFANTTALFFVQLLLMGFAETKRYMDFKNPGSQAEEGTFIG 181
Query: 170 KQYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANGN 206
+ +L + GYPGG +FNPL A E K KE+ NG
Sbjct: 182 LEAALAGQQPGYPGGPLFNPLGLAKDIENAHEEKLKEIKNGR 223
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG F+PLGLA+D EN E+ N R AM+ ++G ++ T G I+
Sbjct: 194 PGGPLFNPLGLAKDIENAHEEKLKEIKNGRLAMVAMLGFMVQASVTHAGPID 245
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 106/165 (64%), Gaps = 8/165 (4%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+ WLPGL P YL+G+LPGD GFDPLGL E+PE LKWYVQAELV+ R+AM GV G+L
Sbjct: 62 RATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFT 121
Query: 110 EVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 168
++ G + P W++AG A++ FA+++ LF ++ L + E +R+ D KNPGS ++
Sbjct: 122 DLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEGT 181
Query: 169 F--KQYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANGN 206
F + +L + GYPGG +FNPL A + K KE+ NG
Sbjct: 182 FIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGR 226
>gi|303324979|pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 85/123 (69%), Gaps = 1/123 (0%)
Query: 81 DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFV 140
DPE+L+W VQAELV+SRWAMLG G+ +PE TK+GI+N P WY AG+ EYF ++TLF+
Sbjct: 2 DPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFI 61
Query: 141 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEAKE 199
+E + + E RRW DI NPG VN DPIF L +VGYPGG+ F+PL + K
Sbjct: 62 VELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKL 121
Query: 200 KEL 202
KEL
Sbjct: 122 KEL 124
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG P+ LK E+ N R AML V+G ++T G I+
Sbjct: 103 PGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 162
Query: 125 DAGKAEYFAS 134
D G A FA+
Sbjct: 163 DPGHATIFAA 172
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 106/165 (64%), Gaps = 8/165 (4%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+ WLPGL P YL+G+LPGD GFDPLGL E+PE LKWYVQAELV+ R+AM GV G+L
Sbjct: 108 RATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFT 167
Query: 110 EVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 168
++ G + P W++AG A++ FA+++ LF ++ L + E +R+ D KNPGS ++
Sbjct: 168 DLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEGT 227
Query: 169 F--KQYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANGN 206
F + +L + GYPGG +FNPL A + K KE+ NG
Sbjct: 228 FIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGR 272
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 107/162 (66%), Gaps = 8/162 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
WLPG P +L+G+L GD GFDPLGL +DP++L+WYVQAELV+SR+AM GV G+L ++
Sbjct: 5 WLPGTTPPAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILFTDLL 64
Query: 113 TKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGS-VNQDPIFK 170
G + P W++AG ++ FA ++TLFV++ IL +VE +RW DI PGS +D F
Sbjct: 65 RASGRTDIPVWFEAGATKFDFADTTTLFVVQLILMGFVETKRWMDIVKPGSQAAEDSFFG 124
Query: 171 -QYSLPPNEVGYPGG-IFNPLNFA--PT--DEAKEKELANGN 206
+ + E GYPGG +FNPL FA PT + KE+ NG
Sbjct: 125 FEAAFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNGR 166
Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 63 LNGSLPGDNGFDPLGLAED---PENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L PG F+PLG A D P+ L+W E+ N R AM+ +VG ++ TK G I
Sbjct: 132 LETGYPGGPLFNPLGFANDPTKPQPLRW---KEIKNGRLAMVAMVGFMVQAYVTKTGPI 187
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPGD GFDPLGL DPE L+W+ QAEL++SRWAML G+L+PEV
Sbjct: 62 WFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAAAGILVPEVL 121
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
K G + W DAG +YFA TLFV + L + E RRW D NPG V +P
Sbjct: 122 EKWGFMEDYSWIDAGARDYFADPWTLFVSQMALMGWAEGRRWADYLNPGCVAVEPRLPNR 181
Query: 173 SLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGN 206
P +VGYPGG+ F+ N+ P + KE+ NG
Sbjct: 182 RNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGR 221
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 30 LNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
L A P + + WLPGL P +L+G+L GD GFDPLGLAEDP +L+WYV
Sbjct: 34 LGDGAAATPRYRQTCVGAQQRPTWLPGLDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYV 93
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHY 148
QAELV+ R+AMLGV G+L+ ++ GI P W++AG +Y FA++ TLF+++ +L +
Sbjct: 94 QAELVHCRFAMLGVFGILVTDLLRVTGISKIPVWFEAGAVKYDFANTKTLFLVQLVLMGF 153
Query: 149 VEIRRWQDIKNPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKE 201
VE +R+ D +PGS ++ F + SL E GYPGG + NPL A + K KE
Sbjct: 154 VETKRYMDFVSPGSQAKEGSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKE 213
Query: 202 LANGN 206
+ NG
Sbjct: 214 IKNGR 218
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 108/196 (55%), Gaps = 11/196 (5%)
Query: 16 CASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDP 75
C SR + GS + +PV + + E + WLPG +P +L+GSLPGD GFDP
Sbjct: 7 CNGLSRPILGSPLAARQVSRARPVRQTV-VRAE-RALWLPGGDAPAHLDGSLPGDFGFDP 64
Query: 76 LGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL-----PEVFTKIGIINAPQWYDAGKAE 130
LGL DPE L W+ ++E V++RWAML V G+ + P+VF + +P + A
Sbjct: 65 LGLGADPERLAWFAESERVHARWAMLAVAGIAVQEVVRPDVFWYEAALKSPMPFGNSPAA 124
Query: 131 YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLN 190
L E H+VE+RR D KNPGS +QDPIF LP +EVGYPGGIF P+
Sbjct: 125 ILG----LVAFELFAMHFVEVRRAYDFKNPGSQDQDPIFSNNKLPKHEVGYPGGIFAPVI 180
Query: 191 FAPTDEAKEKELANGN 206
E K KE+ NG
Sbjct: 181 PGDLAELKLKEIKNGR 196
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 107/174 (61%), Gaps = 10/174 (5%)
Query: 41 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
S+ S G WLPG +P YL LPG GFDPL L EDP +LKWYVQ+ELV+SR+AM
Sbjct: 26 SNGSRVCMKAGNWLPGSKTPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAM 84
Query: 101 LGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASS---STLFVIEFILFHYVEIRRWQDI 157
V G+L+PEV G +N P WY+AGK +S +TL +E F++VEI+RWQD
Sbjct: 85 AAVAGILIPEVLKAFGAVNLPVWYEAGKYAQESSPIPFNTLIALEIFAFNFVEIKRWQDF 144
Query: 158 KNPGSVNQDPIF---KQYSLPPNEVGYPGGIFNPLNFA--PTDEA-KEKELANG 205
K PGS ++ F + + E GYPGG+F+PL + P EA K +E+ NG
Sbjct: 145 KKPGSQGEEGSFVGLEGFFKGTGENGYPGGVFDPLGLSKGPGYEAMKLREIKNG 198
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 99/161 (61%), Gaps = 7/161 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPGD GFDPLGL +PE L+W+ QAEL++ RWAML G+L+P++
Sbjct: 68 WFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLL 127
Query: 113 TKIGIINAP-QWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
+ G I+A W+DAG EYFA TLFV + L + E RRW D PG V+ +P F
Sbjct: 128 ARWGFIDAGFSWFDAGSREYFADPWTLFVSQMALMGWAEGRRWADYLRPGCVDIEPRFPN 187
Query: 172 YSLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGN 206
P +VGYPGG+ F+ N+ P + KE+ NG
Sbjct: 188 RKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGR 228
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 99/161 (61%), Gaps = 7/161 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPGD GFDPLGL +PE L+W+ QAEL++ RWAML G+L+P++
Sbjct: 68 WFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLL 127
Query: 113 TKIGIINAP-QWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
+ G I+A W+DAG EYFA TLFV + L + E RRW D PG V+ +P F
Sbjct: 128 ARWGFIDAGFSWFDAGSREYFADPWTLFVSQMALMGWAEGRRWADYLRPGCVDIEPRFPN 187
Query: 172 YSLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGN 206
P +VGYPGG+ F+ N+ P + KE+ NG
Sbjct: 188 RRNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGR 228
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 7/181 (3%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQA 91
R V+ S + A+ + PG P +L+G++ GD GFDPLGL ED L+WY QA
Sbjct: 24 RLVSRSTRSGLFAVSAAARPNFFPGSTPPKHLDGTMAGDYGFDPLGLGEDKVALQWYQQA 83
Query: 92 ELVNSRWAMLGVVGMLLPEVFTKIGIIN-APQWYDAGKAE-YFASSSTLFVIEFILFHYV 149
ELV++RWAMLGV GM PE+ + P W +A + Y A ++TLFV++ ++
Sbjct: 84 ELVHARWAMLGVAGMAAPELVGNPFVDGPLPNWAEAPFFDGYIADANTLFVVQMFFMNWA 143
Query: 150 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYP-GGIFNPLNFAPT--DEA--KEKELAN 204
E+RRWQD+KNPGSV+ DP + ++VGYP GG+FNP+ A + DE + KE+AN
Sbjct: 144 EVRRWQDMKNPGSVHADPYDENRKCTGSDVGYPGGGLFNPMGMAKSVADEKALRAKEIAN 203
Query: 205 G 205
G
Sbjct: 204 G 204
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 99/161 (61%), Gaps = 7/161 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG + P +L+GSLPGD GFDPLGL +PE L+W+ QAEL++ RWAML G+L+P++
Sbjct: 29 WFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLL 88
Query: 113 TKIGIINAP-QWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
+ G I+A W+DAG EYFA TLFV + L + E RRW D PG V+ +P F
Sbjct: 89 ARWGFIDAGFSWFDAGSREYFADPWTLFVSQMALMGWAEGRRWADYLRPGCVDIEPRFPN 148
Query: 172 YSLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGN 206
P +VGYPGG+ F+ N+ P + KE+ NG
Sbjct: 149 RKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGR 189
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 108/177 (61%), Gaps = 8/177 (4%)
Query: 38 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSR 97
P ++ + WLPGL P YL+G+L GD GFDPLGL EDPE+L+WYVQAELV++R
Sbjct: 45 PRCRQICAAMQPRPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHAR 104
Query: 98 WAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQD 156
+AMLGV G+L+ ++ G+ P W++AG +Y F ++ TL +++ +L + E +R+ D
Sbjct: 105 FAMLGVFGILVTDLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMD 164
Query: 157 IKNPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANGN 206
PGS ++ F + S E GYPGG + NPL A E+K KE+ NG
Sbjct: 165 FIGPGSQAKEGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGR 221
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 108/168 (64%), Gaps = 8/168 (4%)
Query: 47 VEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGM 106
++ + WLPGL P YL+G+L GD GFDPLGL EDPE+L+WYVQAELV++R+AMLGV G+
Sbjct: 1 MQPRPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGI 60
Query: 107 LLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
L+ ++ G+ P W++AG +Y F ++ TL +++ +L + E +R+ D +PGS +
Sbjct: 61 LVTDLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAK 120
Query: 166 DPIF--KQYSLPPNEVGYPGG-IFNPLNFAP----TDEAKEKELANGN 206
+ F + S E GYPGG + NPL A E+K KE+ NG
Sbjct: 121 EGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGR 168
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 111/181 (61%), Gaps = 11/181 (6%)
Query: 37 KPVSSSAS---FKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAEL 93
KP S+ + + + WLPGL P YL+G+L GD GFDPLGL EDP++LKWYVQAEL
Sbjct: 41 KPSSTRCTPVVVHAQQRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAEL 100
Query: 94 VNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIR 152
V++R+AM GV G+L ++ GI P WY+AG ++ FAS+ TL V++ +L + E +
Sbjct: 101 VHARFAMAGVAGILFTDLLRVTGIRKLPVWYEAGAVKFEFASTRTLIVVQLLLMGFAETK 160
Query: 153 RWQDIKNPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFAPTDEA----KEKELANG 205
R+ D +PGS ++ F + +L E GYPGG + NPL A E K KE+ NG
Sbjct: 161 RYMDFVSPGSQAKEGSFFGLESALEGLEPGYPGGPLLNPLGLARDIENAHVWKLKEIKNG 220
Query: 206 N 206
Sbjct: 221 R 221
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG +PLGLA D EN + E+ N R AM+ +VG+ + T G I+
Sbjct: 192 PGGPLLNPLGLARDIENAHVWKLKEIKNGRLAMVAMVGIFVQAAVTHAGPID 243
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 105/164 (64%), Gaps = 12/164 (7%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
WLPGL+ P +L+GSL GD GFDPL L +DPE L+WYVQAELV+SR+AM G+ G+L+ ++
Sbjct: 46 WLPGLSPPQHLDGSLAGDFGFDPLELGKDPETLRWYVQAELVHSRFAMAGIAGILVTDLL 105
Query: 113 TKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
+G + P WY+AG E+ FA + TLFV++ IL Y E RR+ D +PGS F
Sbjct: 106 RTVGGRDLPVWYEAGATEFEFADTRTLFVVQLILMGYAETRRYYDYISPGSQAAQDTFLG 165
Query: 172 Y--SLPPNEVGYPGG-IFNP------LNFAPTDEAKEKELANGN 206
+ +L + GYPGG F+P +N A T KEKEL NG
Sbjct: 166 FEDALAGLQSGYPGGPFFDPAGLGRDINNART--LKEKELKNGR 207
Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
L PG FDP GL D N + + EL N R AM+ ++G+ + FTK G I+
Sbjct: 173 LQSGYPGGPFFDPAGLGRDINNARTLKEKELKNGRLAMVAILGVFVQAFFTKTGPID 229
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 98/164 (59%), Gaps = 10/164 (6%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG P +L+GSLP D GFDPL L DP+ L W QAEL++ RWAM+GV G+L+P +
Sbjct: 2 WFPGDTPPAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALL 61
Query: 113 TKIGIINAPQWYDAGKAEYFASS---STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
TK+G +N P W++AGK SS S L ++EF+ +VE +RW DIK+PGS IF
Sbjct: 62 TKLGAMNVPVWFEAGKVANDNSSVPFSALLMVEFLAMGFVETKRWYDIKSPGSQGDGSIF 121
Query: 170 K-QYSLPPNEVGYPGG-IFNPLNFAPTDEA-----KEKELANGN 206
VGYPGG F+P F+ E + KE+ANG
Sbjct: 122 GITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGR 165
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 100/165 (60%), Gaps = 12/165 (7%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG+ P +L+G+LPGD GFDPL L + E L WY AEL N RWAMLGV G++ P
Sbjct: 36 WQPGVTPPAHLDGTLPGDFGFDPLNLGVNKEALDWYRNAELQNGRWAMLGVAGIIFPAEL 95
Query: 113 TKIGIINAPQWYDAGK----AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 168
T++G++N P W DAGK +E ++L +++F LF++VEI+RW+DIK PGS +
Sbjct: 96 TRVGLLNVPDWADAGKVYAESENAIPFASLLMVQFFLFNFVEIKRWEDIKKPGSQAEAGS 155
Query: 169 FKQYSLP---PNEVGYPGGIFNPLNFAPT-----DEAKEKELANG 205
F + GYPGG FNPL + D+ K +E+ NG
Sbjct: 156 FLGFESAFKGSGVSGYPGGPFNPLGLGNSSKESMDDFKWREIRNG 200
>gi|95116528|gb|ABF56176.1| CAB11 [Theobroma cacao]
Length = 72
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/71 (95%), Positives = 68/71 (95%)
Query: 82 PENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVI 141
P NL WYVQAELVNSRWAMLGV GMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVI
Sbjct: 2 PGNLNWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVI 61
Query: 142 EFILFHYVEIR 152
EFILFHYVEIR
Sbjct: 62 EFILFHYVEIR 72
>gi|361068929|gb|AEW08776.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152399|gb|AFG58284.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152400|gb|AFG58285.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152401|gb|AFG58286.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152402|gb|AFG58287.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152403|gb|AFG58288.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152404|gb|AFG58289.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152405|gb|AFG58290.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152406|gb|AFG58291.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152407|gb|AFG58292.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152408|gb|AFG58293.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152409|gb|AFG58294.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152410|gb|AFG58295.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152411|gb|AFG58296.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152412|gb|AFG58297.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
gi|383152413|gb|AFG58298.1| Pinus taeda anonymous locus CL1595Contig1_03 genomic sequence
Length = 69
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/69 (92%), Positives = 67/69 (97%)
Query: 122 QWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGY 181
+WYDAGK EYFASSSTLFVIEFILFHYVE+RRWQDIK PGSVNQDP+FKQYSLPPNEVGY
Sbjct: 1 KWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYSLPPNEVGY 60
Query: 182 PGGIFNPLN 190
PGGIFNPLN
Sbjct: 61 PGGIFNPLN 69
>gi|307110650|gb|EFN58886.1| hypothetical protein CHLNCDRAFT_29899 [Chlorella variabilis]
Length = 266
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 102/181 (56%), Gaps = 18/181 (9%)
Query: 41 SSASFKVEAKGEWLPGLASPTYL-NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWA 99
S + A+ WLPG P +L N LPG+ GFDPLGL +PE L W+ ++E V+ RWA
Sbjct: 28 SGVVVRAAARANWLPGNDFPAHLENSPLPGNFGFDPLGLGANPERLAWFAESERVHCRWA 87
Query: 100 MLGVVGMLL-----PEVFTKIGIINAPQWY-DAGKAEYFASSSTLFVIEFILFHYVEIRR 153
MLGV G+L+ P+VF WY A E + L E + H+VE RR
Sbjct: 88 MLGVAGILVQELVRPDVF----------WYTSAVDVELPFDITGLVAFELFVMHWVESRR 137
Query: 154 WQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAY 213
DIKNPGS++QDPIF + LP +E GYPGGIF P +E K KE+ NG A LA+
Sbjct: 138 GYDIKNPGSMDQDPIFSNFKLPSHEPGYPGGIFAPFVPGSMEELKVKEIKNG-RLAMLAF 196
Query: 214 F 214
Sbjct: 197 I 197
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 109/188 (57%), Gaps = 15/188 (7%)
Query: 34 VALKPVSSSASF-KVEAKGEWLPGLASPTYLNG----SLPGDNGFDPLGLAEDPENLKWY 88
VA + SS S A+ WLPG P +L+ +L G+ GFDPLGL +DP L WY
Sbjct: 4 VAARSASSRKSVVTCVARQSWLPGSQIPAHLDTPSAQALAGNFGFDPLGLGKDPVALAWY 63
Query: 89 VQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY---FASSSTLFVIEFIL 145
QAEL++ R AM GV G+L+P + TK G +N P+WYDAGK FA TL ++ L
Sbjct: 64 QQAELIHCRTAMTGVAGILIPGLLTKAGALNVPEWYDAGKVAIENSFAPWGTLLAVQLFL 123
Query: 146 FHYVEIRRWQDIKNPGSVNQDPIFKQY--SLP-PNEVGYPGGIFNPLNFAPTDEA----K 198
+VE++RWQDI+ PGS + F + SL +EVGYPGG F+PL + + K
Sbjct: 124 CGFVEVKRWQDIRKPGSQGEPGSFLGFESSLKGTSEVGYPGGPFDPLGLSKEADKWADWK 183
Query: 199 EKELANGN 206
KE+ NG
Sbjct: 184 LKEVKNGR 191
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 105/188 (55%), Gaps = 15/188 (7%)
Query: 34 VALKP-VSSSASFKVEAKGEWLPGLASPTYLNG----SLPGDNGFDPLGLAEDPENLKWY 88
VA +P VS A A+ WLPG P +L+ ++ G+ GFDPLGL +D E L+WY
Sbjct: 10 VAARPAVSRKAVVTCVARQSWLPGSEIPKHLDSPAALAMAGNFGFDPLGLGKDAEALRWY 69
Query: 89 VQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY---FASSSTLFVIEFIL 145
QAELV++R AM V G+L+P + TK G +N P+WYDAGK FA L ++ L
Sbjct: 70 QQAELVHARTAMTAVAGILIPGLLTKAGALNVPEWYDAGKVAIESSFAPFGALLAVQLFL 129
Query: 146 FHYVEIRRWQDIKNPGSVNQDPIFKQYSLP---PNEVGYPGGIFNPLNFAPTDEA----K 198
+VE +RWQD K PGS + F + + GYPGGIF+PL + + K
Sbjct: 130 TGFVEAKRWQDFKKPGSQAEKGSFLGFETAFAGTGDNGYPGGIFDPLGLSKDADKLADWK 189
Query: 199 EKELANGN 206
KE+ NG
Sbjct: 190 LKEIKNGR 197
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 107/188 (56%), Gaps = 15/188 (7%)
Query: 34 VALKPVSSSASF-KVEAKGEWLPGLASPTYLNG----SLPGDNGFDPLGLAEDPENLKWY 88
VA + SS S A+ WLPG P +L+ +L G+ GFDPLGL +DP L+WY
Sbjct: 10 VAARSASSRKSVVTCVARQSWLPGSQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALRWY 69
Query: 89 VQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY---FASSSTLFVIEFIL 145
QAEL++ R AM GV G+L+P + TK G +N P+WYDAGK FA +L ++ L
Sbjct: 70 QQAELIHCRTAMAGVAGILIPGLLTKAGALNVPEWYDAGKVAIENSFAPWGSLLAVQLFL 129
Query: 146 FHYVEIRRWQDIKNPGSVNQDPIFKQYSLP---PNEVGYPGGIFNPLNFAPTDEA----K 198
+VE +RWQDI+ PGS + F + +E+GYPGG F+PL + + K
Sbjct: 130 CGFVEAKRWQDIRKPGSQGEPGSFLGFEASLKGTSELGYPGGPFDPLGLSKEADKWADWK 189
Query: 199 EKELANGN 206
KE+ NG
Sbjct: 190 LKEVKNGR 197
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 100/165 (60%), Gaps = 13/165 (7%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG P +L+GSL GD GFDPL L ++P+ LKWYVQAELV+ R+AMLG G++L +
Sbjct: 33 WFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIG 92
Query: 113 TKIGIINAPQWYDAGKAEYFASS---STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
K+G + P+WYDAGK ++ TL VI+F L + E +RW D KNPGS D F
Sbjct: 93 AKVG-LGFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAETKRWYDFKNPGS-QADGSF 150
Query: 170 KQYS--LPPNEVGYPGG-IFNPLNFAPTDEA-----KEKELANGN 206
++ E GYPGG F+P+ + D A K+KE+ NG
Sbjct: 151 LGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVKNGR 195
>gi|87313173|gb|ABD37883.1| light-harvesting chlorophyll-a/b binding protein Lhca5.1
[Mesostigma viride]
Length = 195
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 91/143 (63%), Gaps = 9/143 (6%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG +P +LNGSLPGD GFDP+G P +L+W V AELV++RWAMLGV G+L E+
Sbjct: 57 WYPGTKAPEWLNGSLPGDYGFDPVGFGSSPSSLRWMVHAELVHARWAMLGVAGVLGQEL- 115
Query: 113 TKIGIINA--PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF- 169
+ + N P WY+AGK YFA + TL V+ IL +VE +R+ DI NPGS Q P F
Sbjct: 116 --VHVTNGSIPHWYEAGKVSYFADTPTLIVVMHILMGFVETKRYFDIVNPGSQAQ-PGFA 172
Query: 170 -KQYSLPPNEVGYPGGI-FNPLN 190
+ + GYPGGI F+PL
Sbjct: 173 GAERLMLGTSPGYPGGILFDPLG 195
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 100/165 (60%), Gaps = 13/165 (7%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG P +L+GSL GD GFDPL L ++P+ LKWYVQAELV+ R+AMLG G++L +
Sbjct: 33 WFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIG 92
Query: 113 TKIGIINAPQWYDAGKAEYFASS---STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
K+G + P+WYDAGK ++ TL VI+F L + E +RW D KNPGS D F
Sbjct: 93 AKVG-LGFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAETKRWYDFKNPGS-QADGSF 150
Query: 170 KQYS--LPPNEVGYPGG-IFNPLNFAPTD-----EAKEKELANGN 206
++ E GYPGG F+P+ + D E K+KE+ NG
Sbjct: 151 LGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVKNGR 195
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 100/165 (60%), Gaps = 13/165 (7%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG P +L+GSL GD GFDPL L ++P+ LKWYVQAELV+ R+AMLG G++L +
Sbjct: 33 WFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIG 92
Query: 113 TKIGIINAPQWYDAGKAEYFASS---STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
K+G + P+WYDAGK ++ TL VI+F L + E +RW D KNPGS D F
Sbjct: 93 AKVG-LGFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAETKRWYDFKNPGS-QADGSF 150
Query: 170 KQYS--LPPNEVGYPGG-IFNPLNFAPTD-----EAKEKELANGN 206
++ E GYPGG F+P+ + D E K+KE+ NG
Sbjct: 151 LGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVKNGR 195
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 115/218 (52%), Gaps = 26/218 (11%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
M+++ SA RP A + T V + V+ SA+ + W PG A
Sbjct: 7 MSSLLGSKSAVAARPAAFSGKARTA-------RVQARFVAVSAA----DRQVWFPGNAPA 55
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
+L+GSLPGD GFDPL L DP+ LKW+ QAELV+ R AM V G+L P V TK G++N
Sbjct: 56 PHLDGSLPGDFGFDPLSLGSDPQLLKWFQQAELVHGRTAMTAVAGILFPAVATKAGVVNI 115
Query: 121 PQWYDAGKA-----EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 175
PQWYDAG F ++ LF I+ IL +VE +RW D KNPGS D F +
Sbjct: 116 PQWYDAGSVWVQNNPNFPFAALLF-IQIILTGWVETKRWLDFKNPGS-QADGSFLGVTDD 173
Query: 176 PNEV--GYPGG-IFNPLNFAPTDEA-----KEKELANG 205
V GYPGG +F+P + E +E E+ NG
Sbjct: 174 FKGVANGYPGGKLFDPFGLSRGSEGQLQKYQENEIKNG 211
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 100/165 (60%), Gaps = 13/165 (7%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG +P +L+G+L GD GFDPL L ++ E L+WYVQAELV+ R+AMLG G++L +
Sbjct: 33 WFPGNPAPAHLDGTLAGDYGFDPLFLGQEKETLRWYVQAELVHGRFAMLGAAGIILTSIG 92
Query: 113 TKIGIINAPQWYDAGKAEYFASS---STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
K+G + P+WYDAGK ++ TL VI+F L + E +RW D KNPGS D F
Sbjct: 93 AKVG-LGFPEWYDAGKVVVEKNNIDFPTLIVIQFYLMGWAETKRWYDFKNPGS-QADGSF 150
Query: 170 KQYS--LPPNEVGYPGG-IFNPLNFAPTD-----EAKEKELANGN 206
++ E GYPGG F+P+ + D E K+KE+ NG
Sbjct: 151 LGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYAEYKQKEVKNGR 195
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 101/176 (57%), Gaps = 13/176 (7%)
Query: 42 SASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAML 101
S K + W PG P +L+GSL GD GFDPL L ++P+ LKWYVQAELV+ R+AML
Sbjct: 22 SVRVKAATRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAML 81
Query: 102 GVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASS---STLFVIEFILFHYVEIRRWQDIK 158
G G++L + K+G + P+WYDAGK ++ TL + + L + E +RW D K
Sbjct: 82 GAAGIILTSIGAKVG-LGFPEWYDAGKVVVEKNNIDFPTLLITQLYLMGWAETKRWYDFK 140
Query: 159 NPGSVNQDPIFKQYS--LPPNEVGYPGG-IFNPLNFAPTD-----EAKEKELANGN 206
NPGS D F ++ E GYPGG F+P+ + D E K+KE+ NG
Sbjct: 141 NPGS-QGDGSFLGFTDEFKGLENGYPGGRFFDPMGLSRGDADKYKEYKQKEIKNGR 195
>gi|116785754|gb|ABK23846.1| unknown [Picea sitchensis]
Length = 161
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 78/124 (62%), Gaps = 3/124 (2%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGF 73
A+K+ FL G + L + A P ++ + E W PG P +L+GSLP D GF
Sbjct: 37 AAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGF 96
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGL DPE LKW VQ+ELV+ RWAMLG G+ +PE+ TK+GI+N P WY AG+ EYF
Sbjct: 97 DPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFT 156
Query: 134 SSST 137
+T
Sbjct: 157 DKTT 160
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 94/184 (51%), Gaps = 23/184 (12%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
+ E + W PG +P YL G L GD GFDPLG ++P L+W VQAELV+ RWAMLG G
Sbjct: 26 RAEQRASWFPGNPAPEYLKGELAGDYGFDPLGFGDEPRRLEWMVQAELVHCRWAMLGAAG 85
Query: 106 MLLPEVFTKIGIINA------PQWYDAGKAEYFA---SSSTLFVIEFILFHYVEIRRWQD 156
+LLPE+ K G+ +A P W++AGK + S +L F+L + E +R D
Sbjct: 86 ILLPEIGNKTGMQSAAPGLAFPHWWEAGKVVAESGPWSMGSLTFTMFLLMGWAEHKRLYD 145
Query: 157 IKNPGSVNQDPIFK----------QYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKEL 202
PGS + + L E GYPGGIF+P + + K+ E+
Sbjct: 146 FVKPGSQAVGWAWAPLGLGSITGVEEPLVAKENGYPGGIFDPFQMSKNEAKYKWYKQSEV 205
Query: 203 ANGN 206
NG
Sbjct: 206 TNGR 209
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 116/229 (50%), Gaps = 37/229 (16%)
Query: 10 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPG 69
+AV R A K+ F+ R + P A ++ W S +YL+G+LPG
Sbjct: 19 SAVSRSSARKAPFVV-------RASSSPPAKQGADRQL-----WFASKQSLSYLDGTLPG 66
Query: 70 DNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NA 120
D GFDPLGL+ DPE KW E++N R+AMLG VG + PE+F K+GII A
Sbjct: 67 DYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGIIPPETA 125
Query: 121 PQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQY 172
W+ AG Y+A S TLFV L + E RR QD NPGS+ + +++
Sbjct: 126 LPWFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKF 185
Query: 173 SLPPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
+ YPGG +FNPL F T+ E K KE+ NG + A L YF
Sbjct: 186 LAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYF 234
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 115/225 (51%), Gaps = 33/225 (14%)
Query: 14 RPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGF 73
RP S SR SS + R + PV A + W S TYL+GSLPGD GF
Sbjct: 25 RPLQSPSR---KSSSFVVRAASTPPVKQGADRPL-----WFASKQSLTYLDGSLPGDYGF 76
Query: 74 DPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWY 124
DPLGL+ DPE +W E++N R+AMLG VG + PE+ K+G+I A W+
Sbjct: 77 DPLGLS-DPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKLGLIPPETALPWF 135
Query: 125 D------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPP 176
AG Y+A TLFV E L + E RR+QD NPGS+ + ++Y
Sbjct: 136 KTGVFPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSMGKQYFLGLEKYLGGS 195
Query: 177 NEVGYPGG-IFNPLNFAPTDEA----KEKELANGNNS--AKLAYF 214
+ YPGG +FNPL F +++ K KE+ NG + A L YF
Sbjct: 196 GDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240
>gi|302837618|ref|XP_002950368.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902598|gb|AAD55569.1|AF110787_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300264373|gb|EFJ48569.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 214
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 75/114 (65%), Gaps = 5/114 (4%)
Query: 49 AKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
A+ WLPGL+ P +L GSL GD+GFDPLGL +D LKWY +AE N RWAM+ V G+L
Sbjct: 27 ARPTWLPGLSPPAHLKGSLAGDSGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAVTGILG 86
Query: 109 PEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
E+ +G+ P WY+AG EY S+ L IEFI+ ++EI+R+Q K G+
Sbjct: 87 QEL---LGV--TPSWYEAGAKEYDIPSTPLTAIEFIVMGFLEIKRYQGFKTTGT 135
>gi|307110371|gb|EFN58607.1| hypothetical protein CHLNCDRAFT_50418 [Chlorella variabilis]
Length = 212
Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 87/152 (57%), Gaps = 10/152 (6%)
Query: 60 PTYLNG-SLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
P +L G L G+ GFDPL L +D LKWY QAEL N RWAMLGV G+L+ E+ K G+
Sbjct: 6 PAHLKGKDLAGNFGFDPLSLGKDEAALKWYTQAELQNGRWAMLGVAGILVQELLHKTGLG 65
Query: 119 NAPQ---WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 175
W+DAG ++A TL I F+LF + E R QD PGS DP S+
Sbjct: 66 GKAADVYWFDAGNNTFWAPKETLIAISFLLFAWAECNRAQDYFKPGSNVSDPFGN--SIK 123
Query: 176 PNEVGYPGGIFNPLNFAPTDEA--KEKELANG 205
E+GYPG F+PL+F D A K KE+ NG
Sbjct: 124 YVELGYPG--FDPLSFTKNDYAGWKLKEIKNG 153
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 106/202 (52%), Gaps = 37/202 (18%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPL 76
+SKS+F G V + V+ +AS + EW+PG P YL+GS PGD GFDPL
Sbjct: 22 SSKSKFAVG--------VPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPL 73
Query: 77 GLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFA- 133
GL E PENL+ + ++EL++ RWAML V G+L+PE + A +W G+A Y
Sbjct: 74 GLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQ 133
Query: 134 -----SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNP 188
+ T+ VIEF+ +VE +R S+ +DP K+Y PGG F+P
Sbjct: 134 PVPWGTLPTILVIEFLAIAFVEHQR--------SMEKDPEKKKY---------PGGAFDP 176
Query: 189 LNFAPTDEA----KEKELANGN 206
L ++ E K KE+ NG
Sbjct: 177 LGYSKDPEKLKEYKVKEIKNGR 198
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
FDPLG ++DPE LK Y E+ N R A+L VG +
Sbjct: 174 FDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCV 209
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 121/241 (50%), Gaps = 33/241 (13%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLN---REVALKPVSSSASFKVEAKGEWLPGL 57
+++ + ASA R F + SS K++ R A P A ++ W
Sbjct: 7 VSSSSITASAEAARQILGGRSFQSSSSRKVSFAVRAEATPPAKQGADRQL-----WFASK 61
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEV 111
S +YL+GSLPGD GFDPLGL+ DPE W E++N R+AMLG VG + PE+
Sbjct: 62 QSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPSWLAYGEIINGRYAMLGAVGAIAPEI 120
Query: 112 FTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
K G+I A W+ AG +Y+A TLFV E L + E RR+QD + PG
Sbjct: 121 LGKAGLIPPETALPWFKTGVIPPAGTYDYWADPYTLFVFELALMGFAEHRRFQDFQKPGC 180
Query: 163 VNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTDEA----KEKELANGNNS--AKLAY 213
+++ F++Y YPGG +FNPL F +++ K KE+ NG + A L Y
Sbjct: 181 LSKQYFLGFEKYFEGSGNPIYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGY 240
Query: 214 F 214
F
Sbjct: 241 F 241
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
++ G +P Y G L F+PLG +D ++LK E+ N R AML ++G + +
Sbjct: 191 KYFEGSGNPIYPGGPL-----FNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQAL 245
Query: 112 FTKIG 116
T +G
Sbjct: 246 VTGVG 250
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 98/185 (52%), Gaps = 24/185 (12%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+G+LPGD GFDPLGL+ DP W AE++N R+AMLG G
Sbjct: 62 WFASSQSLSYLDGTLPGDYGFDPLGLS-DPAGAGNFMTPNWLSYAEIINGRYAMLGAAGA 120
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+F KIGII A W+ AG Y+A TLF +E L + E RR QD
Sbjct: 121 IAPEIFGKIGIIPQETAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAEHRRAQDF 180
Query: 158 KNPGSVNQDPI--FKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNS--A 209
PGS+ + F++Y + YPGGIFNP F +++ K KE+ NG + A
Sbjct: 181 YKPGSMGKQYFLGFEKYLGGSGDPAYPGGIFNPFGFGKDEKSMRTLKIKEVKNGRLAMLA 240
Query: 210 KLAYF 214
L YF
Sbjct: 241 ILGYF 245
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 98/185 (52%), Gaps = 24/185 (12%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+G+LPGD GFDPLGL+ DP W AE++N R+AMLG G
Sbjct: 62 WFASSQSLSYLDGTLPGDYGFDPLGLS-DPAGAGNFMTPNWLSYAEIINGRYAMLGAAGA 120
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+F KIGII A W+ AG Y+A TLF +E L + E RR QD
Sbjct: 121 IAPEIFGKIGIIPQQTAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAEHRRAQDY 180
Query: 158 KNPGSVNQDPI--FKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNS--A 209
PGS+ + F++Y + YPGGIFNP F +++ K KE+ NG + A
Sbjct: 181 YKPGSMGKQYFLGFEKYLGGSGDPAYPGGIFNPFGFGKDEKSMRTLKIKEVKNGRLAMLA 240
Query: 210 KLAYF 214
L YF
Sbjct: 241 ILGYF 245
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 111/216 (51%), Gaps = 38/216 (17%)
Query: 31 NREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLK- 86
+R + S ++S K +G+ W S +YL+GSLPGD GFDPLGL DPE
Sbjct: 44 SRRTSFTVRSQASSNKPVKQGDRQLWFASDQSLSYLDGSLPGDYGFDPLGLM-DPEGPGG 102
Query: 87 -----WYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYD------AGKAEYF 132
W V E++N R+AMLG VG + PE+ K+G+I A W+ AG Y+
Sbjct: 103 FMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKLGLIPQETALPWFQTGVIPPAGTYNYW 162
Query: 133 ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV-------GYPGG- 184
A TLFV+E L + E RR QD +NPGS+ KQY L + YPGG
Sbjct: 163 ADPFTLFVLEMALMGFAEHRRLQDYRNPGSMG-----KQYFLGLEKFLGGSGNPAYPGGP 217
Query: 185 IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
+FNPL F + E K KE+ NG + A L YF
Sbjct: 218 LFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYF 253
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
++L G +P Y G L F+PLG +D +++K E+ N R AML ++G + +
Sbjct: 203 KFLGGSGNPAYPGGPL-----FNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGL 257
Query: 112 FTKIG 116
T +G
Sbjct: 258 VTGVG 262
>gi|194689644|gb|ACF78906.1| unknown [Zea mays]
Length = 156
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 100 MLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 159
MLG G+ +PE TKIG++N P WY AG+ +YF ++TLF+IE IL + E RRW DI
Sbjct: 1 MLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIK 60
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEAKEKEL 202
PGSVN DPIF L +VGYPGG+ F+PL + K KEL
Sbjct: 61 PGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKEL 104
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 101/186 (54%), Gaps = 25/186 (13%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE KW E++N R+AMLGV G
Sbjct: 58 WFASKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGVAGA 116
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K+G+I A W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 117 IAPEILGKLGLIPPETALPWFQTGVIPPAGTYSYWADPYTLFVLEMALMGFAEHRRFQDW 176
Query: 158 KNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS-- 208
PGS+ + F+++ + YPGG IFNPL F + E K KE+ NG +
Sbjct: 177 AKPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDEKSMKELKLKEVKNGRLAML 236
Query: 209 AKLAYF 214
A L +F
Sbjct: 237 AILGFF 242
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
++L G P Y PG F+PLG +D +++K E+ N R AML ++G + +
Sbjct: 192 KFLGGSGDPAY-----PGGPIFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGFFIQGL 246
Query: 112 FTKIG 116
T +G
Sbjct: 247 VTGVG 251
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 101/186 (54%), Gaps = 25/186 (13%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE KW E++N R+AMLGV G
Sbjct: 58 WFASKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGVAGA 116
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K+G+I A W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 117 IAPEILGKLGLIPPETALPWFQTGVIPPAGTYSYWADPYTLFVLEMALMGFAEHRRFQDW 176
Query: 158 KNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS-- 208
PGS+ + F+++ + YPGG IFNPL F + E K KE+ NG +
Sbjct: 177 AKPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDERSMKELKLKEVKNGRLAML 236
Query: 209 AKLAYF 214
A L +F
Sbjct: 237 AILGFF 242
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
++L G P Y PG F+PLG +D ++K E+ N R AML ++G + +
Sbjct: 192 KFLGGSGDPAY-----PGGPIFNPLGFGKDERSMKELKLKEVKNGRLAMLAILGFFIQGL 246
Query: 112 FTKIG 116
T +G
Sbjct: 247 VTGVG 251
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 100/186 (53%), Gaps = 25/186 (13%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE KW E++N R+AMLG VG
Sbjct: 57 WFASKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 115
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A TLFV E L + E RR+QD
Sbjct: 116 IAPEILGKAGLIPPETALPWFRTGVIPPAGTYSYWADPYTLFVFEMALMGFAEHRRFQDW 175
Query: 158 KNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTDEA----KEKELANGNNS-- 208
PGS+ + F++Y E YPGG +FNPL F +++ K KE+ NG +
Sbjct: 176 AKPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAML 235
Query: 209 AKLAYF 214
A L YF
Sbjct: 236 AILGYF 241
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
++L G P Y G L F+PLG +D ++LK E+ N R AML ++G + +
Sbjct: 191 KYLGGSGEPAYPGGPL-----FNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGL 245
Query: 112 FTKIG 116
T +G
Sbjct: 246 VTGVG 250
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 94/177 (53%), Gaps = 25/177 (14%)
Query: 37 KPVSSSASFKVEAKGEWLPGLA-SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVN 95
K S + E K W PGL +P +L+GSLPGD G+DPLGLA+DP +L Y +AE++N
Sbjct: 26 KKTDSRVTCMAERK-LWAPGLVKAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMN 84
Query: 96 SRWAMLGVVGMLLPEVFTKIGIINAPQW-YDAGKAEYFASS-----STLFVIEFILFHYV 149
RWAMLGV GML PE+ + ++A W GK Y + T+ +EF +V
Sbjct: 85 GRWAMLGVAGMLAPELVGQGTWLSAQDWAVTGGKPTYLGNELPYGFGTVLAVEFFCLSWV 144
Query: 150 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
EI R + +DP+ + YPGG F+PL F + K KEL NG
Sbjct: 145 EISR--------GLEKDPMKRI---------YPGGAFDPLGFGKDEVNKVKELRNGR 184
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 95/181 (52%), Gaps = 19/181 (10%)
Query: 40 SSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAEL 93
SSS K + W TYL+G+LPGD GFDPLGL+ DPE +W E+
Sbjct: 37 SSSPPAKQGDRQLWFAXXZXLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEI 95
Query: 94 VNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYDAGKA------EYFASSSTLFVIEFI 144
N R AM+GVVGM+ PE K+G++ A W+ AG +Y+A TLFV E
Sbjct: 96 FNGRTAMMGVVGMIAPEALGKVGLVPSETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMA 155
Query: 145 LFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEKE 201
L + E RR QD NPGS+ + ++Y + YPGG IFNPL F E + KE
Sbjct: 156 LIGFAEHRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKE 215
Query: 202 L 202
L
Sbjct: 216 L 216
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 119/242 (49%), Gaps = 41/242 (16%)
Query: 3 TVTTQASAAVFRPCASKSRF-LTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPT 61
T + +A+ P + +S F + + L + A+ PV + + W S +
Sbjct: 13 TFSAEATRQSLGPRSLQSPFGFSRKASFLVKAAAIPPVKQGSDRPL-----WFASKQSLS 67
Query: 62 YLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
YL+GSLPGD GFDPLGL+ DPE KW E++N R+AMLG VG + PE+ K
Sbjct: 68 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 116 GII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD 166
G+I A W+ AG Y+A S TLFV E L + E RR+QD PGS+
Sbjct: 127 GLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMG-- 184
Query: 167 PIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTDEA----KEKELANGNNS--AKLA 212
KQY L E YPGG FNPL F +++ K KE+ NG + A L
Sbjct: 185 ---KQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILG 241
Query: 213 YF 214
YF
Sbjct: 242 YF 243
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 195 LGGSGEPAY-----PGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVRALVT 249
Query: 114 KIG 116
+G
Sbjct: 250 GVG 252
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 91/168 (54%), Gaps = 19/168 (11%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S TYL+G+LPGD GFDPLGL+ DPE +W E+ N R AM+GVVGM
Sbjct: 51 WFASKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGM 109
Query: 107 LLPEVFTKIGII---NAPQWYDAGKA------EYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE K+G++ A W+ AG +Y+A TLFV E L + E RR QD
Sbjct: 110 IAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRRLQDW 169
Query: 158 KNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEKEL 202
NPGS+ + ++Y + YPGG IFNPL F E + KEL
Sbjct: 170 YNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKEL 217
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 89/190 (46%), Gaps = 49/190 (25%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGF 73
A+K+ FL G + L + A P ++ + E W PG P +L+GSLP D GF
Sbjct: 37 AAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGF 96
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGL DPE LKW VQ+ELV+ RWAMLG G+ +PE+ TK+GI+N
Sbjct: 97 DPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNT------------- 143
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA 192
DPIF L +VGYPGG+ F+PL +
Sbjct: 144 --------------------------------DPIFPNNKLTGTDVGYPGGLWFDPLGWG 171
Query: 193 PTDEAKEKEL 202
K KEL
Sbjct: 172 SGSPEKIKEL 181
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 99/186 (53%), Gaps = 25/186 (13%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE KW E++N R+AMLG VG
Sbjct: 57 WFASKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 115
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A TLFV E L + E RR QD
Sbjct: 116 IAPEILGKAGLIPPETALPWFRTGVIPPAGTYSYWADPYTLFVFEMALMGFAEHRRLQDW 175
Query: 158 KNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTDEA----KEKELANGNNS-- 208
PGS+ + F++Y E YPGG +FNPL F +++ K KE+ NG +
Sbjct: 176 AKPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAML 235
Query: 209 AKLAYF 214
A L YF
Sbjct: 236 AILGYF 241
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
++L G P Y G L F+PLG +D ++LK E+ N R AML ++G + +
Sbjct: 191 KYLGGSGEPAYPGGPL-----FNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGL 245
Query: 112 FTKIG 116
T +G
Sbjct: 246 VTGVG 250
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 96/168 (57%), Gaps = 24/168 (14%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPE------NLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
S +YL+GSLPGD GFDPLGL+ DPE N +W +E+++ RWAMLGV GM+ PEV
Sbjct: 67 SLSYLDGSLPGDYGFDPLGLS-DPEGAGGFINPQWLAYSEVIHGRWAMLGVAGMVAPEVL 125
Query: 113 TKIGIINAPQ-----WYDAGKA------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPG 161
+GII PQ WY AG +Y+A+ T+F I L ++ E+RR QD NPG
Sbjct: 126 GGLGII--PQETGLVWYKAGMIPAQGTYDYWANPFTIFWINAALMNFAELRRAQDYWNPG 183
Query: 162 SVNQDPIFKQYSL--PPNEVGYPGGIFNPLNFAPTDEAKE--KELANG 205
S+ + + + E YPGG FN + +D AK KE+ NG
Sbjct: 184 SMGKQELIGWEKMLGGSGEPAYPGGFFNIMGQGKSDMAKMRVKEIKNG 231
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 99/191 (51%), Gaps = 35/191 (18%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE KW E++N R+AMLG VG
Sbjct: 59 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 117
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A S TLFV E L + E RR+QD
Sbjct: 118 IAPEILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDW 177
Query: 158 KNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTDEA----KEKELANG 205
PGS+ KQY L E YPGG FNPL F +++ K KE+ NG
Sbjct: 178 AKPGSMG-----KQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNG 232
Query: 206 NNS--AKLAYF 214
+ A L YF
Sbjct: 233 RLAMLAILGYF 243
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 195 LGGSGEPAY-----PGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVT 249
Query: 114 KIG 116
+G
Sbjct: 250 GVG 252
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 99/191 (51%), Gaps = 35/191 (18%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE KW E++N R+AMLG VG
Sbjct: 59 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 117
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A S TLFV E L + E RR+QD
Sbjct: 118 IAPEILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDW 177
Query: 158 KNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTDEA----KEKELANG 205
PGS+ KQY L E YPGG FNPL F +++ K KE+ NG
Sbjct: 178 AKPGSMG-----KQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNG 232
Query: 206 NNS--AKLAYF 214
+ A L YF
Sbjct: 233 RLAMLAILGYF 243
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 195 LGGSGEPAY-----PGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVT 249
Query: 114 KIG 116
+G
Sbjct: 250 GVG 252
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 99/191 (51%), Gaps = 35/191 (18%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE KW E++N R+AMLG VG
Sbjct: 59 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 117
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A S TLFV E L + E RR+QD
Sbjct: 118 IAPEILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDW 177
Query: 158 KNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTDEA----KEKELANG 205
PGS+ KQY L E YPGG FNPL F +++ K KE+ NG
Sbjct: 178 AKPGSMG-----KQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNG 232
Query: 206 NNS--AKLAYF 214
+ A L YF
Sbjct: 233 RLAMLAILGYF 243
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 195 LGGSGEPAY-----PGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVT 249
Query: 114 KIG 116
+G
Sbjct: 250 GVG 252
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 99/191 (51%), Gaps = 35/191 (18%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE KW E++N R+AMLG VG
Sbjct: 59 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 117
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A S TLFV E L + E RR+QD
Sbjct: 118 IAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDW 177
Query: 158 KNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTDEA----KEKELANG 205
PGS+ KQY L E YPGG FNPL F +++ K KE+ NG
Sbjct: 178 AKPGSMG-----KQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNG 232
Query: 206 NNS--AKLAYF 214
+ A L YF
Sbjct: 233 RLAMLAILGYF 243
Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 195 LGGSGEPAY-----PGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVT 249
Query: 114 KIG 116
+G
Sbjct: 250 GVG 252
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 112/230 (48%), Gaps = 43/230 (18%)
Query: 14 RPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGF 73
+P S SR S + + + PV A+ + W S TYL+GSLPGD GF
Sbjct: 25 KPAVSTSRR---KSSFVVKATSTPPVKQGANRPL-----WFASSQSLTYLDGSLPGDYGF 76
Query: 74 DPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWY 124
DPLGL+ DPE +W E++N R+AMLG G + PE+ K G+I A W+
Sbjct: 77 DPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWF 135
Query: 125 D------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL---- 174
AG Y+A + TLFV+E L + E RR QD NPGS+ KQY L
Sbjct: 136 QTGVIPPAGTYSYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMG-----KQYFLGLEK 190
Query: 175 ---PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
E YPGG FNPL F + E K KE+ NG + A L YF
Sbjct: 191 GFSGSGEPAYPGGPFFNPLGFGKNEKSMKELKLKEIKNGRLAMLAILGYF 240
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 92/168 (54%), Gaps = 19/168 (11%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+G+LPGD GFDPLGL+ DPE +W E+ N R AM+GVVGM
Sbjct: 51 WFASKQSLSYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEVFNGRTAMMGVVGM 109
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K+G++ A W+ AG Y+A TLFV E L + E RR+QD
Sbjct: 110 VAPELLGKLGLVPAETAIPWFQTGVIPPAGTYTYWADPYTLFVFELALVGFAEHRRFQDW 169
Query: 158 KNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEKEL 202
PGS+ + ++Y E YPGG +FNPL F EA+ KEL
Sbjct: 170 YTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKEL 217
>gi|145332845|ref|NP_001078288.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645787|gb|AEE79308.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 213
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 96/181 (53%), Gaps = 29/181 (16%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
++ W+PG P YL+GS PGD GFDPLGL E P NL+ Y ++EL++ RWAML V G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEYF------ASSSTLFVIEFILFHYVEIRRWQDI 157
+L+PE + A +W G+A Y + T+ IEF+ +VE +R
Sbjct: 101 ILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR---- 156
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAY 213
S+ +DP K+ YPGG F+PL ++ +E K KE+ NG ++ +L +
Sbjct: 157 ----SMEKDPEKKK---------YPGGAFDPLGYSKDPKKLEELKVKEIKNGKHTQQLTF 203
Query: 214 F 214
Sbjct: 204 L 204
>gi|303280461|ref|XP_003059523.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459359|gb|EEH56655.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 235
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 99/172 (57%), Gaps = 12/172 (6%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-WLP-GLA 58
MA +TT + AV ++S F GS A+K VSS AS V+A+ E W+
Sbjct: 1 MAALTTTSLTAVSAVRGARSAF-AGSRAAFVAAPAMK-VSSRASLTVKAQRELWIKDSTV 58
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P +L+G+LPGD GFDPLGL DP+ LK+Y +AEL+N+RWAM+ V G+ EV +GI
Sbjct: 59 APAHLDGTLPGDFGFDPLGLGADPQRLKYYQEAELMNARWAMMAVAGITATEV---LGI- 114
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR---WQDIKNPGSVNQDP 167
P WYD G A++ L I+F + +E++R W D G V+Q P
Sbjct: 115 -GPAWYDVGAADFDFPPLALLAIQFPVMGILELKRIRGWLDTGKSGVVDQFP 165
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 87/172 (50%), Gaps = 25/172 (14%)
Query: 48 EAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
E + W PG +P +L G PGD GFDPLGLA+DPE+ +E+ + RWAMLG+VG L
Sbjct: 358 EKRPTWFPGAEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLVGCL 417
Query: 108 LPEVFTKIGIINAPQWYDAGKA------EYFASSS--------TLFVIEFILFHYVEIRR 153
+PEVF +GI P WY+AG +Y + + +F +LF +E R
Sbjct: 418 VPEVFGNLGIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEAWR 477
Query: 154 WQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
W P + + + YPGG F+PL + E K KE+ NG
Sbjct: 478 WNGQIAPEAKSAE-----------RTTYPGGPFDPLKLGASPELKLKEIKNG 518
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 87/172 (50%), Gaps = 25/172 (14%)
Query: 48 EAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
E + W PG +PT+L G PGD GFDP GLA+DP + + +E+ + RWAMLG+VG L
Sbjct: 149 EKRPTWFPGAEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLVGCL 208
Query: 108 LPEVFTKIGIINAPQWYDA------------GKAEYFASSSTLFVI--EFILFHYVEIRR 153
+PEVF +GI P WYDA G +S+ F+ +L VE R
Sbjct: 209 VPEVFGNLGIAQLPAWYDAATVANTSNLDYLGNPNLVHASNVSFIALSTLLLMGPVEAWR 268
Query: 154 WQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
W G++ + + + YPGG F+PL + E K KE+ NG
Sbjct: 269 WN-----GALASEAKSAERTT------YPGGPFDPLKLGASPELKLKEIKNG 309
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 25/111 (22%)
Query: 109 PEVFTKIGIINAPQWYDAGKA------EYFASSST--------LFVIEFILFHYVEIRRW 154
PEVF +GI P WY+AG +Y + + +F +LF +E RW
Sbjct: 1 PEVFGNLGIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEAWRW 60
Query: 155 QDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
G + D K+++ YPGG F+PL + E K KE+ NG
Sbjct: 61 N-----GQIAPDAKSKEWTT------YPGGPFDPLKLGASPELKLKEIKNG 100
>gi|449446427|ref|XP_004140973.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
gi|449497079|ref|XP_004160305.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
Length = 255
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 107/209 (51%), Gaps = 25/209 (11%)
Query: 2 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG----- 56
V T + R + L G+ G +N + K V +A+ + K WLPG
Sbjct: 6 GAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAA---QPKKSWLPGVRGGG 62
Query: 57 -LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM VVG+ + + ++ I
Sbjct: 63 NLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 122
Query: 116 GIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------ 166
W++AG A S +L + +L +VE +RW D NP S + +
Sbjct: 123 ------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 176
Query: 167 PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
+ ++ E GYPGG F+PL FA T
Sbjct: 177 RTAENFANATGEQGYPGGKFFDPLGFAGT 205
>gi|159468772|ref|XP_001692548.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278261|gb|EDP04026.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 213
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 73/114 (64%), Gaps = 5/114 (4%)
Query: 49 AKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
A+ WLPGL P +L G+L GDNGFDPLGL +D LKWY +AE N RWAM+ V G+L
Sbjct: 27 ARPTWLPGLNPPAHLKGALAGDNGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAVAGILG 86
Query: 109 PEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
E+ +G+ P W++AG EY + L IEFI+ ++EI+R+Q K G+
Sbjct: 87 QEL---LGVT--PAWWEAGAKEYDIPAQALTPIEFIVMGFLEIKRYQGFKQTGT 135
>gi|351728089|ref|NP_001236415.1| uncharacterized protein LOC100527463 [Glycine max]
gi|255632410|gb|ACU16555.1| unknown [Glycine max]
Length = 259
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 18 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG------LASPTYLNGSLPGDN 71
S++ T GK+ V + P K WLPG L P +L+GSLPGD
Sbjct: 24 SQTLLATAIGGKVGAAVTVNPRRLIVVAAAAPKKSWLPGVRGGGNLVDPEWLDGSLPGDY 83
Query: 72 GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAG---K 128
GFDPLGL +DP LKWY +AEL++ RWAM V+G+ + + ++ + W++AG
Sbjct: 84 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGV------PWFEAGADPN 137
Query: 129 AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYP 182
A S TL + IL +VE +RW D NP S + + + ++ E GYP
Sbjct: 138 AIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANASGEHGYP 197
Query: 183 GG-IFNPLNFAPT 194
GG F+PL+FA T
Sbjct: 198 GGKFFDPLSFAGT 210
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 99/191 (51%), Gaps = 35/191 (18%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE +W E++N R+AMLG G
Sbjct: 60 WFASKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 118
Query: 107 LLPEVFTKIGIINAPQ---WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A + TLFV+E + E RR+QD
Sbjct: 119 IAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDW 178
Query: 158 KNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANG 205
NPGS+ KQY L E YPGG IFNPL F + E K KE+ NG
Sbjct: 179 YNPGSMG-----KQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNG 233
Query: 206 NNS--AKLAYF 214
+ A L YF
Sbjct: 234 RLAMLAILGYF 244
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 196 LGGSGEPAY-----PGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVT 250
Query: 114 KIG 116
+G
Sbjct: 251 GVG 253
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 106/221 (47%), Gaps = 40/221 (18%)
Query: 1 MATVTTQA---SAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGL 57
MA T SA A +++F +G L+ + S +V EW+PG
Sbjct: 1 MAAATMACVGLSAPALLSGAQRTKFFSGHVSSLS--------TVSNGSRVSMSSEWMPGQ 52
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
P YL+GS PGD GFDPLGLAE PEN Y ++EL++ RWAML V G+L+PE
Sbjct: 53 PRPAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPGVLIPEALGLGNW 112
Query: 118 INAPQW--YDAGKAEYFA------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
++A QW G+A Y + + IEF+ +VE +R ++P
Sbjct: 113 VSAQQWAATPGGQATYLGNPVPWGTLPIILAIEFLAVAFVEAKR----------GEEPDH 162
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
++ YPGG F+PL FA +E K KEL NG
Sbjct: 163 EKRK-------YPGGPFDPLGFAKDPKKLEEYKLKELKNGR 196
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
FDPLG A+DP+ L+ Y EL N R A+L +G
Sbjct: 172 FDPLGFAKDPKKLEEYKLKELKNGRLALLAFLG 204
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 107/212 (50%), Gaps = 40/212 (18%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------ 85
R + PV A+ ++ W S +YL+GSLPGD GFDPLGL+ DPE
Sbjct: 40 RAASTPPVKQGANRQL-----WFASKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEP 93
Query: 86 KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSS 136
KW E++N R+AMLG G + PE+ K G+I A W+ AG Y+A +
Sbjct: 94 KWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNY 153
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNP 188
TLFV+E L + E RR+QD PGS+ KQY L + YPGG +FNP
Sbjct: 154 TLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGLGGSGDPAYPGGPLFNP 208
Query: 189 LNFAPTD----EAKEKELANGNNS--AKLAYF 214
L F + E K KE+ NG + A L YF
Sbjct: 209 LGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y PG F+PLG +D +++K E+ N R AML ++G + + T
Sbjct: 192 LGGSGDPAY-----PGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVT 246
Query: 114 KIG 116
+G
Sbjct: 247 GVG 249
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 104/199 (52%), Gaps = 25/199 (12%)
Query: 40 SSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPEN------LKWYVQAEL 93
SS K + W S +YL+GSLPGD GFDPLGL DPE W E+
Sbjct: 58 SSGKPVKQGDRQLWFASKQSLSYLDGSLPGDYGFDPLGLM-DPEGPGGFIEPGWLAYGEI 116
Query: 94 VNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFI 144
+N R+AMLG VG + PE+ K+G+I A W+ AG +Y+A TLFV+E
Sbjct: 117 INGRYAMLGAVGAIAPEILGKLGLIPQETALPWFRTGVIPPAGTYDYWADPFTLFVLEMA 176
Query: 145 LFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTD----EA 197
L + E RR QD + PGS+++ F++Y YPGG +FNPL F + E
Sbjct: 177 LMGFAEHRRLQDYRYPGSMSKQYFLGFEKYLGGSGNPSYPGGPLFNPLGFGKDEKSMKEL 236
Query: 198 KEKELANGNNS--AKLAYF 214
K KE+ NG + A + YF
Sbjct: 237 KLKEVKNGRLAMLAIVGYF 255
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
++L G +P+Y G L F+PLG +D +++K E+ N R AML +VG + +
Sbjct: 205 KYLGGSGNPSYPGGPL-----FNPLGFGKDEKSMKELKLKEVKNGRLAMLAIVGYFIQGL 259
Query: 112 FTKIG 116
T +G
Sbjct: 260 VTGVG 264
>gi|19421770|gb|AAL87738.1|AF244524_1 chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 222
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 73/114 (64%), Gaps = 5/114 (4%)
Query: 49 AKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
A+ WLPGL P +L G+L GDNGFDPLGL +D LKWY +AE N RWAM+ V G+L
Sbjct: 27 ARPTWLPGLNPPAHLKGALAGDNGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAVAGILG 86
Query: 109 PEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
E+ +G+ P W++AG EY + L IEFI+ ++EI+R+Q K G+
Sbjct: 87 QEL---LGVT--PAWWEAGAKEYDIPAQALTPIEFIVMGFLEIKRYQGFKQTGT 135
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 99/191 (51%), Gaps = 35/191 (18%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE +W E++N R+AMLG G
Sbjct: 60 WFASKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 118
Query: 107 LLPEVFTKIGIINAPQ---WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A + TLFV+E + E RR+QD
Sbjct: 119 IAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDW 178
Query: 158 KNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANG 205
NPGS+ KQY L E YPGG IFNPL F + E K KE+ NG
Sbjct: 179 YNPGSMG-----KQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNG 233
Query: 206 NNS--AKLAYF 214
+ A L YF
Sbjct: 234 RLAMLAILGYF 244
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 99/191 (51%), Gaps = 35/191 (18%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE + +W E++N R+AMLG G
Sbjct: 340 WFASKQSLSYLDGSLPGDFGFDPLGLS-DPEGVGGFIEPEWLAYGEIINGRFAMLGAAGA 398
Query: 107 LLPEVFTKIGIINAPQ---WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A + TLFV+E + E RR QD
Sbjct: 399 IAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRLQDW 458
Query: 158 KNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANG 205
NPGS+ KQY L E YPGG IFNPL F + E K KE+ NG
Sbjct: 459 YNPGSMG-----KQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNG 513
Query: 206 NNS--AKLAYF 214
+ A L YF
Sbjct: 514 RLAMLAILGYF 524
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 196 LGGSGEPAY-----PGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVT 250
Query: 114 KIG 116
+G
Sbjct: 251 GVG 253
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 476 LGGSGEPAY-----PGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVT 530
Query: 114 KIG 116
+G
Sbjct: 531 GVG 533
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 111/221 (50%), Gaps = 40/221 (18%)
Query: 1 MATVTTQASAAVFRPC---ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGL 57
MA+ T +SA P +SKSRF T + L ++AS + +W+PG
Sbjct: 1 MASNTLMSSAISAFPSLLSSSKSRFATAAP--------LSCFGTNASSRFSMTADWMPGQ 52
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
P YL+GS PGD GFDPL L E PENL+ + ++EL++ RWAML V G+L+PE
Sbjct: 53 PRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNW 112
Query: 118 INAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
+ A +W G+A Y + T+ IEF+ +VE +R S+ +DP
Sbjct: 113 VKAQEWAALPGGQATYLGNPVPRGTLPTVLAIEFLAISFVEHQR--------SMEKDPEK 164
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
K+ YPGG F+PL ++ E K KE+ NG
Sbjct: 165 KK---------YPGGAFDPLGYSKDPKKFHEYKVKEIKNGR 196
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 96/179 (53%), Gaps = 29/179 (16%)
Query: 40 SSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWA 99
S + + +V +WLPG P YL+GS PGD GFDPL L E PENL+ Y ++EL++ RWA
Sbjct: 35 SVNGTSRVTMSADWLPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWA 94
Query: 100 MLGVVGMLLPEVFTKIGIINAPQWYDA--GKAEYFA------SSSTLFVIEFILFHYVEI 151
ML V G+L+PE + A +W A G+A Y + T+ IEF+ +VE
Sbjct: 95 MLAVPGILIPEALGLGNWVKAQEWAAAPGGQATYLGQPVPWGTLPTVLAIEFVAIAFVEH 154
Query: 152 RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
+R S+ +DP K+Y PGG F+PL F+ +E K KE+ NG
Sbjct: 155 QR--------SMEKDPEKKKY---------PGGAFDPLGFSKDPKKFEEYKVKEIKNGR 196
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 99/191 (51%), Gaps = 35/191 (18%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE +W E++N R+AMLG G
Sbjct: 60 WFASKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 118
Query: 107 LLPEVFTKIGIINAPQ---WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A + TLFV+E + E RR+QD
Sbjct: 119 IAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDW 178
Query: 158 KNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANG 205
NPGS+ KQY L E YPGG IFNPL F + E K KE+ NG
Sbjct: 179 YNPGSMG-----KQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNG 233
Query: 206 NNS--AKLAYF 214
+ A L YF
Sbjct: 234 RLAMLAILGYF 244
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 99/191 (51%), Gaps = 35/191 (18%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE + +W E++N R+AMLG G
Sbjct: 356 WFASKQSLSYLDGSLPGDFGFDPLGLS-DPEGVGGFIEPEWLAYGEIINGRFAMLGAAGA 414
Query: 107 LLPEVFTKIGIINAPQ---WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A + TLFV+E + E RR QD
Sbjct: 415 IAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRLQDW 474
Query: 158 KNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANG 205
NPGS+ KQY L E YPGG IFNPL F + E K KE+ NG
Sbjct: 475 YNPGSMG-----KQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNG 529
Query: 206 NNS--AKLAYF 214
+ A L YF
Sbjct: 530 RLAMLAILGYF 540
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 196 LGGSGEPAY-----PGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVT 250
Query: 114 KIG 116
+G
Sbjct: 251 GVG 253
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 492 LGGSGEPAY-----PGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVT 546
Query: 114 KIG 116
+G
Sbjct: 547 GVG 549
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 99/185 (53%), Gaps = 31/185 (16%)
Query: 34 VALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAEL 93
V + VS ++ F + A EW+PG P YL+GS PGD GFDPLGL E P NL+ Y ++EL
Sbjct: 32 VCVGAVSGNSRFSMSA--EWMPGQPRPPYLDGSAPGDFGFDPLGLGEVPSNLERYKESEL 89
Query: 94 VNSRWAMLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFA------SSSTLFVIEFIL 145
++ RWAML V G+L+PE + A +W G+A Y + T+ IEF+
Sbjct: 90 IHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLA 149
Query: 146 FHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKE 201
+VE +R S+ +DP K+Y PGG F+PL ++ +E K KE
Sbjct: 150 IAFVEHQR--------SMEKDPEKKKY---------PGGAFDPLGYSKDPKKFEELKVKE 192
Query: 202 LANGN 206
+ NG
Sbjct: 193 IKNGR 197
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 111/221 (50%), Gaps = 40/221 (18%)
Query: 1 MATVTTQASAAVFRPC---ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGL 57
MA+ T +SA P +SKSRF T + L ++AS + +W+PG
Sbjct: 1 MASNTLMSSAISAFPSLLSSSKSRFATAAP--------LSCFGTNASSRFSMTADWMPGQ 52
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
P YL+GS PGD GFDPL L E PENL+ + ++EL++ RWAML V G+L+PE
Sbjct: 53 PRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNW 112
Query: 118 INAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
+ A +W G+A Y + T+ IEF+ +VE +R S+ +DP
Sbjct: 113 VKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQR--------SMEKDPEK 164
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
K+ YPGG F+PL ++ E K KE+ NG
Sbjct: 165 KK---------YPGGAFDPLGYSKDPKKFHEYKVKEIKNGR 196
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 91/168 (54%), Gaps = 19/168 (11%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S TYL+G+LPGD GF+PLGL+ DPE +W E+ N R AM+GVVGM
Sbjct: 51 WFASKQSLTYLDGTLPGDFGFNPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGM 109
Query: 107 LLPEVFTKIGII---NAPQWYDAGKA------EYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE K+G++ A W+ AG +Y+A TLFV E L + E RR QD
Sbjct: 110 IAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRRLQDW 169
Query: 158 KNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEKEL 202
NPGS+ + ++Y + YPGG IFNPL F E + KEL
Sbjct: 170 YNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKEL 217
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 112/230 (48%), Gaps = 43/230 (18%)
Query: 14 RPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGF 73
RP SR S+ + R A PV A ++ W S +YL+GSLPGD GF
Sbjct: 25 RPSFGSSR---KSASFVVRAEATPPVKQGADRQL-----WFASKQSLSYLDGSLPGDFGF 76
Query: 74 DPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWY 124
DPLGL+ DPE +W E++N R+AMLG G + PE+F +G+I A W+
Sbjct: 77 DPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWF 135
Query: 125 D------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL---- 174
AG Y+A TLFV E L + E RR+QD PGS+ KQY L
Sbjct: 136 KTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEK 190
Query: 175 ---PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
+ YPGG +FNPL F + E K KE+ NG + A L YF
Sbjct: 191 FLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
++L G P Y G L F+PLG +D +++K E+ N R AML ++G + +
Sbjct: 190 KFLGGSGDPAYPGGPL-----FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGL 244
Query: 112 FTKIG 116
T +G
Sbjct: 245 VTGVG 249
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 105/212 (49%), Gaps = 40/212 (18%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------ 85
R + PV A ++ W S TYL+GSLPGD GFDPLGL+ DPE
Sbjct: 40 RASSTPPVKQGADRQL-----WFASKQSLTYLDGSLPGDFGFDPLGLS-DPEGTGGFIEP 93
Query: 86 KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSS 136
KW E++N R+AMLG G + PE+ K G+I A W+ AG +Y+A
Sbjct: 94 KWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPPETALPWFQTGVIPPAGTYDYWADPY 153
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNP 188
TLFV E L + E RR+QD PGS+ KQY L + YPGG +FNP
Sbjct: 154 TLFVFEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKFLGGSGDPAYPGGPLFNP 208
Query: 189 LNFAPTD----EAKEKELANGNNS--AKLAYF 214
L F + E K KE+ NG + A L YF
Sbjct: 209 LGFGKDEKSMKELKLKEVKNGRLAMLAILGYF 240
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
++L G P Y G L F+PLG +D +++K E+ N R AML ++G + +
Sbjct: 190 KFLGGSGDPAYPGGPL-----FNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFVQGL 244
Query: 112 FTKIG 116
T +G
Sbjct: 245 VTGVG 249
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 110/219 (50%), Gaps = 41/219 (18%)
Query: 4 VTTQASAAVFR-----PCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA 58
+ T A+A V R A KS F GSS V+L S+ + EWLPG
Sbjct: 1 MATAAAAQVSRVVTGVATAQKSSFFAGSS-----SVSLLGCSNGSRV---CMAEWLPGNP 52
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
P+YL+GS PGD GFDPLGL E PENL+ + ++EL+++RWAML V G+L+PE +
Sbjct: 53 RPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGYGNWV 112
Query: 119 NAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
+A +W G+A Y + + IEF+ + E +R N +P
Sbjct: 113 SAQKWAATPGGQATYLGNPVPWGNLPVILAIEFLAIAFAESQR----------NGEP--- 159
Query: 171 QYSLPPNEVGYPGGIFNPLNF---APTDEAKEKELANGN 206
P + YPGG F+PL F A +E K KE+ NG
Sbjct: 160 ----DPEKRKYPGGAFDPLGFSKGANLEELKLKEIKNGR 194
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 130/248 (52%), Gaps = 40/248 (16%)
Query: 2 ATVTTQASAAVF-------RPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE-- 52
+T+ T A A+V +P ++ +FL R A S +A F V+A+
Sbjct: 21 STMATAALASVSVPAVVCGKPAFAEKKFLGARVAAAARPQA----SKAAKFVVKAEKSDR 76
Query: 53 --WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVV 104
+ A+ +YL+GS PGD G+DPLGL + PE KW +E+++ R+AMLG+
Sbjct: 77 QLFFSDKAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCRYAMLGMA 135
Query: 105 GMLLPEVFTKIGIINAPQ---WYDAG------KAEYFASSSTLFVIEFILFHYVEIRRWQ 155
GM+ PE+ K+G+I A W+ G + +Y+AS LF IE +L + E+RRWQ
Sbjct: 136 GMVAPEILGKLGLIPAETGLVWFKTGVIPSEGQYDYWASPLALFWIEVVLMQFAELRRWQ 195
Query: 156 DIKNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTDEA----KEKELANGNNS 208
D ++PGS ++ +Q+ + YPGG IFN L + +++ K KEL NG +
Sbjct: 196 DYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELKNGRLA 255
Query: 209 --AKLAYF 214
A L +F
Sbjct: 256 MVATLGFF 263
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 33/229 (14%)
Query: 14 RPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE----WLPGLASPTYLNGSLPG 69
+P ++ +FL R A S +A F V+A+ + A+ +YL+GS PG
Sbjct: 18 KPAFAEKKFLGARVAAAARPQA----SKAAKFVVKAEKSDRQLFFSDKAAQSYLDGSKPG 73
Query: 70 DNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQ- 122
D G+DPLGL + PE KW +E+++ R+AMLG+ GM+ PE+ K+G+I A
Sbjct: 74 DFGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCRYAMLGMAGMVAPEILGKLGLIPAETG 132
Query: 123 --WYDAG------KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQY 172
W+ G + +Y+AS LF IE +L + E+RRWQD ++PGS ++ +Q+
Sbjct: 133 LVWFKTGVIPSEGQYDYWASPLALFWIEVVLMQFAELRRWQDYRHPGSQSKQYFLGLEQF 192
Query: 173 SLPPNEVGYPGG-IFNPLNFAPTDEA----KEKELANGNNS--AKLAYF 214
+ YPGG IFN L + +++ K KEL NG + A L +F
Sbjct: 193 FGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELKNGRLAMVATLGFF 241
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 94/168 (55%), Gaps = 24/168 (14%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPE------NLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
S +YL+GSLPGD GFDPLGL+ DPE N KW +EL++ RWAMLGV GM+ PEV
Sbjct: 58 SLSYLDGSLPGDYGFDPLGLS-DPEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVL 116
Query: 113 TKIGIINAPQ-----WYDAGKA------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPG 161
+GII PQ W+ AG +Y+AS T+F I L + E+RR QD NPG
Sbjct: 117 GGMGII--PQETGLVWFKAGMIPAQGTYDYWASPFTIFWINAFLMNIAELRRAQDYWNPG 174
Query: 162 SVNQDPI--FKQYSLPPNEVGYPGGIFNPLNFAPTDEA--KEKELANG 205
S+ + ++ + YPGG FN + D A K KE+ NG
Sbjct: 175 SMGKQDFAGLEKMLGGSGDPAYPGGFFNFMKQGEKDMAAMKTKEIKNG 222
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 115/236 (48%), Gaps = 33/236 (13%)
Query: 4 VTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPT-- 61
V T S RP S SR SS + E + + +A G + +S
Sbjct: 3 VVTSFSGVALRPAQSVSRPARRSSVVVRSEGSEGSELAKVERVAKAGGLYQNFTSSQALG 62
Query: 62 YLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
YL+G+LPGD GFDPLGL DPE +W +E+++ RWAMLG+ G L PEV I
Sbjct: 63 YLDGTLPGDFGFDPLGLC-DPEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLATI 121
Query: 116 GIINA-PQ---WYDAG-------KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN 164
G I A P+ W+ +G Y+ + TLF +E I+ ++ E++RWQD ++PGS
Sbjct: 122 GAIPASPEEAVWFRSGVIPPAGQYGAYWTDAYTLFWVEAIMMNFAELKRWQDYQSPGSQG 181
Query: 165 QDPIFKQYSLPPNEV-------GYPGG-IFNPLNFAPTDEAKEKELANGNNSAKLA 212
KQY L V YPGG FN LN T EA +K N + +LA
Sbjct: 182 -----KQYFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNEIRNGRLA 232
>gi|255638199|gb|ACU19413.1| unknown [Glycine max]
Length = 156
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 100 MLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 159
MLG G+ +PE TKIG++N P WY AG+ EYF ++TLF++E + E RRW DI
Sbjct: 1 MLGAAGIFIPEFLTKIGVLNTPSWYSAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIK 60
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEAKEKEL 202
PG VN DPIF L +VGYPGG+ F+PL + K K+L
Sbjct: 61 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDL 104
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 90/156 (57%), Gaps = 10/156 (6%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE--WLP-GL 57
MA +TT + AV A K+ F GS A PVS+ AS KV+A WL
Sbjct: 1 MAALTTTSVRAVSAVSARKANF-AGSRASFAAP-AKAPVSARASLKVQAANRELWLKDST 58
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
+P +L+G+LPGD GFDPLGL DPE LK+Y +AEL+N+RWAM+ V G+ E+
Sbjct: 59 VAPAHLDGTLPGDFGFDPLGLGADPERLKYYQEAELMNARWAMMAVAGICTTEILG---- 114
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR 153
I P WY+AG AEY + L ++F + +E+RR
Sbjct: 115 IGGP-WYEAGAAEYDLPINALLAVQFPVMGILELRR 149
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 106/212 (50%), Gaps = 40/212 (18%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------ 85
R + PV A+ ++ W S +YL+G LPGD GFDPLGL+ DPE
Sbjct: 40 RAASTPPVKQGANRQL-----WFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEP 93
Query: 86 KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSS 136
KW E++N R+AMLG G + PE+ K G+I A W+ AG Y+A +
Sbjct: 94 KWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNY 153
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNP 188
TLFV+E L + E RR+QD PGS+ KQY L + YPGG +FNP
Sbjct: 154 TLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGLGGSGDPAYPGGPLFNP 208
Query: 189 LNFAPTD----EAKEKELANGNNS--AKLAYF 214
L F + E K KE+ NG + A L YF
Sbjct: 209 LGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y G L F+PLG +D +++K E+ N R AML ++G + + T
Sbjct: 192 LGGSGDPAYPGGPL-----FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVT 246
Query: 114 KIG 116
+G
Sbjct: 247 GVG 249
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 98/191 (51%), Gaps = 35/191 (18%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE +W E++N R+AMLG VG
Sbjct: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGA 116
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE K+G+I A W+ AG Y+A + TLFV+E L + E RR+QD
Sbjct: 117 IAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDW 176
Query: 158 KNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANG 205
PGS+ KQY L YPGG FNPL F + E K KE+ NG
Sbjct: 177 AKPGSMG-----KQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNG 231
Query: 206 NNS--AKLAYF 214
+ A L YF
Sbjct: 232 RLAMLAILGYF 242
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
N + PG F+PLG +D ++LK E+ N R AML ++G + + T +G
Sbjct: 199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 251
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 96/181 (53%), Gaps = 29/181 (16%)
Query: 38 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSR 97
P + +S ++ +W+PG P YL+GS PGD GFDPL L E PENL+ + ++EL++ R
Sbjct: 33 PCVNGSSSRITMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCR 92
Query: 98 WAMLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYF------ASSSTLFVIEFILFHYV 149
WAML V G+L+PE + A +W G+A Y + T+ VIEF+ +V
Sbjct: 93 WAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFV 152
Query: 150 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANG 205
E +R S+ +DP K+ YPGG F+PL + A E K KE+ NG
Sbjct: 153 EHQR--------SMEKDPEKKK---------YPGGAFDPLGYSKDPAKFHEYKVKEIKNG 195
Query: 206 N 206
Sbjct: 196 R 196
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 92/173 (53%), Gaps = 29/173 (16%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
++ W+PG P YL+GS PGD GFDPLGL E PENL+ Y ++EL++ RWAML V G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDI 157
+L+PE + A +W G+A Y + T+ IEF+ +VE +R
Sbjct: 101 ILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR---- 156
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
S+ +DP K+Y PGG F+PL ++ +E K KE+ NG
Sbjct: 157 ----SMEKDPEKKKY---------PGGAFDPLGYSKDPKKFEELKVKEIKNGR 196
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 97/179 (54%), Gaps = 29/179 (16%)
Query: 40 SSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWA 99
S++AS + +W+PG P+YL+GS PGD GFDPL L E PENL+ + ++EL++ RWA
Sbjct: 36 STNASSRFTMTSDWMPGQPRPSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWA 95
Query: 100 MLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYF------ASSSTLFVIEFILFHYVEI 151
ML V G+L+PE + A +W G+A Y + T+ VIEF+ +VE
Sbjct: 96 MLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEH 155
Query: 152 RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
+R S+ +DP K+ YPGG F+PL ++ E K KE+ NG
Sbjct: 156 QR--------SMEKDPEKKK---------YPGGAFDPLGYSKDPKKFHEYKIKEVKNGR 197
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 92/173 (53%), Gaps = 29/173 (16%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
++ W+PG P YL+GS PGD GFDPLGL E PENL+ Y ++EL++ RWAML V G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDI 157
+L+PE + A +W G+A Y + T+ IEF+ +VE +R
Sbjct: 101 ILVPEALGYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR---- 156
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
S+ +DP K+Y PGG F+PL ++ +E K KE+ NG
Sbjct: 157 ----SMEKDPEKKKY---------PGGAFDPLGYSKDPKKLEELKVKEIKNGR 196
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 113/230 (49%), Gaps = 43/230 (18%)
Query: 14 RPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGF 73
+P AS S+ S + + A PV A+ + W+ S +YL+GSLPGD GF
Sbjct: 25 KPVASASQ---KKSSFVVKAAAAPPVKQGANRPL-----WVASSQSLSYLDGSLPGDYGF 76
Query: 74 DPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQ---WY 124
DPLGL+ DPE +W E++N R+AMLG G + PE+ K G+I A W+
Sbjct: 77 DPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWF 135
Query: 125 D------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL---- 174
AG Y+A + TLFV+E L + E RR QD NPGS+ KQY L
Sbjct: 136 QTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMG-----KQYFLGLEK 190
Query: 175 ---PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
YPGG FNPL F + E K KE+ NG + A L YF
Sbjct: 191 GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G +P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 192 LAGSGNPAY-----PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVT 246
Query: 114 KIG 116
+G
Sbjct: 247 GVG 249
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 10/170 (5%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
MA V + A++ V ++ F+ + + KPVS+ + + +W G P
Sbjct: 1 MAAVASIAASNV--AVLARKAFVGQAVKASAKPAGAKPVSTVV--RADLGKKWYTGAKPP 56
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
YL+GS+PGD G+DPL + +PE LKWY Q E+ N RWAM+GV GML + T+ GI +
Sbjct: 57 AYLDGSMPGDYGYDPLRMGGNPELLKWYQQGEIENGRWAMIGVAGMLFTDALTQFGISDL 116
Query: 121 PQWYDAGKAEYFASS---STLFVIEFILFHYVE---IRRWQDIKNPGSVN 164
P WY+AG +S TL IE +F VE I W+ PG ++
Sbjct: 117 PDWYEAGAVAQASSPFDLQTLIAIEIFVFATVEGFRISTWKKTGKPGFLD 166
>gi|37927438|gb|AAP69815.1| chlorophyll a/b-binding protein, partial [Vitis vinifera]
Length = 96
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/52 (96%), Positives = 51/52 (98%)
Query: 154 WQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
WQDIKNPGSVNQDPIFK YSLPPNEVGYPGGIFNPLNFAPT+EAKEKELANG
Sbjct: 1 WQDIKNPGSVNQDPIFKNYSLPPNEVGYPGGIFNPLNFAPTEEAKEKELANG 52
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 112/230 (48%), Gaps = 43/230 (18%)
Query: 14 RPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGF 73
+P AS S+ S + + A PV A+ + W S +YL+GSLPGD GF
Sbjct: 25 KPVASASQ---KKSSFVVKAAATPPVKQGANRPL-----WFASSQSLSYLDGSLPGDYGF 76
Query: 74 DPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQ---WY 124
DPLGL+ DPE +W E++N R+AMLG G + PE+ K G+I A W+
Sbjct: 77 DPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWF 135
Query: 125 D------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL---- 174
AG Y+A + TLFV+E L + E RR QD NPGS+ KQY L
Sbjct: 136 QTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMG-----KQYFLGLEK 190
Query: 175 ---PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
YPGG FNPL F + E K KE+ NG + A L YF
Sbjct: 191 GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G +P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 192 LAGSGNPAY-----PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVT 246
Query: 114 KIG 116
+G
Sbjct: 247 GVG 249
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 112/230 (48%), Gaps = 43/230 (18%)
Query: 14 RPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGF 73
+P AS S+ S + + A PV A+ + W S +YL+GSLPGD GF
Sbjct: 25 KPVASASQ---KKSSFVVKATATPPVKQGANRPL-----WFASSQSLSYLDGSLPGDYGF 76
Query: 74 DPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWY 124
DPLGL+ DPE +W E++N R+AMLG G + PE+ K G+I A W+
Sbjct: 77 DPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPPETALPWF 135
Query: 125 D------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL---- 174
AG Y+A + TLFV+E L + E RR QD NPGS+ KQY L
Sbjct: 136 QTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMG-----KQYFLGLEK 190
Query: 175 ---PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
YPGG FNPL F + E K KE+ NG + A L YF
Sbjct: 191 GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G +P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 192 LAGSGNPAY-----PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVT 246
Query: 114 KIG 116
+G
Sbjct: 247 GVG 249
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 112/230 (48%), Gaps = 43/230 (18%)
Query: 14 RPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGF 73
+P AS S+ S + + A PV A+ + W S +YL+GSLPGD GF
Sbjct: 25 KPVASASQ---KKSSFVVKAAATPPVKQGANRPL-----WFASSQSLSYLDGSLPGDYGF 76
Query: 74 DPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWY 124
DPLGL+ DPE +W E++N R+AMLG G + PE+ K G+I A W+
Sbjct: 77 DPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWF 135
Query: 125 D------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL---- 174
AG Y+A + TLFV+E L + E RR QD NPGS+ KQY L
Sbjct: 136 QTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMG-----KQYFLGLEK 190
Query: 175 ---PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
YPGG FNPL F + E K KE+ NG + A L YF
Sbjct: 191 GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G +P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 192 LAGSGNPAY-----PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVT 246
Query: 114 KIG 116
+G
Sbjct: 247 GVG 249
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 88/173 (50%), Gaps = 29/173 (16%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
+V EWLPG P YL+GS PGD GFDPLGL E P+NL+ + ++EL++ RWAML V G
Sbjct: 44 RVSMSAEWLPGQPRPAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPG 103
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDI 157
L+PE + A QW G+A Y + + IEF+ +VE RR I
Sbjct: 104 CLIPEALGLGNWVEAQQWAATPGGQATYLGTPVPWGTLPVIIAIEFVAIAFVESRR---I 160
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
P + + YPGG F+PL F+ +E K KE+ NG
Sbjct: 161 GVPSAEKRK--------------YPGGAFDPLGFSKDPKKFEEFKLKEVKNGR 199
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 114/221 (51%), Gaps = 38/221 (17%)
Query: 1 MATVTTQASAAVFRPC---ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGL 57
MA T +SA P +SKSRF ++ L+ V V++++S + +W+PG
Sbjct: 1 MAANTLMSSAISAFPSLLSSSKSRF--AAAVPLSSFV----VTNASSSRFSMSADWMPGQ 54
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
P YL+GS PGD GFDPL L E PENL+ + ++EL++ RWAML V G+L+PE
Sbjct: 55 PRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNW 114
Query: 118 INAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
+ A +W G+A Y + T+ IEF+ +VE +R S+ +DP
Sbjct: 115 VKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQR--------SMEKDPEK 166
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
K+ YPGG F+PL ++ E K KE+ NG
Sbjct: 167 KK---------YPGGAFDPLGYSKDPKTFHEYKVKEIKNGR 198
>gi|8954298|gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Length = 258
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 107/214 (50%), Gaps = 26/214 (12%)
Query: 1 MATVTTQAS----AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG 56
MA T+ A + F S+S+ L +S VA+ P K W+PG
Sbjct: 1 MAAATSGAVLNGLGSSFLSGGSRSQTLLATSIGGKVGVAVSPRRLIVVAAAAPKKSWIPG 60
Query: 57 ------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ + +
Sbjct: 61 VRGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 120
Query: 111 VFTKIGIINAPQWYDAG---KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD- 166
++ + W++AG A S +L + IL +VE +RW D NP S + +
Sbjct: 121 AWSGV------PWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEW 174
Query: 167 -----PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
+ ++ E GYPGG F+PL FA T
Sbjct: 175 ATPWSKTAENFANATGEQGYPGGKFFDPLGFAGT 208
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 109/217 (50%), Gaps = 37/217 (17%)
Query: 6 TQASAAVFRPCASKS--RFLTGSSGKLNREVALKPVSSSA--SFKVEAKGEWLPGLASPT 61
AS++ R C++ L SS R L P ++A S +V EW+PG P
Sbjct: 2 VMASSSGLRSCSAVGVPSLLAPSS----RSGRLAPFCANATTSGRVTMSAEWMPGQPRPA 57
Query: 62 YLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAP 121
+L+GS PGD GFDPLGLA PEN + + ++E+ + RWAML V G+L+PE + A
Sbjct: 58 HLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQ 117
Query: 122 QW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYS 173
+W G+A Y + T+ VIEF+ + E +R ++ +DP K+
Sbjct: 118 EWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR--------TMEKDPEKKK-- 167
Query: 174 LPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
YPGG F+PL F A +E K KE+ NG
Sbjct: 168 -------YPGGAFDPLGFSKDPAKFEEYKLKEIKNGR 197
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 109/217 (50%), Gaps = 37/217 (17%)
Query: 6 TQASAAVFRPCASKS--RFLTGSSGKLNREVALKPVSSSA--SFKVEAKGEWLPGLASPT 61
AS++ R C++ L SS R L P ++A S +V EW+PG P
Sbjct: 2 VMASSSGLRSCSAVGVPSLLAPSS----RSGRLAPFCANATTSGRVTMSAEWMPGQPRPA 57
Query: 62 YLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAP 121
+L+GS PGD GFDPLGLA PEN + + ++E+ + RWAML V G+L+PE + A
Sbjct: 58 HLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQ 117
Query: 122 QW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYS 173
+W G+A Y + T+ VIEF+ + E +R ++ +DP K+
Sbjct: 118 EWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR--------TMEKDPEKKK-- 167
Query: 174 LPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
YPGG F+PL F A +E K KE+ NG
Sbjct: 168 -------YPGGAFDPLGFSKDPAKFEEYKLKEIKNGR 197
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 92/173 (53%), Gaps = 29/173 (16%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
+++ W+PG P YL+GS PGD GFDPLGL E P NL+ Y ++EL++ RWAML V G
Sbjct: 41 RIKMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDI 157
+L+PE + A +W G+A Y + T+ IEF+ +VE +R
Sbjct: 101 ILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR---- 156
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
S+ +DP K+Y PGG F+PL ++ +E K KE+ NG
Sbjct: 157 ----SMEKDPEKKKY---------PGGAFDPLGYSKDPKKLEELKVKEIKNGR 196
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 96/179 (53%), Gaps = 29/179 (16%)
Query: 40 SSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWA 99
+++ S +V EW+PG P +L+GS PGD GFDPLGLA PEN + + ++E+ + RWA
Sbjct: 36 NATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWA 95
Query: 100 MLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEI 151
ML V G+L+PE + A +W G+A Y + S T+ VIEF+ + E
Sbjct: 96 MLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGSLPTILVIEFVAIAFAEH 155
Query: 152 RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
+R ++ +DP K+ YPGG F+PL F A +E K KE+ NG
Sbjct: 156 QR--------TMEKDPEKKK---------YPGGAFDPLGFSKDPAKFEEYKLKEIKNGR 197
>gi|270308992|dbj|BAI52949.1| light-harvesting complex II protein [Citrullus lanatus subsp.
vulgaris]
Length = 255
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 106/209 (50%), Gaps = 25/209 (11%)
Query: 2 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG----- 56
TV + R + L G+ G +N + K V +A+ + K W+P
Sbjct: 6 GTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAA---QPKKSWIPAVKGGG 62
Query: 57 -LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM VVG+ + + ++ I
Sbjct: 63 NLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 122
Query: 116 GIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD---PIF 169
W++AG A S +L + +L +VE +RW D NP S + P
Sbjct: 123 ------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWL 176
Query: 170 K---QYSLPPNEVGYPGG-IFNPLNFAPT 194
+ ++ E GYPGG F+PL FA T
Sbjct: 177 RTAENFANTTGEQGYPGGKFFDPLGFAGT 205
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 95/186 (51%), Gaps = 39/186 (20%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENL-------KWYVQAELVNSRWAMLGVVGMLLPEV 111
S +YL G+LP D GFDPLGL DPE W +E++++RWAMLG G + PE+
Sbjct: 32 SLSYLTGALPADYGFDPLGLL-DPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIAPEI 90
Query: 112 FTKIGIINAPQ------WYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIK 158
G+I PQ W+ +G +Y+ +LF IE IL + E+RRWQD +
Sbjct: 91 LATAGVI--PQTPDEVIWFKSGVIPPAGVYDKYWLDPYSLFFIEVILVQFAELRRWQDFR 148
Query: 159 NPGSVNQDPIFKQYSLPPNEV-------GYPGG-IFNPLNFAPTD--EAKEKELANGNNS 208
NPGS KQY L EV YPGG FN N +D E K KEL NG
Sbjct: 149 NPGSQG-----KQYFLGLEEVLKGSGDPSYPGGQFFNLFNLGKSDLKELKTKELKNG-RL 202
Query: 209 AKLAYF 214
A LA F
Sbjct: 203 AMLAVF 208
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 91/173 (52%), Gaps = 29/173 (16%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
++ W+PG P YL+GS PGD GFDPLGL E P NL+ Y ++EL++ RWAML V G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDI 157
+L+PE + A +W G+A Y + T+ IEF+ +VE +R
Sbjct: 101 ILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR---- 156
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
S+ +DP K+Y PGG F+PL ++ +E K KE+ NG
Sbjct: 157 ----SMEKDPEKKKY---------PGGAFDPLGYSKDPKKLEELKVKEIKNGR 196
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 29/181 (16%)
Query: 38 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSR 97
P +++ S +V +W+PG P YL+GS PGD GFDPL L E PENL+ Y ++EL++ R
Sbjct: 33 PNAAAGSARVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCR 92
Query: 98 WAMLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYV 149
WAML V G+L+PE + A +W G+A Y + T+ IEF+ +V
Sbjct: 93 WAMLAVPGVLVPEALGLGNWVQAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFV 152
Query: 150 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANG 205
E +R S+ +D K+ YPGG F+PL ++ +E K KE+ NG
Sbjct: 153 EHQR--------SMEKDTEKKK---------YPGGAFDPLGYSKDPVKFEEYKVKEIKNG 195
Query: 206 N 206
Sbjct: 196 R 196
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 107/213 (50%), Gaps = 32/213 (15%)
Query: 6 TQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNG 65
T S + C S FL+ + K + + ++++ + +W+PG P+YL+G
Sbjct: 5 TLMSCGIPAVCPS---FLSSTKSKFAAAMPVSVGATNSMSRFSMSADWMPGQPRPSYLDG 61
Query: 66 SLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW-- 123
S PGD GFDPLGL E P NL+ Y ++EL++ RWAML V G+++PE + A +W
Sbjct: 62 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAA 121
Query: 124 YDAGKAEYF------ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
G+A Y + T+ IEF+ +VE +R S+ +D K+
Sbjct: 122 IPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKDSEKKK------ 167
Query: 178 EVGYPGGIFNPLNF----APTDEAKEKELANGN 206
YPGG F+PL + A +E K KE+ NG
Sbjct: 168 ---YPGGAFDPLGYSKDPAKFEELKVKEIKNGR 197
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 126/254 (49%), Gaps = 53/254 (20%)
Query: 3 TVTTQASA-AVFRPCASKSRFLTGSSGKLNREVALKPVSSS---ASFKVEAKGE------ 52
TV +A A AVF P A + R + G++ V+ P+ +S +S V A +
Sbjct: 4 TVACRAVAGAVFAP-AQEQRLMGGNA----LRVSFAPIGTSNARSSIVVRASSDKPVKAN 58
Query: 53 ---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGV 103
S +YL+GSLPGD GFDPLGL+ DP+ W AE++N R+AMLG
Sbjct: 59 RQLIFASEQSLSYLDGSLPGDYGFDPLGLS-DPQGAGGFIDPNWLRYAEIINGRFAMLGA 117
Query: 104 VGMLLPEVFTKIGII---NAPQWYDA------GKAEYFASSSTLFVIEFILFHYVEIRRW 154
G + PE+F KIG+I A W+ G+ Y+A TLFV+E L + E RR
Sbjct: 118 AGAIAPEIFGKIGLIPQETAIPWFQTGVIPPLGQYSYWADPYTLFVLEMALMGFAEHRRA 177
Query: 155 QDIKNPGSVNQDPIFKQYSLPPNEV-------GYPGG-IFNPLNFAPTDEA----KEKEL 202
QD PGS+ KQY L +V YPGG +FN L F +++ K KE+
Sbjct: 178 QDYYKPGSMG-----KQYFLGFEKVLGGSGDPAYPGGPLFNFLGFGRDEKSMKDLKVKEV 232
Query: 203 ANGNNS--AKLAYF 214
NG + A L YF
Sbjct: 233 KNGRLAMLAVLGYF 246
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y G L F+ LG D +++K E+ N R AML V+G + +FT
Sbjct: 198 LGGSGDPAYPGGPL-----FNFLGFGRDEKSMKDLKVKEVKNGRLAMLAVLGYFIQAIFT 252
Query: 114 KIG 116
+G
Sbjct: 253 GVG 255
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 21/166 (12%)
Query: 61 TYLNGSLPGDNGFDPLGLAEDPE------NLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
TYL+G+LPGD GFDPLG++ DPE N +W +E+++ RWAMLGV G++ PEV
Sbjct: 96 TYLDGTLPGDFGFDPLGMS-DPEGQGGFVNPQWLAYSEVIHGRWAMLGVAGVVAPEVLGG 154
Query: 115 IGIINAPQ---WYDAGKA------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
+GII A W+ +G +Y+A +T+F + +L ++ E++R QD PGS +
Sbjct: 155 MGIIPADTGLVWFKSGAIPPQGTFDYWADPTTIFWVNMVLMNFAEVKRGQDYWYPGSQGE 214
Query: 166 DPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTDEAK--EKELANGN 206
P+ +++ YPGG FN N TD AK +KE+ NG
Sbjct: 215 TPLMGWEKGFAGSGAPAYPGGKYFNFANLGKTDMAKMQKKEIKNGR 260
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 110/230 (47%), Gaps = 43/230 (18%)
Query: 14 RPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGF 73
+P AS S+ S + + A PV A+ + W S +YL+GSLPGD GF
Sbjct: 25 KPVASASQ---KKSSFVVKAAATPPVKQGANRPL-----WFASSQSLSYLDGSLPGDYGF 76
Query: 74 DPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWY--- 124
DPLGL+ DPE +W E++N R+AMLG G + PE+ K G+I A
Sbjct: 77 DPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPXX 135
Query: 125 ------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL---- 174
AG Y+A + TLFV+E L + E RR QD NPGS+ KQY L
Sbjct: 136 QTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMG-----KQYFLGLEK 190
Query: 175 ---PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
YPGG FNPL F + E K KE+ NG + A L YF
Sbjct: 191 GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G +P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 192 LAGSGNPAY-----PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVT 246
Query: 114 KIG 116
+G
Sbjct: 247 GVG 249
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 108/218 (49%), Gaps = 37/218 (16%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
MAT ++ +AV P L SS + V ++ S +V EW+PG P
Sbjct: 1 MATSGLRSCSAVGVP-----SLLAPSSNRSRLPVC---AYATTSGRVTMSAEWMPGQPRP 52
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
+L+GS PGD GFDPLGLA PEN + + ++E+ + RWAML V G+L+PE + A
Sbjct: 53 AHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQA 112
Query: 121 PQWY--DAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
+W G+A Y + T+ VIEF+ + E +R ++ +DP K+
Sbjct: 113 QEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQR--------TMEKDPEKKK- 163
Query: 173 SLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
YPGG F+PL F+ +E K KE+ NG
Sbjct: 164 --------YPGGAFDPLGFSKDPVKFEEYKLKEIKNGR 193
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 108/218 (49%), Gaps = 37/218 (16%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
MAT ++ +AV P L SS + V ++ S +V EW+PG P
Sbjct: 1 MATSGLRSCSAVGVP-----SLLAPSSNRSRLPVC---AYATTSGRVTMSAEWMPGQPRP 52
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
+L+GS PGD GFDPLGLA PEN + + ++E+ + RWAML V G+L+PE + A
Sbjct: 53 AHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQA 112
Query: 121 PQWY--DAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
+W G+A Y + T+ VIEF+ + E +R ++ +DP K+
Sbjct: 113 QEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQR--------TMEKDPEKKK- 163
Query: 173 SLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
YPGG F+PL F+ +E K KE+ NG
Sbjct: 164 --------YPGGAFDPLGFSKDPVKFEEYKLKEIKNGR 193
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 93/172 (54%), Gaps = 25/172 (14%)
Query: 67 LPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII-- 118
LPGD GFDPLGL+ DPE KW E++N R+AMLG VG + PE+F K+GII
Sbjct: 6 LPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGIIPP 64
Query: 119 -NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--F 169
A W+ AG Y+A S TLFV L + E RR QD NPGS+ +
Sbjct: 65 ETALPWFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQYFLGL 124
Query: 170 KQYSLPPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
+++ + YPGG +FNPL F T+ E K KE+ NG + A L YF
Sbjct: 125 EKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYF 176
>gi|255629343|gb|ACU15016.1| unknown [Glycine max]
Length = 247
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 22/161 (13%)
Query: 50 KGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K WLPG L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 57 KKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 116
Query: 104 VGMLLPEVFTKIGIINAPQWYDAG---KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + + ++ + W++AG A S TL + IL +VE +RW D NP
Sbjct: 117 LGIFVGQAWSGV------PWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNP 170
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
S + + + ++ E GYPGG F+PL+ A T
Sbjct: 171 DSQSVEWATPWSRTSENFANATGEQGYPGGKFFDPLSLAGT 211
>gi|356525886|ref|XP_003531552.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Glycine max]
Length = 261
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 22/161 (13%)
Query: 50 KGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K WLPG L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 57 KKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 116
Query: 104 VGMLLPEVFTKIGIINAPQWYDAG---KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + + ++ + W++AG A S TL + IL +VE +RW D NP
Sbjct: 117 LGIFVGQAWSGV------PWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNP 170
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
S + + + ++ E GYPGG F+PL+ A T
Sbjct: 171 DSQSVEWATPWSRTSENFANATGEQGYPGGKFFDPLSLAGT 211
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 35/202 (17%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPL 76
+SKSRF T ++ V++++S + +W+PG P YL+GS PGD GFDPL
Sbjct: 14 SSKSRFATAVP------LSSFGVTNASSSRFSMSADWMPGQPRPPYLDGSAPGDFGFDPL 67
Query: 77 GLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFAS 134
L E PENL+ + ++EL++ WAML V G+L+PE + A +W G+A Y +
Sbjct: 68 RLGEVPENLERFKESELIHCGWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGN 127
Query: 135 S------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNP 188
T+ IEF+ +VE +R S+ +DP K+ YPGG F+P
Sbjct: 128 PVPWGTLPTILAIEFLAISFVEHQR--------SMGKDPEKKK---------YPGGAFDP 170
Query: 189 LNFAPT----DEAKEKELANGN 206
L ++ E K KEL NG
Sbjct: 171 LGYSKDPKTFHEYKVKELKNGR 192
>gi|357445799|ref|XP_003593177.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
gi|355482225|gb|AES63428.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
Length = 261
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 90/163 (55%), Gaps = 22/163 (13%)
Query: 50 KGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K W+PG L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 57 KKSWIPGVRFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 116
Query: 104 VGMLLPEVFTKIGIINAPQWYDAG---KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + + ++ + W++AG A S TL + IL +VE +RW D NP
Sbjct: 117 LGIFVGQAWSGV------PWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNP 170
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPTDE 196
S + + + ++ E GYPGG F+PL+ A T E
Sbjct: 171 DSQSIEWATPWSKTAENFANATGEQGYPGGKFFDPLSLAGTIE 213
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 28/179 (15%)
Query: 36 LKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVN 95
L +++ + KV + W+PG A P+YL+GS+P D GFDPLGL ++P+NL + +AEL++
Sbjct: 22 LATQTTNGTSKVSMRATWMPGSAPPSYLDGSMPCDYGFDPLGLGKEPDNLARFQEAELIH 81
Query: 96 SRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASS-----STLFVIEFILFHYVE 150
+RWAMLGV G E+ T I + AP + Y ++ + IE + YVE
Sbjct: 82 ARWAMLGVSGAAGAEIITGINWVEAPV---QSQQTYLGNTIPFPLPAIAAIEVFVMAYVE 138
Query: 151 IRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF---APTDEAKEKELANGN 206
+R + + YPGG F+P F A ++ K KELANG
Sbjct: 139 SKRGSETDRSKRM-----------------YPGGAFDPAGFSKGADFEKLKRKELANGR 180
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 93/178 (52%), Gaps = 29/178 (16%)
Query: 41 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
++ S +V EW+PG P +L+GS PGD GFDPLGLA PEN + + ++E+ + RWAM
Sbjct: 41 ATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAM 100
Query: 101 LGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIR 152
L V G+L+PE + A +W G+A Y + T+ +EF+ + E +
Sbjct: 101 LAVPGVLVPEALGLGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFAEHQ 160
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
R ++ +DP K+ YPGG F+PL F A +E K KE+ NG
Sbjct: 161 R--------TMEKDPEKKK---------YPGGAFDPLGFSRDPAKLEEYKLKEIKNGR 201
Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
FDPLG + DP L+ Y E+ N R AML VG +
Sbjct: 177 FDPLGFSRDPAKLEEYKLKEIKNGRLAMLAFVGFCV 212
>gi|224070503|ref|XP_002303160.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118487218|gb|ABK95437.1| unknown [Populus trichocarpa]
gi|118489807|gb|ABK96703.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222840592|gb|EEE78139.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 106/198 (53%), Gaps = 27/198 (13%)
Query: 16 CASK-SRFLTG--SSGKLNREVALKPVSSSASFKVEAKGEWLPGL------ASPTYLNGS 66
C K SR L+G ++G + V + ++ A+ + K W+P + P +L+GS
Sbjct: 18 CGGKRSRALSGIGATGIGSCSVGARKLTIVAA--AQPKKSWIPAVKGGGSFVDPEWLDGS 75
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGD GFDPLGL +DP LKWY +AEL++ RWAM VVG+ + + ++ I W++A
Sbjct: 76 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 129
Query: 127 GK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPN 177
G A S +L + IL +VE +RW D NP S + + + ++
Sbjct: 130 GADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPESQSVEWATPWSKTAENFANATG 189
Query: 178 EVGYPGG-IFNPLNFAPT 194
+ GYPGG F+PL FA T
Sbjct: 190 DQGYPGGKFFDPLGFAGT 207
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 29/178 (16%)
Query: 41 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
++ S +V EW PG P +L+GS PGD GFDPLGLA PEN + + ++E+ + RWAM
Sbjct: 61 ATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAM 120
Query: 101 LGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIR 152
L V G+L+PE + A +W G+A Y + T+ IEF+ + E +
Sbjct: 121 LCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQ 180
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
R ++ +DP K+ YPGG F+PL F A +E K KE+ NG
Sbjct: 181 R--------TMEKDPEKKK---------YPGGAFDPLGFSKDPAKFEELKLKEIKNGR 221
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 93/178 (52%), Gaps = 29/178 (16%)
Query: 41 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
++ S +V EW PG P +L+GS PGD GFDPLGLA PEN + + ++E+ + RWAM
Sbjct: 38 ATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAM 97
Query: 101 LGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYF------ASSSTLFVIEFILFHYVEIR 152
L V G+L+PE + A +W G+A YF + T+ IEF+ + E +
Sbjct: 98 LCVPGVLVPEALGLGNWVKAQEWAALPDGQATYFGVPVPWGNLPTILAIEFLAIAFAEQQ 157
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
R ++ +DP K+ YPGG F+PL F A +E K KE+ NG
Sbjct: 158 R--------TMEKDPEKKK---------YPGGAFDPLGFSKDPAKFEELKLKEIKNGR 198
>gi|224054274|ref|XP_002298178.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118486723|gb|ABK95197.1| unknown [Populus trichocarpa]
gi|222845436|gb|EEE82983.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 103/202 (50%), Gaps = 35/202 (17%)
Query: 20 SRFLTGSSGKLNREVALKPVSSSASFKV-----------EAKGEWLPG------LASPTY 62
S FL G GK N+ + S + SF V + K W+P L P +
Sbjct: 14 SSFLCG--GKRNQALLGIGASRTGSFPVGTRKLVVVAAAQPKKSWIPAVKGGGSLVDPEW 71
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQ 122
L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ + + ++ I
Sbjct: 72 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------P 125
Query: 123 WYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYS 173
W++AG A S +L + +L +VE +RW D NP S + + + ++
Sbjct: 126 WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSKTAENFA 185
Query: 174 LPPNEVGYPGG-IFNPLNFAPT 194
+ GYPGG F+PL FA T
Sbjct: 186 NATGDQGYPGGKFFDPLGFAGT 207
>gi|255585659|ref|XP_002533515.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526625|gb|EEF28871.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 256
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 101/198 (51%), Gaps = 29/198 (14%)
Query: 20 SRFLTG--SSGKLNREVALKPVSSSASFK-----VEAKGEWLPGLAS------PTYLNGS 66
S FL G S L + +S AS K + K W+P + P +L+GS
Sbjct: 15 SSFLRGPKRSHALLSAIGANRTASGASTKFVVMAAQPKKSWIPAVKGGGNFIDPEWLDGS 74
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ + + ++ I W++A
Sbjct: 75 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVIGIFVGQAWSGI------PWFEA 128
Query: 127 GK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPN 177
G A S +L + IL +VE +RW D NP S + + + ++
Sbjct: 129 GADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSRTSENFANATG 188
Query: 178 EVGYPGG-IFNPLNFAPT 194
E GYPGG F+PL FA T
Sbjct: 189 EQGYPGGKFFDPLGFAGT 206
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 91/166 (54%), Gaps = 28/166 (16%)
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
EWLPG P+YL+GS PGD GFDPLGL E PENL+ + ++EL+++RWAML + G+L+PE
Sbjct: 3 EWLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEA 62
Query: 112 FTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSV 163
++A +W G+A Y + + +EFI +VE +R +
Sbjct: 63 LGYGNWVSAQKWAATPGGQATYLGNPVPWGNLPIILAVEFIAIAFVESQR--------NG 114
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNF---APTDEAKEKELANGN 206
DP ++ YPGG F+PL F A +E K KE+ NG
Sbjct: 115 ESDPEKRK---------YPGGPFDPLGFSKGANLEELKLKEIKNGR 151
>gi|116309995|emb|CAH67022.1| H0523F07.10 [Oryza sativa Indica Group]
Length = 252
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 22/162 (13%)
Query: 47 VEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
V AK W+P S P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM
Sbjct: 45 VSAKKSWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM 104
Query: 101 LGVVGMLLPEVFTKIGIINAPQWYDAG-KAEYFA--SSSTLFVIEFILFHYVEIRRWQDI 157
V+G+ + + ++ + W++AG + E A SS +L + +L +VE +RW D
Sbjct: 105 AAVLGIFVGQAWSGV------PWFEAGAQPEAIAPFSSGSLLGTQLLLMGWVESKRWVDF 158
Query: 158 KNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFA 192
NP S + + + +S E GYPGG F+PL
Sbjct: 159 FNPDSQSVEWATPWSRTAENFSNATGEQGYPGGKFFDPLGLG 200
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 97/202 (48%), Gaps = 38/202 (18%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPL 76
++KSRF + +S + R +V EW+PG P +L+GS PGD GFDPL
Sbjct: 22 SAKSRFFSPTSSLVGRR---------HGSRVSMSAEWMPGQPRPPHLDGSAPGDFGFDPL 72
Query: 77 GLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFAS 134
L PENL+ Y ++EL++ RWAML V GML+PE + A +W +A YF
Sbjct: 73 RLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGLGNWVEAQKWAAIPGSQATYFGV 132
Query: 135 S------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNP 188
+ +EF+ +VE +R N +P P + YPGG F+P
Sbjct: 133 PVPWGYLPIVLAVEFLAIAFVESQR----------NGEPD-------PEKRKYPGGAFDP 175
Query: 189 LNFAPT----DEAKEKELANGN 206
L F+ E K KE+ NG
Sbjct: 176 LGFSKDPVKFKEYKVKEIKNGR 197
>gi|145079136|tpg|DAA05900.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Acetabularia acetabulum]
Length = 192
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 71/110 (64%), Gaps = 5/110 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
WL G A+P +L+GSL GD GFDPLGL +P+ LKWYV+AE N RWAM+ V G+L E+
Sbjct: 12 WLVGAAAPEHLDGSLAGDFGFDPLGLGSEPDRLKWYVEAEKTNGRWAMMAVAGILGQEL- 70
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
+G+ P+W++AG +Y L +E I+ ++E +R+Q K GS
Sbjct: 71 --LGV--TPKWFEAGAKDYGIPFFPLLAMEAIILGFLETKRYQGFKTTGS 116
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 29/178 (16%)
Query: 41 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
++ S +V EW PG P +L+GS PGD GFDPLGLA PEN + + ++E+ + RWAM
Sbjct: 38 ATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAM 97
Query: 101 LGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIR 152
L V G+L+PE + A +W G+A Y + T+ IEF+ + E +
Sbjct: 98 LCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQ 157
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
R ++ +DP K+ YPGG F+PL F A +E K KE+ NG
Sbjct: 158 R--------TMEKDPEKKK---------YPGGAFDPLGFSKDPAKFEELKLKEIKNGR 198
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 92/176 (52%), Gaps = 32/176 (18%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEV 111
+S YL+GSLPGD GFDPLGL DP N KW +E++++RWAMLG G + PEV
Sbjct: 52 SSLAYLDGSLPGDFGFDPLGLL-DPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEV 110
Query: 112 FTKIGII---NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPG 161
G+I +W+++G Y+A T+F +E + + E+RR QD + PG
Sbjct: 111 LGAAGLIPDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPG 170
Query: 162 SVNQ------DPIFKQYSLPPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGN 206
S+ Q + IFK + YPGG FN N T+ E K KE+ NG
Sbjct: 171 SMGQQYFLGLEAIFKG----SGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGR 222
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 91/166 (54%), Gaps = 28/166 (16%)
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
EWLPG P+YL+GS PGD GFDPLGL E PENL+ + ++EL+++RWAML V G+L+PE
Sbjct: 3 EWLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEA 62
Query: 112 FTKIGIINAPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSV 163
++A +W G+A Y + + + +EFI + E +R +
Sbjct: 63 LGYGNWVSAQKWAATPGGQATYLGNPVPWGTLPVILAVEFIAIAFAESQR--------NG 114
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNF---APTDEAKEKELANGN 206
DP ++ YPGG F+P+ F A +E K KE+ NG
Sbjct: 115 ESDPEKRK---------YPGGAFDPMGFSKGANLEELKLKEIKNGR 151
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 92/176 (52%), Gaps = 32/176 (18%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEV 111
+S YL+GSLPGD GFDPLGL DP N KW +E++++RWAMLG G + PEV
Sbjct: 52 SSLAYLDGSLPGDFGFDPLGLL-DPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEV 110
Query: 112 FTKIGII---NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPG 161
G+I +W+++G Y+A T+F +E + + E+RR QD + PG
Sbjct: 111 LGAAGLIPDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPG 170
Query: 162 SVNQ------DPIFKQYSLPPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGN 206
S+ Q + IFK + YPGG FN N T+ E K KE+ NG
Sbjct: 171 SMGQQYFLGLEAIFKG----SGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGR 222
>gi|255646598|gb|ACU23773.1| unknown [Glycine max]
Length = 258
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 108/214 (50%), Gaps = 30/214 (14%)
Query: 1 MATVTTQAS----AAVFRPCASKSRFLTGSS--GKLNREVALKPVSSSASFKVEAKGEWL 54
MA T+ A + F +S L +S GK+ V+ K V + + K W+
Sbjct: 1 MAAATSSAVLNGFGSHFLCGGKRSHALLAASIGGKVGASVSPKRVIVAVA--AAPKKSWI 58
Query: 55 PGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM VVG+ +
Sbjct: 59 PAVKGGGSFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFI 118
Query: 109 PEVFTKIGIINAPQWYDAG---KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
+ ++ + W++AG A S +L + +L +VE +RW D NP S++
Sbjct: 119 GQAWSGV------PWFEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSLSV 172
Query: 166 D------PIFKQYSLPPNEVGYPGG-IFNPLNFA 192
+ + + E GYPGG F+PL FA
Sbjct: 173 EWATPWSKTAENFGNSTGEQGYPGGKFFDPLGFA 206
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 92/178 (51%), Gaps = 29/178 (16%)
Query: 41 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
++ S +V EW PG P +L+GS PGD GFDPLGL PEN + + ++E+ + RWAM
Sbjct: 38 ATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAM 97
Query: 101 LGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYF------ASSSTLFVIEFILFHYVEIR 152
L V G+L+PE + A +W G+A YF + T+ IEF+ + E +
Sbjct: 98 LCVPGVLVPEALGLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQ 157
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
R ++ +DP K+ YPGG F+PL F+ +E K KE+ NG
Sbjct: 158 R--------TMEKDPEKKK---------YPGGAFDPLGFSKDPVKLEEYKLKEIKNGR 198
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
FDPLG ++DP L+ Y E+ N R AML VG +
Sbjct: 174 FDPLGFSKDPVKLEEYKLKEIKNGRLAMLAFVGFCV 209
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 29/178 (16%)
Query: 41 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
++ S +V EW PG P +L+GS PGD GFDPLGLA PEN + + ++E+ + RWAM
Sbjct: 36 ATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAM 95
Query: 101 LGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIR 152
L V G+L+PE + A +W G+A Y + T+ IEF+ + E +
Sbjct: 96 LCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQ 155
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
R ++ +DP K+ YPGG F+PL F A +E K KE+ NG
Sbjct: 156 R--------TMEKDPEKKK---------YPGGAFDPLGFSKDPAKFEELKLKEIKNGR 196
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 92/179 (51%), Gaps = 29/179 (16%)
Query: 40 SSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWA 99
S + + +V W+PG P YL+GS PGD GFDPL L E PENL+ Y ++EL++ RWA
Sbjct: 34 SVNGTSRVTMSANWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWA 93
Query: 100 MLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFA------SSSTLFVIEFILFHYVEI 151
ML V G+L+PE + A +W G+A Y + + IEF+ +VE
Sbjct: 94 MLAVPGILVPEALGLGNWVKAQEWAATPGGQATYLGQPVPWGTLPIILAIEFVAIAFVEH 153
Query: 152 RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
+R S+ +D K+Y PGG F+PL ++ +E K KE+ NG
Sbjct: 154 QR--------SMEKDTEKKKY---------PGGAFDPLGYSKDPQKFEEYKVKEIKNGR 195
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 92/178 (51%), Gaps = 29/178 (16%)
Query: 41 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
++ S +V EW PG P +L+GS PGD GFDPLGL PEN + + ++E+ + RWAM
Sbjct: 6 ATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAM 65
Query: 101 LGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYF------ASSSTLFVIEFILFHYVEIR 152
L V G+L+PE + A +W G+A YF + T+ IEF+ + E +
Sbjct: 66 LCVPGVLVPEALGLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFVAIAFAEHQ 125
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
R ++ +DP K+ YPGG F+PL F+ +E K KE+ NG
Sbjct: 126 R--------TMEKDPEKKK---------YPGGAFDPLGFSKDPVKFEEYKLKEIKNGR 166
>gi|62638125|gb|AAX92668.1| chloroplast chlorophyll a-b binding protein [Dunaliella salina]
Length = 217
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 11/141 (7%)
Query: 24 TGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPE 83
T S G++ A + V++ A A+ W PG P +L+GS+ GD GFDPL L +P+
Sbjct: 21 TRSVGRITPAPARRSVAAQA-----AREMWYPGATPPAHLDGSMLGDYGFDPLRLGTNPD 75
Query: 84 NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEF 143
+KW+ +AEL N RWAM VVG+L FT ++ P+W++AG Y + TL +IE
Sbjct: 76 RMKWFREAELTNGRWAMAAVVGIL----FTD--LVGLPKWWEAGAQTYPIDNQTLAIIEI 129
Query: 144 ILFHYVEIRRWQDIKNPGSVN 164
+F ++E +R++ K G
Sbjct: 130 AVFAFLEAKRYEGYKKTGGTG 150
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 105/213 (49%), Gaps = 32/213 (15%)
Query: 6 TQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNG 65
T S + C S FL+ + K + + +++ + +W+PG P+YL+G
Sbjct: 5 TLMSCGIPAVCPS---FLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDG 61
Query: 66 SLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW-- 123
S PGD GFD LGL E P NL+ Y ++EL++ RWAML V G+++PE + A +W
Sbjct: 62 SAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAA 121
Query: 124 YDAGKAEYF------ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
G+A Y + T+ IEF+ +VE +R S+ +D K+
Sbjct: 122 IPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKDSEKKK------ 167
Query: 178 EVGYPGGIFNPLNF----APTDEAKEKELANGN 206
YPGG F+PL + A +E K KE+ NG
Sbjct: 168 ---YPGGAFDPLGYSKDPAKFEELKVKEIKNGR 197
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 88/165 (53%), Gaps = 29/165 (17%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
+PG P YL+GS PGD GFDPLGL E P NL+ Y ++EL++ RWAML V G+L+PE
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 60
Query: 114 KIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
+ A +W G+A Y + T+ IEF+ +VE +R S+ +
Sbjct: 61 YGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SMEK 112
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
DP K+Y PGG F+PL ++ +E K KE+ NG
Sbjct: 113 DPEKKKY---------PGGAFDPLGYSKDPKKLEELKVKEIKNGR 148
>gi|192764577|gb|ACF05832.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 95/177 (53%), Gaps = 18/177 (10%)
Query: 31 NREVALKPVSSSASFKVEAKGEWLPGL------ASPTYLNGSLPGDNGFDPLGLAEDPEN 84
+R V + ++ A+ + K W+P + P +L+GSLPGD GFDPLGL +DP
Sbjct: 2 SRSVGARKLTIVAA--AQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPTF 59
Query: 85 LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFI 144
LKWY +AEL++ RWAM VVG+ + + ++ I A D G F S +L + I
Sbjct: 60 LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEACA--DPGAIAPF-SFGSLLGTQLI 116
Query: 145 LFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
L +VE +RW D NP S + + + ++ + GYPGG F+PL FA T
Sbjct: 117 LMGWVESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGT 173
>gi|192764597|gb|ACF05842.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 90/164 (54%), Gaps = 22/164 (13%)
Query: 47 VEAKGEWLPGL------ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
+ K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM
Sbjct: 16 AQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 75
Query: 101 LGVVGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDI 157
VVG+ + + ++ I W++AG A S +L + IL +VE +RW D
Sbjct: 76 AAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDF 129
Query: 158 KNP--GSVNQDPIFKQ----YSLPPNEVGYPGG-IFNPLNFAPT 194
NP SV P + + ++ + GYPGG F+PL FA T
Sbjct: 130 FNPESQSVEWAPPWSKTAENFANATGDQGYPGGKFFDPLGFAGT 173
>gi|356512075|ref|XP_003524746.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein
CP24 10A, chloroplastic-like [Glycine max]
Length = 258
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 18 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS------PTYLNGSLPGDN 71
S + G GK+ V+ P + K W+P + P +L+GSLPGD
Sbjct: 24 SHALLAAGIGGKVGAVVS--PXRVIVAVAAAPKKSWIPAVKGGGNFIDPEWLDGSLPGDY 81
Query: 72 GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAG---K 128
GFDPLGL +DP LKWY +AEL++ RWAM VVG+ + + ++ + W++AG
Sbjct: 82 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGV------PWFEAGADPN 135
Query: 129 AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYP 182
A S +L + +L +VE +RW D NP S + + + + E GYP
Sbjct: 136 AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFGNSTGEQGYP 195
Query: 183 GG-IFNPLNFAPT 194
GG F+PL FA T
Sbjct: 196 GGKFFDPLGFAGT 208
>gi|356524850|ref|XP_003531041.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 1 [Glycine max]
gi|356524852|ref|XP_003531042.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 2 [Glycine max]
Length = 258
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 107/214 (50%), Gaps = 30/214 (14%)
Query: 1 MATVTTQAS----AAVFRPCASKSRFLTGSS--GKLNREVALKPVSSSASFKVEAKGEWL 54
MA T+ A + F +S L +S GK+ V+ K V + + K W+
Sbjct: 1 MAAATSSAVLNGFGSHFLCGGKRSHALLAASIGGKVGASVSPKRVIVAVA--AAPKKSWI 58
Query: 55 PGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM VVG+ +
Sbjct: 59 PAVKGGGSFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFI 118
Query: 109 PEVFTKIGIINAPQWYDAG---KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
+ ++ + W++AG A S +L + +L +VE +RW D NP S +
Sbjct: 119 GQAWSGV------PWFEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSV 172
Query: 166 D------PIFKQYSLPPNEVGYPGG-IFNPLNFA 192
+ + + E GYPGG F+PL FA
Sbjct: 173 EWATPWSKTAENFGNSTGEQGYPGGKFFDPLGFA 206
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 89/167 (53%), Gaps = 29/167 (17%)
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
+W+PG P YL+GS PGD GFDPL L E PENL+ Y ++EL++ RWAML V G+L+PE
Sbjct: 4 DWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEA 63
Query: 112 FTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSV 163
+ A +W G+A Y + T+ IEF+ +VE +R S+
Sbjct: 64 LGLGNWVQAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQR--------SM 115
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
+D K+ YPGG F+PL ++ +E K KE+ NG
Sbjct: 116 EKDTEKKK---------YPGGAFDPLGYSKDPVKFEEYKVKEIKNGR 153
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 92/176 (52%), Gaps = 32/176 (18%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEV 111
+S YL+G+LPGD GFDPLGL DP N KW +E++++RWAMLG G + PEV
Sbjct: 39 SSLAYLDGTLPGDFGFDPLGLL-DPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEV 97
Query: 112 FTKIGII---NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPG 161
G+I +W+++G Y+A T+F +E + + E+RR QD + PG
Sbjct: 98 LGAAGLIPDATNIKWFESGVIPPAGSYDGYWADPYTIFFVEIVAMQFAELRRLQDFRYPG 157
Query: 162 SVNQ------DPIFKQYSLPPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGN 206
S+ Q + IFK + YPGG FN N T+ E K KE+ NG
Sbjct: 158 SMGQQYFLGLEAIFKG----SGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGR 209
>gi|192764599|gb|ACF05843.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764603|gb|ACF05845.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 89/164 (54%), Gaps = 22/164 (13%)
Query: 47 VEAKGEWLPGL------ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
+ K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM
Sbjct: 16 AQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAELIHGRWAM 75
Query: 101 LGVVGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDI 157
VVG+ + + ++ I W++AG A S +L + IL +VE +RW D
Sbjct: 76 AAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDF 129
Query: 158 KNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
NP S + + + ++ + GYPGG F+PL FA T
Sbjct: 130 FNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGT 173
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 96/185 (51%), Gaps = 35/185 (18%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVF 112
S +YL+G+LPGD GFDPLGL DPE +W AE++N R+AMLG G + PEV
Sbjct: 13 SLSYLDGTLPGDYGFDPLGLM-DPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVL 71
Query: 113 TKIGII---NAPQWYDA------GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSV 163
+IG+I A W+ + G Y+A TLFV+E L + E RR QD PGS+
Sbjct: 72 GRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSM 131
Query: 164 NQDPIFKQYSLPPNEV-------GYPGG-IFNPLNFAPTD----EAKEKELANGNNS--A 209
KQY L + YPGG IFN L F + E K KE+ NG + A
Sbjct: 132 G-----KQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMA 186
Query: 210 KLAYF 214
L YF
Sbjct: 187 VLGYF 191
>gi|192764617|gb|ACF05852.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 89/164 (54%), Gaps = 22/164 (13%)
Query: 47 VEAKGEWLPGL------ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
+ K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM
Sbjct: 16 AQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 75
Query: 101 LGVVGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDI 157
VVG+ + + ++ I W++AG A S +L + IL +VE +RW D
Sbjct: 76 AAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDF 129
Query: 158 KNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
NP S + + + ++ + GYPGG F+PL FA T
Sbjct: 130 FNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGT 173
>gi|192764579|gb|ACF05833.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764581|gb|ACF05834.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764583|gb|ACF05835.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764585|gb|ACF05836.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764587|gb|ACF05837.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764589|gb|ACF05838.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764601|gb|ACF05844.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764605|gb|ACF05846.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764607|gb|ACF05847.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764609|gb|ACF05848.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764611|gb|ACF05849.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764613|gb|ACF05850.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764615|gb|ACF05851.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764619|gb|ACF05853.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764621|gb|ACF05854.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 89/164 (54%), Gaps = 22/164 (13%)
Query: 47 VEAKGEWLPGL------ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
+ K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM
Sbjct: 16 AQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 75
Query: 101 LGVVGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDI 157
VVG+ + + ++ I W++AG A S +L + IL +VE +RW D
Sbjct: 76 AAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDF 129
Query: 158 KNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
NP S + + + ++ + GYPGG F+PL FA T
Sbjct: 130 FNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGT 173
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 96/185 (51%), Gaps = 35/185 (18%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVF 112
S +YL+G+LPGD GFDPLGL DPE +W AE++N R+AMLG G + PEV
Sbjct: 13 SLSYLDGTLPGDYGFDPLGLM-DPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVL 71
Query: 113 TKIGII---NAPQWYDA------GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSV 163
+IG+I A W+ + G Y+A TLFV+E L + E RR QD PGS+
Sbjct: 72 GRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSM 131
Query: 164 NQDPIFKQYSLPPNEV-------GYPGG-IFNPLNFAPTD----EAKEKELANGNNS--A 209
KQY L + YPGG IFN L F + E K KE+ NG + A
Sbjct: 132 G-----KQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMA 186
Query: 210 KLAYF 214
L YF
Sbjct: 187 VLGYF 191
>gi|192764575|gb|ACF05831.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 87/161 (54%), Gaps = 16/161 (9%)
Query: 47 VEAKGEWLPGL------ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
+ K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM
Sbjct: 16 AQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 75
Query: 101 LGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
VVG+ + + ++ I A D G F S +L + IL +VE +RW D NP
Sbjct: 76 AAVVGIFVGQAWSGIPWFEACA--DPGAIAPF-SFGSLLGTQLILMGWVESKRWVDFFNP 132
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
S + + + ++ + GYPGG F+PL FA T
Sbjct: 133 ESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGT 173
>gi|115833|sp|P27524.1|CB4A_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10A,
chloroplastic; Short=CAB-10A; Short=LHCP; Flags:
Precursor
gi|170394|gb|AAA34143.1| a-binding protein [Solanum lycopersicum]
Length = 256
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 22/162 (13%)
Query: 49 AKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLG 102
AK W+P L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM
Sbjct: 51 AKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAA 110
Query: 103 VVGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKN 159
V+G+ + + ++ I W++AG A S TL + IL +VE +RW D +
Sbjct: 111 VLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFD 164
Query: 160 PGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
P S + + + ++ E GYPGG F+PL A T
Sbjct: 165 PDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGT 206
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 23/166 (13%)
Query: 62 YLNGSLPGDNGFDPLGLAEDPE------NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
YL+G+LPGD GFDPLG++ DPE N +W +E+++ RWAMLGV G++ PE+ +
Sbjct: 81 YLDGTLPGDFGFDPLGMS-DPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGGM 139
Query: 116 GII---NAPQWYDAGKA------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD 166
G+I W+ +G +Y+A+ T+F + + ++ EI+R QD PGS +
Sbjct: 140 GVIPESTGLVWFTSGAIPPQGTFDYWANPMTIFWVNMCMMNFAEIKRGQDYWFPGSQAET 199
Query: 167 PIF---KQYSLPPNEVGYPGGI-FNPLNFAPTDEA--KEKELANGN 206
P+ K + N YPGG FNP N D A ++KE+ NG
Sbjct: 200 PLLGWEKGFGGSGNPT-YPGGKWFNPFNLGKDDMASMQKKEVKNGR 244
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 97/185 (52%), Gaps = 35/185 (18%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPE------NLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
S +YL+G+LPGD GFDPLGL DPE + +W AE++N R+AMLG G + PEV
Sbjct: 31 SLSYLDGTLPGDYGFDPLGLM-DPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVL 89
Query: 113 TKIGII---NAPQWYDA------GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSV 163
+IG+I A W+ + G Y+A TLFV+E L + E RR QD PGS+
Sbjct: 90 GRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSM 149
Query: 164 NQDPIFKQYSLPPNEV-------GYPGG-IFNPLNFAPTD----EAKEKELANGNNS--A 209
KQY L + YPGG IFN L F + E K KE+ NG + A
Sbjct: 150 G-----KQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMA 204
Query: 210 KLAYF 214
L YF
Sbjct: 205 VLGYF 209
>gi|115458738|ref|NP_001052969.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|21740892|emb|CAD40888.1| OSJNBa0036B21.6 [Oryza sativa Japonica Group]
gi|113564540|dbj|BAF14883.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|125548549|gb|EAY94371.1| hypothetical protein OsI_16135 [Oryza sativa Indica Group]
gi|125548552|gb|EAY94374.1| hypothetical protein OsI_16138 [Oryza sativa Indica Group]
gi|215740813|dbj|BAG96969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 88/162 (54%), Gaps = 22/162 (13%)
Query: 47 VEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
V AK W+P S P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM
Sbjct: 45 VSAKKSWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM 104
Query: 101 LGVVGMLLPEVFTKIGIINAPQWYDAG-KAEYFA--SSSTLFVIEFILFHYVEIRRWQDI 157
V+G+ + + ++ + W++AG + E A S +L + +L +VE +RW D
Sbjct: 105 AAVLGIFVGQAWSGV------PWFEAGAQPEAIAPFSFGSLLGTQLLLMGWVESKRWVDF 158
Query: 158 KNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFA 192
NP S + + +S E GYPGG F+PL
Sbjct: 159 FNPDSQAVEWATPWSRTAENFSNATGEQGYPGGKFFDPLGLG 200
>gi|110377772|gb|ABG73416.1| chloroplast pigment-binding protein CP24 [Nicotiana tabacum]
Length = 257
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 105/211 (49%), Gaps = 33/211 (15%)
Query: 9 SAAVFRPCASKSRFLTG---SSGKLNREVALK------PVSSSASFKVEAKGEWLPG--- 56
SAAV +S FLTG S L VA + P + K W+P
Sbjct: 5 SAAVLNGLSSS--FLTGGKNSQALLGAPVAARIGGLATPKRCIVAAAAAPKKSWIPAVKG 62
Query: 57 ---LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ + + ++
Sbjct: 63 GGNLLDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWS 122
Query: 114 KIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD---- 166
I W++AG A S +L + +L +VE +RW D NP S + +
Sbjct: 123 GI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 176
Query: 167 --PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
+ ++ E GYPGG F+PL+ A T
Sbjct: 177 WSKTAENFANFTGEQGYPGGKFFDPLSLAGT 207
>gi|212275904|ref|NP_001130948.1| uncharacterized protein LOC100192053 [Zea mays]
gi|194690532|gb|ACF79350.1| unknown [Zea mays]
Length = 92
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 55/82 (67%)
Query: 100 MLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 159
MLG G+ +PE TKIG++N P WY AG+ +YF ++TLF+IE IL + E RRW DI
Sbjct: 1 MLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIK 60
Query: 160 PGSVNQDPIFKQYSLPPNEVGY 181
PGSVN DPIF L +VGY
Sbjct: 61 PGSVNTDPIFPSNKLTGTDVGY 82
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 90/177 (50%), Gaps = 34/177 (19%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEV 111
+S YL+G+LPGD GFDPLGL DP N KW +E+++ RWAMLG G + PE+
Sbjct: 53 SSLAYLDGTLPGDFGFDPLGLL-DPVNSGGFVEPKWLQYSEVIHGRWAMLGAAGCIAPEI 111
Query: 112 FTKIGIINAPQ---WYDAGKAE-------YFASSSTLFVIEFILFHYVEIRRWQDIKNPG 161
G+I WY++G Y+A T+F IE + + E+RR QD + PG
Sbjct: 112 LGAAGLIPEKTNIVWYESGVIPPAGSYDGYWADPYTIFFIEIVAMQFAELRRLQDFRYPG 171
Query: 162 SVNQDPIFKQYSLPPNEV-------GYPGG-IFNPLNFAPTD----EAKEKELANGN 206
S+ KQY L ++ YPGG FN N T+ E K KE+ NG
Sbjct: 172 SMG-----KQYFLGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGR 223
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 87/168 (51%), Gaps = 26/168 (15%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
KV A+ W+PG P +L G+LP D GFDPLGL ++P NL + +AE+++SRWAMLGV G
Sbjct: 33 KVSARAVWMPGSTPPAHLTGTLPCDYGFDPLGLGKEPANLARFQEAEIIHSRWAMLGVAG 92
Query: 106 MLLPEVFTKIGIINAP----QWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG 161
E T + I AP Q Y ++ + + IE + +VE +R
Sbjct: 93 AAGQEAITGVTWIEAPVQDSQTYLGAESPF--PLPVVVAIEVFVMAFVEQQR-------- 142
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNF---APTDEAKEKELANGN 206
S +DP + YPGG F+P F A + K+KE+ANG
Sbjct: 143 SNEKDPAKRL---------YPGGAFDPAGFSKGADFETLKKKEIANGR 181
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 94/183 (51%), Gaps = 33/183 (18%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPE-----------NLKWYVQAELVNSRWAMLGVVGM 106
A+ YL+G+LPGD GFDPLGL DP N +W +E++++RWAMLG G
Sbjct: 65 AALKYLDGTLPGDYGFDPLGLL-DPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGAAGC 123
Query: 107 LLPEVFTKIGII---NAPQWYDAG-------KAEYFASSSTLFVIEFILFHYVEIRRWQD 156
+ PE+ K G+I A W+ G +++A TLF IE + + E++R QD
Sbjct: 124 IAPEILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWADPFTLFFIEVVAIQFAELKRLQD 183
Query: 157 IKNPGSVNQ------DPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEKELANGNNSA 209
KNPGS ++ + +FK P YPGG FN NF T+ +K N +
Sbjct: 184 YKNPGSQSRQYFLGLEGLFKGSDNP----AYPGGPFFNFANFGKTEAEMKKLKLNEIKNG 239
Query: 210 KLA 212
+LA
Sbjct: 240 RLA 242
>gi|192764595|gb|ACF05841.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 94/177 (53%), Gaps = 18/177 (10%)
Query: 31 NREVALKPVSSSASFKVEAKGEWLPGL------ASPTYLNGSLPGDNGFDPLGLAEDPEN 84
+R V + ++ A+ + K W+P + P +L+GSLPGD GFDPLGL +DP
Sbjct: 2 SRSVGARKLTIVAA--AQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPTF 59
Query: 85 LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFI 144
LKWY +AEL++ RWAM VV + + + ++ I A D G F S +L + I
Sbjct: 60 LKWYREAELIHGRWAMAAVVSIFVGQAWSGIPWFEACA--DPGAIAPF-SFGSLLGTQLI 116
Query: 145 LFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
L +VE +RW D NP S + + + ++ + GYPGG F+PL FA T
Sbjct: 117 LMGWVESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGT 173
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 86/173 (49%), Gaps = 29/173 (16%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
+V EW+PG P +L+GS PGD GFDPL L PENL+ Y ++EL++ RWAML V G
Sbjct: 3 RVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPG 62
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDI 157
ML+PE + A +W +A YF + +EF+ +VE +R
Sbjct: 63 MLIPEALGLGNWVEAQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQR---- 118
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
N +P P + YPGG F+PL F+ E K KE+ NG
Sbjct: 119 ------NGEPD-------PEKRKYPGGAFDPLGFSKDPVKFKEYKVKEIKNGR 158
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 29/170 (17%)
Query: 49 AKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
+ EW PG P +L+GS PGD GFDPLGLA PEN + + ++E+ + RWAML V G+L+
Sbjct: 15 SSAEWFPGQPRPVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLV 74
Query: 109 PEVFTKIGIINAPQW--YDAGKAEYF------ASSSTLFVIEFILFHYVEIRRWQDIKNP 160
PE + A +W G+A YF + T+ IEF+ + E +R
Sbjct: 75 PEALGLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQR------- 127
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
++ +DP K+ YPGG F+PL F+ +E K KE+ NG
Sbjct: 128 -TMEKDPEKKK---------YPGGAFDPLGFSKDPVKLEEYKLKEIRNGR 167
Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
FDPLG ++DP L+ Y E+ N R AML VG +
Sbjct: 143 FDPLGFSKDPVKLEEYKLKEIRNGRLAMLAFVGFCV 178
>gi|192764591|gb|ACF05839.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764593|gb|ACF05840.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 22/164 (13%)
Query: 47 VEAKGEWLPGL------ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
+ K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM
Sbjct: 16 AQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 75
Query: 101 LGVVGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDI 157
VV + + + ++ I W++AG A S +L + IL +VE +RW D
Sbjct: 76 AAVVSIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDF 129
Query: 158 KNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
NP S + + + ++ + GYPGG F+PL FA T
Sbjct: 130 FNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGT 173
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 89/182 (48%), Gaps = 28/182 (15%)
Query: 35 ALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
A K S+ S V G WLPG +P YL+G LPG GFDP GL P NL+ + +AELV
Sbjct: 19 ATKLPKSNGSRVVMKAGNWLPGSDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELV 77
Query: 95 NSRWAMLGVVGMLLPEVFTKIGIINAPQW-YDAGKAEYFA-----SSSTLFVIEFILFHY 148
+SRWAM GV G L E+ + AP W + G Y + STL IEF+
Sbjct: 78 HSRWAMAGVAGALGAELLGQGDWYQAPLWAVNGGAPTYLGIPVPFNLSTLLAIEFVAIAG 137
Query: 149 VEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELAN 204
E +R N +P ++ YPGG F+PL F+ +E K KEL N
Sbjct: 138 AEAQR----------NAEPDAEKRK-------YPGGAFDPLGFSKDSKVLEENKLKELKN 180
Query: 205 GN 206
G
Sbjct: 181 GR 182
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 90/178 (50%), Gaps = 35/178 (19%)
Query: 66 SLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII- 118
SLPGD GFDPLGL+ DPE +W E++N R+AMLG G + PE+ K G+I
Sbjct: 14 SLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 119 --NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
A W+ AG Y+A + TLFV+E L + E RR QD NPGS+ K
Sbjct: 73 AETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMG-----K 127
Query: 171 QYSL-------PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
QY L YPGG FNPL F + E K KE+ NG + A L YF
Sbjct: 128 QYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 185
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G +P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 137 LAGSGNPAY-----PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVT 191
Query: 114 KIG 116
+G
Sbjct: 192 GVG 194
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 86/173 (49%), Gaps = 29/173 (16%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
+V EW+PG P +L+GS PGD GFDPL L PENL+ Y ++EL++ RWAML V G
Sbjct: 43 RVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPG 102
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDI 157
+L+PE + A +W +A Y + + +EF+ +VE +R
Sbjct: 103 VLIPEALGLGNWVEAQKWAAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQR---- 158
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
N +P P + YPGG F+PL F A E K KE+ NG
Sbjct: 159 ------NGEP-------DPEKRKYPGGAFDPLGFSKDPAKFKEYKVKEIKNGR 198
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 86/173 (49%), Gaps = 29/173 (16%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
+V EW+PG P +L+GS PGD GFDPLGL PENL+ Y ++EL++ RWAML V G
Sbjct: 43 RVSMSAEWMPGQPRPAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPG 102
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDI 157
+L+PE + A +W G+A Y + I F+ + E +R
Sbjct: 103 VLIPEALGLGNWVEAQKWAAIPGGQATYLGVPVPWGYFPIILSIFFLKMAFAESQR---- 158
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
N +P ++ YPGG F+PL F A +E K KE+ NG
Sbjct: 159 ------NGEPDLEKRK-------YPGGAFDPLGFSKDPAKFEEYKVKEIKNGR 198
>gi|168009690|ref|XP_001757538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168009894|ref|XP_001757640.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691232|gb|EDQ77595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691334|gb|EDQ77697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 219
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 24/182 (13%)
Query: 34 VALKPVSSSASFKVEAKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKW 87
+A K VS+ + K W+P L P +L+GSLPGD GFDPLGL DP LKW
Sbjct: 1 MATKKVSARPA--AGGKKSWIPAVKGGGNLTDPEWLDGSLPGDYGFDPLGLGRDPAALKW 58
Query: 88 YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAG---KAEYFASSSTLFVIEFI 144
Y +AEL++ RWAM VVG+ + + ++ + W++AG A S +L + +
Sbjct: 59 YREAELIHGRWAMAAVVGIFVGQGWSGV------PWFEAGADPAALAPFSFGSLLGTQLL 112
Query: 145 LFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEA 197
L +VE +RW D NPG+ + + + ++ GYPGG F+PL A + +
Sbjct: 113 LMGWVETKRWIDFLNPGTQSVEWATPWSRTAENFNNSTGLQGYPGGKFFDPLALAGSVQG 172
Query: 198 KE 199
+
Sbjct: 173 GQ 174
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 86/173 (49%), Gaps = 29/173 (16%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
+V EW+PG P +L+GS PGD GFDPL L PENL+ Y ++EL++ RWAML V G
Sbjct: 43 RVSMSDEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPG 102
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDI 157
+L+PE + A +W +A Y + + +EF+ +VE +R
Sbjct: 103 VLIPEALGLGNWVEAQKWAAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQR---- 158
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
N +P P + YPGG F+PL F A E K KE+ NG
Sbjct: 159 ------NGEP-------DPEKRKYPGGAFDPLGFSKDPAKFKEYKVKEIKNGR 198
>gi|359754921|gb|AEV59650.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis splendens]
Length = 201
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 75/137 (54%), Gaps = 21/137 (15%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE +W E++N R+AMLG G
Sbjct: 58 WFASEQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 116
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A + TLFV+E L + E RR QD
Sbjct: 117 IAPEILGKAGLIPEETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDW 176
Query: 158 KNPGSVNQDPIFKQYSL 174
NPGS+ KQY L
Sbjct: 177 YNPGSMG-----KQYFL 188
>gi|312281533|dbj|BAJ33632.1| unnamed protein product [Thellungiella halophila]
Length = 258
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 28/169 (16%)
Query: 43 ASFKVEAKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
A+ + K W+P L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++
Sbjct: 47 AAAAAQPKKSWIPAVKGGGNLLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHG 106
Query: 97 RWAMLGVVGMLLPEVFTKIGIINAPQWYDAG---KAEYFASSSTLFVIEFILFHYVEIRR 153
RWAM V+G+ + + ++ + W++AG +A S +L + +L +VE +R
Sbjct: 107 RWAMAAVLGIFVGQAWSGV------PWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKR 160
Query: 154 WQDIKNPGSVNQDPI---------FKQYSLPPNEVGYPGG-IFNPLNFA 192
W D NP S + + F Y+ + GYPGG F+PL A
Sbjct: 161 WVDFFNPDSQSVEWATPWSRTAENFANYT---GDQGYPGGRFFDPLGLA 206
>gi|195617280|gb|ACG30470.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|195639966|gb|ACG39451.1| chlorophyll a-b binding protein CP24 [Zea mays]
Length = 244
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 87/161 (54%), Gaps = 22/161 (13%)
Query: 50 KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K W+P + S P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 40 KKSWIPAIKSDAEIVNPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 99
Query: 104 VGMLLPEVFTKIGIINAPQWYDAG---KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + + ++ I W++AG A S +L + +L +VE +RW D NP
Sbjct: 100 LGIFVGQAWSGI------PWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 153
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
S + + ++ E GYPGG F+PL A T
Sbjct: 154 DSQAVEWATPWSRTAENFANFTGEQGYPGGKFFDPLGLAGT 194
>gi|242074752|ref|XP_002447312.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
gi|241938495|gb|EES11640.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
Length = 255
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 88/164 (53%), Gaps = 22/164 (13%)
Query: 47 VEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
V K W+P S P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM
Sbjct: 48 VAPKKSWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM 107
Query: 101 LGVVGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDI 157
V+G+ + + ++ I W++AG A S +L + +L +VE +RW D
Sbjct: 108 AAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDF 161
Query: 158 KNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
NP S + + + ++ E GYPGG F+PL A T
Sbjct: 162 FNPDSQSVEWATPWSRTAENFANFTGEQGYPGGKFFDPLGLAGT 205
>gi|145079837|tpg|DAA05940.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Micromonas sp. CCMP490]
Length = 233
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE--WLPGLA 58
MA +TT + AV +K++F S A VSS S V+A G WL A
Sbjct: 1 MAALTTSSVTAVCAVRGAKAKF--AGSRAAFAAPARTAVSSRTSLTVKAAGRDLWLRDSA 58
Query: 59 -SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
+P +L+G+LPGD GFDPLGL DP LK+Y +AEL+NSRWAM+ V G+ +
Sbjct: 59 VAPPHLDGTLPGDFGFDPLGLGADPARLKYYQEAELMNSRWAMMAVAGITTTDALN---- 114
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR 153
I P WY+AG +Y L ++F + +E++R
Sbjct: 115 IGGP-WYEAGAGDYDFPIPALLAVQFPVMGILELKR 149
>gi|388506818|gb|AFK41475.1| unknown [Lotus japonicus]
Length = 260
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 87/161 (54%), Gaps = 22/161 (13%)
Query: 50 KGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K W+P L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 56 KKSWIPAVKGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 115
Query: 104 VGMLLPEVFTKIGIINAPQWYDAG---KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + + ++ + W++AG A S +L + IL +VE +RW D NP
Sbjct: 116 LGIFVGQAWSGV------PWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNP 169
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
S + + + ++ + GYPGG F+PL A T
Sbjct: 170 DSQSVEWATPWSKTAENFANYTGDQGYPGGKFFDPLALAGT 210
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 29/165 (17%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
+PG P +L+GS PGD GFDPLGLA PEN + + ++E+ + RWAML V G+L+PE
Sbjct: 1 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALG 60
Query: 114 KIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
+ A +W G+A Y + T+ VIEF+ + E +R ++ +
Sbjct: 61 LGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR--------TMEK 112
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
DP K+ YPGG F+PL F A +E K KE+ NG
Sbjct: 113 DPEKKK---------YPGGAFDPLGFSKDPAKFEEYKLKEIKNGR 148
>gi|326487444|dbj|BAJ89706.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493456|dbj|BAJ85189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326529461|dbj|BAK04677.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 22/159 (13%)
Query: 50 KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K W+P S P++L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 51 KKSWIPAFKSDAEFINPSWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 110
Query: 104 VGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + + ++ + W++AG A S +L + +L +VE +RW D NP
Sbjct: 111 LGIFIGQAYSGV------PWFEAGAQPGAVAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 164
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFA 192
S + + + ++ E GYPGG F+PL
Sbjct: 165 DSQSVEWATPWSRTAENFANFTGEQGYPGGKFFDPLGLG 203
>gi|4741960|gb|AAD28777.1|AF134130_1 Lhcb6 protein [Arabidopsis thaliana]
Length = 258
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 22/166 (13%)
Query: 43 ASFKVEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
A+ + K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++
Sbjct: 47 AAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHG 106
Query: 97 RWAMLGVVGMLLPEVFTKIGIINAPQWYDAG-KAEYFA--SSSTLFVIEFILFHYVEIRR 153
RWAM V+G+ + + ++ + W++AG + + A S +L + +L +VE +R
Sbjct: 107 RWAMAAVLGIFVGQAWSGV------AWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKR 160
Query: 154 WQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFA 192
W D NP S + + + ++ + GYPGG F+PL A
Sbjct: 161 WVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLA 206
>gi|413919930|gb|AFW59862.1| chlorophyll a/b-binding apoprotein CP24 Precursor [Zea mays]
Length = 248
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 87/161 (54%), Gaps = 22/161 (13%)
Query: 50 KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K W+P + S P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 44 KKSWIPAIKSDAEIVNPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 103
Query: 104 VGMLLPEVFTKIGIINAPQWYDAG---KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + + ++ I W++AG A S +L + +L +VE +RW D NP
Sbjct: 104 LGIFVGQAWSGI------PWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 157
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
S + + ++ E GYPGG F+PL A T
Sbjct: 158 DSQAVEWATPWSRTAENFANFTGEQGYPGGKFFDPLGLAGT 198
>gi|15218330|ref|NP_173034.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
gi|8927661|gb|AAF82152.1|AC034256_16 Identical to Lhcb6 protein from Arabidopsis thaliana gb|AF134130
and is a member of the Chlorophyll A-B binding proteins
PF|00504. ESTs gb|AI100562, gb|AI999227, gb|AA067457,
gb|BE037598, gb|BE039058, gb|BE038945, gb|BE038657,
gb|BE038604, gb|H76294, gb|H77256, gb|N65776, gb|N38000,
gb|R90377, gb|R90578, gb|R90082, gb|T44923, gb|T76598,
gb|T04144, gb|T43786, gb|T76834, gb|T04153, gb|T45475,
gb|T76179, gb|T46781, gb|T45938, gb|T45430, gb|W43165,
gb|Z18774 come from this gene [Arabidopsis thaliana]
gi|12083258|gb|AAG48788.1|AF332425_1 putative chlorophyll binding protein [Arabidopsis thaliana]
gi|17473665|gb|AAL38289.1| Lhcb6 protein [Arabidopsis thaliana]
gi|20148631|gb|AAM10206.1| chlorophyll A-B binding protein [Arabidopsis thaliana]
gi|332191248|gb|AEE29369.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
Length = 258
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 22/166 (13%)
Query: 43 ASFKVEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
A+ + K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++
Sbjct: 47 AAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHG 106
Query: 97 RWAMLGVVGMLLPEVFTKIGIINAPQWYDAG-KAEYFA--SSSTLFVIEFILFHYVEIRR 153
RWAM V+G+ + + ++ + W++AG + + A S +L + +L +VE +R
Sbjct: 107 RWAMAAVLGIFVGQAWSGV------AWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKR 160
Query: 154 WQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFA 192
W D NP S + + + ++ + GYPGG F+PL A
Sbjct: 161 WVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLA 206
>gi|297850008|ref|XP_002892885.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
gi|297338727|gb|EFH69144.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 28/164 (17%)
Query: 48 EAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAML 101
+ K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM
Sbjct: 50 QPKKSWIPAVKGGGNFLDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 109
Query: 102 GVVGMLLPEVFTKIGIINAPQWYDAG-KAEYFA--SSSTLFVIEFILFHYVEIRRWQDIK 158
V+G+ + + ++ + W++AG + E A S +L + +L +VE +RW D
Sbjct: 110 AVLGIFVGQAWSGV------PWFEAGAQPEAIAPFSFGSLLGTQLLLMGWVESKRWVDFF 163
Query: 159 NPGSVNQD---------PIFKQYSLPPNEVGYPGG-IFNPLNFA 192
NP S + + F Y+ + GYPGG F+PL A
Sbjct: 164 NPDSQSVEWATPWSRTAENFANYT---GDQGYPGGRFFDPLGLA 204
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 23/167 (13%)
Query: 61 TYLNGSLPGDNGFDPLGLAEDPE------NLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
YL+G+LPGD GFDPLG++ DPE N +W +E+++ RWAMLGV G++ PE+ +
Sbjct: 73 AYLDGTLPGDFGFDPLGMS-DPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGQ 131
Query: 115 IGII---NAPQWYDAGKA------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
G+I W+ +G +Y+A+ T+F + + ++ EI+R QD PGS +
Sbjct: 132 AGLIPESTGLVWFTSGAIPPQGTFDYWANPMTIFWVNMCMMNFAEIKRGQDYWYPGSQAE 191
Query: 166 DPIF---KQYSLPPNEVGYPGG-IFNPLNFAPTDEAK--EKELANGN 206
P+ K ++ N YPGG FN D AK +KE+ NG
Sbjct: 192 QPLMGWEKGFAGSGNPA-YPGGKYFNFAGLGKDDMAKMQKKEIKNGR 237
>gi|50313237|gb|AAT74560.1| Lhcb6 protein [Brassica rapa subsp. pekinensis]
Length = 254
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 28/169 (16%)
Query: 43 ASFKVEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
A+ + K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++
Sbjct: 43 AAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHG 102
Query: 97 RWAMLGVVGMLLPEVFTKIGIINAPQWYDAG---KAEYFASSSTLFVIEFILFHYVEIRR 153
RWAM V+G+ + + ++ + W++AG +A S +L + +L +VE +R
Sbjct: 103 RWAMAAVLGIFVGQAWSGV------PWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKR 156
Query: 154 WQDIKNPGSVNQD---------PIFKQYSLPPNEVGYPGG-IFNPLNFA 192
W D NP S + + F Y+ + GYPGG F+PL A
Sbjct: 157 WVDFFNPDSQSVEWATPWSRTAENFANYT---GDQGYPGGRFFDPLGLA 202
>gi|159465641|ref|XP_001691031.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158279717|gb|EDP05477.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 246
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 37/185 (20%)
Query: 37 KPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
+P ++ + W PG +P +L+GS+ GD GFDPL L + +NLKW+ +AEL N
Sbjct: 15 RPSRATVRVSASTRPMWYPGATAPAHLDGSMLGDYGFDPLRLGVNKDNLKWFREAELTNG 74
Query: 97 RWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQD 156
RWAM VVG+L + + P+++ AG +Y + TL +IE +F +E +R++
Sbjct: 75 RWAMAAVVGILFTDA------VGLPKFWTAGAEKYALDNQTLALIEVAVFAVLEGKRYEI 128
Query: 157 IKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD-------EAKEKELANGNNSA 209
K G E G+ L+FAP D E K KEL NG A
Sbjct: 129 YKKTG----------------ETGF-------LSFAPFDPMGMKSEEMKLKELKNG-RLA 164
Query: 210 KLAYF 214
LA+
Sbjct: 165 MLAFL 169
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 103/209 (49%), Gaps = 30/209 (14%)
Query: 7 QASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGS 66
A+A V S + L S G + + A + V+ A+ + WLP P +LNG+
Sbjct: 1 MAAATVAMAGVSAAPLLKASFG-VKKATAARDVTVRAADRTL----WLPNTVPPAHLNGT 55
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA 126
LPGD G+DP+GLA DP+ L W+V+AE N RWAM GV G+L FT I + W+
Sbjct: 56 LPGDYGYDPIGLATDPDRLAWFVEAERTNGRWAMAGVAGIL----FTDALHIGSAPWFSI 111
Query: 127 G-KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI 185
G + E L IEF++F ++E++R + K G Q+ + +
Sbjct: 112 GAELESPIPLWGLATIEFVIFGFLEMKRLEGWKKTG---QNGLLNWFP------------ 156
Query: 186 FNPLNFAPTDEAKEKELANGNNSAKLAYF 214
F+PL + E KE+ NG +LA F
Sbjct: 157 FDPLGMN-SKEMMVKEVKNG----RLAMF 180
>gi|115834|sp|P27525.1|CB4B_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10B,
chloroplastic; Short=CAB-10B; Short=LHCP; Flags:
Precursor
gi|170400|gb|AAA34146.1| chlorophyll b-binding protein [Solanum lycopersicum]
Length = 256
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 109/215 (50%), Gaps = 33/215 (15%)
Query: 4 VTTQASAAVFRPCASKSRFLTG---SSGKLNREVALKPVSSSASFKVEA-----KGEWLP 55
+TT ++ AV +S FLTG + L V + V++ F V A K W+P
Sbjct: 1 MTTTSATAVLNGLSSS--FLTGGKKTQALLGAHVTAR-VTTPKRFVVAAAAVAPKKSWIP 57
Query: 56 G------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ +
Sbjct: 58 AVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVG 117
Query: 110 EVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD 166
+ ++ I W++AG A S +L + +L +VE +RW D + S + D
Sbjct: 118 QAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSID 171
Query: 167 ------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
+ ++ E GYPGG F+PL A T
Sbjct: 172 WATPWSKTAENFANFTGEQGYPGGKFFDPLALAGT 206
>gi|159480944|ref|XP_001698542.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
gi|158282282|gb|EDP08035.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
Length = 237
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 87/172 (50%), Gaps = 25/172 (14%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPEN-------LKWYVQAELVNSRWAMLGVVGM 106
LP ++S +YL+G+LPGD GFDPLGL DP N +W AE+V+ RWAMLG G
Sbjct: 12 LPSVSSLSYLDGTLPGDMGFDPLGLF-DPTNGSAGFMSQRWLHTAEVVHGRWAMLGAAGC 70
Query: 107 LLPEVFTKIGII---NAPQWYDAG-------KAEYFASSSTLFVIEFILFHYVEIRRWQD 156
L PE +I W+ G +Y + LF+I+ L VE RW +
Sbjct: 71 LAPEYLAHEKVIPKATGLLWFKTGFLPPVSAGFDYGLPVTALFLIQMGLMGTVESLRWAE 130
Query: 157 IKNPGSVNQDPIFKQ---YSLPPNEVG---YPGGI-FNPLNFAPTDEAKEKE 201
+ NPGS+ +P+ Q + +G YPGG+ FNPL T A +E
Sbjct: 131 LSNPGSLASNPLVPQPLARLIGTTRLGGGAYPGGLMFNPLGLGATRPAVMRE 182
>gi|307106621|gb|EFN54866.1| hypothetical protein CHLNCDRAFT_134943 [Chlorella variabilis]
Length = 268
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 84/171 (49%), Gaps = 19/171 (11%)
Query: 53 WLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
W PG + P YL+GSL GDNGFDPLGL PE L W V AE+ + R AM G G+LL
Sbjct: 50 WFPGNTAVVPDYLDGSLVGDNGFDPLGLGSSPEQLSWNVHAEVFHGRLAMTGCAGILLTS 109
Query: 111 VFTKIGIINAPQWYDAGKAEY----FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD 166
+ G + P+WY+AGK S L +L + E +R DI+NPGS
Sbjct: 110 LL-HAGGADVPEWYEAGKVYMEKNPNVSFGALVYSTIVLSGFAEFKRLNDIRNPGSQGSG 168
Query: 167 PI---FKQYSLPPNE-VGYP---GGIFNPLNF---APTDEAKEK--ELANG 205
+ FK P VG P G F+P+ +P K K E+ NG
Sbjct: 169 ILPEDFKGVGGPQGRTVGGPYVGGRFFDPMGLCRGSPEQTLKYKWNEIRNG 219
>gi|226501904|ref|NP_001141632.1| uncharacterized protein LOC100273752 [Zea mays]
gi|226531392|ref|NP_001148406.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|194705338|gb|ACF86753.1| unknown [Zea mays]
gi|195619056|gb|ACG31358.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|414584819|tpg|DAA35390.1| TPA: chlorophyll a-b binding protein CP24 isoform 1 [Zea mays]
gi|414584820|tpg|DAA35391.1| TPA: chlorophyll a-b binding protein CP24 isoform 2 [Zea mays]
Length = 253
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 87/161 (54%), Gaps = 22/161 (13%)
Query: 50 KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K W+P S P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 49 KKSWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
Query: 104 VGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + + ++ I W++AG A S +L + +L +VE +RW D NP
Sbjct: 109 LGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
S + + + ++ + GYPGG F+PL A T
Sbjct: 163 DSQSVEWATPWSRTAENFANFTGDQGYPGGKFFDPLGLAGT 203
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 88/175 (50%), Gaps = 35/175 (20%)
Query: 69 GDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---N 119
GD GFDPLGL+ DPE KW E++N R+AMLG VG + PE+ K G+I
Sbjct: 1 GDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAVGAIAPEILGKAGLIPAET 59
Query: 120 APQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYS 173
A W+ AG Y+A TLFV+E L + E RR+QD PGS+ KQY
Sbjct: 60 ALPWFQTGVIPPAGTYNYWADGYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYF 114
Query: 174 L-------PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
L + YPGG FNPL F + E K KE+ NG + A L YF
Sbjct: 115 LGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYF 169
>gi|359754927|gb|AEV59653.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis campestris subsp. johannensis]
Length = 197
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 74/137 (54%), Gaps = 21/137 (15%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE +W E++N R+AMLG G
Sbjct: 54 WFASEQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 112
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A + TLFV+E L + E R QD
Sbjct: 113 IAPEILGKAGLIPEETALPWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRXLQDW 172
Query: 158 KNPGSVNQDPIFKQYSL 174
NPGS+ KQY L
Sbjct: 173 YNPGSMG-----KQYFL 184
>gi|359754917|gb|AEV59648.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis arctobia]
Length = 198
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 74/137 (54%), Gaps = 21/137 (15%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE +W E++N R+AMLG G
Sbjct: 58 WFASEQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 116
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A + TLFV+E L + E R QD
Sbjct: 117 IAPEILGKAGLIPEETALPWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRXLQDW 176
Query: 158 KNPGSVNQDPIFKQYSL 174
NPGS+ KQY L
Sbjct: 177 YNPGSMG-----KQYFL 188
>gi|357163903|ref|XP_003579885.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Brachypodium distachyon]
Length = 256
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 22/159 (13%)
Query: 50 KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K W+P S P++L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 52 KKSWIPAFKSDAEFINPSWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 111
Query: 104 VGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + + ++ + W++AG A S +L + +L +VE +RW D NP
Sbjct: 112 LGIFVGQAYSGV------PWFEAGAQPGAVAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 165
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFA 192
S + ++ + GYPGG F+PL
Sbjct: 166 DSQAVEWATPWSRTADNFANSTGDQGYPGGKFFDPLGLG 204
>gi|145079211|tpg|DAA05904.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Acetabularia acetabulum]
Length = 202
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 73/133 (54%), Gaps = 17/133 (12%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSL GD GFDPLGL DPE +W AE++N RWAMLG G
Sbjct: 59 WFASEQSLSYLDGSLAGDFGFDPLGLL-DPEGAGGLVTPEWLKYAEIMNGRWAMLGAAGC 117
Query: 107 LLPEVFTKIGII---NAPQWYDAG-------KAEYFASSSTLFVIEFILFHYVEIRRWQD 156
+ PE K+G I A W+ +G Y+ SS T+F + L ++ E+RR QD
Sbjct: 118 IAPEFLGKLGAIPESTALIWWKSGVIPPAGDTDIYWGSSWTVFWVNACLMNFAELRRLQD 177
Query: 157 IKNPGSVNQDPIF 169
KNPGS+N+ +
Sbjct: 178 YKNPGSMNKQGLL 190
>gi|302833175|ref|XP_002948151.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300266371|gb|EFJ50558.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 247
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 24/169 (14%)
Query: 40 SSSASFKVEAKGE--WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSR 97
S + + +V A W PG +P +L+G++ GD GFDPL L +PE LKW+ +AEL N R
Sbjct: 17 SRATAVRVSASTRPMWYPGATAPKHLDGTMLGDYGFDPLRLGTNPEQLKWFREAELTNGR 76
Query: 98 WAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
WAM V G+L + ++ P+++ AG +Y + TL +IE +F +E +R+
Sbjct: 77 WAMAAVAGILFTD------LVGLPKFWLAGAEKYALDTPTLALIEVAVFAVLEGKRYDIY 130
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
K G S P F+PL ++E K KEL NG
Sbjct: 131 KKTGETG------FLSFAP---------FDPLGMK-SEEMKLKELKNGR 163
>gi|168046799|ref|XP_001775860.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672867|gb|EDQ59399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 83/157 (52%), Gaps = 29/157 (18%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVF 112
S +YL+G+LPGD GFDPLGL DPE +W AE++N R+AMLG G + PE+
Sbjct: 16 SLSYLDGTLPGDYGFDPLGLM-DPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEIL 74
Query: 113 TKIGII---NAPQWYDA------GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSV 163
+IG+I A W+ + G Y+A TLFV+E L + E RR QD PGS+
Sbjct: 75 GRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLELALMGFAEHRRAQDYYKPGSM 134
Query: 164 NQDPIFKQYSLPPNEV-------GYPGG-IFNPLNFA 192
KQY L + YPGG IFN L F
Sbjct: 135 G-----KQYFLGLEKFLGGSGNPAYPGGPIFNFLGFG 166
>gi|162461245|ref|NP_001105375.1| light harvesting chlorophyll a/b binding protein6 precursor [Zea
mays]
gi|733458|gb|AAA64416.1| chlorophyll a/b-binding apoprotein CP24 precursor [Zea mays]
Length = 247
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 22/161 (13%)
Query: 50 KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K W+P + S P +L+GSLPGD GFDPLGL +DP LKWY +A++++ RWAM V
Sbjct: 43 KKSWIPAIKSDAEIVNPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREADVIHGRWAMAAV 102
Query: 104 VGMLLPEVFTKIGIINAPQWYDAGKAEYFA---SSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + + ++ I W++AG S +L + +L +VE +RW D NP
Sbjct: 103 LGIFVGQAWSGI------PWFEAGADPTRIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 156
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
S + + ++ E GYPGG F+PL A T
Sbjct: 157 DSQAVEWATPWSRTAENFANFTGEQGYPGGKFFDPLALAGT 197
>gi|110224748|emb|CAL07974.1| chlorophyll a/b-binding protein, photosystem I [Platanus x
acerifolia]
Length = 167
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 8/125 (6%)
Query: 34 VALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAEL 93
VAL S+AS + +W+PG P YL+GS PGD GFDPL L PENL+ + ++EL
Sbjct: 30 VALPGACSNASTRFTMSADWMPGQPRPPYLDGSAPGDFGFDPLLLGAVPENLERFKESEL 89
Query: 94 VNSRWAMLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFIL 145
++ RWAML V G+L+PE + A +W G+A Y + T+ VIEF+
Sbjct: 90 IHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGYLPTILVIEFLA 149
Query: 146 FHYVE 150
+VE
Sbjct: 150 IAFVE 154
>gi|361068931|gb|AEW08777.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149940|gb|AFG56899.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149942|gb|AFG56901.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149943|gb|AFG56902.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149944|gb|AFG56903.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149945|gb|AFG56904.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149946|gb|AFG56905.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149947|gb|AFG56906.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149948|gb|AFG56907.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149949|gb|AFG56908.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149950|gb|AFG56909.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149951|gb|AFG56910.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149952|gb|AFG56911.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149953|gb|AFG56912.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149954|gb|AFG56913.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149955|gb|AFG56914.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
gi|383149956|gb|AFG56915.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
Length = 66
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 57/68 (83%), Gaps = 6/68 (8%)
Query: 24 TGSS-GKLNREVALKPVSSSA---SFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLA 79
TGSS +L R V +P S+ A SFKVEAKGEWLPGL+SP+YLNGSLPGDNGFDPLGLA
Sbjct: 1 TGSSVSRLARRV--RPGSNPAPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLA 58
Query: 80 EDPENLKW 87
EDPE+LKW
Sbjct: 59 EDPESLKW 66
>gi|403241542|gb|AFR32945.1| light-harvesting complex photosystem II, partial [Selaginella
martensii]
Length = 226
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 98/183 (53%), Gaps = 25/183 (13%)
Query: 26 SSGKLNREVALKPVSSSASFKVEAKGEWLPG------LASPTYLNGSLPGDNGFDPLGLA 79
S+G +A K +S+ S K WLPG L P++L+GSLPGD GFDPLGL
Sbjct: 1 SNGARVVAMATKKISAKPS---SGKKSWLPGVRAGGDLVDPSWLDGSLPGDYGFDPLGLG 57
Query: 80 EDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA---SSS 136
+DP LKWY +AE+++ RWAM V+G+ + + ++ + W++AG A S
Sbjct: 58 KDPAFLKWYREAEIIHGRWAMAAVLGIFVGQAWSGV------PWFEAGAAPGAVAPFSFG 111
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQD---PIFKQYSLPPNEV---GYPGG-IFNPL 189
+L + +L +VE +R+ D +PG+ + P + S N GYPGG F+PL
Sbjct: 112 SLLGTQLLLMGWVESKRYVDFFDPGTQALEWATPWSRTASNFGNSTGLQGYPGGKFFDPL 171
Query: 190 NFA 192
A
Sbjct: 172 RLA 174
>gi|543939|sp|P36494.1|CB4_SPIOL RecName: Full=Chlorophyll a-b binding protein CP24, chloroplastic;
Flags: Precursor
gi|437991|emb|CAA81105.1| 20 kDa protein of CP24 precursor protein [Spinacia oleracea]
Length = 261
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 22/161 (13%)
Query: 50 KGEWLPGLA------SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAML V
Sbjct: 57 KKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAV 116
Query: 104 VGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + + +T I W++AG A S TL + +L +VE +RW D +P
Sbjct: 117 LGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDP 170
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
S + + + +S E GYPGG F+PL+ A T
Sbjct: 171 DSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGT 211
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 82/173 (47%), Gaps = 36/173 (20%)
Query: 47 VEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGM 106
V G WLPG +P +L LPG+ GFDPL L +DP +LK + ++E+++ RWAMLGV G
Sbjct: 33 VMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGA 92
Query: 107 LLPEVFTKIGIINAPQW-YDAGKAEYFA-----SSSTLFVIEFILFHYVEIRRWQDIKNP 160
L E+ +AP W GKA +F +TL EF+ E +R
Sbjct: 93 LAVELLGYGNWYDAPLWAVTGGKATWFGIEVPFDLNTLLAFEFVAMAAAEGQR------- 145
Query: 161 GSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA----PTDEAKEKELANGN 206
N+ G YPGG F+PL FA E K KE+ NG
Sbjct: 146 ----------------NDAGGVIYPGGAFDPLGFAKDSSKAGELKLKEIKNGR 182
>gi|427338317|gb|AFY52157.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338319|gb|AFY52158.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338321|gb|AFY52159.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338323|gb|AFY52160.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338325|gb|AFY52161.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338327|gb|AFY52162.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338329|gb|AFY52163.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338331|gb|AFY52164.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338333|gb|AFY52165.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338335|gb|AFY52166.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338337|gb|AFY52167.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338339|gb|AFY52168.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338341|gb|AFY52169.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338343|gb|AFY52170.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338345|gb|AFY52171.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338347|gb|AFY52172.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338349|gb|AFY52173.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338351|gb|AFY52174.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338353|gb|AFY52175.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338355|gb|AFY52176.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338357|gb|AFY52177.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338359|gb|AFY52178.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338361|gb|AFY52179.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338363|gb|AFY52180.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338365|gb|AFY52181.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338367|gb|AFY52182.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338369|gb|AFY52183.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338371|gb|AFY52184.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338373|gb|AFY52185.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338375|gb|AFY52186.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338383|gb|AFY52190.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338385|gb|AFY52191.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338387|gb|AFY52192.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338389|gb|AFY52193.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338391|gb|AFY52194.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338393|gb|AFY52195.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338395|gb|AFY52196.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338397|gb|AFY52197.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338399|gb|AFY52198.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338401|gb|AFY52199.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338403|gb|AFY52200.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338405|gb|AFY52201.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338407|gb|AFY52202.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338409|gb|AFY52203.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338411|gb|AFY52204.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338413|gb|AFY52205.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338415|gb|AFY52206.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338417|gb|AFY52207.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338419|gb|AFY52208.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338421|gb|AFY52209.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338423|gb|AFY52210.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338425|gb|AFY52211.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338427|gb|AFY52212.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338429|gb|AFY52213.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338431|gb|AFY52214.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338433|gb|AFY52215.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338435|gb|AFY52216.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338437|gb|AFY52217.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338439|gb|AFY52218.1| chlorophyll binding protein, partial [Clermontia oblongifolia
subsp. oblongifolia]
gi|427338441|gb|AFY52219.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338443|gb|AFY52220.1| chlorophyll binding protein, partial [Clermontia peleana]
gi|427338445|gb|AFY52221.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338447|gb|AFY52222.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338449|gb|AFY52223.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338451|gb|AFY52224.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338453|gb|AFY52225.1| chlorophyll binding protein, partial [Clermontia drepanomorpha]
gi|427338455|gb|AFY52226.1| chlorophyll binding protein, partial [Clermontia lindseyana]
gi|428230858|gb|AFY99051.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|428230860|gb|AFY99052.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 197
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 86/172 (50%), Gaps = 35/172 (20%)
Query: 72 GFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQ 122
GFDPLGL+ DPE KW E+ N R+AMLG VG + PE+F K+G+I A
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALP 59
Query: 123 WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-- 174
W+ AG Y+A TLFV E L + E RR QD NPGS+ KQY L
Sbjct: 60 WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMG-----KQYFLGL 114
Query: 175 -----PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
+ YPGG FNPL F + E K KE+ NG + A L YF
Sbjct: 115 EKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 166
>gi|427338377|gb|AFY52187.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338379|gb|AFY52188.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338381|gb|AFY52189.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|428230862|gb|AFY99053.1| chlorophyll binding protein, partial [Clermontia fauriei]
Length = 197
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 86/172 (50%), Gaps = 35/172 (20%)
Query: 72 GFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQ 122
GFDPLGL+ DPE KW E+ N R+AMLG VG + PE+F K+G+I A
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALP 59
Query: 123 WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-- 174
W+ AG Y+A TLFV E L + E RR QD NPGS+ KQY L
Sbjct: 60 WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMG-----KQYFLGL 114
Query: 175 -----PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
+ YPGG FNPL F + E K KE+ NG + A L YF
Sbjct: 115 EKGFAGSGDPAYPGGPFFNPLGFGKDETSMKELKLKEIKNGRLAMLAILGYF 166
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 86/172 (50%), Gaps = 35/172 (20%)
Query: 72 GFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQ 122
GFDPLGL+ DPE KW E++N R+AMLG G + PE+F K+G+I A
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALP 59
Query: 123 WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-- 174
W+ AG Y+A TLFV E L + E RR QD NPGS+ KQY L
Sbjct: 60 WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMG-----KQYFLGL 114
Query: 175 -----PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
+ YPGG FNPL F + E K KE+ NG + A L YF
Sbjct: 115 EKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 166
>gi|428230864|gb|AFY99054.1| chlorophyll binding protein, partial [Cyanea asplenifolia]
Length = 197
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 86/172 (50%), Gaps = 35/172 (20%)
Query: 72 GFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQ 122
GFDPLGL+ DPE KW E++N R+AMLG G + PE+F K+G+I A
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALP 59
Query: 123 WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-- 174
W+ AG Y+A TLFV E L + E RR+QD NPGS+ KQY L
Sbjct: 60 WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRFQDWYNPGSMG-----KQYFLGL 114
Query: 175 -----PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
YPGG FNPL F + E K KE+ NG + A L YF
Sbjct: 115 EKGLAGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 166
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G +P Y PG F+PLG +D +++K E+ N R AML ++G + + T
Sbjct: 118 LAGSGNPAY-----PGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVT 172
Query: 114 KIG 116
+G
Sbjct: 173 GVG 175
>gi|225447745|ref|XP_002263201.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Vitis vinifera]
gi|147804704|emb|CAN71620.1| hypothetical protein VITISV_015544 [Vitis vinifera]
Length = 257
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 22/161 (13%)
Query: 50 KGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K WLPG L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 53 KKSWLPGVKAGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 112
Query: 104 VGMLLPEVFTKIGIINAPQWYDAGKAEYFA---SSSTLFVIEFILFHYVEIRRWQDIKNP 160
VG+ + + ++ I W++AG A S TL + +L +VE +RW D NP
Sbjct: 113 VGIFVGQAWSGI------PWFEAGAAPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFNP 166
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
S + + + ++ E GYPGG F+PL+ A T
Sbjct: 167 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLSLAGT 207
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 32/172 (18%)
Query: 61 TYLNGSLPGDNGFDPLGLAEDPE--------NLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+YL GSLPGD G+DPL LA+ + +++W AE+++ RWAMLG G L PEV
Sbjct: 127 SYLTGSLPGDFGWDPLHLADTNDQDRLNNAMSMEWLSYAEVIHGRWAMLGAAGALSPEVL 186
Query: 113 TKIGII---NAPQWYDAGKA-----------------EYFASSSTLFVIEFILFHYVEIR 152
K G+I W+ AG +Y+ TL + + E R
Sbjct: 187 GKAGVIPKETGLTWFQAGGLDSSSNLIAVPFTGPIPFQYWTDQYTLLFTMLVAMGFAETR 246
Query: 153 RWQDIKNPGSVNQDPI--FKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKEL 202
RWQ+ K PGSV + ++ + P + YPGG F NFA EK++
Sbjct: 247 RWQEYKEPGSVQKQFFLGLEKLTPPSQQPAYPGGGF--FNFAGLGAKDEKQM 296
>gi|383149941|gb|AFG56900.1| Pinus taeda anonymous locus CL1595Contig1_05 genomic sequence
Length = 66
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%), Gaps = 6/68 (8%)
Query: 24 TGSS-GKLNREVALKPVSS---SASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLA 79
TGSS +L R V +P S+ + SFKVEAKGEWLPGL+SP+YLNGSLPGDNGFDPLGLA
Sbjct: 1 TGSSVSRLARRV--RPGSNPTPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLA 58
Query: 80 EDPENLKW 87
EDPE+LKW
Sbjct: 59 EDPESLKW 66
>gi|384246702|gb|EIE20191.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 230
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 5/113 (4%)
Query: 49 AKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
A+G WLP P +L G L GD GFDPLGL +PE LKWY +AE N RWAM GV G+L
Sbjct: 34 ARGLWLPDTEPPAHLKGELAGDRGFDPLGLGSEPERLKWYTEAEKTNGRWAMAGVAGILG 93
Query: 109 PEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG 161
E+ +G+ P+W++AG +Y L +EF+L ++E++R+Q K G
Sbjct: 94 QEL---LGV--QPKWFEAGAKDYGFPPLALISLEFLLLGFLELKRYQGFKKTG 141
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 90/178 (50%), Gaps = 29/178 (16%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPE------NLKWYVQAELVNSRWAMLGVVGMLLPE-- 110
S +YL+G+LPGD GFDPLGL+ DPE N W AE+++ RWAMLGV G PE
Sbjct: 74 SLSYLDGTLPGDYGFDPLGLS-DPEGAGGFINPGWLAYAEVIHGRWAMLGVAGATAPETM 132
Query: 111 ----------VFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
V+ K GII A YD ++A + LF + + ++VEI R + NP
Sbjct: 133 KGFIPDSTAVVWFKNGIIPAQGSYD-----FWAPPTALFWVMVCMMNFVEINRLTEYANP 187
Query: 161 GSVNQDPI--FKQYSLPPNEVGYPGGIFNPLNFAPT--DEAKEKELANGNNSAKLAYF 214
G + + ++ YPGG FNP+ D K KE+ NG A +A+F
Sbjct: 188 GFRTKQSLAGLEKGMGGTGNPAYPGGSFNPMGMGKNDMDAMKVKEIKNG-RLAMMAFF 244
>gi|308804351|ref|XP_003079488.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029297|gb|AAY27547.1| chloroplast light-harvesting complex I protein precursor Lhca5
[Ostreococcus tauri]
gi|116057943|emb|CAL54146.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 212
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 22/156 (14%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P +L+GS+ GD GFDPLGL +P+ LK+Y +AEL+N+RWAM+ V G++ EV GI
Sbjct: 36 APAHLDGSIAGDYGFDPLGLGTNPDRLKYYQEAELMNARWAMMAVAGIVGTEV---AGI- 91
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
P+W++AG +Y + L I+F + Y+E +R Q GS + F
Sbjct: 92 -EPRWWEAGTEDYGFPPAALLAIQFPVMGYLENKRIQGWMATGSSGVNETFP-------- 142
Query: 179 VGYPGGIFNPLNFAPTD-EAKEKELANGNNSAKLAY 213
F+P+ D K KE+ NG +A +A+
Sbjct: 143 -------FDPMGMGSKDANMKLKEIKNG-RAAMIAF 170
>gi|302808848|ref|XP_002986118.1| light-harvesting complex [Selaginella moellendorffii]
gi|302815978|ref|XP_002989669.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142640|gb|EFJ09339.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146266|gb|EFJ12937.1| light-harvesting complex [Selaginella moellendorffii]
Length = 259
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 40/183 (21%)
Query: 31 NREVALKPVSSSASFKVEAKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPEN 84
R+++ KP S S WLPG L P +L+GSLPGD GFDPLGL +DP
Sbjct: 44 TRKISAKPASGKKS--------WLPGVRGGGDLVDPEWLDGSLPGDYGFDPLGLGKDPAF 95
Query: 85 LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA---SSSTLFVI 141
LKWY +AEL++ RWAM VVG+ + + ++ I W++AG A S +L
Sbjct: 96 LKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGAAPGAVAPFSFGSLLGT 149
Query: 142 EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV-----------GYPGG-IFNPL 189
+ +L +VE +R+ D P N + +++ P + GYPGG F+PL
Sbjct: 150 QLLLMGWVESKRYVDFFEP---NTQAV--EWATPWSRTAVNFANSTGLQGYPGGKFFDPL 204
Query: 190 NFA 192
A
Sbjct: 205 RLA 207
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 83/165 (50%), Gaps = 30/165 (18%)
Query: 51 GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
G WLPG +P +L LPG+ GFDPL L +DP +LK + ++E+++ RWAMLGV G L E
Sbjct: 1 GNWLPGSDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVE 60
Query: 111 VFTKIGIINAPQW-YDAGKAEYFASS-----STLFVIEFILFHYVEIRRWQDIKNPGSVN 164
+ +AP W + GKA +F +TL EF+ E +R + G V
Sbjct: 61 LLGYGNWYDAPLWAVNGGKATWFGIDVPFDLNTLLAFEFVAMAAAEGQR----GDAGGVV 116
Query: 165 QDPIFKQYSLPPNEVGYPGGIFNPLNFA----PTDEAKEKELANG 205
YPGG F+PL FA + E K KE+ NG
Sbjct: 117 ----------------YPGGAFDPLGFAKDASKSGELKLKEVKNG 145
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 88/186 (47%), Gaps = 33/186 (17%)
Query: 31 NREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQ 90
R VA S + K G WLPG +P +L LPG+ GFDPL L ++P +LK + +
Sbjct: 20 GRRVAAVSNGSRVTMKA---GNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTE 76
Query: 91 AELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW-YDAGKAEYFA-----SSSTLFVIEFI 144
+E+++ RWAMLGV G L E+ +AP W + GKA +F + L EF+
Sbjct: 77 SEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFV 136
Query: 145 LFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA----PTDEAKEK 200
E +R + G V YPGG F+PL FA + E K K
Sbjct: 137 AMAAAEGQR----GDAGGVV----------------YPGGAFDPLGFAKDSSKSGELKLK 176
Query: 201 ELANGN 206
E+ NG
Sbjct: 177 EIKNGR 182
>gi|145346713|ref|XP_001417828.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144578056|gb|ABO96121.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 185
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 23/163 (14%)
Query: 53 WLPG-LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
WLP +P +L+G++ GD GFDPLGL DP LK+Y +AEL+N+RWAM+ V G+ V
Sbjct: 2 WLPAPYKAPAHLDGTVAGDYGFDPLGLGSDPTRLKYYQEAELMNARWAMMAVAGI----V 57
Query: 112 FTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
T+I I P+W++AG +Y L ++ + Y+E +R Q GS + F
Sbjct: 58 GTEIAGIE-PRWWEAGTEDYGFPPQALLAVQLPVMGYLENKRIQGWLATGSSGVNETFP- 115
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDE-AKEKELANGNNSAKLAY 213
F+P+ DE K KE+ NG +A +A+
Sbjct: 116 --------------FDPMGMGSKDEKMKLKEIKNG-RAAMIAF 143
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 96/204 (47%), Gaps = 36/204 (17%)
Query: 13 FRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNG 72
R ++++ G SG R VA S + K G WLPG +P +L LPG+ G
Sbjct: 5 MRTLSARTAAPRGFSG---RRVAAVSNGSRVTMKA---GNWLPGSDAPAWLPDDLPGNYG 58
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW-YDAGKAEY 131
FDPL L ++P +LK + ++E+++ RWAMLGV G L E+ +AP W + GKA +
Sbjct: 59 FDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATW 118
Query: 132 FA-----SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
F + L EF+ E +R + G V YPGG F
Sbjct: 119 FGIEVPFDLNALLAFEFVAMAAAEGQR----GDAGGVV----------------YPGGAF 158
Query: 187 NPLNFA----PTDEAKEKELANGN 206
+PL FA + E K KE+ NG
Sbjct: 159 DPLGFAKDSSKSGELKLKEIKNGR 182
>gi|359754919|gb|AEV59649.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis maydelliana]
Length = 186
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 69/129 (53%), Gaps = 16/129 (12%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE +W E++N R+AMLG G
Sbjct: 46 WFASEQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAXGA 104
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE+ K G+I A W+ AG Y+A + TLFV E L E R QD
Sbjct: 105 IAPEILGKAGLIPEETALPWFQTGVIPPAGTYNYWADNYTLFVXEMALMGXAEHRXLQDW 164
Query: 158 KNPGSVNQD 166
NPGS+ +
Sbjct: 165 XNPGSMGKQ 173
>gi|145079374|tpg|DAA05912.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Acetabularia acetabulum]
Length = 229
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 5 TTQASAAVFRPCA--SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTY 62
T Q +A RPC +K R + G + A +K + W PG P +
Sbjct: 6 TRQVTA---RPCVVTNKPRNIVGGRRATQK--------ICAEWKDVRESMWYPGATPPAH 54
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQ 122
L+ ++PGD GFDPL L + E L WY +AEL N RWAM+ V G+L + F P+
Sbjct: 55 LDSTMPGDYGFDPLRLGTNTELLPWYREAELTNGRWAMMAVAGILFTDAF------GLPK 108
Query: 123 WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYP 182
++ AG +Y + L IE L +E +R++ K G F
Sbjct: 109 FWLAGAEKYAIGFAPLVAIEIALMAVLEYQRFKGWKETGKSGFLAFFP------------ 156
Query: 183 GGIFNPLNFAPTDEAKEKELANGN 206
F+PLN A +DE KE+ NG
Sbjct: 157 ---FDPLNMA-SDEMAFKEIKNGR 176
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 96/204 (47%), Gaps = 36/204 (17%)
Query: 13 FRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNG 72
R ++++ G SG R VA S + K G WLPG +P +L LPG+ G
Sbjct: 1 MRTLSARTAAPRGFSG---RRVAAVSNGSRVTMKA---GNWLPGSDAPAWLPDDLPGNYG 54
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW-YDAGKAEY 131
FDPL L ++P +LK + ++E+++ RWAMLGV G L E+ +AP W + GKA +
Sbjct: 55 FDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATW 114
Query: 132 FA-----SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
F + L EF+ E +R + G V YPGG F
Sbjct: 115 FGIEVPFDLNALLAFEFVAMAAAEGQR----GDAGGVV----------------YPGGAF 154
Query: 187 NPLNFA----PTDEAKEKELANGN 206
+PL FA + E K KE+ NG
Sbjct: 155 DPLGFAKDSSKSGELKLKEIKNGR 178
>gi|149390623|gb|ABR25329.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 92
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
Query: 157 IKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
IKNPG VNQDPIFK YSLPP+E GYPG +FNPLNF PT EAKEKELANG A LA+
Sbjct: 1 IKNPGCVNQDPIFKSYSLPPHECGYPGSVFNPLNFEPTLEAKEKELANG-RLAMLAFL 57
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 100/213 (46%), Gaps = 42/213 (19%)
Query: 28 GKLNREVALKPVSSSASFKVEAKGEWLPGLA------SPTYLNGSLPGDNGFDPLGLAED 81
G+L+REV+ + A+ VE GE P +P YL G PGD G+D GL+ D
Sbjct: 69 GELSREVSCV-MGVKAACNVEWYGENRPKYLGPFQSYTPAYLTGEFPGDYGWDSAGLSAD 127
Query: 82 PENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKA------EYFA-- 133
P K Y + E++++RWAMLG +G + PE+ G N P W+ AG +Y
Sbjct: 128 PLTFKGYRETEVIHARWAMLGALGCIFPELLNSAG-FNLPVWFKAGGTIFENGIDYLGNP 186
Query: 134 ------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFN 187
S+ + ++ +L E R+ N P+ + P +V YPGG F+
Sbjct: 187 NLVHAQSALAVLSVQVVLMGASEAYRF---------NGGPLGE-----PADVLYPGGAFD 232
Query: 188 PLNFA----PTDEAKEKELANGN--NSAKLAYF 214
PL FA E K KE+ NG +A L Y+
Sbjct: 233 PLGFAKDPSKAAELKVKEIKNGRLAMTAMLGYY 265
>gi|33772151|gb|AAQ54512.1| chlorophyll a/b-binding protein type I [Malus x domestica]
Length = 147
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPL 76
+SKS+F T + V L + ++AS + EW+PG P YL+GS PGD GFDPL
Sbjct: 22 SSKSKFATSA-------VQLPSIGANASSRFSMSAEWMPGEPRPPYLDGSAPGDFGFDPL 74
Query: 77 GLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYF 132
L E PENL+ + ++EL++ RWAML V G+L+PE + A +W G+A Y
Sbjct: 75 RLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYL 132
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 22/161 (13%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
LP + +P YL+G++ GD GFDPLGL DPE LK+Y +AEL+N+RWAM+ V G+ E
Sbjct: 50 LPNIKTPDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAELMNARWAMMAVAGICTTEA-- 107
Query: 114 KIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYS 173
+GI +WY AG+ +Y + + F ++E +R G + F
Sbjct: 108 -LGI--QSKWYMAGQEDYGFPINAQLAVLFPTMGFLETKRITGWLATGKSGINETFP--- 161
Query: 174 LPPNEVGYPGGIFNPLNF-APTDEAKEKELANGNNSAKLAY 213
F+PL A +D K KE+ NG +A +A+
Sbjct: 162 ------------FDPLGMGADSDSMKLKEIKNG-RAAMIAF 189
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 81/153 (52%), Gaps = 29/153 (18%)
Query: 66 SLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW-- 123
S PGD GFDPLGL E P NL+ Y ++EL++ RWAML V G+L+PE + A +W
Sbjct: 1 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 60
Query: 124 YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
G+A Y + + T+ IEF+ +VE +R S+ +DP K+Y
Sbjct: 61 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKDPEKKKY----- 107
Query: 178 EVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
PGG F+PL ++ +E K KE+ NG
Sbjct: 108 ----PGGAFDPLGYSKDPKKLEELKVKEIKNGR 136
>gi|223948005|gb|ACN28086.1| unknown [Zea mays]
Length = 163
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 94 VNSRWAMLGVVGMLLPEVFTKIGIINAP-QWYDAGKAEYFASSSTLFVIEFILFHYVEIR 152
++ RWAML G+L+P++ + G I+A W+DAG EYFA TLFV + L + E R
Sbjct: 1 MHGRWAMLAAAGILVPDLLARWGFIDAGFSWFDAGSREYFADPWTLFVSQMALMGWAEGR 60
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA-----PTDEAKEKELANGN 206
RW D PG V+ +P F P +VGYPGG+ F+ N+ P + KE+ NG
Sbjct: 61 RWADYLRPGCVDIEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGR 120
>gi|159138869|gb|ABW89437.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 128
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 68/123 (55%), Gaps = 21/123 (17%)
Query: 67 LPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII-- 118
LPGD GFDPLGL+ DPE KW E++N R+AMLG G + PE+F K+G+I
Sbjct: 1 LPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPA 59
Query: 119 -NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
A W+ AG +Y+A TLFV E L + E RR QD NPGS+ KQ
Sbjct: 60 ETALPWFKTGVIPPAGTYDYWADPFTLFVFEMALMGFAEHRRLQDWYNPGSMG-----KQ 114
Query: 172 YSL 174
Y L
Sbjct: 115 YFL 117
>gi|30694146|ref|NP_850705.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645784|gb|AEE79305.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 207
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 10/122 (8%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
++ W+PG P YL+GS PGD GFDPLGL E P NL+ Y ++EL++ RWAML V G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDI 157
+L+PE + A +W G+A Y + + T+ IEF+ + E++ ++I
Sbjct: 101 ILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAF-ELKV-KEI 158
Query: 158 KN 159
KN
Sbjct: 159 KN 160
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 84/173 (48%), Gaps = 34/173 (19%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL++ PE+ Y EL+++RWAMLG G +LPE F K G +
Sbjct: 68 PAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLGAAGFVLPEAFNKFGAVC 127
Query: 120 APQ--WYDAG-------KAEYFASS-----STLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
P+ W+ G +YF ++ + + E IL E R S N+
Sbjct: 128 GPEAVWWKTGALLLEGDSIKYFGATVPINLAAAVIAEVILVGGAEYYR--------STNK 179
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
D Y L + +PGG F+PL A + K KE+ NG +LA F
Sbjct: 180 D----VYGLQDLDRLHPGGAFDPLGLAKDPDQFALLKVKEIKNG----RLAMF 224
>gi|159138839|gb|ABW89422.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138841|gb|ABW89423.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138843|gb|ABW89424.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138845|gb|ABW89425.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138847|gb|ABW89426.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138849|gb|ABW89427.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138851|gb|ABW89428.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138853|gb|ABW89429.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138855|gb|ABW89430.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138857|gb|ABW89431.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138859|gb|ABW89432.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138861|gb|ABW89433.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138863|gb|ABW89434.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138865|gb|ABW89435.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138867|gb|ABW89436.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138871|gb|ABW89438.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138873|gb|ABW89439.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138875|gb|ABW89440.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 128
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 67/123 (54%), Gaps = 21/123 (17%)
Query: 67 LPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
LPGD GFDPLGL DPE KW E++N R+AMLG G + PE+F K+G+I A
Sbjct: 1 LPGDYGFDPLGLX-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPA 59
Query: 121 PQ---WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y+A TLFV E L + E RR QD NPGS+ KQ
Sbjct: 60 ETALPWFKTGVIPPAGTYDYWADPFTLFVFEMALMGFAEHRRLQDWYNPGSMG-----KQ 114
Query: 172 YSL 174
Y L
Sbjct: 115 YFL 117
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 81/150 (54%), Gaps = 29/150 (19%)
Query: 69 GDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW--YDA 126
GD GFDPLGL E PENL+ Y ++EL++ RWAML V G+L+PE + A +W
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGFGNWVKAQEWAAVPG 60
Query: 127 GKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
G+A Y + + T+ VIEF+ +VE +R S+ +DP ++Y
Sbjct: 61 GQATYLGNPVPWGTLPTILVIEFLAIAFVEHQR--------SMEKDPEKRKY-------- 104
Query: 181 YPGGIFNPLNFAPT----DEAKEKELANGN 206
PGG F+PL ++ +E K KE+ NG
Sbjct: 105 -PGGAFDPLGYSKDPKKFEELKVKEIKNGR 133
>gi|30694148|ref|NP_850706.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645786|gb|AEE79307.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 164
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 9/117 (7%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
++ W+PG P YL+GS PGD GFDPLGL E P NL+ Y ++EL++ RWAML V G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEY------FASSSTLFVIEFIL-FHYVEIRR 153
+L+PE + A +W G+A Y + + T+ IEF+ ++ RR
Sbjct: 101 ILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAHLTLLDTRR 157
>gi|242070955|ref|XP_002450754.1| hypothetical protein SORBIDRAFT_05g017165 [Sorghum bicolor]
gi|241936597|gb|EES09742.1| hypothetical protein SORBIDRAFT_05g017165 [Sorghum bicolor]
Length = 88
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 47/58 (81%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
WLPGL P +L+G+LPGD GFDPLGL EDP +LKWYVQAELV+ R+AM GV G+L +
Sbjct: 31 WLPGLDPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVAGILFTD 88
>gi|307106432|gb|EFN54678.1| hypothetical protein CHLNCDRAFT_31627 [Chlorella variabilis]
Length = 246
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 37 KPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGL-AEDPENLKWYVQAELVN 95
+P +S+ A+ W PG P +L+GS+ GD GFDPL L ++D + LK+Y + EL N
Sbjct: 19 RPTRASSVVVAAARPTWYPGATPPKHLDGSMLGDYGFDPLRLGSKDKDVLKYYREGELTN 78
Query: 96 SRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQ 155
RWAM V G+L ++ +G+ P W K E TL ++E + F +E R +
Sbjct: 79 GRWAMAAVAGILFTDL---VGL--GPWWEAGAKVESSFDLKTLIIVEIVTFAILEGFRAK 133
Query: 156 DIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
+ G P F+PLN +DE + KEL NG
Sbjct: 134 AYEKTGETGLGPFAP---------------FDPLNMR-SDETRLKELKNGR 168
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 29/178 (16%)
Query: 41 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
++ S +V EW PG P +L GS P PLGLA PEN + + ++E+ + RWAM
Sbjct: 12 ATTSGRVTMSAEWFPGQPRPAHLAGSSPRGLRVRPLGLATVPENFERFKESEIYHCRWAM 71
Query: 101 LGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIR 152
L V G+L+PE + A +W G+A Y + T+ IEF+ + E +
Sbjct: 72 LCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQ 131
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
R ++ +DP K+ YPGG F+PL F A +E K KE+ NG
Sbjct: 132 R--------TMEKDPEKKK---------YPGGAFDPLGFSKDPAKFEELKLKEIKNGR 172
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 30/173 (17%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
++P+YL G PGD G+D GLA DP Y +AEL+++RWAMLG +G++ PE K G+
Sbjct: 155 STPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGV 214
Query: 118 -INAPQWYDAGKA-------EYFASSSTLF---VIEFILFHYVEIRRWQDIK-NPGSVNQ 165
+ P W+ AG +Y +S+ + ++ + F V + + + N G + +
Sbjct: 215 PLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGE 274
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
D ++ YPGG F+PL A E K KEL NG +LA F
Sbjct: 275 D----------SDALYPGGAFDPLGLADDPETFAELKVKELKNG----RLAMF 313
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 30/173 (17%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
++P+YL G PGD G+D GLA DP Y +AEL+++RWAMLG +G++ PE K G+
Sbjct: 395 STPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGV 454
Query: 118 -INAPQWYDAGKA-------EYFASSSTLF---VIEFILFHYVEIRRWQDIK-NPGSVNQ 165
+ P W+ AG +Y +S+ + ++ + F V + + + N G + +
Sbjct: 455 PLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGE 514
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
D ++ YPGG F+PL A E K KEL NG +LA F
Sbjct: 515 D----------SDALYPGGAFDPLGLADDPETFAELKVKELKNG----RLAMF 553
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 54 LPGLASPTYLNGSLPGDN--------GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
L GLA +NG G++ FDPLGLA+DPE EL N R AM + G
Sbjct: 18 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 77
Query: 106 MLLPEVFTKIGII 118
+ + T G +
Sbjct: 78 FYVQALVTGEGPV 90
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 54 LPGLASPTYLNGSLPGDN--------GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
L GLA +NG G++ FDPLGLA+DPE EL N R AM + G
Sbjct: 258 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 317
Query: 106 MLLPEVFTKIGII 118
+ + T G +
Sbjct: 318 FYVQALVTGEGPV 330
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 54 LPGLASPTYLNGSLPGDN--------GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
L GLA +NG G++ FDPLGLA+DPE EL N R AM + G
Sbjct: 498 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 557
Query: 106 MLLPEVFTKIGII 118
+ + T G +
Sbjct: 558 FYVQALVTGEGPV 570
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 87/181 (48%), Gaps = 23/181 (12%)
Query: 31 NREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQ 90
R VA S + K G WLPG +P +L LPG+ GFDPL L ++P +LK + +
Sbjct: 20 GRRVAAVSNGSRVTMKA---GNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTE 76
Query: 91 AELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW-YDAGKAEYFASSSTLFVIEFILFHYV 149
+E+++ RWAMLGV G L E+ +AP W + GKA +F + + F +V
Sbjct: 77 SEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFV 136
Query: 150 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA----PTDEAKEKELANG 205
+ + Q ++ L PGG F+PL FA + E K KE+ NG
Sbjct: 137 AMA--------AAEGQRRRCRRRRL-------PGGAFDPLGFAKDSSKSGELKLKEIKNG 181
Query: 206 N 206
Sbjct: 182 R 182
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 30/169 (17%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PEN Y EL+++RWAMLG G ++PE F K G
Sbjct: 105 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 164
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN-QDPIF 169
P+ W+ D G YF +S + +I ++ + + + + ++ +D +
Sbjct: 165 GPEAVWFKTGALLLDGGTLSYFGASIHINLIAAVVAEVILVGGAEYYRATNGLDFEDKL- 223
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+PGG F+PL A + K KE+ NG +LA F
Sbjct: 224 -----------HPGGPFDPLGLAKDPDQFALLKVKEIKNG----RLAMF 257
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 30/173 (17%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
++P+YL G PGD G+D GLA DP Y +AEL+++RWAMLG +G++ PE K G+
Sbjct: 138 STPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGV 197
Query: 118 -INAPQWYDAGKA-------EYFASSSTLF---VIEFILFHYVEIRRWQDIK-NPGSVNQ 165
+ P W+ AG +Y +S+ + ++ + F V + + + N G + +
Sbjct: 198 PLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGE 257
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
D ++ YPGG F+PL A E K KEL NG +LA F
Sbjct: 258 D----------SDALYPGGAFDPLGLADDPETFAELKVKELKNG----RLAMF 296
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 30/173 (17%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
++P+YL G PGD G+D GLA DP Y +AEL+++RWAMLG +G++ PE K G+
Sbjct: 378 STPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGV 437
Query: 118 -INAPQWYDAGKA-------EYFASSSTLF---VIEFILFHYVEIRRWQDIK-NPGSVNQ 165
+ P W+ AG +Y +S+ + ++ + F V + + + N G + +
Sbjct: 438 PLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGE 497
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
D ++ YPGG F+PL A E K KEL NG +LA F
Sbjct: 498 D----------SDALYPGGAFDPLGLADDPETFAELKVKELKNG----RLAMF 536
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 30/173 (17%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
++P+YL G PGD G+D GLA DP Y +AEL+++RWAMLG +G++ PE K G+
Sbjct: 618 STPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGV 677
Query: 118 -INAPQWYDAGKA-------EYFASSSTLF---VIEFILFHYVEIRRWQDIK-NPGSVNQ 165
+ P W+ AG +Y +S+ + ++ + F V + + + N G + +
Sbjct: 678 PLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGE 737
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
D ++ YPGG F+PL A E K KEL NG +LA F
Sbjct: 738 D----------SDALYPGGAFDPLGLADDPETFAELKVKELKNG----RLAMF 776
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 54 LPGLASPTYLNGSLPGDN--------GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
L GLA +NG G++ FDPLGLA+DPE EL N R AM + G
Sbjct: 1 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 60
Query: 106 MLLPEVFTKIGII 118
+ + T G +
Sbjct: 61 FYVQALVTGEGPV 73
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 54 LPGLASPTYLNGSLPGDN--------GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
L GLA +NG G++ FDPLGLA+DPE EL N R AM + G
Sbjct: 241 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 300
Query: 106 MLLPEVFTKIGII 118
+ + T G +
Sbjct: 301 FYVQALVTGEGPV 313
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 54 LPGLASPTYLNGSLPGDN--------GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
L GLA +NG G++ FDPLGLA+DPE EL N R AM + G
Sbjct: 481 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 540
Query: 106 MLLPEVFTKIGII 118
+ + T G +
Sbjct: 541 FYVQALVTGEGPV 553
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 54 LPGLASPTYLNGSLPGDN--------GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
L GLA +NG G++ FDPLGLA+DPE EL N R AM + G
Sbjct: 721 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 780
Query: 106 MLLPEVFTKIGII 118
+ + T G +
Sbjct: 781 FYVQALVTGEGPV 793
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 30/169 (17%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PEN Y EL+++RWAMLG G ++PE F K G
Sbjct: 105 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIMPEAFNKFGAYC 164
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN-QDPIF 169
P+ W+ D G YF +S + +I ++ + + + + ++ +D +
Sbjct: 165 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFEDKL- 223
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+PGG F+PL A + K KE+ NG +LA F
Sbjct: 224 -----------HPGGPFDPLGLAKDPDQFALLKVKEIKNG----RLAMF 257
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 83/173 (47%), Gaps = 35/173 (20%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL++ PE+ Y EL+++RWAMLG G +LPE F K G +
Sbjct: 26 PEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLGAAGFVLPEAFNKFGAVC 85
Query: 120 APQ--WYDAG-------KAEYFASSSTL-----FVIEFILFHYVEIRRWQDIKNPGSVNQ 165
P+ W+ G +YF ++ L + E IL E R S N+
Sbjct: 86 GPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVIAEVILVGGAEYYR--------STNK 137
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P+ + +PGG F+PL A + K KE+ NG +LA F
Sbjct: 138 SPLGSDL-----DRLHPGGAFDPLGLAKDPDQFALLKVKEIKNG----RLAMF 181
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 30/169 (17%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PEN Y EL+++RWAMLG G ++PE F K G
Sbjct: 105 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 164
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN-QDPIF 169
P+ W+ D G YF +S + +I ++ + + + + ++ +D +
Sbjct: 165 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFEDKL- 223
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+PGG F+PL A + K KE+ NG +LA F
Sbjct: 224 -----------HPGGPFDPLGLAKDPDQFALLKVKEIKNG----RLAMF 257
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 30/169 (17%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PEN Y EL+++RWAMLG G ++PE F K G
Sbjct: 80 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 139
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN-QDPIF 169
P+ W+ D G YF +S + +I ++ + + + + ++ +D +
Sbjct: 140 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFEDKL- 198
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+PGG F+PL A + K KE+ NG +LA F
Sbjct: 199 -----------HPGGPFDPLGLAKDPDQFALLKVKEIKNG----RLAMF 232
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 92/185 (49%), Gaps = 34/185 (18%)
Query: 48 EAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
E + WL ++ PTYL+G LPGD GFD GLAEDP + Y E++++RWAML +G
Sbjct: 119 EERPRWLGPISYQYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARWAMLAALG 178
Query: 106 MLLPEVFTKIGIIN--APQWYDAGKAE--------------YFASSSTLFVIEF---ILF 146
L+PEV G + P W+ G ++ +FA + VI F IL
Sbjct: 179 ALIPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIAFCQAILM 238
Query: 147 HYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPT----DEAKEKE 201
E R+ I+ ++ I+ P ++ YPGGI F+PLN + +E K KE
Sbjct: 239 VGPEYARYCGIE---ALEPLGIYL-----PGDINYPGGILFDPLNLSKDPVSFEELKVKE 290
Query: 202 LANGN 206
+ NG
Sbjct: 291 IKNGR 295
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 90/214 (42%), Gaps = 41/214 (19%)
Query: 24 TGSSGKLNREVALKPVSSSASFKVEAKGEWLPGL---ASPTYLNGSLPGDNGFDPLGLAE 80
TG G P SS F + +WL A+P YL G PGD G+D GL+
Sbjct: 19 TGKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSA 78
Query: 81 DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYF 132
DPE K Y + EL+++RWAMLG +G + PE+ K G W+ AG +Y
Sbjct: 79 DPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYL 138
Query: 133 ASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG 184
+ S + ++ IL VE R P DP+ YPG
Sbjct: 139 GNPSLVHAQNIVATLAVQVILMGLVEGYRVNG--GPAGEGLDPL------------YPGE 184
Query: 185 IFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
F+PL A E K KE+ NG +LA F
Sbjct: 185 SFDPLGLADDPDTFAELKVKEIKNG----RLAMF 214
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 182 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQ 232
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 30/169 (17%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL + PEN Y EL+++RWAMLG G ++PE F K G
Sbjct: 105 PEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 164
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN-QDPIF 169
P+ W+ D G YF +S + +I ++ + + + + ++ +D +
Sbjct: 165 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFEDKL- 223
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+PGG F+PL A + K KE+ NG +LA F
Sbjct: 224 -----------HPGGPFDPLGLAKDPDQFALLKVKEIKNG----RLAMF 257
>gi|406362893|gb|AFS34654.1| chloroplast chlorophyll a-b binding protein, partial [Leymus
secalinus]
Length = 189
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 86 KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYDAGKA------EYFASSS 136
+W E+ N R AM+GVVGM+ PE K+G++ A W+ AG +Y+A
Sbjct: 9 RWLAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPY 68
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAP 193
TLFV E L + E RR QD NPGS+ + ++Y + YPGG IFNPL F
Sbjct: 69 TLFVFEMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGT 128
Query: 194 TDEAKEKEL 202
E + KEL
Sbjct: 129 KSEKEMKEL 137
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 96/198 (48%), Gaps = 18/198 (9%)
Query: 26 SSGKLNREVALKPVSSSASFKVEAKGEWL-PGLASPTYLNGSLPGDNGFDPLGLAEDPEN 84
++GK NR+V ++ F + +L P +P+YLNG PGD G+D GL+ DPE
Sbjct: 21 TAGKGNRQV----TRAAIEFYGPDRATFLGPFTDTPSYLNGEFPGDYGWDTAGLSADPET 76
Query: 85 LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEF 143
Y + E++++RWAMLG +G + PE+ K G+ W+ AG A+ F S ++
Sbjct: 77 FARYREIEVIHARWAMLGALGCVTPELLAKNGVSFGEAVWFKAG-AQIFGSDGLNYLGNS 135
Query: 144 ILFH---YVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DE 196
L H + Q I G+ + L + YPGG F+PL A E
Sbjct: 136 SLVHAQSIIATLACQVILMGGAEAYRAAGEGPGLEGLDSLYPGGPFDPLGLADDPDTFSE 195
Query: 197 AKEKELANGNNSAKLAYF 214
K KE+ NG +LA F
Sbjct: 196 LKVKEIKNG----RLAMF 209
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 181 FDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 226
>gi|365268963|gb|AEW70714.1| light harvesting chlorophyll a-b binding protein 6 [Phyllostachys
edulis]
Length = 250
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 85/159 (53%), Gaps = 22/159 (13%)
Query: 50 KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K W+P + S P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 46 KKSWVPAVKSDAEFINPPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAV 105
Query: 104 VGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + + ++ + W++AG A S TL + +L +VE +RW D +P
Sbjct: 106 LGIFVGQAWSGV------PWFEAGAQPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFSP 159
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFA 192
S + + ++ E GYPGG F+PL
Sbjct: 160 DSQSVEWATPWSRTADNFANATGEQGYPGGKFFDPLGLG 198
>gi|149392115|gb|ABR25924.1| chloroplast chlorophyll a-b binding protein 8 [Oryza sativa Indica
Group]
Length = 191
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 86 KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSS 136
+W E+ N R AM+GVVGM+ PE+ K+G++ A W+ AG Y+A
Sbjct: 11 RWLAYGEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAGTYTYWADPY 70
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAP 193
TLFV E L + E RR+QD PGS+ + ++Y E YPGG +FNPL F
Sbjct: 71 TLFVFELALVGFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGT 130
Query: 194 TDEAKEKEL 202
EA+ KEL
Sbjct: 131 KSEAEMKEL 139
>gi|168067076|ref|XP_001785452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168067086|ref|XP_001785457.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662935|gb|EDQ49732.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662940|gb|EDQ49737.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 296
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 83/203 (40%), Gaps = 79/203 (38%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPE----------------------------- 83
W PG +P +L+GSLPGD GFDPL L + PE
Sbjct: 64 WFPGARAPEWLDGSLPGDYGFDPLSLGKSPEYLQIELDSLNQNLAKNEAGDVIGTRISKK 123
Query: 84 ---------------NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGK 128
L+ + + EL++ RWAML ++G L E FT + W DAGK
Sbjct: 124 EEIAPTPFQPYSEVFGLQRFRECELIHGRWAMLAILGALSVEAFTGV------TWQDAGK 177
Query: 129 AE------YFA-----SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
E YF S ++L IE L ++E +R L P
Sbjct: 178 VELVDGASYFGLPLPFSITSLVYIEAFLVGFIEFQR-----------------NAELDPE 220
Query: 178 EVGYPGG-IFNPLNFAPTDEAKE 199
+ YPGG F+PLNFA T+E KE
Sbjct: 221 KRLYPGGKFFDPLNFADTEEKKE 243
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 89/214 (41%), Gaps = 41/214 (19%)
Query: 24 TGSSGKLNREVALKPVSSSASFKVEAKGEWLPGL---ASPTYLNGSLPGDNGFDPLGLAE 80
TG G P SS F + +WL A+P YL G PGD G+D GL+
Sbjct: 19 TGKKGTGKTAAKSAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSA 78
Query: 81 DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYF 132
DPE K Y + EL+++RWAMLG +G L PE+ K G W+ AG +Y
Sbjct: 79 DPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTQFGEAVWFKAGAQIFSEGGLDYL 138
Query: 133 ASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG 184
+ S + + IL VE R P DP+ YPG
Sbjct: 139 GNPSLVHAQNIVATLACQVILMGLVEGYRVNG--GPAGEGLDPL------------YPGE 184
Query: 185 IFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
F+PL A E K KE+ NG +LA F
Sbjct: 185 SFDPLGLADDPDTFAELKVKEIKNG----RLAMF 214
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G +
Sbjct: 182 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQ 232
>gi|167966192|gb|ACA13177.1| chloroplast a/b binding protein cab-PhE11 [Phyllostachys edulis]
Length = 252
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 84/159 (52%), Gaps = 22/159 (13%)
Query: 50 KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K W+P + S P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 48 KKSWVPAVKSDAEFINPPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAV 107
Query: 104 VGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + ++ + W++AG A S TL + +L +VE +RW D +P
Sbjct: 108 LGIFVGRAWSGV------PWFEAGAQPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFSP 161
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFA 192
S + + ++ E GYPGG F+PL
Sbjct: 162 DSQSVEWATPWSRTADNFANATGEQGYPGGKFFDPLGLG 200
>gi|307106431|gb|EFN54677.1| hypothetical protein CHLNCDRAFT_24450 [Chlorella variabilis]
Length = 189
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 6/89 (6%)
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGL D + LKWY +AE N RWAM V G+L +V K P+W++AG EY+
Sbjct: 28 DPLGLGVDSDRLKWYTEAEKTNGRWAMAAVAGILFTDVLGK------PKWFEAGAQEYWM 81
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
++ L IEF++ ++E++R+Q K G+
Sbjct: 82 DNNALLAIEFLVLGFLELKRFQGWKETGT 110
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 84/174 (48%), Gaps = 39/174 (22%)
Query: 47 VEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGM 106
V G WLPG +P YL +LP GFDPLGLA++ +L+ + ++E+++ RWAMLG G+
Sbjct: 25 VMKAGNWLPGSDTPAYLE-NLPASYGFDPLGLAKEAPSLQRFKESEVIHGRWAMLGAAGV 83
Query: 107 LLPEVFTKIGIINAPQWYDA-------GKAEYFASS-----STLFVIEFILFHYVEIRRW 154
L EV +G N WYDA G A YF +S TL IEF E
Sbjct: 84 LGVEV---LGYGN---WYDAPLPLVQGGSATYFGASIPFDLGTLAAIEFAAMAGAE---- 133
Query: 155 QDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP--TDEAKEKELANGN 206
F+ + P V YPGG F+P + DE + KE+ NG
Sbjct: 134 -------------SFRGAAEPEKRV-YPGGPFDPAGMSKGNQDELRTKEIKNGR 173
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 96/217 (44%), Gaps = 40/217 (18%)
Query: 14 RPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDN 71
R A+K+ T S + R A K V S F + +L GL+ P YLNG PGD
Sbjct: 10 RAVAAKAGRKTTVSVQARRTQAKKAVPES-PFYGPNRPLFLGGLSGEPPAYLNGEFPGDY 68
Query: 72 GFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQ--WYDAGKA 129
G+D GL+ DPE K Y Q EL+++RWA+LG +G ++PE+ + G+ W+ G A
Sbjct: 69 GWDTAGLSADPETFKRYRQLELIHARWALLGALGCVVPELLARNGVAMPADGVWFKVG-A 127
Query: 130 EYF----------------ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYS 173
E F S +++ +L + E R P DP+
Sbjct: 128 EIFKEGGLNYLGNENLVHAQSIVATLLVQLVLMGWAEGYRING--GPLGEGLDPL----- 180
Query: 174 LPPNEVGYPGGIFNPLNFA----PTDEAKEKELANGN 206
YPGG F+PL A E K KEL NG
Sbjct: 181 -------YPGGAFDPLGLADDPDTLAELKVKELKNGR 210
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DP+ L EL N R AM + G L+ + T+ G
Sbjct: 186 FDPLGLADDPDTLAELKVKELKNGRMAMAAMFGFLVQAIVTQKG 229
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 80/168 (47%), Gaps = 28/168 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL PEN Y EL+++RWAMLG G ++PE F K G
Sbjct: 104 PEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 163
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D G YF +S + +I ++ V + + + +N D
Sbjct: 164 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGLNFDDKL- 222
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+PGG F+PL A + K KE+ NG +LA F
Sbjct: 223 ----------HPGGPFDPLGLAKDPDQFALLKVKEIKNG----RLAMF 256
>gi|384248209|gb|EIE21694.1| hypothetical protein COCSUDRAFT_67011 [Coccomyxa subellipsoidea
C-169]
Length = 316
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 82/203 (40%), Gaps = 62/203 (30%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPE----------------------------- 83
WLP P +L+GSLPGD GFDPLGL+ +
Sbjct: 81 WLPNTERPAWLDGSLPGDRGFDPLGLSSPQDYLQVGIDQLDQNKAVNKAGAIVGKFAAPK 140
Query: 84 ---------------NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGK 128
L+ + + EL++ RWAMLG +G+L+ E T + W DAGK
Sbjct: 141 TKISDTALQPYDEVFGLQRFRETELIHGRWAMLGALGVLVAEASTGV------SWVDAGK 194
Query: 129 AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNP 188
E + F + F + V W + G I++ L P YPGG F+P
Sbjct: 195 VELDGAQYLGFSLPFSISQLV----WIEAILVGGAE---IYRNRELEPQARIYPGGYFDP 247
Query: 189 LNFAPTDEA-----KEKELANGN 206
L A D+A KE EL +G
Sbjct: 248 LGLATGDDARAFKLKEAELKHGR 270
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 85/166 (51%), Gaps = 15/166 (9%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A+P+YLNG PGD G+D GL+ DPE Y + E++++RWAMLG +G L PE+ ++ G
Sbjct: 10 ATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLSQNGF 69
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
P W+ AG A+ +S ++ + L H I ++ + ++ P
Sbjct: 70 TFQEPVWWKAG-AQILSSEGLDYLGKPNLVHAQSIVATLAVQVI-LMGSAEAYRAAGSAP 127
Query: 177 NEVG----YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
G YPGG F+PL FA E K KE+ NG +LA F
Sbjct: 128 GVDGLDKLYPGGPFDPLEFASDPDTLAELKVKEIKNG----RLAMF 169
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 29/178 (16%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
+ A+ W PG +P +L G LP D GFDPL L E P+NL Y +AEL+++RWAM+GV G
Sbjct: 27 RASARPMWFPGAEAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMHARWAMMGVAG 86
Query: 106 MLLPEVFTKIGIINA-PQWYDAGKAEYFA--SSSTLFV---IEFILFHYVEIRRWQDIKN 159
+ E+ + +A P +DA A+Y + + LF + +L + E +R Q
Sbjct: 87 AVGVEIAGQGDWASAQPTTWDA-TAKYLGNETHAPLFAVIGVNGVLVAFAESQR-QAATG 144
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDE---AKEKELANGNNSAKLAYF 214
+ YPGG F+P + + K KELANG A +A+F
Sbjct: 145 EARL-----------------YPGGSFDPAGLSKGKDFETLKRKELANG-RVAMMAFF 184
>gi|168040609|ref|XP_001772786.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168040679|ref|XP_001772821.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675863|gb|EDQ62353.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675898|gb|EDQ62388.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 296
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 87/216 (40%), Gaps = 79/216 (36%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPE----------------------------- 83
W PG +P +L+GSLPGD GFDPL L + PE
Sbjct: 64 WFPGAQAPEWLDGSLPGDYGFDPLSLGKSPEYLQIELDSLNQNLAKNEAGDVIGTRISKK 123
Query: 84 ---------------NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGK 128
L+ + + EL++ RWAML ++G L E FT + W DAGK
Sbjct: 124 EEIAPTPFQPYSEVFGLQRFRECELIHGRWAMLAILGALSVEAFTGV------TWQDAGK 177
Query: 129 AE------YFA-----SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
E YF S ++L IE L ++E +R L P
Sbjct: 178 VELVDGASYFGLPLPFSITSLVYIEAFLVGFIEFQR-----------------NAELDPE 220
Query: 178 EVGYPGG-IFNPLNFAPTDEAKEKELANGNNSAKLA 212
+ YPGG F+PLNFA T++ KE A+LA
Sbjct: 221 KRLYPGGKFFDPLNFADTEDKKETLKLAEIKHARLA 256
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 112/232 (48%), Gaps = 29/232 (12%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSS------GKLNREVALKPVSSSASFKVEAKGEWL 54
MA T S+ F A K+ L+ SS G+++ KPVSS + + + ++L
Sbjct: 1 MAAATMALSSPAF---AGKAVKLSPSSPELMGNGRVSMRKTTKPVSSGSPWYGPDRVKYL 57
Query: 55 PGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+
Sbjct: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 117
Query: 113 TKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIF 169
++ G+ W+ AG A+ F+ ++ L H I W + G+V +
Sbjct: 118 SRNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEG---Y 173
Query: 170 KQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ P E+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 174 RIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 221
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 183 ITDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 102/238 (42%), Gaps = 57/238 (23%)
Query: 2 ATVTTQASAAVFRPCASKSRFLTGSSGKL---NREVALKPVSSSASFKVEAKGEWLPGLA 58
AT T+A+ + RP SR +T +S + +R L P S A
Sbjct: 3 ATAATRATFGLSRPAVRGSRQVTRASVEFYGPDRAKWLGPFSDGAV-------------- 48
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
P+YL G PGD G+D GL+ DPE Y + E++++RWAMLG +G L PE+ G
Sbjct: 49 -PSYLKGEFPGDYGWDSAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLQNNGAA 107
Query: 119 N---APQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNP 160
+ A W+ AG + Y + S + + + ++ E R+ + P
Sbjct: 108 DFGEAAVWFKAGASIFSDDGLNYLGNPSLIHAQSIVAVLLTQLVIMGAAEAYRYAG-EGP 166
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ D + YPGG F+PL A E K KEL NG +LA F
Sbjct: 167 VETSGDSL------------YPGGAFDPLGLADDPDTLAELKVKELKNG----RLAMF 208
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
FDPLGLA+DP+ L EL N R AM + G + + T
Sbjct: 180 FDPLGLADDPDTLAELKVKELKNGRLAMFSMFGFFVQALIT 220
>gi|145078792|tpg|DAA05884.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Euglena gracilis]
Length = 295
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 77/172 (44%), Gaps = 31/172 (18%)
Query: 37 KPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
+ S+ S VE + W P + P YL G PGD GFDP GL+ DPE AE+++
Sbjct: 72 RSASTRGSASVEERLLWFPNVTPPAYLTGEFPGDRGFDPAGLSADPETFDRMRIAEIIHG 131
Query: 97 RWAMLGVVGMLLPEVFTKIGIINAP--QWYDAGKAEYFASSSTLFVIEFILFHYVEIRRW 154
R AML VVG L+P+ K AP D G + F++ + +F + R
Sbjct: 132 RVAMLAVVGALVPDFLGKGNWFEAPAIAGIDIGDVQQ-------FILGYGVFEFG--RGL 182
Query: 155 QDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
NP ++ YPG F+PLN +D KE E+ NG
Sbjct: 183 NKSSNPAAI-----------------YPG--FDPLNLT-SDYTKEAEIKNGR 214
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 39/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
P+YL G PGD G+D GL+ DPE + Y + EL+++RWAMLG +G + PE+ K G +
Sbjct: 53 CPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILAKYGGV 112
Query: 119 NAPQ--WYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPG 161
+ + W+ AG +Y +SS + + +L +E R
Sbjct: 113 SFGESVWFKAGSQIFQEGGLDYLGNSSLVHAQYILAILGCQVLLMGAIEAYR-------- 164
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
VN P+ + L P YPGG F+PL A E K KE+ NG +LA F
Sbjct: 165 -VNGGPLGE--GLDPL---YPGGQFDPLGLADDPDTFAELKVKEIKNG----RLAMF 211
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 103/231 (44%), Gaps = 27/231 (11%)
Query: 1 MATVTTQASA----AVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLP- 55
MAT T Q SA + +P R G+ G+ + +K S + + P
Sbjct: 1 MATSTIQQSAFAGQTILKPQNELVRKFGGNGGRASMRRTVKSAPQSIWYGPDRPKYLGPF 60
Query: 56 GLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K
Sbjct: 61 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 120
Query: 116 GI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYS 173
G+ W+ AG ++ F ++ L H I W V + + Y
Sbjct: 121 GVKFGEAVWFKAG-SQIFQEGGLDYLGNPNLIHAQSILAIWAS-----QVVLMGLIEGYR 174
Query: 174 LPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ +G YPGG F+PL A EA K KEL NG +LA F
Sbjct: 175 VGGGPLGEGLDKLYPGGAFDPLGLADDPEAFAELKVKELKNG----RLAMF 221
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE EL N R AM + G + + T G I
Sbjct: 193 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 27/170 (15%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD GFDP GL++ P + Y EL+++RWAMLG G ++PE F K G
Sbjct: 78 PEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWAMLGAAGFVIPEAFNKFGAQC 137
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D G YF ++ + ++ +L + + + ++ ++ D +
Sbjct: 138 GPEAVWFKTGALLLDGGTLNYFGANIPINLVLAVLAEVILVGGAEYYRSINNLGLDRL-- 195
Query: 171 QYSLPPNEVGYPGGIFNPLNFA--PTDEA--KEKELANGNNS--AKLAYF 214
+PGG F+PL A P + A K KE+ NG + A L +F
Sbjct: 196 ----------HPGGPFDPLGLAKDPDNFALLKVKEIKNGRLAMFAMLGFF 235
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
FDPLGLA+DP+N E+ N R AM ++G +
Sbjct: 201 FDPLGLAKDPDNFALLKVKEIKNGRLAMFAMLGFFI 236
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 25/231 (10%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLP 55
MA T S++ F A K S L G + R+ A K PVSS + + + +L
Sbjct: 1 MAATTMSLSSSAFAGKAVKNLPSSALFGEARVTMRKTAAKAKPVSSGSPWYGSDRVLYLG 60
Query: 56 GLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L+ P+YL G PGD G+D GL+ DPE + EL++SRWAMLG +G + PE+
Sbjct: 61 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLA 120
Query: 114 KIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFK 170
+ G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 RNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YR 176
Query: 171 QYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P E+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 177 VAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 223
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 185 IVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 82/168 (48%), Gaps = 28/168 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 94 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIVPEAFNKFGANC 153
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D G YF +S + ++ ++ V + G I
Sbjct: 154 GPEAVWFKTGALLLDGGTLNYFGNSIPINLVVAVIAEVVLL---------GGAEYYRIIN 204
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
L + +PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 205 GLDL--EDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNG----RLAMF 246
>gi|296081542|emb|CBI20065.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 49/72 (68%), Gaps = 6/72 (8%)
Query: 50 KGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K WLPG L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 53 KKSWLPGVKAGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 112
Query: 104 VGMLLPEVFTKI 115
VG+ + + ++ I
Sbjct: 113 VGIFVGQAWSGI 124
>gi|255070403|ref|XP_002507283.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522558|gb|ACO68541.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 247
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 24/177 (13%)
Query: 32 REVALKPVSS-SASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQ 90
R A K ++ F V A WLPG P YL+G++ GD GFDPL L +P+ L + +
Sbjct: 16 RSSATKKIARRHHGFAVRAGTHWLPGTQPPPYLDGTMAGDYGFDPLRLGANPDTLPYLQE 75
Query: 91 AELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA-SSSTLFVIEFILFHYV 149
AEL+N RWAM G+L + + P+W++AG+A + TL + ++ ++
Sbjct: 76 AELMNGRWAMHATAGILFTDA------VGLPKWWEAGEAALGDWNLQTLVAFQVVIMAFL 129
Query: 150 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
E R I+ + Q + + P P E + KE+ NG
Sbjct: 130 EAAR---IRGFMTTGQSGVIGNFPFDPTGQDSP-------------EMRVKEVKNGR 170
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 36/167 (21%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A+P+YL G PGD G+D GL+ DP+ Y + E++++RWAMLG +G ++PE+
Sbjct: 54 ATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAMLGALGCVVPELLDG--- 110
Query: 118 INAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
N W++AG +Y S +++ IL YVE R P
Sbjct: 111 TNHIAWFNAGATIFSDDGLQYLGIPGLINAKSIVATLIVQVILMSYVEGYRVN--GGPAG 168
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANG 205
D + YPGG F+PL A E K KE+ NG
Sbjct: 169 TGLDAV------------YPGGSFDPLGLADDPDTFSELKVKEIKNG 203
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
T L+ PG + FDPLGLA+DP+ E+ N R AML + G + + T G I
Sbjct: 169 TGLDAVYPGGS-FDPLGLADDPDTFSELKVKEIKNGRLAMLSMFGFFIQAIVTGEGPI 225
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 80/177 (45%), Gaps = 38/177 (21%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G L PE+ +K G+
Sbjct: 53 ATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGV 112
Query: 118 -INAPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPG 161
W+ AG +Y + S + + IL VE R P
Sbjct: 113 QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNG--GPA 170
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPG F+PL A E K KE+ NG +LA F
Sbjct: 171 GEGLDPL------------YPGESFDPLGLADDPDTFAELKVKEIKNG----RLAMF 211
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 179 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 228
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 80/177 (45%), Gaps = 38/177 (21%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G L PE+ +K G+
Sbjct: 53 ATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGV 112
Query: 118 -INAPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPG 161
W+ AG +Y + S + + IL VE R P
Sbjct: 113 QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNG--GPA 170
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPG F+PL A E K KE+ NG +LA F
Sbjct: 171 GEGLDPL------------YPGESFDPLGLADDPDTFAELKVKEIKNG----RLAMF 211
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 179 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 228
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 32/171 (18%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P+YL G LPGD GFD GL +DP L+ Y E++++RWAML VG L+PE+ +G +
Sbjct: 122 PSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARWAMLASVGALIPEILDLLGAFH 181
Query: 120 --APQWYDAGKAE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 160
P W+ G ++ +FA S + VI + +L E R+ I+
Sbjct: 182 FVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGIE-- 239
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEA----KEKELANGN 206
++ I+ P ++ YPGG +F+PLN + EA K KE+ NG
Sbjct: 240 -ALEPLGIYL-----PGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGR 284
>gi|302839735|ref|XP_002951424.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
gi|300263399|gb|EFJ47600.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
Length = 317
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 82/213 (38%), Gaps = 59/213 (27%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPE---------------------- 83
K + WLP P +L+GSLPGD GFDPLGLA+ E
Sbjct: 83 KYQGDALWLPNTVRPEWLDGSLPGDRGFDPLGLAKPSEFVVIGVDENDQNAAKNNKGSVE 142
Query: 84 -----------------------NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
L + + EL++ RWAML +G L+ E T +
Sbjct: 143 AVVTATPDEVSAENRLAPYSEVFGLARFRECELIHGRWAMLACLGCLVAEATTGV----- 197
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
W DAGK E +S + F + + W ++ G I++ P +
Sbjct: 198 -SWVDAGKVELDGASYAGLSLPFSITQLI----WIEVILVGGAE---IYRNTETNPEKRC 249
Query: 181 YPGGIFNPLNFAPTDEAKEKELANGN-NSAKLA 212
YPGG F+PL A DE + L A+LA
Sbjct: 250 YPGGFFDPLKLASEDEERAFRLKTAEIKHARLA 282
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 80/177 (45%), Gaps = 38/177 (21%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G L PE+ +K G+
Sbjct: 53 ATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGV 112
Query: 118 -INAPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPG 161
W+ AG +Y + S + + IL VE R P
Sbjct: 113 QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNG--GPA 170
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPG F+PL A E K KE+ NG +LA F
Sbjct: 171 GEGLDPL------------YPGESFDPLGLADDPDTFAELKVKEIKNG----RLAMF 211
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 179 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 228
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 24/230 (10%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG 56
MA T S+ F A K + +TG+ R+ KPV+SS+ + + ++L
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP 60
Query: 57 LA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
+ SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 115 IGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQ 171
G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 NGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRV 176
Query: 172 YSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 AGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 222
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 86/198 (43%), Gaps = 41/198 (20%)
Query: 40 SSSASFKVEAKGEWLPGL---ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
SS F + +WL A+P YL G PGD G+D GL+ DPE K Y + EL+++
Sbjct: 31 SSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 90
Query: 97 RWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSSTL--------FV 140
RWAMLG +G L PE+ K G W+ AG +Y + S +
Sbjct: 91 RWAMLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLA 150
Query: 141 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DE 196
++ IL +E R P DP+ YPG F+PL A E
Sbjct: 151 VQVILMGLIEGYRVNG--GPAGEGLDPL------------YPGESFDPLGLADDPDTFAE 196
Query: 197 AKEKELANGNNSAKLAYF 214
K KE+ NG +LA F
Sbjct: 197 LKVKEIKNG----RLAMF 210
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G +
Sbjct: 178 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQ 228
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 80/168 (47%), Gaps = 28/168 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 89 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 148
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D G YF I FIL EI + +N
Sbjct: 149 GPEAVWFKTGALLLDGGTLNYFGKP---IPINFILAVVAEIVLVGGAEYYRIIN------ 199
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
L + +PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 200 --GLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNG----RLAMF 241
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG 56
MA T S+ F A K + +TG+ R+ A KPVSSS+ + + ++L
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEITGNGRVSMRKTAAKPVSSSSPWYGPDRVKYLGP 60
Query: 57 LA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
+ SP+YL PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +
Sbjct: 61 FSGESPSYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 115 IGI-INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIK 158
G+ W+ AG +Y + S ++ + IL VE R
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG-- 178
Query: 159 NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P DP+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 GPLGEVVDPL------------YPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 222
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ +K G+
Sbjct: 66 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 125
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y S + ++ + +L ++E R P
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGSPNLIHAQSILAIWACQVVLMGFIEGYRIGG--GPLG 183
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PLN A EA K KEL NG +LA F
Sbjct: 184 EGLDPL------------YPGGAFDPLNLAEDPEAFSELKVKELKNG----RLAMF 223
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPL LAEDPE EL N R AM + G + + T G I
Sbjct: 195 FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 95/214 (44%), Gaps = 43/214 (20%)
Query: 24 TGSSGKLNREVALKPVSSSASFKVEAKGEWLPGL---ASPTYLNGSLPGDNGFDPLGLAE 80
TG G ++ VA KP S + + +WL A+P YL G PGD G+D GL+
Sbjct: 19 TGKKGT-SKTVA-KPAPSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSA 76
Query: 81 DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYF 132
DPE K Y + EL+++RWAMLG +G + PE+ +K G+ W+ AG +Y
Sbjct: 77 DPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYL 136
Query: 133 ASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG 184
+ S + + IL VE R P DP+ YPG
Sbjct: 137 GNPSLVHAQNIVATLACQVILMGLVEGYRVNG--GPAGEGLDPL------------YPGE 182
Query: 185 IFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
F+PL A E K KE+ NG +LA F
Sbjct: 183 SFDPLGLADDPDTFAELKVKEIKNG----RLAMF 212
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 180 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 229
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 30/169 (17%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 90 PEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 149
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN-QDPIF 169
P+ W+ D YF ++ + +I ++ V + + + +N +D +
Sbjct: 150 GPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKL- 208
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
+PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 209 -----------HPGGPFDPLGLADDPDQAAILKVKEIKNG----RLAMF 242
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 81/174 (46%), Gaps = 29/174 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P +L+G+L GD GFDPL LA E+L+ Y + EL++ RWAMLGVVG +PE + G+ N
Sbjct: 48 PAHLDGTLCGDVGFDPLNLAAKSEDLERYRELELLHGRWAMLGVVGAAVPETLDRFGVAN 107
Query: 120 --APQWYDAGKAE---------------YFASSSTLFVI---EFILFHYVEIRRWQDIKN 159
P W+ G A+ + A S + VI + +L E R+ I +
Sbjct: 108 LGEPVWWKVGAAKMNSDIALDYLGFSGFHIAGGSGIAVIAACQLVLMGGPEYARYVGINS 167
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEAKEKELANGNNSAKLA 212
V P + YPGG F+P F+ E EK+ +LA
Sbjct: 168 LEPVG--------VYLPGDKDYPGGAPFDPFKFSDDAEEFEKQKVMEIKHCRLA 213
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ +K G+
Sbjct: 65 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 124
Query: 118 INAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y S ++ ++ +L ++E R P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PLN A EA K KEL NG +LA F
Sbjct: 183 EGLDPL------------YPGGAFDPLNLAEDPEAFSELKVKELKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPL LAEDPE EL N R AM + G + + T G I
Sbjct: 194 FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ +K G+
Sbjct: 65 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 124
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + + ++ ++ +L ++E R P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PLN A EA K KEL NG +LA F
Sbjct: 183 EGLDPL------------YPGGAFDPLNLAEDPEAFSELKVKELKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPL LAEDPE EL N R AM + G + + T G I
Sbjct: 194 FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ +K G+
Sbjct: 65 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 124
Query: 118 INAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y S ++ ++ +L ++E R P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PLN A EA K KEL NG +LA F
Sbjct: 183 EGLDPL------------YPGGAFDPLNLAEDPEAFSELKVKELKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPL LAEDPE EL N R AM + G + + T G I
Sbjct: 194 FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ +K G+
Sbjct: 65 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 124
Query: 118 INAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y S ++ ++ +L ++E R P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PLN A EA K KEL NG +LA F
Sbjct: 183 EGLDPL------------YPGGAFDPLNLAEDPEAFSELKVKELKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPL LAEDPE EL N R AM + G + + T G I
Sbjct: 194 FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ +K G+
Sbjct: 65 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 124
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + + ++ ++ +L ++E R P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PLN A EA K KEL NG +LA F
Sbjct: 183 EGLDPL------------YPGGAFDPLNLAEDPEAFSELKVKELKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPL LAEDPE EL N R AM + G + + T G I
Sbjct: 194 FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|303272113|ref|XP_003055418.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226463392|gb|EEH60670.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 254
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
++ G WLPG P+YL+G++P D GFDPL L +PE L + +AEL+N RWAM G
Sbjct: 37 RIGVMGHWLPGTEPPSYLDGTMPADYGFDPLRLGANPETLPYLQEAELMNGRWAMHATAG 96
Query: 106 MLLPEVFTKIGIINAPQWYDAGKAEYFA-SSSTLFVIEFILFHYVEIRR 153
+L + + P++++AG+A TL I+ ++ ++E R
Sbjct: 97 ILFTDA------VGLPKFWEAGEAALGDWDLKTLVAIQVVVMGFLEAAR 139
>gi|224284808|gb|ACN40134.1| unknown [Picea sitchensis]
Length = 208
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PEN Y EL+++RWAMLG G ++PE F K G
Sbjct: 105 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 164
Query: 120 APQ--WY-------DAGKAEYFASS 135
P+ W+ D G YF +S
Sbjct: 165 GPEAVWFKTGALLLDGGTLSYFGAS 189
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 37/217 (17%)
Query: 10 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSL 67
+A+ P + R L + E + ++ + F + +WL + +P+YL G
Sbjct: 2 SAMIAPLVRQGRCL-----RAQGERSTSVIARAVEFYGPDRAKWLGPFSDDTPSYLTGEF 56
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAG 127
PGD G+D GL+ DPE Y + E++++RWAMLG +G + PE+ G I P W+ AG
Sbjct: 57 PGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCITPELIG--GDIAEPVWFKAG 114
Query: 128 KA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
+Y + S + ++ IL E R PG +D
Sbjct: 115 AQIFSEGGLDYLGNPSLVHAQSIIATLAVQVILMGQAEAFRAAGYVVPGGFGED------ 168
Query: 173 SLPPNEVGYPGGIFNPLNFAPTD---EAKEKELANGN 206
+ YPG F+PL + D E K KE+ NG
Sbjct: 169 ----LDNLYPGDAFDPLAWLIPDTFAELKVKEIKNGR 201
>gi|303324980|pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 78/163 (47%), Gaps = 34/163 (20%)
Query: 81 DPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYD------ 125
DPE +W E++N R+AMLG VG + PE K+G+I A W+
Sbjct: 2 DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPP 61
Query: 126 AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PPNE 178
AG Y+A + TLFV+E L + E RR+QD PGS+ KQY L
Sbjct: 62 AGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGFGGSGN 116
Query: 179 VGYPGG-IFNPLNFAPTD----EAKEKELANGNNS--AKLAYF 214
YPGG FNPL F + E K KE+ NG + A L YF
Sbjct: 117 PAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 159
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
N + PG F+PLG +D ++LK E+ N R AML ++G + + T +G
Sbjct: 116 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 168
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 101/204 (49%), Gaps = 20/204 (9%)
Query: 23 LTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAE 80
+TG+ R+ KPV+SS+ + + ++L + SP+YL G PGD G+D GL+
Sbjct: 27 ITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSA 86
Query: 81 DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLF 139
DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG ++ F+ +
Sbjct: 87 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSDGGLDY 145
Query: 140 VIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPT 194
+ L H I W + G+V ++ P EV YPGG F+PL A
Sbjct: 146 LGNPSLIHAQSILAIWACQVILMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLADD 202
Query: 195 DEA----KEKELANGNNSAKLAYF 214
EA K KE+ NG +LA F
Sbjct: 203 PEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 65 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEG---YRIAGGP 180
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 181 PGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNG----RLAMF 222
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE EL N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 117 II 118
I
Sbjct: 238 PI 239
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 88/179 (49%), Gaps = 23/179 (12%)
Query: 50 KGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
+G WL L+ +P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G +
Sbjct: 57 RGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAMLGALGCI 116
Query: 108 LPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD 166
PE+ K G I P W+ AG A+ FA ++ L H I ++ V
Sbjct: 117 TPELLAKNGTPIVEPVWFKAG-AQIFAEGGLDYLGNPGLVHAQSILATLAVQ----VILM 171
Query: 167 PIFKQYSLPPNEVG------YPGG-IFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ Y + G +PGG F+PL A +A K KE+ NG +LA F
Sbjct: 172 GAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNG----RLAMF 226
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
PG FDPLGLAEDP+ E+ N R AM + G + + T G
Sbjct: 193 PGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 241
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 36/175 (20%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ K GI
Sbjct: 49 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIP 108
Query: 118 INAPQWYDAGKAEYFASSSTLF-----------VIEFILFHYVEIRRWQDIK-NPGSVNQ 165
W+ AG A+ FA + +I + F V + + + N G + +
Sbjct: 109 FGEAVWFKAG-AQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGE 167
Query: 166 --DPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ +PGG F+PL A E K KE+ NG +LA F
Sbjct: 168 GLDPL------------HPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 206
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 178 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQ 224
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 77/178 (43%), Gaps = 35/178 (19%)
Query: 52 EWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+WL G P YL G LPGD G+D GL DP L Y A++++ RWAMLGV+G P
Sbjct: 844 KWLGGFTGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIHGRWAMLGVLGCWFP 903
Query: 110 EVFTKIGII--NAPQWYDAGKAEY--------------FASSSTL-FVIEFILFHYVEIR 152
E + G + P W+ AG + A S L F+ +L VE
Sbjct: 904 ECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHAQSVVLTFLSTLVLMGAVEAY 963
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGN 206
R + DP+ YPGG F+PL A EA K KE+ NG
Sbjct: 964 RSAGSVGDFGADLDPL------------YPGGPFDPLGLADDPEAFLELKVKEVKNGR 1009
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 78/173 (45%), Gaps = 32/173 (18%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G A P YL G GD GFD GLA DP+ + Y AEL N RWAMLGV+G L PEV +
Sbjct: 371 LSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGVLGCLAPEVLS 430
Query: 114 KIGIINAPQ--WYDAGKAEYFASSSTLFVIEFILFH--------------YVEIRRWQDI 157
+ + P+ W+ G A S ++ L H + W++
Sbjct: 431 NVFGVPYPEPVWFKTG-ATILNGGSIDYLANPKLIHASNLLLTLVLELVFFFAAETWRE- 488
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
+ P+ K + YPGG+F+PL A EAK KE+ NG
Sbjct: 489 -----AGEGPLGKA-----QDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNGR 531
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 50 KGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
+ +WL L P+YL G LPGD G+D GL DP L Y +AE++++RWAMLG +G++
Sbjct: 139 RAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVV 198
Query: 108 LPEVFTKIGII--NAPQWYDAGKAEYFASSSTLFVIEFILFHY--VEIRRWQDIKNPGSV 163
PE+ G+ WY AG A+ F++ ++ L H V + + G+V
Sbjct: 199 TPELLAGNGVPFGEGAVWYKAG-AQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAV 257
Query: 164 NQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGN 206
+Y + G YPGG F+PL A +A K KEL NG
Sbjct: 258 EA----YRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGR 306
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 50 KGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
+ +WL L P+YL G LPGD G+D GL DP L Y +AE++++RWAMLG +G++
Sbjct: 600 RAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVV 659
Query: 108 LPEVFTKIGII--NAPQWYDAGKAEYFASSSTLFVIEFILFHY--VEIRRWQDIKNPGSV 163
PE+ G+ WY AG A+ F++ ++ L H V + + G+V
Sbjct: 660 TPELLAGNGVPFGEGAVWYKAG-AQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAV 718
Query: 164 NQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGN 206
+Y + G YPGG F+PL A +A K KEL NG
Sbjct: 719 EA----YRYGGGVGDSGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGR 767
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DP+ L EL N R AM+ ++G + + TK G +
Sbjct: 282 FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 327
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DP+ L EL N R AM+ ++G + + TK G +
Sbjct: 743 FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 788
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYD 125
FDPLGLA+DPE E+ N R AM+ + G + + T G + W D
Sbjct: 985 FDPLGLADDPEAFLELKVKEVKNGRLAMVAIFGFFVQGILTGKGPVE--NWVD 1035
Score = 36.2 bits (82), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYD 125
FDPLGLA+DPE E+ N R AM+ + G + + T G + W D
Sbjct: 45 FDPLGLADDPEAFLELKVKEVKNGRLAMVAIFGFSVQGILTGKGPVE--NWVD 95
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI- 117
P+YL G LPGD G+D GL DP L+ Y +AEL++ RWAMLG VG LPE + G+
Sbjct: 2 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 61
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFH---YVEIRRWQDIKNPGSVNQDPIFKQYSL 174
P W+ AG A+ F++ + + L H + I Q + G+V ++ +
Sbjct: 62 FGEPIWFKAG-AQIFSAEGLNYFGQPALIHAKSLLAILATQVLLM-GAVEA---YRAGNT 116
Query: 175 PPNEVG------YPGGIFNPLNFAPT----DEAKEKELANGN 206
P + G YPGG F+PL A E K KE+ NG
Sbjct: 117 APGQFGEDLDRLYPGGPFDPLGLADDPDTFAELKVKEIKNGR 158
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI- 117
P+YL G LPGD G+D GL DP L+ Y +AEL++ RWAMLG VG LPE + G+
Sbjct: 486 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 545
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFH---YVEIRRWQDIKNPGSVNQDPIFKQYSL 174
P W+ AG A+ F++ + + L H + I Q + G+V ++ +
Sbjct: 546 FGEPIWFKAG-AQIFSAEGLNYFGQPALIHAKSLLAILATQVLLM-GAVEA---YRAGNT 600
Query: 175 PPNEVG------YPGGIFNPLNFAPT----DEAKEKELANGN 206
P + G YPGG F+PL A E K KE+ NG
Sbjct: 601 APGQFGEDLDRLYPGGPFDPLGLADDPDTFAELKVKEIKNGR 642
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 35/176 (19%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI 117
+P YLNG LPGD G+D GL DP L+ Y +AEL++ RWAMLG +G++ PE ++ I
Sbjct: 242 TPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDI 301
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEI--------------RRWQDIKNPGS 162
I P W+ AG A+ F+ ++ + L H I ++ G+
Sbjct: 302 PIAEPVWFKAG-AQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGNGLGN 360
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFA----PTDEAKEKELANGNNSAKLAYF 214
+D + YPGG F+PL A E K KE+ NG +LA F
Sbjct: 361 FGKD----------LDSLYPGGPFDPLGLANDPDTLAELKVKEIKNG----RLAMF 402
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 21/168 (12%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 125
Query: 118 INAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
W+ AG +Y + S + + ++ ++ +P+ +
Sbjct: 126 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNEPLGE 185
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 186 AEDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DPE EL N R AM + G + + T G I
Sbjct: 196 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 241
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 40/176 (22%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G++ PE+ K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEILEKNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG A+ F+ ++ ++ +L +VE R P
Sbjct: 126 GEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 183 EGLDPI------------YPGGAFDPLGLADDPDAFAELKVKELKNG----RLAMF 222
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DP+ EL N R AM V G + + T G I
Sbjct: 194 FDPLGLADDPDAFAELKVKELKNGRLAMFSVFGFFVQAIVTGKGPIQ 240
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 99/212 (46%), Gaps = 41/212 (19%)
Query: 26 SSGKLN-REVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDP 82
S G+++ R+ A K VSS + + + ++L + +P+YL G PGD G+D GL+ DP
Sbjct: 28 SGGRISMRKAASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADP 87
Query: 83 ENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFAS 134
E + E+++SRWAMLG +G + PE+ + G+ W+ AG +Y +
Sbjct: 88 ETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 147
Query: 135 SS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
S ++ + IL VE R P DPI YPGG F
Sbjct: 148 PSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGSF 193
Query: 187 NPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+PL A EA K KEL NG +LA F
Sbjct: 194 DPLGLADDPEAFAELKVKELKNG----RLAMF 221
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 183 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSIFGFFVQAIVTGKG 236
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 86/198 (43%), Gaps = 41/198 (20%)
Query: 40 SSSASFKVEAKGEWLPGLA---SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
SS F + +WL + +P YL G PGD G+D GL+ DPE K Y + EL+++
Sbjct: 32 SSGVEFYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 97 RWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSSTL--------FV 140
RWAMLG +G L PE+ K G W+ AG +Y + S +
Sbjct: 92 RWAMLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLA 151
Query: 141 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DE 196
++ IL +E R P DP+ YPG F+PL A E
Sbjct: 152 VQVILMGLIEGYRVNG--GPAGEGLDPL------------YPGESFDPLGLADDPDTFAE 197
Query: 197 AKEKELANGNNSAKLAYF 214
K KE+ NG +LA F
Sbjct: 198 LKVKEIKNG----RLAMF 211
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G +
Sbjct: 179 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQ 229
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 40/214 (18%)
Query: 23 LTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAE 80
+TG+ R+ KPV+SS+ + + ++L + SP+YL G PGD G+D GL+
Sbjct: 27 ITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSA 86
Query: 81 DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYF 132
DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG +Y
Sbjct: 87 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 146
Query: 133 ASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG 184
+ S ++ + IL VE R P DP+ YPGG
Sbjct: 147 GNPSLVHAQSILAIWACQVILMGAVEGYRVAG--GPLGEVVDPL------------YPGG 192
Query: 185 IFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
F+PL A EA K KE+ NG +LA F
Sbjct: 193 SFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 222
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 111/232 (47%), Gaps = 26/232 (11%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWL 54
MAT T S++ F A K S +TG+ R+ A K P SS + + + ++L
Sbjct: 1 MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIF 169
+ G+ W+ AG ++ F+ ++ L H I W + G+V +
Sbjct: 121 ARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---Y 176
Query: 170 KQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 RIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 224
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 110/231 (47%), Gaps = 24/231 (10%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVA--LKPVSSSASFKVEAKGEWL 54
MA T S++ F A K S +TG+ R+ A KPVSSS+ + + ++L
Sbjct: 1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFK 170
+ G+ + G ++ F+ ++ L H I W + G+V ++
Sbjct: 121 ARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YR 177
Query: 171 QYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 178 VAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 224
Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 51 GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
GE L + P Y GS FDPLGLAEDPE E+ N R AM + G +
Sbjct: 180 GEPLGEVVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233
Query: 111 VFTKIG 116
+ T G
Sbjct: 234 IVTGKG 239
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 21/222 (9%)
Query: 5 TTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA--SPTY 62
TT A ++ +P SR + S ++ +K S S + + + ++L + +P+Y
Sbjct: 10 TTLAGQSLLKPVNELSRKVGSSEARVTMRRTVKSTSDSIWYGAD-RPKYLGPFSGETPSY 68
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAP 121
L G GD G+D GL+ DPE + E++++RWAMLG +G L PE+ K G+
Sbjct: 69 LTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEA 128
Query: 122 QWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEV 179
W+ AG A+ F+ ++ L H I W + G+V ++ P E+
Sbjct: 129 VWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEG---YRVAGGPLGEI 184
Query: 180 G---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
YPGG F+PL A E K KE+ NG +LA F
Sbjct: 185 TDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 184 ITDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G L PE+ K G
Sbjct: 53 ATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGT 112
Query: 118 -INAPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPG 161
W+ AG +Y + S + + IL +E R P
Sbjct: 113 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVILMGLIEGYRVNG--GPA 170
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPG F+PL A E K KEL NG +LA F
Sbjct: 171 GEGLDPL------------YPGESFDPLGLADDPDTFAELKVKELKNG----RLAMF 211
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG++ FDPLGLA+DP+ EL N R AM + G + + T G +
Sbjct: 179 PGES-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQ 229
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 101/204 (49%), Gaps = 20/204 (9%)
Query: 23 LTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAE 80
L G+S R+ A K VSS + + + ++L + P+YL G PGD G+D GL+
Sbjct: 27 LFGNSRVTMRKSATKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 86
Query: 81 DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLF 139
DPE + E+++SRWAMLG +G + PE+ ++ G+ W+ AG ++ F+ +
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDY 145
Query: 140 VIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPT 194
+ L H I W + G+V ++ P EV YPGG F+PL A
Sbjct: 146 LGNPSLIHAQSILAIWASQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADD 202
Query: 195 DEA----KEKELANGNNSAKLAYF 214
EA K KEL NG +LA F
Sbjct: 203 PEAFAELKVKELKNG----RLAMF 222
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 184 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 78/168 (46%), Gaps = 34/168 (20%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWAMLGALGCVFPEILSKNGVK 124
Query: 118 INAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y S ++ ++ +L +VE R P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGN 206
DP+ YPGG F+PL A EA K KEL NG
Sbjct: 183 EGLDPL------------YPGGAFDPLGLADDPEAFAELKVKELKNGR 218
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 194 FDPLGLADDPEAFAELKVKELKNGRLAMTSMFGFFVQAIVTGKG 237
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 106/240 (44%), Gaps = 44/240 (18%)
Query: 1 MATVTTQASAAVF-RPCASKSRFLTGSSGKLNREVALKP---VSSSASFKVEAKGEWLPG 56
MA T S+ V R S S L G + R+ A KP SS + + + +L
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGP 60
Query: 57 LAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
L+ P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 115 IGI-INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIK 158
G+ W+ AG +Y + S ++ ++ +L VE R
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG-- 178
Query: 159 NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P DP+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 GPLGEVVDPL------------YPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 107/242 (44%), Gaps = 46/242 (19%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWL 54
MA T S++ F K S +TG+ R+ A K PVSS + + + ++L
Sbjct: 1 MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ +P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+F
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELF 120
Query: 113 TKIGII--------NAPQWYDAGKAEYFASSS--------TLFVIEFILFHYVEIRRWQD 156
+ G+ Q + G +Y + S ++ + +L VE R
Sbjct: 121 ARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAG 180
Query: 157 IKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLA 212
P V DP+ YPGG F+PL A EA K KE NG +LA
Sbjct: 181 --GPLGVVVDPL------------YPGGSFDPLGLAEDPEAFAELKVKETKNG----RLA 222
Query: 213 YF 214
F
Sbjct: 223 MF 224
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKG 239
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL + PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 81 PAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 140
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D YF + + ++ ++ V + G I
Sbjct: 141 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVIAEVVLL---------GGAEYYRIIN 191
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNS--AKLAYF 214
L + +PGG F+PL A D+A K KE+ NG + A L +F
Sbjct: 192 GLDL--EDKLHPGGPFDPLGLASDPDQAAILKAKEIKNGRLAMFAMLGFF 239
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 80/168 (47%), Gaps = 28/168 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 90 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 149
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D G YF + +I ++ V + G I
Sbjct: 150 GPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVVAEIVLV---------GGAEYYRIIN 200
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
L + +PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 201 GLDL--EDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNG----RLAMF 242
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI- 117
P+YL G LPGD G+D GL DP L+ Y +AEL++ RWAMLG VG LPE + G+
Sbjct: 259 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 318
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFH---YVEIRRWQDIKNPGSVNQDPIFKQYSL 174
P W+ AG A+ F++ + + L H + I Q + G+V ++ +
Sbjct: 319 FGEPIWFKAG-AQIFSAEGLNYFGQPALIHAKSLLAILATQVLLM-GAVEA---YRAGNT 373
Query: 175 PPNEVG------YPGGIFNPLNFAPT----DEAKEKELANGN 206
P + G YPGG F+PL A E K KE+ NG
Sbjct: 374 APGQFGEDLDRLYPGGPFDPLGLADDPDTFAELKVKEIKNGR 415
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 35/176 (19%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI 117
+P YLNG LPGD G+D GL DP L+ Y +AEL++ RWAMLG +G++ PE ++ I
Sbjct: 15 TPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDI 74
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEI--------------RRWQDIKNPGS 162
I P W+ AG A+ F+ ++ + L H I ++ G+
Sbjct: 75 PIAEPVWFKAG-AQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGNGLGN 133
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFA----PTDEAKEKELANGNNSAKLAYF 214
+D + YPGG F+PL A E K KE+ NG +LA F
Sbjct: 134 FGKD----------LDSLYPGGPFDPLGLANDPDTLAELKVKEIKNG----RLAMF 175
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 66 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVK 125
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + + Y +
Sbjct: 126 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWAS-----QVGLMGLIEGYRVGG 179
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 180 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 195 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 80/177 (45%), Gaps = 38/177 (21%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ +K G+
Sbjct: 53 ATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGV 112
Query: 118 -INAPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPG 161
W+ AG +Y + S + + IL VE R P
Sbjct: 113 QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNG--GPA 170
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPG F+PL A E K KE+ NG +LA F
Sbjct: 171 GEGLDPL------------YPGESFDPLGLADDPDTFAELKVKEIKNG----RLAMF 211
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 179 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 228
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 80/168 (47%), Gaps = 28/168 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 89 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 148
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D G YF + +I ++ V + G I
Sbjct: 149 GPEAVWFKTGALLLDGGTLNYFGKPIPINLILAVVAEIVLV---------GGAEYYRIIN 199
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
L + +PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 200 GLDL--EDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNG----RLAMF 241
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 81/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K GI
Sbjct: 63 SPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGIK 122
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 123 FGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIAG--GPLG 180
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A EA K KEL NG +LA F
Sbjct: 181 EVTDPI------------YPGGSFDPLGLAEDPEAFAELKVKELKNG----RLAMF 220
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE EL N R AM + G + + T G
Sbjct: 182 VTDPIYPGGS------FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 78/172 (45%), Gaps = 32/172 (18%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G A P YL G GD GFD GLA DP+ + Y AEL N RWAMLGV+G L PEV +
Sbjct: 167 LSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGVLGCLAPEVLS 226
Query: 114 KIGIINAPQ--WYDAGKAEYFASSSTLFVIEFILFH--------------YVEIRRWQDI 157
+ + P+ W+ G A S ++ L H + W++
Sbjct: 227 NVFGVPYPEPVWFKTG-ATILNGGSIDYLANPKLIHASNLLLTLVLELVFFFAAETWRE- 284
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANG 205
+ P+ K + YPGG+F+PL A EAK KE+ NG
Sbjct: 285 -----AGEGPLGKA-----QDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNG 326
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 85/172 (49%), Gaps = 21/172 (12%)
Query: 50 KGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
+ +WL L P+YL G LPGD G+D GL DP L Y +AE++++RWAMLG +G++
Sbjct: 396 RAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVV 455
Query: 108 LPEVFTKIGII--NAPQWYDAGKAEYFASSSTLFVIEFILFHY--VEIRRWQDIKNPGSV 163
PE+ G+ WY AG A+ F++ ++ L H V + + G+V
Sbjct: 456 TPELLAGNGVPFGEGAVWYKAG-AQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAV 514
Query: 164 NQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANG 205
+Y + G YPGG F+PL A +A K KEL NG
Sbjct: 515 EA----YRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNG 562
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DP+ L EL N R AM+ ++G + + TK G +
Sbjct: 78 FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 123
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DP+ L EL N R AM+ ++G + + TK G +
Sbjct: 539 FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 584
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ ++ +L +VE R P
Sbjct: 125 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--GPL 181
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 182 GEGLDPI------------YPGGAFDPLGLADDPDAFAELKVKEIKNG----RLAMF 222
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 20/200 (10%)
Query: 27 SGKLNREVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPEN 84
+G+++ KPV S + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 30 NGRVSMRKTTKPVPSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
Query: 85 LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEF 143
+ E+++SRWAMLG +G + PE+ ++ G+ W+ AG A+ F+ ++
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-AQIFSEGGLDYLGNP 148
Query: 144 ILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA- 197
L H I W + G+V ++ P EV YPGG F+PL A EA
Sbjct: 149 SLIHAQSILAIWATQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAF 205
Query: 198 ---KEKELANGNNSAKLAYF 214
K KEL NG +LA F
Sbjct: 206 AELKVKELKNG----RLAMF 221
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 183 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 86/198 (43%), Gaps = 41/198 (20%)
Query: 40 SSSASFKVEAKGEWLPGLA---SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
SS F + +WL + +P YL G PGD G+D GL+ DPE K Y + EL+++
Sbjct: 32 SSGVEFYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 97 RWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSSTL--------FV 140
RWAMLG +G L PE+ K G W+ AG +Y + S +
Sbjct: 92 RWAMLGALGCLTPELLAKNGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLA 151
Query: 141 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DE 196
++ IL +E R P DP+ YPG F+PL A E
Sbjct: 152 VQVILMGLIEGYRVNG--GPAGEGLDPL------------YPGESFDPLGLADDPDTFAE 197
Query: 197 AKEKELANGNNSAKLAYF 214
K KE+ NG +LA F
Sbjct: 198 LKVKEIKNG----RLAMF 211
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G +
Sbjct: 179 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQ 229
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 20/200 (10%)
Query: 27 SGKLNREVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPEN 84
+G+++ KPV S + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 30 NGRVSMRKTTKPVPSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
Query: 85 LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEF 143
+ E+++SRWAMLG +G + PE+ ++ G+ W+ AG A+ F+ ++
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-AQIFSEGGLDYLGNP 148
Query: 144 ILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA- 197
L H I W + G+V ++ P EV YPGG F+PL A EA
Sbjct: 149 SLIHAQSILAIWATQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAF 205
Query: 198 ---KEKELANGNNSAKLAYF 214
K KEL NG +LA F
Sbjct: 206 AELKVKELKNG----RLAMF 221
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 183 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 82/189 (43%), Gaps = 37/189 (19%)
Query: 40 SSSASFKVEAKGEWLPGLA---SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
SS F + +WL + +P YL G PGD G+D GL+ DPE K Y + EL+++
Sbjct: 32 SSGVEFYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 97 RWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSSTL--------FV 140
RWAMLG +G L PE+ K G W+ AG +Y + S +
Sbjct: 92 RWAMLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLA 151
Query: 141 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DE 196
++ IL +E R P DP+ YPG F+PL A E
Sbjct: 152 VQVILMGLIEGYRVNG--GPAGEGLDPL------------YPGESFDPLGLADDPDTFAE 197
Query: 197 AKEKELANG 205
K KE+ NG
Sbjct: 198 LKVKEIKNG 206
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 22/167 (13%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ G+
Sbjct: 51 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPF 110
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y +S+ + + ++ I+ VN P+ +
Sbjct: 111 GEAVWFKAGAQIFQEGGLDYLGNSNLVHAQSILAILGTQVLLMGAIEGY-RVNGGPLGEG 169
Query: 172 YSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ YPGG F+PL A E K KE+ NG +LA F
Sbjct: 170 L-----DKLYPGGSFDPLGLADDPDTFSELKVKEIKNG----RLAMF 207
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 179 FDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 222
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 106/242 (43%), Gaps = 47/242 (19%)
Query: 1 MATVTTQASAAVF-RPCASKSRFLTGSSGKLNREVALKPVSSSASF-------KVEAKGE 52
MA T S+ V R S S L G + R+ A KP +++S +V G
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGP 60
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
L G P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+
Sbjct: 61 -LSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 113 TKIGI-INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQD 156
+ G+ W+ AG +Y + S ++ ++ +L VE R
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 179
Query: 157 IKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLA 212
P DP+ YPGG F+PL A EA K K++ NG +LA
Sbjct: 180 --GPLGEVVDPL------------YPGGAFDPLGLADDPEACAELKVKKIKNG----RLA 221
Query: 213 YF 214
F
Sbjct: 222 MF 223
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 81/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ +K G+
Sbjct: 66 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 125
Query: 118 INAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y S ++ + +L ++E R P
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGG--GPLG 183
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PLN A EA K KEL NG +LA F
Sbjct: 184 EGLDPL------------YPGGAFDPLNLAEDPEAFSELKVKELKNG----RLAMF 223
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPL LAEDPE EL N R AM + G + + T G I
Sbjct: 195 FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|359754923|gb|AEV59651.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis splendens]
Length = 170
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 16/112 (14%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE +W E++N R+AMLG G
Sbjct: 60 WFASEQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 118
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYV 149
+ PE+ K G+I A W+ AG Y+A + TLFV+E L +
Sbjct: 119 IAPEILGKAGLIPEETALPWFQTGVIPPAGTYNYWADNYTLFVLEMALMXFA 170
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 29/206 (14%)
Query: 24 TGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAED 81
G+S + ++V ++ F + +WL + +P+YL G PGD G+D GL+ D
Sbjct: 17 VGASARGQKQV----TRAAVEFYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSAD 72
Query: 82 PENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQ--WYDAGKAEYFASSSTLF 139
PE Y + EL+++RWAMLG +G + PE+ +K + + W+ AG A+ FA +
Sbjct: 73 PETFASYRELELIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAG-AQIFADGGLDY 131
Query: 140 VIEFILFH---YVEIRRWQDIKNPGS----VNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 192
+ L H + I Q + G+ VN P+ + + +PGG F+PL A
Sbjct: 132 LGNSSLVHAQSILAILGCQVVLMGGAEAFRVNGGPLGEDL-----DKLHPGGAFDPLGLA 186
Query: 193 PT----DEAKEKELANGNNSAKLAYF 214
E K KE+ NG +LA F
Sbjct: 187 DDPDTFSELKVKEIKNG----RLAMF 208
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 180 FDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 223
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 35/171 (20%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A P+YL G PGD G+D GL+ DPE Y + EL++SRWA+LG +G+L PE + G
Sbjct: 52 AVPSYLKGEFPGDYGWDTAGLSADPETFARYREIELIHSRWALLGALGILTPEYLQRSGA 111
Query: 118 IN---APQWYDAGKAEY---------------FASSSTLFVIEFILFHYVEIRRWQDIKN 159
++ A W+ AG + + S + + +L E R+ +
Sbjct: 112 VDFGEAAVWFKAGASIFGDDGLNYLGNPQLIHAQSIVATLLAQIVLVGTAEAYRYAG-EG 170
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGN 206
P + D + YPGG F+PL EA K KE+ NG
Sbjct: 171 PVDTSGDKL------------YPGGFFDPLGLGDDPEALAELKVKEIKNGR 209
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 81/175 (46%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL+G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKF 125
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + IL VE R P
Sbjct: 126 GEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--GPLGE 183
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+DPI YPGG F+PL A EA K KEL NG +LA F
Sbjct: 184 VEDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 222
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
P Y GS FDPLGLA+DPE EL N R AM + G + + T G I
Sbjct: 187 PIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 23/217 (10%)
Query: 10 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSL 67
A P AS+ +TG+ R+ KPV+SS+ + + ++L + +P+YL G
Sbjct: 17 AVKLSPSASE---ITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGEAPSYLTGEF 73
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDA 126
PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+ W+ A
Sbjct: 74 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 133
Query: 127 GKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---Y 181
G ++ F+ ++ L H I W + G+V ++ P EV Y
Sbjct: 134 G-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRVAGGPLGEVVDPLY 189
Query: 182 PGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
PGG F+PL A EA K KE+ NG +LA F
Sbjct: 190 PGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 222
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG 56
MAT T S+ F A K + L G++ R+ KPVSS + + + ++L
Sbjct: 1 MATSTMALSSPSFAGKAVKLTPSAPGLMGNARVSMRKSVGKPVSSGSPWYGPDRVKYLGP 60
Query: 57 LAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 115 IGI-INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIK 158
G+ W+ AG +Y + S ++ ++ +L VE R
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG-- 178
Query: 159 NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P DPI YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 GPLGEVTDPI------------YPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 184 VTDPIYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 81/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K GI
Sbjct: 72 SPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGIK 131
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 132 FGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIAG--GPLG 189
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A EA K KEL NG +LA F
Sbjct: 190 EVTDPI------------YPGGSFDPLGLAEDPEAFAELKVKELKNG----RLAMF 229
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE EL N R AM + G + + T G
Sbjct: 191 VTDPIYPGGS------FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 244
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ +K G+
Sbjct: 66 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 125
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + + ++ + +L ++E R P
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGG--GPLG 183
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PLN A EA K KEL NG +LA F
Sbjct: 184 EGLDPL------------YPGGAFDPLNLAEDPEAFSELKVKELKNG----RLAMF 223
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 22/228 (9%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA 58
MAT T S++ F A K+ G + R+ K PVSS + + + +L L+
Sbjct: 1 MATATMALSSSTFAGKAVKNLPALGEARITMRKTVAKAKPVSSGSPWYGSDRVLYLGPLS 60
Query: 59 S--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G
Sbjct: 61 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 120
Query: 117 I-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYS 173
+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 VKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAG 176
Query: 174 LPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 GPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 220
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 182 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 36/175 (20%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ K GI
Sbjct: 49 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIP 108
Query: 118 INAPQWYDAGKAEYFASSSTLF-----------VIEFILFHYVEIRRWQDIK-NPGSVNQ 165
W+ AG A+ FA + +I + F V + + + N G + +
Sbjct: 109 FGEAVWFKAG-AQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGE 167
Query: 166 --DPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ +PGG F+PL A E K KE+ NG +LA F
Sbjct: 168 GLDPL------------HPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 206
Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 178 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQ 224
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 25/230 (10%)
Query: 1 MATVTTQASAAVFRPCASKS----RFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLP- 55
MAT T Q SA V + + R + G+ G+ + +K S + + P
Sbjct: 1 MATSTIQQSAFVGQTLLKQQNELVRKVGGNGGRFSMRRTVKSAPQSIWYGPDRPKYLGPF 60
Query: 56 GLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K
Sbjct: 61 SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKN 120
Query: 116 GI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL 174
G+ W+ AG ++ F ++ L H I + V + + Y +
Sbjct: 121 GVKFGEAVWFKAG-SQIFQEGGLDYLGNPNLIHAQSILAIWACQ----VVLMGLIEGYRV 175
Query: 175 PPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A +A K KEL NG +LA F
Sbjct: 176 GGGPLGEGLDKIYPGGAFDPLGLADDPDAFAELKVKELKNG----RLAMF 221
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 193 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 30/169 (17%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 91 PEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 150
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN-QDPIF 169
P+ W+ D G YF + +I ++ V + + + +N +D +
Sbjct: 151 GPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKL- 209
Query: 170 KQYSLPPNEVGYPGGIFNPLNFA-PTDEA---KEKELANGNNSAKLAYF 214
+PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 210 -----------HPGGPFDPLGLANDPDQAALLKVKEIKNG----RLAMF 243
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 87/179 (48%), Gaps = 23/179 (12%)
Query: 50 KGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
+G WL L+ +P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G +
Sbjct: 51 RGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAMLGALGCV 110
Query: 108 LPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD 166
PE+ K G I P W+ AG A+ F ++ L H I ++ V
Sbjct: 111 TPELLAKNGTPIAEPVWFKAG-AQIFQEGGLDYLGNAGLIHAQSILATLAVQ----VILM 165
Query: 167 PIFKQYSLPPNEVG------YPGG-IFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ Y + G +PGG F+PL A +A K KE+ NG +LA F
Sbjct: 166 GAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNG----RLAMF 220
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
PG FDPLGLAEDP+ E+ N R AM + G + + T
Sbjct: 187 PGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 232
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 38/177 (21%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + P++ +K G+
Sbjct: 53 ATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPKLLSKNGV 112
Query: 118 -INAPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPG 161
+ W+ AG +Y + S + + IL VE R P
Sbjct: 113 QFSEALWFKAGAQIFQEGGLDYLGNLSLVHAQNIVATLACQVILMGLVEGYRVNG--GPA 170
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPG F+PL A E K KE+ NG +LA F
Sbjct: 171 GEGLDPL------------YPGKSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 211
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 111/232 (47%), Gaps = 26/232 (11%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVA--LKPVSSSASFKVEAKGEWL 54
MA T S++ F A K S +TG+ R+ A KPVSS + + + ++L
Sbjct: 1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIF 169
+ G+ W+ AG ++ F+ ++ L H I W + G+V +
Sbjct: 121 ARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---Y 176
Query: 170 KQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 RVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 224
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K GI
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGIK 122
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ ++ +L ++E R
Sbjct: 123 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYR-------- 173
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA----PTDEAKEKELANGNNSAKLAYF 214
V P+ + ++ YPGG F+PL A E K KEL NG +LA F
Sbjct: 174 -VGGGPLDEGL-----DIIYPGGAFDPLGLADDPDTAAELKVKELKNG----RLAMF 220
Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DP+ EL N R AM + G + + T G
Sbjct: 192 FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 79/177 (44%), Gaps = 39/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE Y + E++++RWAMLG +G + PE+ K G+
Sbjct: 46 SPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVS 105
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F S + IL E R + + PG
Sbjct: 106 FGEAVWFKAG-AQIFGSDGLNYLGNPSLVHAQSIIATLACQVILMGGAEAYR-ANGEGPG 163
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
D + YPGG F+PL A E K KE+ NG +LA F
Sbjct: 164 VEGLDSL------------YPGGPFDPLGLADDPDTFAELKTKEIKNG----RLAMF 204
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 54 LPGLASPTYLNGSLPGDNG---------FDPLGLAEDPENLKWYVQAELVNSRWAMLGVV 104
L G A NG PG G FDPLGLA+DP+ E+ N R AM +
Sbjct: 148 LMGGAEAYRANGEGPGVEGLDSLYPGGPFDPLGLADDPDTFAELKTKEIKNGRLAMFSMF 207
Query: 105 GMLLPEVFTKIGII 118
G + + T G I
Sbjct: 208 GFFVQAIVTGKGPI 221
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ +K G+
Sbjct: 66 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 125
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W V + + Y +
Sbjct: 126 FGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWAS-----QVVLMGLIEGYRIGG 179
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PLN A EA K KEL NG +LA F
Sbjct: 180 GPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNG----RLAMF 223
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPL LAEDPE EL N R AM + G + + T G I
Sbjct: 195 FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 20/226 (8%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS- 59
MA + + + S + L G+ R+ KPVSS + + + ++L +
Sbjct: 5 MALSSPSLAGKAVKLGPSAASELLGNGRISMRKTIAKPVSSGSPWYGADRVKYLGPFSGE 64
Query: 60 -PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 125 FGEAVWFKAG-AQIFSDGGLDYLGNSSLVHAQSILAIWATQVVLMGAVEG---YRIAGGP 180
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 184 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 110/231 (47%), Gaps = 25/231 (10%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLP 55
MAT S++ F A K S L G + R+ A K PVSSS+ + + +L
Sbjct: 1 MATTAMALSSSSFAGKAVKDLPSSALFGEARVTMRKTAAKAKPVSSSSPWYGSDRVLYLG 60
Query: 56 GLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 PLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 114 KIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFK 170
+ G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 RNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YR 176
Query: 171 QYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 VAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 106/236 (44%), Gaps = 43/236 (18%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS- 59
+++ T A P A + + G++ R+ A K VSS + + + ++L +
Sbjct: 8 LSSPTLAGQAVKLSPTAPE---IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGE 64
Query: 60 -PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 124
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + +L VE R P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A EA K KEL NG +LA F
Sbjct: 183 EVTDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 222
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 184 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 96/190 (50%), Gaps = 20/190 (10%)
Query: 37 KPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
KPVSSS+ + + ++L + SP+YL G PGD G+D GL+ DPE + E++
Sbjct: 5 KPVSSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 64
Query: 95 NSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR 153
+SRWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I
Sbjct: 65 HSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILA 123
Query: 154 -WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELAN 204
W + G+V ++ P EV YPGG F+PL A EA K KEL N
Sbjct: 124 IWACQVILMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKN 180
Query: 205 GNNSAKLAYF 214
G +LA F
Sbjct: 181 G----RLAMF 186
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE EL N R AM + G + + T G
Sbjct: 148 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 201
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 75/169 (44%), Gaps = 22/169 (13%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG-II 118
PTYLNG+L GD G+DPLGL +D ++ Y EL+++RWAML G+++PE G I
Sbjct: 113 PTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWAMLAAAGIIIPEGLQANGAAI 172
Query: 119 NAPQWYD-------AGKAEYFASSSTLF----------VIEFILFHYVEIRRWQDIKNPG 161
W++ G YFA + VIE L VE R PG
Sbjct: 173 KGGTWFETGAEMLNGGTLNYFAVPWGIINNPLPLFLVVVIEVALLGAVERYRQSGEGPPG 232
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGN 206
F + YPGG F+PL A E K KE+ NG
Sbjct: 233 YSPGVGKFDSSIFSGLDNLYPGGPFDPLGLADDPETFAELKVKEIKNGR 281
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DPE E+ N R A++ V+G + T G
Sbjct: 257 FDPLGLADDPETFAELKVKEIKNGRLALISVLGFAVQSYVTGEG 300
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 21/168 (12%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 125
Query: 118 INAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 126 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 186 AEDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DPE EL N R AM + G + + T G I
Sbjct: 196 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 241
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 30/169 (17%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 93 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 152
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN-QDPIF 169
P+ W+ D G YF + +I ++ V + + + +N +D +
Sbjct: 153 GPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKL- 211
Query: 170 KQYSLPPNEVGYPGGIFNPLNFA-PTDEA---KEKELANGNNSAKLAYF 214
+PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 212 -----------HPGGPFDPLGLANDPDQAALLKVKEIKNG----RLAMF 245
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + + Y +
Sbjct: 125 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAS-----QVVLMGLIEGYRVGG 178
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KEL NG +LA F
Sbjct: 179 GPLGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 222
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 194 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 109/230 (47%), Gaps = 24/230 (10%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALKPVSSSAS-FKVEAKGEWLPG 56
MAT T S+ F A K S L G + R+ KP ++S S + + +L
Sbjct: 1 MATTTMALSSPAFAGKAVKNVPSSALFGEARVTMRKTGAKPKATSGSPWYGPDRVLYLGP 60
Query: 57 LAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
L+ P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 115 IGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQ 171
G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 NGVQFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRI 176
Query: 172 YSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 177 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 222
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGNG 237
Query: 117 II 118
I
Sbjct: 238 PI 239
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ K G
Sbjct: 57 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQF 116
Query: 119 NAPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S + ++ IL VE R P
Sbjct: 117 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNG--GPAGE 174
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPG F+PL A E K KE+ NG +LA F
Sbjct: 175 GLDPL------------YPGESFDPLGLADDPDTFAELKVKEIKNG----RLAMF 213
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 181 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQ 231
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGVK 123
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ ++ +L ++E R P
Sbjct: 124 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRIGG--GPL 180
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A +A K KEL NG +LA F
Sbjct: 181 GEGLDPL------------YPGGAFDPLGLADDPDAFAELKVKELKNG----RLAMF 221
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 111/232 (47%), Gaps = 26/232 (11%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWL 54
MA T S++ F A K S +TG+ R+ A K PVSS + + + ++L
Sbjct: 1 MAASTMALSSSSFVGKAVKLSPSSSEITGNGKVTMRKTATKAKPVSSGSPWYGPDRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIF 169
+ G+ W+ AG ++ F+ ++ L H I W + G+V +
Sbjct: 121 ARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---Y 176
Query: 170 KQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 RVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 224
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 94/205 (45%), Gaps = 40/205 (19%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
R+ A K VSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 35 RKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 94
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS----- 136
+ E+++SRWAMLG +G + PE+ ++ G+ W+ AG +Y + S
Sbjct: 95 ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 154
Query: 137 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP 193
++ + IL VE R P DPI YPGG F+PL A
Sbjct: 155 SILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGSFDPLGLAD 200
Query: 194 TDEA----KEKELANGNNSAKLAYF 214
EA K KEL NG +LA F
Sbjct: 201 DPEAFAELKVKELKNG----RLAMF 221
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 183 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 21/168 (12%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 125
Query: 118 INAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 126 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 186 AEDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DPE EL N R AM + G + + T G I
Sbjct: 196 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 241
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 102/202 (50%), Gaps = 21/202 (10%)
Query: 26 SSGKLN-REVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDP 82
S G+++ R+ A K VSS + + + ++L + +P+YL G PGD G+D GL+ DP
Sbjct: 28 SGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADP 87
Query: 83 ENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVI 141
E + E+++SRWAMLG +G + PE+ + G+ W+ AG ++ F+ ++
Sbjct: 88 ETFARNRELEVIHSRWAMLGALGSVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLG 146
Query: 142 EFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDE 196
L H I W + G+V ++ P EV YPGG F+PL A E
Sbjct: 147 NPSLIHAQSILAIWASQVILMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADDPE 203
Query: 197 A----KEKELANGNNSAKLAYF 214
A K KEL NG +LA F
Sbjct: 204 AFAELKVKELKNG----RLAMF 221
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 183 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|384248196|gb|EIE21681.1| chlorophyll a/b-binding protein CP29 [Coccomyxa subellipsoidea
C-169]
Length = 267
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 85/210 (40%), Gaps = 62/210 (29%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPE---------------------- 83
K + WLP P +L+GSLPGD GFDPL L++ E
Sbjct: 47 KFDGDALWLPNTQRPAWLDGSLPGDRGFDPLELSKPSEFLQVDLDQSDINKSVNKAGGIV 106
Query: 84 ----------------------NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAP 121
L+ + + EL++ RWAMLG +G+++ E T +
Sbjct: 107 GKYSSSKVQATGAALSPYSEVFGLQRFRETELIHGRWAMLGALGVVIAEATTGV------ 160
Query: 122 QWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGY 181
W DAGK E + F + F + + W ++ G I++ S E Y
Sbjct: 161 SWVDAGKVELDGTQYLGFSLPFSISQLI----WIEVLLVGGAE---IYRNRSTDLQERIY 213
Query: 182 PGGIFNPLNFAPTD-----EAKEKELANGN 206
PGG+F+PL A D + +E E+ +G
Sbjct: 214 PGGLFDPLKLASDDSQRTFKLREAEIKHGR 243
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 28/168 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 89 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 148
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D YF + + ++ ++ V + G I
Sbjct: 149 GPEAVWFKTGALLLDGNTLYYFGKNIPINLVLAVIAEVVLV---------GGAEYYRIIN 199
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
L + +PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 200 GLDL--EDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNG----RLAMF 241
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 67 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 127 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRVAGGP 182
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 183 LGEITDPLYPGGSFDPLGLAEDPEAFAELKVKELKNG----RLAMF 224
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE EL N R AM + G + + T G
Sbjct: 186 ITDPLYPGGS------FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 117 II 118
I
Sbjct: 240 PI 241
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 22/227 (9%)
Query: 2 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKP--VSSSASFKVEAKGEWLPGLAS 59
AT+ + A V +P + +R + G R+ A KP +S + + + +L +
Sbjct: 4 ATMALTSRALVGKPATTSTRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPFSG 63
Query: 60 --PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSL 174
W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 124 KFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRVAGG 179
Query: 175 PPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 105/240 (43%), Gaps = 44/240 (18%)
Query: 1 MATVTTQASAAVF-RPCASKSRFLTGSSGKLNREVALKP---VSSSASFKVEAKGEWLPG 56
MA T S+ V R S S L G + R+ A KP SS + + + +L
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGP 60
Query: 57 LAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
L+ P+YL G PGD G+D GL+ DPE + EL++SRWAMLG +G + PE+ +
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLAR 120
Query: 115 IGI-INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIK 158
G+ W+ AG +Y + S ++ ++ +L VE R
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG-- 178
Query: 159 NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P DP+ YPGG F+PL A EA K KE+ G +LA F
Sbjct: 179 GPLGEVVDPL------------YPGGAFDPLGLADDPEAFAELKVKEIKKG----RLAMF 222
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 36/175 (20%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 66 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVK 125
Query: 118 INAPQWYDAGKAEYFA--------------SSSTLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG A+ F+ + S L + F + I ++ P
Sbjct: 126 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVGGGPLGE 184
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 185 GLDPL------------YPGGAFDPLGLADDPEAFAELKVKELKNG----RLAMF 223
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE EL N R AM + G + + T G I
Sbjct: 195 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 105/239 (43%), Gaps = 43/239 (17%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGL 57
MA+ T S+ F A K S +G+++ KPV S + + + +L L
Sbjct: 1 MASTTMALSSPSFAGKAVKFSPSTPEIQGTGRVSMRKTTKPVPSGSPWYGPDRVLYLGPL 60
Query: 58 AS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 116 GI-INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKN 159
G+ W+ AG +Y + S ++ + IL VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--G 178
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P DP+ YPGG F+PL FA EA K KE+ NG +LA F
Sbjct: 179 PLGEVTDPL------------YPGGSFDPLGFADDPEAFAELKVKEIKNG----RLAMF 221
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 81/178 (45%), Gaps = 39/178 (21%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ K G
Sbjct: 49 AVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGG 108
Query: 118 INAPQ--WYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNP 160
+ + W+ AG +Y S + + + + IL +E R P
Sbjct: 109 TSFGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNG--GP 166
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPG F+PL A E K KE+ NG +LA F
Sbjct: 167 AGEGLDPL------------YPGESFDPLGLADDPDTFAELKIKEIKNG----RLAMF 208
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 176 PGES-FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKG 223
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 81/178 (45%), Gaps = 39/178 (21%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ K G
Sbjct: 46 AVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGG 105
Query: 118 INAPQ--WYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNP 160
+ + W+ AG +Y S + + + + IL +E R P
Sbjct: 106 TSFGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNG--GP 163
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPG F+PL A E K KE+ NG +LA F
Sbjct: 164 AGEGLDPL------------YPGESFDPLGLADDPDTFAELKIKEIKNG----RLAMF 205
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 173 PGES-FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKG 220
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 80/176 (45%), Gaps = 40/176 (22%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG A+ F+ ++ ++ +L +VE R P
Sbjct: 126 GEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 183 EGLDPI------------YPGGAFDPLGLADDPDAFAELKVKELKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 80/177 (45%), Gaps = 38/177 (21%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
++P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G++ PE+ K G+
Sbjct: 53 STPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGIVTPELLQKNGV 112
Query: 118 -INAPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPG 161
W+ AG Y + S + ++ +L VE R P
Sbjct: 113 QFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVVLLGLVEGYRVNG--GPA 170
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPG F+PL A E K KE+ NG +LA F
Sbjct: 171 GEGLDPL------------YPGESFDPLGLADDPDTFAELKVKEIKNG----RLAMF 211
Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG++ FDPLGLA+DP+ E+ N R AM G + + T G I
Sbjct: 179 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSSFGFFVQAIVTGKGPIQ 229
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 36/175 (20%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ K GI
Sbjct: 46 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIP 105
Query: 118 INAPQWYDAGKAEYFASSSTLF-----------VIEFILFHYVEIRRWQDIK-NPGSVNQ 165
W+ AG ++ FA + +I + F V + + + N G + +
Sbjct: 106 FGEAVWFKAG-SQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGE 164
Query: 166 --DPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ +PGG F+PL A E K KE+ NG +LA F
Sbjct: 165 GLDPL------------HPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 203
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 175 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQ 221
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 110/232 (47%), Gaps = 26/232 (11%)
Query: 1 MATVTTQASAAVFRPCA----SKSRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWL 54
MA T S++ F A S S +TG+ R+ K P SSS+ + + ++L
Sbjct: 1 MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ +P+YL G P D G+D GL+ DPE + E+++ RWAMLG +G + PE+F
Sbjct: 61 GPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELF 120
Query: 113 TKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIF 169
+ GI W+ AG A+ F+ ++ L H I W + G+V +
Sbjct: 121 ARNGIKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---Y 176
Query: 170 KQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 RVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 224
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 189 PLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|145345103|ref|XP_001417062.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144577288|gb|ABO95355.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 252
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG +P YL+G++ GD GFDPL L +PE L + +AEL+N RWAM G+L +
Sbjct: 43 WYPGAVAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDA- 101
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG 161
+ P+W++AG +Y L + + +E R + G
Sbjct: 102 -----VGLPKWWEAGAVDYGMDFQQLVGFQVVAMSILEAARTRGFMKSG 145
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 94/205 (45%), Gaps = 40/205 (19%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
R+ A K VSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 36 RKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 95
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS----- 136
+ E+++SRWAMLG +G + PE+ ++ G+ W+ AG +Y + S
Sbjct: 96 ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 155
Query: 137 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP 193
++ + +L VE R P DPI YPGG F+PL A
Sbjct: 156 SILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPI------------YPGGSFDPLGLAD 201
Query: 194 TDEA----KEKELANGNNSAKLAYF 214
EA K KEL NG +LA F
Sbjct: 202 DPEAFAELKVKELKNG----RLAMF 222
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 184 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 66 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVK 125
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + + Y +
Sbjct: 126 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWAS-----QVVLMGLIEGYRVGG 179
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 180 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 195 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 94/205 (45%), Gaps = 40/205 (19%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
R+ A K VSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 36 RKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 95
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS----- 136
+ E+++SRWAMLG +G + PE+ ++ G+ W+ AG +Y + S
Sbjct: 96 ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 155
Query: 137 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP 193
++ + +L VE R P DPI YPGG F+PL A
Sbjct: 156 SILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPI------------YPGGSFDPLGLAD 201
Query: 194 TDEA----KEKELANGNNSAKLAYF 214
EA K KEL NG +LA F
Sbjct: 202 DPEAFAELKVKELKNG----RLAMF 222
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 184 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 66 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVK 125
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + + Y +
Sbjct: 126 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWAS-----QVVLMGLIEGYRVGG 179
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 180 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 195 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 80/177 (45%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILAKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ + +L +VE R P
Sbjct: 125 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPL 181
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 182 GEGLDPI------------YPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|116779436|gb|ABK21281.1| unknown [Picea sitchensis]
gi|116780920|gb|ABK21880.1| unknown [Picea sitchensis]
gi|116785937|gb|ABK23915.1| unknown [Picea sitchensis]
gi|116792210|gb|ABK26276.1| unknown [Picea sitchensis]
gi|224284045|gb|ACN39760.1| unknown [Picea sitchensis]
gi|224285097|gb|ACN40276.1| unknown [Picea sitchensis]
Length = 288
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 84/204 (41%), Gaps = 78/204 (38%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYV----------------------- 89
WLPG +P +L+GSL GD GFDPLGL + E L++ V
Sbjct: 69 WLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDP 128
Query: 90 -------------------QAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAE 130
+ EL++ RWAMLGV+G L E FT I W DAGK E
Sbjct: 129 DIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVEGFTGI------YWQDAGKVE 182
Query: 131 ------YFASS-----STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV 179
YF S STL +IE +L Y+E +R ++ P
Sbjct: 183 LVEGSSYFGFSLPFNMSTLILIEVLLLGYIEFQRNAEVD-----------------PETR 225
Query: 180 GYPGG-IFNPLNFAPTDEAKEKEL 202
YPGG F+P A DE K+ L
Sbjct: 226 LYPGGKYFDPFGLA-VDEIKKDRL 248
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 85/177 (48%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + EL++SRWAMLG +G + PE+ +K G+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ ++ +L +VE R
Sbjct: 123 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR-------- 173
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
V P+ + ++V YPGG F+PL A E K KEL NG +LA F
Sbjct: 174 -VGGGPLGEGL----DKV-YPGGAFDPLGLADDPDTFAELKVKELKNG----RLAMF 220
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 183 LDKVYPG-GAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 93/205 (45%), Gaps = 40/205 (19%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
R+ A K VSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 35 RKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 94
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS----- 136
+ E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S
Sbjct: 95 ELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 154
Query: 137 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP 193
++ + IL VE R P DPI YPGG F+PL A
Sbjct: 155 SILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGSFDPLGLAD 200
Query: 194 TDEA----KEKELANGNNSAKLAYF 214
EA K KEL NG +LA F
Sbjct: 201 DPEAFAELKVKELKNG----RLAMF 221
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 183 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 93/205 (45%), Gaps = 40/205 (19%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
R+ A K VSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 16 RKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 75
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS----- 136
+ E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S
Sbjct: 76 ELEVIHSRWAMLGALGCVFPELLARNGVKFGEACWFKAGSQIFSEGGLDYLGNQSLIHAQ 135
Query: 137 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP 193
++ + IL VE R P DPI YPGG F+PL A
Sbjct: 136 SILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGSFDPLALAD 181
Query: 194 TDEA----KEKELANGNNSAKLAYF 214
EA K KEL NG +LA F
Sbjct: 182 DPEAFAELKVKELKNG----RLAMF 202
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PEV +K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLSKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W V + + Y +
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWAS-----QVVLMGLIEGYRVGG 178
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KEL NG +LA F
Sbjct: 179 GPLGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 222
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG + FDPLGLA+DPE EL N R AM + G + + T G I
Sbjct: 185 LDKIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 76/170 (44%), Gaps = 36/170 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G PGD G+D GL+ DPE K + E++++RWAMLG +G + PEV K +
Sbjct: 54 PAYLTGEFPGDYGWDTSGLSADPETFKRFRTVEVIHARWAMLGALGCIFPEVLEKYSGVE 113
Query: 120 APQ--WYDAGKAEYFA----------------SSSTLFVIEFILFHYVEIRRWQDIKNPG 161
+ W+ AG A+ FA S V++ +L VEI R G
Sbjct: 114 FGEAVWFKAG-AQIFADGGLNYLGNPGLVHAQSIVATLVVQVLLMGAVEIYRANGEGPSG 172
Query: 162 -SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
QD + YPGG F+PL A E K KEL NG
Sbjct: 173 FGEGQDNL------------YPGGAFDPLGLADDPDTLAELKVKELKNGR 210
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DP+ L EL N R AM+ ++G + + T G ++
Sbjct: 186 FDPLGLADDPDTLAELKVKELKNGRLAMMSMLGFFVQAIVTGKGPLD 232
>gi|116790890|gb|ABK25779.1| unknown [Picea sitchensis]
Length = 288
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 84/204 (41%), Gaps = 78/204 (38%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYV----------------------- 89
WLPG +P +L+GSL GD GFDPLGL + E L++ V
Sbjct: 69 WLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDP 128
Query: 90 -------------------QAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAE 130
+ EL++ RWAMLGV+G L E FT I W DAGK E
Sbjct: 129 DIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVEGFTGI------YWQDAGKVE 182
Query: 131 ------YFASS-----STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV 179
YF S STL +IE +L Y+E +R ++ P
Sbjct: 183 LVEGSSYFGFSLPFNMSTLILIEVLLLGYIEFQRNAEVD-----------------PETR 225
Query: 180 GYPGG-IFNPLNFAPTDEAKEKEL 202
YPGG F+P A DE K+ L
Sbjct: 226 LYPGGKYFDPFGLA-VDEIKKDRL 248
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 21/168 (12%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 48 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 107
Query: 118 INAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 108 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 167
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 168 AEDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 206
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DPE EL N R AM + G + + T G I
Sbjct: 178 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 223
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PEV +K G+
Sbjct: 43 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEVLSKNGVK 102
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ ++ +L +VE R P
Sbjct: 103 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--GPL 159
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 160 GEGLDPI------------YPGGAFDPLGLADDPDAFAELKVKEIKNG----RLAMF 200
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 81/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 68 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 127
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 128 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLG 185
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 186 EVVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 225
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 187 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 35/179 (19%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A+P+YL G PGD G+D GL+ DPE Y + E+++SRWA+LG +G++ PE+ K G
Sbjct: 51 ATPSYLKGEYPGDYGWDTAGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGG 110
Query: 118 INAPQ--WYDAGKAEYFASSSTLFVIEFILFHYVEI--------------RRWQDIKNPG 161
+ + W+ AG A+ F++ ++ L H I ++ P
Sbjct: 111 VKFQEAVWFKAG-AQIFSADGLNYLGNPSLVHAQSIIATVATQVILLGLAEGYRVNGGPA 169
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNS--AKLAYF 214
DP+ YPGG F+PL A E K KE+ NG + A L +F
Sbjct: 170 GEITDPL------------YPGGAFDPLGLADDPDTFAELKVKEIKNGRLAQFAALGFF 216
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 54 LPGLASPTYLNGSLPGD--------NGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
L GLA +NG G+ FDPLGLA+DP+ E+ N R A +G
Sbjct: 155 LLGLAEGYRVNGGPAGEITDPLYPGGAFDPLGLADDPDTFAELKVKEIKNGRLAQFAALG 214
Query: 106 MLLPEVFTKIGIIN 119
+ + T G I
Sbjct: 215 FFVQAIVTGKGPIQ 228
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 110/231 (47%), Gaps = 25/231 (10%)
Query: 1 MATVTTQASAAVFRPCAS---KSRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLP 55
MA T S++ F A S +TG+ R+ K PVSS + + + ++L
Sbjct: 1 MAAATMAISSSSFAGKAVNVPSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLG 60
Query: 56 GLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
+ +P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+F
Sbjct: 61 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFA 120
Query: 114 KIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFK 170
+ G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 RNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YR 176
Query: 171 QYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 VAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 188 PLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 82/180 (45%), Gaps = 28/180 (15%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPE--------NLKWYVQAELVNSRWAMLGVVG 105
+P +S +YL+G+LPGD GFDPLGL DP + +W AEL+++RWAMLG G
Sbjct: 5 MPTASSLSYLDGTLPGDFGFDPLGLF-DPSSGGSAGFLSQRWLHTAELMHARWAMLGAAG 63
Query: 106 MLLPEVFTKIGII---NAPQWYDAG-------KAEYFASSSTLFVIEFILFHYVEIRRWQ 155
L PE +I W+ G +Y LF ++ ++ E R
Sbjct: 64 CLAPEYLAHEKVIPKATGLLWFKTGFLPQASAGFDYGLPLGVLFAVQMVMMGVAEGLRGA 123
Query: 156 DIKNPGSVNQDPIFKQYSL----PPNEVGYPGGI-FNPLNF----APTDEAKEKELANGN 206
+ PGS+ + + L YPGG+ FNPL A E ++ E+ +G
Sbjct: 124 EYIAPGSLRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGEKPAAMREMQQAEIRHGR 183
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 87/198 (43%), Gaps = 41/198 (20%)
Query: 40 SSSASFKVEAKGEWLPGLA---SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
SS F + +WL + +P YL G PGD G+D GL+ DPE + Y + EL+++
Sbjct: 23 SSGVEFYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHA 82
Query: 97 RWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSSTL--------FV 140
RWAMLG +G++ PE+ K G+ W+ AG Y + S +
Sbjct: 83 RWAMLGALGIVTPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLA 142
Query: 141 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DE 196
++ IL VE R P DP+ YPG F+PL A E
Sbjct: 143 VQVILLGLVEGYRVN--GGPAGEGLDPL------------YPGESFDPLGLADDPDTFAE 188
Query: 197 AKEKELANGNNSAKLAYF 214
K KE+ NG +LA F
Sbjct: 189 LKVKEIKNG----RLAMF 202
Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG++ FDPLGLA+DP+ E+ N R AM G + + T G I
Sbjct: 170 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSSFGFFVQAIVTGKGPIQ 220
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 35/175 (20%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
P+YL G PGD G+D GL+ DPE + Y + EL+++RWAMLG +G + PE+ +K G +
Sbjct: 53 CPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGV 112
Query: 119 NAPQ--WYDAGKA-------EYFASS------STLFVIEFILFHYVEIRRWQDIKNPGSV 163
+ + W+ AG +Y +S S L ++ + I ++ P
Sbjct: 113 SFGESVWFKAGSQIFQEGGLDYLGNSNLVHAQSILAILGCQVLLMGAIEAYRVNGGPLGE 172
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPG F+PL A E K KE+ NG +LA F
Sbjct: 173 GLDPL------------YPGDKFDPLGLADDPDTFAELKIKEIKNG----RLAMF 211
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
PGD FDPLGLA+DP+ E+ N R AM + G + V T
Sbjct: 179 PGDK-FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAVVT 223
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 94/205 (45%), Gaps = 40/205 (19%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
R+ A K VSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 26 RKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 85
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS----- 136
+ E+++SRWAMLG +G + PE+ ++ G+ W+ AG +Y + S
Sbjct: 86 ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 145
Query: 137 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP 193
++ + +L VE R P DPI YPGG F+PL A
Sbjct: 146 SILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPI------------YPGGSFDPLGLAD 191
Query: 194 TDEA----KEKELANGNNSAKLAYF 214
EA K KEL NG +LA F
Sbjct: 192 DPEAFAELKVKELKNG----RLAMF 212
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 174 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 227
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 85/177 (48%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + EL++SRWAMLG +G + PE+ +K G+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ ++ +L +VE R
Sbjct: 123 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR-------- 173
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
V P+ + ++V YPGG F+PL A E K KEL NG +LA F
Sbjct: 174 -VGGGPLGEGL----DKV-YPGGAFDPLGLADDPDTFAELKVKELKNG----RLAMF 220
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 124
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + IL VE R P
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 182
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A EA K KEL NG +LA F
Sbjct: 183 VTDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 221
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 183 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 125
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 126 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRIAGGP 181
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 182 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 223
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 37 KPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
KPVSS + + + ++L + P+YL G PGD G+D GL+ DPE + E++
Sbjct: 43 KPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 95 NSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR 153
+SRWAMLG +G + PE+ + G+ W+ AG A+ F+ ++ L H I
Sbjct: 103 HSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILA 161
Query: 154 -W-QDIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELAN 204
W + G+V ++ P EV YPGG F+PL A EA K KEL N
Sbjct: 162 IWATQVILMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKN 218
Query: 205 GNNSAKLAYF 214
G +LA F
Sbjct: 219 G----RLAMF 224
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 186 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 81/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 125
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLG 183
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 184 EVVDPL------------YPGGSFDPLGLAEDPEAFAELKVKELKNG----RLAMF 223
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE EL N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 92/200 (46%), Gaps = 40/200 (20%)
Query: 37 KPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
KPVSS + + + ++L + P+YL G PGD G+D GL+ DPE + E++
Sbjct: 43 KPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 95 NSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS--------TL 138
+SRWAMLG +G + PE+ ++ G+ W+ AG +Y + S +
Sbjct: 103 HSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI 162
Query: 139 FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA- 197
+ + +L VE R P DPI YPGG F+PL A EA
Sbjct: 163 WACQVVLMGAVEGYRIAG--GPLGEITDPI------------YPGGSFDPLGLADDPEAF 208
Query: 198 ---KEKELANGNNSAKLAYF 214
K KEL NG +LA F
Sbjct: 209 AELKVKELKNG----RLAMF 224
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 186 ITDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ + +L +VE R P
Sbjct: 125 FGESVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGG--GPL 181
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 182 GEGLDPI------------YPGGAFDPLGLADDPDAFAELKVKELKNG----RLAMF 222
>gi|149242542|pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 73/151 (48%), Gaps = 28/151 (18%)
Query: 87 WYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSST 137
W E++N R+AMLG G + PE+ K G+I A W+ AG Y+A + T
Sbjct: 1 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYT 60
Query: 138 LFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPL 189
LFV+E L + E RR QD NPGS+ KQY L YPGG FNPL
Sbjct: 61 LFVLEMALMGFAEHRRLQDWYNPGSMG-----KQYFLGLEKGLAGSGNPAYPGGPFFNPL 115
Query: 190 NFAPTD----EAKEKELANGNNS--AKLAYF 214
F + E K KE+ NG + A L YF
Sbjct: 116 GFGKDEKSLKELKLKEVKNGRLAMLAILGYF 146
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G +P Y PG F+PLG +D ++LK E+ N R AML ++G + + T
Sbjct: 98 LAGSGNPAY-----PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVT 152
Query: 114 KIG 116
+G
Sbjct: 153 GVG 155
>gi|340744289|dbj|BAK53365.1| chlorophyll a/b-binding protein [Eleusine coracana]
Length = 45
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 38/44 (86%)
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELA 203
PG +QDPIFK YSLPP+E GYPG +FNPLNFAPT EAKEKELA
Sbjct: 1 PGQRHQDPIFKSYSLPPHECGYPGSVFNPLNFAPTLEAKEKELA 44
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 123
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 124 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEG---YRIAGGPL 179
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 180 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 220
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM ++G + + T G
Sbjct: 182 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMLGFFVQAIVTGKG 235
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 93/205 (45%), Gaps = 40/205 (19%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
R+ A K VSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 16 RKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 75
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS----- 136
+ E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S
Sbjct: 76 ELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQ 135
Query: 137 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP 193
++ + IL VE R P DPI YPGG F+PL A
Sbjct: 136 SILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGSFDPLALAD 181
Query: 194 TDEA----KEKELANGNNSAKLAYF 214
EA K KE+ NG +LA F
Sbjct: 182 DPEAFAELKVKEIKNG----RLAMF 202
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 114/235 (48%), Gaps = 33/235 (14%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKL--NREVAL-------KPVSSSASFKVEAKG 51
MA TT S+ P A K+ L+ SS ++ N +V + KPVSS + + +
Sbjct: 1 MAASTTALSS----PFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRV 56
Query: 52 EWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
++L + SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + P
Sbjct: 57 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 116
Query: 110 EVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQD 166
E+ + G+ W+ AG ++ F+ ++ L H I W + G+V
Sbjct: 117 ELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG- 174
Query: 167 PIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
++ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 175 --YRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 223
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 51 GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
GE L + P Y GS FDPLGLAEDPE E+ N R AM + G +
Sbjct: 179 GEPLGEVVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 111 VFTKIG 116
+ T G
Sbjct: 233 LVTGKG 238
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 85/172 (49%), Gaps = 21/172 (12%)
Query: 50 KGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
+ +WL L P+YL G LPGD G+D GL DP L Y +AE++++RWAMLG +G++
Sbjct: 102 RAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVV 161
Query: 108 LPEVFTKIGII--NAPQWYDAGKAEYFASSSTLFVIEFILFH--YVEIRRWQDIKNPGSV 163
PE+ G+ WY AG A+ F++ ++ L H V + + G+V
Sbjct: 162 TPELLAGNGVPFGEGAVWYKAG-AQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAV 220
Query: 164 NQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANG 205
+Y + G YPGG F+PL A +A K KEL NG
Sbjct: 221 EA----YRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNG 268
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 81/172 (47%), Gaps = 26/172 (15%)
Query: 50 KGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
+ +WL L P+YL G LPGD G+D GL DP L Y +AE++++RWAML +
Sbjct: 337 RAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAML-----V 391
Query: 108 LPEVFTKIGII--NAPQWYDAGKAEYFASSSTLFVIEFILFH--YVEIRRWQDIKNPGSV 163
PE+ G+ WY AG A+ F++ ++ L H V + + G+V
Sbjct: 392 TPELLAGNGVPFGEGAVWYKAG-AQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAV 450
Query: 164 NQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANG 205
+Y + G YPGG F+PL A +A K KEL NG
Sbjct: 451 EA----YRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNG 498
Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DP+ L EL N R AM+ ++G + + TK G +
Sbjct: 10 FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 55
Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DP+ L EL N R AM+ ++G + + TK G +
Sbjct: 245 FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 290
Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DP+ L EL N R AM+ ++G + + TK G +
Sbjct: 475 FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 520
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 97/233 (41%), Gaps = 41/233 (17%)
Query: 5 TTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS---PT 61
T A A+ +P + SR + ++ + S S S A G S P+
Sbjct: 11 TVLAGQALLKPVSELSRKVNAGEARVTMRKTVSKSSGSDSIWYGADRPKFLGPFSGETPS 70
Query: 62 YLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INA 120
YLNG GD G+D GL+ DPE + E++++RWAMLG +G L PE+ K G+
Sbjct: 71 YLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGE 130
Query: 121 PQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
W+ AG +Y + S ++ + IL VE R P
Sbjct: 131 AVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA--GGPLGDVT 188
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DPI YPGG F+PL A E K KE+ NG +LA F
Sbjct: 189 DPI------------YPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 225
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L + P Y GS FDPLGLA+DP+ E+ N R AM + G + + T
Sbjct: 184 LGDVTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237
Query: 114 KIG 116
G
Sbjct: 238 GKG 240
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 84/197 (42%), Gaps = 40/197 (20%)
Query: 40 SSSASFKVEAKGEWLP--GLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSR 97
S F + +WL A+P YL G GD G+D GL+ DPE + Y + EL+++R
Sbjct: 34 SKGTEFYGPNRAKWLGPFSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHAR 93
Query: 98 WAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSSTL--------FVI 141
WAMLG +G + PE+ K G+ W+ AG Y +SS +
Sbjct: 94 WAMLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLAC 153
Query: 142 EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEA 197
+ IL VE R P DP+ YPG F+PL A E
Sbjct: 154 QVILMGLVEGYRVNG--GPAGEGLDPL------------YPGEAFDPLGLADDPDTFAEL 199
Query: 198 KEKELANGNNSAKLAYF 214
K KE+ NG +LA F
Sbjct: 200 KVKEIKNG----RLAMF 212
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG+ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 180 PGE-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPI 229
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 35/188 (18%)
Query: 54 LPG-LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
LPG L S +L G++ GD GFDPLGL+++ + Y +AEL+++RWAMLGVVG L+PE+
Sbjct: 185 LPGPLGSAEHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGCLVPELL 244
Query: 113 TKIGI-INAPQWYDAGKAEY---------------FASSSTLFVI---EFILFHYVEIRR 153
G+ + P W+ G ++ A + +I + +L E R
Sbjct: 245 ALRGVDLGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYAR 304
Query: 154 WQDIKNPGSVNQDPIFKQYSLPPNEVGYP-GGIFNPLNFAPTD----EAKEKELANGNNS 208
+ I++ V +F P + YP GG F+PLN+A E KE+ NG +
Sbjct: 305 YVGIRSLEPVG---VFL-----PGDQNYPGGGPFDPLNYAADADGFVEQAVKEVKNGRLA 356
Query: 209 --AKLAYF 214
A L +F
Sbjct: 357 MLAMLGFF 364
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 79/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 119 NAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y S ++ ++ +L +VE R P
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--GPLGE 183
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 184 GLDPI------------YPGGAFDPLGLADDPDAFAELKVKELKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 30/169 (17%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 91 PEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 150
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN-QDPIF 169
P+ W+ D G YF + +I ++ V + + + +N +D +
Sbjct: 151 GPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKL- 209
Query: 170 KQYSLPPNEVGYPGGIFNPLNFA-PTDEA---KEKELANGNNSAKLAYF 214
+PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 210 -----------HPGGPFDPLGLANDPDQAALLKVKEIKNG----RLAMF 243
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 111/232 (47%), Gaps = 26/232 (11%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWL 54
MAT T S++ F A K S +TG+ R+ A K P SS + + + ++L
Sbjct: 1 MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIF 169
+ G+ W+ AG ++ F+ ++ L H I W + G+V +
Sbjct: 121 ARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---Y 176
Query: 170 KQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 RIAGGPLGEVVDPLYPGGSFDPLGPADDPEAFAELKVKEIKNG----RLAMF 224
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 105/243 (43%), Gaps = 49/243 (20%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALKPVSSSAS-----FKVEAKG 51
MA T S+ F A K S L GS R+ KP +SS S +V+ G
Sbjct: 1 MAASTMALSSPSFAGMAVKVAPSSSELFGSGRISMRKTGKKPAASSGSPWYGPDRVKYLG 60
Query: 52 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEV 111
+ +P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+
Sbjct: 61 PF--SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 118
Query: 112 FTKIGI-INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQ 155
+ G+ W+ AG +Y + S ++ + IL VE R
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 178
Query: 156 DIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKL 211
P DP+ YPGG F+PL A EA K KEL NG +L
Sbjct: 179 G--GPLGEVVDPL------------YPGGSFDPLGLAEDPEAFAELKVKELKNG----RL 220
Query: 212 AYF 214
A F
Sbjct: 221 AMF 223
Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE EL N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|87313237|gb|ABD37915.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas incerta]
Length = 259
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 83/213 (38%), Gaps = 59/213 (27%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPE---------------------- 83
K + WLP A P +L+GSLPGD GFDPLGL++ E
Sbjct: 52 KYQGDALWLPNTARPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNVGKNNKGTVE 111
Query: 84 -----------------------NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
L + + EL++ RWAML +G L+ E T +
Sbjct: 112 AIVQASPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGV----- 166
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
W +AGK E +S + F + + W ++ G ++ P +
Sbjct: 167 -SWVEAGKVELDGASYAGLSLPFSITQLI----WIEVILVGGAE---FYRNTETDPEKRC 218
Query: 181 YPGGIFNPLNFAPTDEAKEKELANGN-NSAKLA 212
YPGG+F+PL A DE + L A+LA
Sbjct: 219 YPGGVFDPLKLASEDEERAFRLKTAEIKHARLA 251
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 36/176 (20%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL++ P++ + Y EL+++RWAMLG G ++PE F K G
Sbjct: 92 PEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 120 APQ--WY-------DAGKAEYFASSSTL-----FVIEFILFHYVEIRRWQDIKNPGSVNQ 165
P+ W+ D YF + + V E IL E R +
Sbjct: 152 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVILVGGAEYFRITN--------- 202
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNS--AKLAYFY 215
L ++ +PGG F+PL A D+A K KE+ NG + A L +F+
Sbjct: 203 -------GLGFDDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFF 251
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ + +L +VE R P
Sbjct: 125 FGESVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGG--GPL 181
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 182 GEGLDPI------------YPGGAFDPLGLADDPDAFAELKVKELKNG----RLATF 222
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 80/176 (45%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVK 124
Query: 118 INAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y S ++ + +L +VE R P
Sbjct: 125 FGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 183 EGLDPI------------YPGGAFDPLGLADDPDAFAELKVKELKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 50 KGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
+ +WL L P+YL G LPGD G+D GL DP L Y +AE++++RWAMLG +G++
Sbjct: 50 RAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVV 109
Query: 108 LPEVFTKIGI--INAPQWYDAGKAEYFASSSTLFVIEFILFHY--VEIRRWQDIKNPGSV 163
PE+ G+ WY AG A+ F++ ++ L H V + + G+V
Sbjct: 110 TPELLAGNGVPFGEGAVWYKAG-AQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAV 168
Query: 164 NQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGN 206
+Y + G YPGG F+PL A +A K KEL NG
Sbjct: 169 EA----YRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGR 217
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 50 KGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
+ +WL L P+YL G LPGD G+D GL DP L Y +AE++++RWAMLG +G++
Sbjct: 285 RAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVV 344
Query: 108 LPEVFTKIGI--INAPQWYDAG 127
PE+ G+ WY AG
Sbjct: 345 TPELLAGNGVPFGEGAVWYKAG 366
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DP+ L EL N R AM+ ++G + + TK G +
Sbjct: 193 FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPV 238
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 114/235 (48%), Gaps = 33/235 (14%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKL--NREVAL-------KPVSSSASFKVEAKG 51
MA TT S+ P A K+ L+ SS ++ N +V + KPVSS + + +
Sbjct: 1 MAASTTALSS----PFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRV 56
Query: 52 EWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
++L + SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + P
Sbjct: 57 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 116
Query: 110 EVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQD 166
E+ + G+ W+ AG ++ F+ ++ L H I W + G+V
Sbjct: 117 ELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG- 174
Query: 167 PIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
++ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 175 --YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 223
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 79/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 119 NAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y S ++ ++ +L +VE R P
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--GPLGE 183
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 184 GLDPI------------YPGGAFDPLGLADDPDAFAELKVKELKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 81/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 63 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 122
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 123 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLG 180
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A EA K KEL NG +LA F
Sbjct: 181 EITDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 220
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 182 ITDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 36/175 (20%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ K GI
Sbjct: 29 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIP 88
Query: 118 INAPQWYDAGKAEYFASSSTLF-----------VIEFILFHYVEIRRWQDIK-NPGSVNQ 165
W+ AG ++ FA + +I + F V + + + N G + +
Sbjct: 89 FGEAVWFKAG-SQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGE 147
Query: 166 --DPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ +PGG F+PL A E K KE+ NG +LA F
Sbjct: 148 GLDPL------------HPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 186
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 158 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQ 204
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 124
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEG---YRIAGGPL 180
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 181 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 221
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 183 VTDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 117 II 118
I
Sbjct: 237 PI 238
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W V + + Y +
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPNLVHAQSILAIWAS-----QVVLMGLIEGYRIGG 178
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KEL NG +LA F
Sbjct: 179 GPLGEGLDSLYPGGAFDPLGLADDPEAFAELKVKELKNG----RLAMF 222
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
L+ PG FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 185 LDSLYPG-GAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 86/197 (43%), Gaps = 40/197 (20%)
Query: 40 SSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSR 97
SS S+ + +WL ++ P YL G GD G+D GL+ DPE + Y + EL+++R
Sbjct: 35 SSGTSWYGPERAKWLGPFSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHAR 94
Query: 98 WAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSSTL--------FVI 141
WAMLG +G + PE+ K G+ W+ AG Y +SS +
Sbjct: 95 WAMLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLAC 154
Query: 142 EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEA 197
+ IL VE R P DP+ YPG F+PL A E
Sbjct: 155 QVILMGLVEGYRVNG--GPAGEGLDPL------------YPGEAFDPLGLADDPDTFAEL 200
Query: 198 KEKELANGNNSAKLAYF 214
K KE+ NG +LA F
Sbjct: 201 KVKEIKNG----RLAMF 213
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG+ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 181 PGE-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPI 230
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPEN + E+++ RWAMLG +G + PE+ + G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 134
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 135 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 190
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 191 GEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 231
Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 193 VTDPIYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 246
Query: 117 II 118
I
Sbjct: 247 PI 248
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 37/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ +K +
Sbjct: 50 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGV 109
Query: 119 NAPQ--WYDAGKAEYFASSSTLF-----------VIEFILFHYVEIRRWQDIK-NPGSVN 164
+ + W+ AG A+ FA + +I + F V + + + N G +
Sbjct: 110 SFGEAVWFKAG-AQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLG 168
Query: 165 Q--DPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ DP+ +PGG F+PL A E K KE+ NG +LA F
Sbjct: 169 EGLDPL------------HPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 208
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 180 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 225
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 37/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ +K +
Sbjct: 50 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGV 109
Query: 119 NAPQ--WYDAGKAEYFASSSTLF-----------VIEFILFHYVEIRRWQDIK-NPGSVN 164
+ + W+ AG A+ FA + +I + F V + + + N G +
Sbjct: 110 SFGEAVWFKAG-AQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLG 168
Query: 165 Q--DPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ DP+ +PGG F+PL A E K KE+ NG +LA F
Sbjct: 169 EGLDPL------------HPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 208
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 180 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 225
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 21/168 (12%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 91
Query: 118 INAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 92 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 151
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 152 AEDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 190
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DPE EL N R AM + G + + T G I
Sbjct: 162 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 207
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 32/171 (18%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII- 118
P +L G PGD GFD LGL+ DP + Y E++++RWAML +G+++PE+ + G +
Sbjct: 143 PDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVVIPELLDRFGGVQ 202
Query: 119 -NAPQWYDAGKAE--------------YFASSSTLFVIEF---ILFHYVEIRRWQDIKNP 160
+ P W+ G A+ + A + + VI F IL E R+ I+
Sbjct: 203 FSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIAFCQVILMLGPEYARYCGIE-- 260
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNF----APTDEAKEKELANGN 206
++ IF P +V YPGG +F+PL A ++ K KE+ NG
Sbjct: 261 -ALEPLGIFL-----PGDVNYPGGALFDPLGLTKDAAAFEDLKVKEMKNGR 305
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 121
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 122 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWATQVLLMGAVEG---YRIAGGPL 177
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 178 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 218
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 180 VTDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 233
Query: 117 II 118
I
Sbjct: 234 PI 235
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 83/176 (47%), Gaps = 39/176 (22%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ +K G ++
Sbjct: 46 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYGGVS 105
Query: 120 ---------APQWYDAGKAEYFASSSTLFV--------IEFILFHYVEIRRWQDIKNPGS 162
Q + G +Y +S+ + + +L +E R
Sbjct: 106 FGESVWFKAGSQIFQEGGLDYLGNSNLIHAQSILAILGCQVVLMGLIEAYR--------- 156
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
VN P+ + L P +PG F+PL A E K KE+ NG +LA F
Sbjct: 157 VNGGPLGE--GLDPL---HPGDKFDPLGLADDPDTFAELKVKEIKNG----RLAMF 203
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PGD FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 171 PGDK-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPI 220
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 20/222 (9%)
Query: 5 TTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA--SPTY 62
TT A ++FR S+ + + R+ K S + + + +WL + +P+Y
Sbjct: 10 TTLAGQSLFRFNELSSKVGSSQARVSMRKTVSKSSGSDSIWYGADRPKWLGPFSGETPSY 69
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAP 121
LNG GD G+D GL+ DPE + E++++RWAMLG +G L PE+ K G+
Sbjct: 70 LNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEA 129
Query: 122 QWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEV 179
W+ AG A+ F+ ++ L H I W + G+V ++ P +V
Sbjct: 130 VWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEG---YRVAGGPLGDV 185
Query: 180 G---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
YPGG F+PL A E K KE+ NG +LA F
Sbjct: 186 TDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 223
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L + P Y GS FDPLGLA+DP+ E+ N R AM + G + + T
Sbjct: 182 LGDVTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 235
Query: 114 KIG 116
G
Sbjct: 236 GKG 238
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 37 KPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
KPVSS + + + +L L+ P+YL G PGD G+D GL+ DPE + EL+
Sbjct: 9 KPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELI 68
Query: 95 NSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR 153
+SRWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I
Sbjct: 69 HSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILA 127
Query: 154 -WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELAN 204
W + G+V ++ P E+ YPGG F+PL A EA K KEL N
Sbjct: 128 IWACQVVLMGAVEG---YRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKELKN 184
Query: 205 GNNSAKLAYF 214
G +LA F
Sbjct: 185 G----RLAMF 190
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 152 IVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 205
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 81/174 (46%), Gaps = 36/174 (20%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + EL+++RWAMLG +G + PE+ K G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGVKF 126
Query: 119 NAPQWYDAGKAEYFA--------------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVN 164
W+ AG ++ FA + S L + F + + ++ P
Sbjct: 127 GEAVWFKAG-SQIFAEGGLDYLGNPSLVHAQSILAIWAFQVVLMGAVEGYRVAGGPLGEV 185
Query: 165 QDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 186 EDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 223
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
P Y GS FDPLGLA+DPE EL N R AM + G + + T G I
Sbjct: 188 PLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 81/190 (42%), Gaps = 37/190 (19%)
Query: 40 SSSASFKVEAKGEWLPGL---ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
SS F + +WL A+P YL G PGD G+D GL+ DPE K Y + EL+++
Sbjct: 31 SSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 90
Query: 97 RWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSSTLF--------V 140
RWAMLG +G PE+ K G W+ AG +Y + S +
Sbjct: 91 RWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSA 150
Query: 141 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DE 196
++ IL +E R P DP+ YPG F+PL A E
Sbjct: 151 VQVILMGLIEGYRVNG--GPAGEGLDPL------------YPGESFDPLGLADDPDTFAE 196
Query: 197 AKEKELANGN 206
K KE+ NG
Sbjct: 197 LKVKEIKNGR 206
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 81/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 69 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 128
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 129 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLG 186
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 187 EVVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 226
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 188 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 241
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 79/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 122
Query: 119 NAPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + IL VE R P
Sbjct: 123 GEAVWFKAGSLIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 180
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A EA K KEL NG +LA F
Sbjct: 181 VTDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 219
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 181 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 234
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 37/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ +K +
Sbjct: 50 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGV 109
Query: 119 NAPQ--WYDAGKAEYFASSSTLF-----------VIEFILFHYVEIRRWQDIK-NPGSVN 164
+ + W+ AG A+ FA + +I + F V + + + N G +
Sbjct: 110 SFGEAVWFKAG-AQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLG 168
Query: 165 Q--DPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ DP+ +PGG F+PL A E K KE+ NG +LA F
Sbjct: 169 EGLDPL------------HPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 208
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 180 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 225
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 100/231 (43%), Gaps = 57/231 (24%)
Query: 4 VTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYL 63
+T + SAA +P AS G+ +R + L P+S G P+YL
Sbjct: 27 ITMRKSAAKPKPAASSGSPWYGA----DRVLYLGPLS---------------GREPPSYL 67
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQ 122
G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 68 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPELLARNGVKFGEAV 127
Query: 123 WYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 167
W+ AG +Y + S ++ ++ +L VE R P DP
Sbjct: 128 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGEVVDP 185
Query: 168 IFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 186 L------------YPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 220
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 192 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 37/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ +K +
Sbjct: 51 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGV 110
Query: 119 NAPQ--WYDAGKAEYFASSSTLF-----------VIEFILFHYVEIRRWQDIK-NPGSVN 164
+ + W+ AG A+ FA + +I + F V + + + N G +
Sbjct: 111 SFGEAVWFKAG-AQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLG 169
Query: 165 Q--DPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ DP+ +PGG F+PL A E K KE+ NG +LA F
Sbjct: 170 EGLDPL------------HPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 209
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 181 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 226
>gi|116792229|gb|ABK26282.1| unknown [Picea sitchensis]
Length = 288
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 87/214 (40%), Gaps = 77/214 (35%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYV----------------------- 89
WLPG +P +L+GSL GD GFDPLGL + E L++ V
Sbjct: 69 WLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDP 128
Query: 90 -------------------QAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAE 130
+ EL++ RWAMLGV+G L E FT I W DAGK E
Sbjct: 129 DIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVEGFTGI------YWQDAGKVE 182
Query: 131 ------YFASS-----STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEV 179
YF S STL +IE +L Y+E +R ++ P
Sbjct: 183 LVEGSSYFGFSLPFNMSTLILIEVLLLGYIEFQRNAEVD-----------------PETR 225
Query: 180 GYPGG-IFNPLNFAPTDEAKEKELANGNNSAKLA 212
YPGG F+P A + K++ A+LA
Sbjct: 226 LYPGGKYFDPFGLAVEEIKKDRLKLAEIKHARLA 259
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 73/169 (43%), Gaps = 22/169 (13%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P YLNG L GD G+DPLGL +DPE + Y + EL+++RWAML G+L+PE G I
Sbjct: 72 PEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGLQANGANI 131
Query: 119 NAPQWYD-------AGKAEYFASS----------STLFVIEFILFHYVEIRRWQDIKNPG 161
W++ G YFA + +E L VE R G
Sbjct: 132 KGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAVEVGLMGAVEFYRRNGTGPAG 191
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
F + YPGG F+PL A E K KE+ NG
Sbjct: 192 YSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQELKVKEIKNGR 240
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DPE L+ E+ N R AM+ V+G + T G
Sbjct: 216 FDPLGLADDPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEG 259
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 37/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ +K ++
Sbjct: 50 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 109
Query: 120 APQ--WYDAGKAEYFASSSTLF-----------VIEFILFHYVEIRRWQDIK-NPGSVNQ 165
+ W+ AG A+ FA + +I + F V + + + N G + +
Sbjct: 110 FGEAVWFKAG-AQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGE 168
Query: 166 --DPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ +PGG F+PL A E K KE+ NG +LA F
Sbjct: 169 GLDPL------------HPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 207
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 179 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 224
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 22/228 (9%)
Query: 1 MATVTTQASAAVFRPCASKS-RFLTGSSGKLNREVALKPVSSSASFKVEA-KGEWLPGLA 58
MA T S A+ A KS L+ G + V ++ SSS S A + ++L L+
Sbjct: 1 MAACTATHSTALAGQTALKSINELSRKVGNVQARVTMRKASSSDSIWYGADRPKYLGPLS 60
Query: 59 --SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+P+YL G GD G+D GL+ DPE + E++++RWAMLG +G + PE+ K G
Sbjct: 61 GETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 120
Query: 117 I-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYS 173
+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 VKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEG---YRVAG 176
Query: 174 LPPNEVG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
P EV YPGG F+PL A E K KE+ NG +LA F
Sbjct: 177 GPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 220
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 182 VTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 1 MATVTTQASAAV-FRPCASKSRFLTGSSGKLNREVA--LKPVSSSASFKVEAKGEWLPGL 57
MA ++ A AV P +S+ +TG+ R+ A KPVSS + + + ++L
Sbjct: 6 MALSSSFAGKAVKLSPSSSE---ITGNGKVTMRKTASKAKPVSSGSLWYGPDRVKYLGPF 62
Query: 58 A--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
+ SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +
Sbjct: 63 SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 122
Query: 116 GI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQY 172
G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 123 GVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRVA 178
Query: 173 SLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 GGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 223
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 123
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + IL VE R P
Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 181
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A EA K KEL NG +LA F
Sbjct: 182 VTDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 220
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 182 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 24/230 (10%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG 56
MAT T S+ F A K + L G+ R+ A K VSS + + + ++L
Sbjct: 1 MATSTMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKSVSSGSPWYGPDRVKYLGP 60
Query: 57 LAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 115 IGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQ 171
G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 NGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRV 176
Query: 172 YSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 AGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 184 VTDPIYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 29/171 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P+YL G PGD G+D +GL+ DPE Y + EL+++RWAMLG +G LPE K IN
Sbjct: 61 PSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCFLPEALEKYSGIN 120
Query: 120 ---------APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
Q + G +Y + S + I +++ ++ ++
Sbjct: 121 FGESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQALLMGLVEG---------YR 171
Query: 171 QYSLPPNEVG---YPGGIFNPLNFA----PTDEAKEKELANGNNSAKLAYF 214
P E G YPGG F+PL E K KE+ NG +LA F
Sbjct: 172 VGGGPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNG----RLAMF 218
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 39/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P+YL G PGD G+D GL+ DPE + Y + EL+++RWAMLG +G + PE+ +K G +
Sbjct: 53 TPSYLTGEFPGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCVTPEILSKYGGV 112
Query: 119 NAPQ--WYDAGK-------------AEYFASSSTLFVI--EFILFHYVEIRRWQDIKNPG 161
+ + W+ AG A + S L ++ + +L +E R
Sbjct: 113 SFGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYR-------- 164
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
VN P+ + L P YPG F+PL A E K KE+ NG +LA F
Sbjct: 165 -VNGGPLGE--GLDPL---YPGDKFDPLGLADDPDTFAELKIKEIKNG----RLAMF 211
Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PGD FDPLGLA+DP+ E+ N R AM + G + V T G I
Sbjct: 179 PGDK-FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFFVQAVVTGKGPI 228
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 29/171 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P+YL G PGD G+D +GL+ DPE Y + EL+++RWAMLG +G LPE K IN
Sbjct: 61 PSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCFLPEALEKYSGIN 120
Query: 120 ---------APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
Q + G +Y + S + I +++ ++ ++
Sbjct: 121 FGESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQALLMGLVEG---------YR 171
Query: 171 QYSLPPNEVG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
P E G YPGG F+PL E K KE+ NG +LA F
Sbjct: 172 VGGGPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNG----RLAMF 218
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKF 131
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 132 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 187
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KEL NG +LA F
Sbjct: 188 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNG----RLAMF 228
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ EL N R AM + G + + T G
Sbjct: 190 VTDPIYPGGS------FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 117 IIN 119
I
Sbjct: 244 PIE 246
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 80/176 (45%), Gaps = 42/176 (23%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
SP+YLNG PGD G+D GL+ DPE Y + E++++RWAMLG +G+++PE+ +
Sbjct: 81 SPSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHARWAMLGALGIVVPELLDQ---T 137
Query: 119 NAPQWYDAGKAEYFASSSTLFV----------------IEFILFHYVEIRRWQDIKNPGS 162
N W+DAG A F ++ ++ IL +E R P
Sbjct: 138 NHVAWFDAG-ATIFGPKGIQYLGVPGLINAKNIIATVAVQVILMGAIEGYRVNG--GPAG 194
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
D + YPG F+PL A E K KE+ NG +LA F
Sbjct: 195 EGLDKV------------YPGESFDPLGLADDPDTFAELKVKEIKNG----RLAMF 234
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 7 QASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGS 66
A A +F P K G G +N + + V+ +G + G + L+
Sbjct: 144 DAGATIFGP---KGIQYLGVPGLINAKNIIATVAVQVILMGAIEGYRVNGGPAGEGLDKV 200
Query: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG++ FDPLGLA+DP+ E+ N R AM G + + T G I
Sbjct: 201 YPGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSNFGFFVQAIVTGKGPI 251
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 80/176 (45%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVK 124
Query: 118 INAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y S ++ + +L +VE R P
Sbjct: 125 FGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 183 EGLDPI------------YPGGAFDPLGLADDPDAFAELKVKELKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIITGKGPI 239
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 82/168 (48%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQ 123
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + + Y +
Sbjct: 124 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAT-----QVVLMGLIEGYRVGG 177
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 178 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 193 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 93/205 (45%), Gaps = 40/205 (19%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
R+ K VSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 34 RKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 93
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS----- 136
+ E+++SRWAMLG +G + PE+ ++ G+ W+ AG +Y + S
Sbjct: 94 ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 153
Query: 137 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP 193
++ + IL VE R P DPI YPGG F+PL A
Sbjct: 154 SILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGSFDPLGLAD 199
Query: 194 TDEA----KEKELANGNNSAKLAYF 214
EA K KEL NG +LA F
Sbjct: 200 DPEAFAELKVKELKNG----RLAMF 220
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 182 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 91
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 92 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRIAGGP 147
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 148 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 189
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 151 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 204
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 92 PAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D YF + + +I ++ V + G I
Sbjct: 152 GPEAVWFKTGALLLDGNTLNYFGKNIPINLIFAVVAEVVLV---------GGAEYYRIIN 202
Query: 171 QYSLPPNEVGYPGGIFNPLNFA-PTDEA---KEKELANGNNS--AKLAYF 214
L + +PGG F+PL A D+A K KE+ NG + A L +F
Sbjct: 203 GLDL--EDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFF 250
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 126 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEA 185
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 186 EDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 223
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 127 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEG---YRIAGGPL 182
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 183 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 81/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 65 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 124
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ ++ IL VE R P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 183 EVVDPL------------YPGGSFDPLGLAEDPEAFAELKVKELKNG----RLAMF 222
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE EL N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 93/205 (45%), Gaps = 40/205 (19%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
R+ K VSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 34 RKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 93
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS----- 136
+ E+++SRWAMLG +G + PE+ ++ G+ W+ AG +Y + S
Sbjct: 94 ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 153
Query: 137 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP 193
++ + IL VE R P DPI YPGG F+PL A
Sbjct: 154 SILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGSFDPLGLAD 199
Query: 194 TDEA----KEKELANGNNSAKLAYF 214
EA K KEL NG +LA F
Sbjct: 200 DPEAFAELKVKELKNG----RLAMF 220
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 182 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVEF 125
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 126 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEA 185
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 186 EDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 223
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 126
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 127 GEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEG---YRIAGGPL 182
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 183 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 223
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 185 VTDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 124
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 125 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEA 184
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 185 EDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 222
>gi|384246706|gb|EIE20195.1| chlorophyll a/b-binding protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 203
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 23/155 (14%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG +P+YL+GSLPGD GFDP+ LA +P L W V+ EL N R AML V G+LL E
Sbjct: 1 WYPGAEAPSYLDGSLPGDRGFDPMRLAANPSTLPWLVEGELYNGRVAMLAVAGILLVEA- 59
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
+G P W + ++ V+ ++ E++R+ + F++Y
Sbjct: 60 AGLG----PWWSAPFRVDWPLPYWPGVVVFHAIYAAFEVKRFDN------------FQKY 103
Query: 173 SLPPNEVGYPGGI-FNPLNFAPTDEAKEKELANGN 206
E G G + F+PLN D ++ E+ NG
Sbjct: 104 G----ETGLLGFVPFDPLNMR-DDYKRQSEVRNGR 133
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 71 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 130
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 131 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEG---YRIAGGPL 186
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KEL NG +LA F
Sbjct: 187 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNG----RLAMF 227
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ EL N R AM + G + + T G
Sbjct: 189 VTDPIYPGGS------FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 242
Query: 117 IIN 119
I
Sbjct: 243 PIE 245
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 81/170 (47%), Gaps = 23/170 (13%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A+P Y PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ K G
Sbjct: 56 ATPAYRLAKFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGT 115
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG--SVNQDPIFKQYSL 174
W+ AG A+ F+ ++ L H IRR +PG V + + Y +
Sbjct: 116 QFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQNIRR-----HPGRFKVILMGLVEGYRV 169
Query: 175 PPNEVG------YPGGIFNPLNFAPTD----EAKEKELANGNNSAKLAYF 214
G YPG F+PL A E K KE+ NG +LA F
Sbjct: 170 NGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNG----RLAMF 215
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG++ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 183 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQ 233
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ ++ +L +VE R
Sbjct: 123 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR-------- 173
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
V P+ + ++V YPGG F+PL A E K KEL NG +LA F
Sbjct: 174 -VGGGPLGEGL----DKV-YPGGAFDPLGLADDPDTFAELKVKELKNG----RLAMF 220
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 183 LDKVYPG-GAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ G+
Sbjct: 58 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPF 117
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + S + + ++ I+ VN P+ +
Sbjct: 118 GESVWFKAGAQIFQEGGLDYLGNPSLVHAQSILAILGTQVILMGAIEGY-RVNGGPLGEG 176
Query: 172 YSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ YPGG F+PL A E K KE+ NG +LA F
Sbjct: 177 L-----DKLYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 214
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G++ ++ P
Sbjct: 127 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEG---YRVAGGP 182
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 183 LGEVTDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 224
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 186 VTDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 26/231 (11%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLN--REVALKPVSSS--ASFKVEAKGEWLPG 56
MAT Q SA V + A L G R + V S+ + + E + ++L
Sbjct: 1 MATSAIQQSAFVGQTVAKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGP 60
Query: 57 LA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
+ +P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120
Query: 115 IGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYS 173
G+ W+ AG A+ F+ ++ L H I + V + + Y
Sbjct: 121 NGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWACQ----VVLMGLIEGYR 175
Query: 174 LPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ +G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 176 VGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ K G+
Sbjct: 66 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGVK 125
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + + Y +
Sbjct: 126 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWAS-----QVVLMGLIEGYRVGG 179
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 180 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 195 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 102/221 (46%), Gaps = 50/221 (22%)
Query: 28 GKLNREVALK---PVSSSASFKV-------------EAKGEWLPGL--ASPTYLNGSLPG 69
G L R++ K V++S+ FK E + WL L P YL G LPG
Sbjct: 80 GSLQRQLEKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPG 139
Query: 70 DNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN--APQWYDAG 127
D GFD GL+EDP + + E++++RWAML +G L+PE+ G + P W+ G
Sbjct: 140 DYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVG 199
Query: 128 KAE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
++ + A S + VI + IL E R+ I+ ++ I+
Sbjct: 200 YSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIE---ALEPLGIYL 256
Query: 171 QYSLPPNEVGYPGGI-FNPLNFAPTDEA----KEKELANGN 206
P ++ YPGG+ F+PLN + EA K KE+ NG
Sbjct: 257 -----PGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGR 292
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 28 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 87
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 88 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRIAGGP 143
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 144 LGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNG----RLAMF 185
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAE PE EL N R AM + G +P + T G
Sbjct: 147 VVDPLYPGGS------FDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKG 200
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K GI
Sbjct: 19 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGIK 78
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ + +L ++E R
Sbjct: 79 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFIEGYR-------- 129
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA----PTDEAKEKELANGNNSAKLAYF 214
V P+ + ++ YPGG F+PL A E K KEL NG +LA F
Sbjct: 130 -VGGGPLGEGL-----DIIYPGGAFDPLGLADDPDTAAELKVKELKNG----RLAMF 176
Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DP+ EL N R AM + G + + T G
Sbjct: 148 FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 191
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 126 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEA 185
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 186 EDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 223
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNPELEVIHSRWAMLGALGCVFPELLSRNGVKF 123
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + IL VE R P
Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 181
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A EA K KEL NG +LA F
Sbjct: 182 VTDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 220
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 182 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 24/230 (10%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG 56
MAT T S+ F A K + L G+ R+ A K VSS + + + ++L
Sbjct: 1 MATSTMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKNVSSGSPWYGPDRVKYLGP 60
Query: 57 LAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 115 IGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQ 171
G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 NGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEG---YRV 176
Query: 172 YSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 AGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 184 VTDPIYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 81/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 70 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 129
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 130 FGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLG 187
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 188 EITDPI------------YPGGSFDPLGLADDPDAFAELKVKELKNG----RLAMF 227
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ EL N R AM + G + + T G
Sbjct: 189 ITDPIYPGGS------FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 242
Query: 117 II 118
I
Sbjct: 243 PI 244
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 39/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF-TKIGI 117
+P YL G PGD G+D GL+ DPE K Y + E++++RWA+LG +G+L PE+ T G+
Sbjct: 55 TPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGV 114
Query: 118 -INAPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPG 161
P W+ AG +Y S + + ++ +L +E R P
Sbjct: 115 KFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNG--GPA 172
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPG F+PL A E K KE+ NG +LA F
Sbjct: 173 GEGLDPL------------YPGESFDPLGLADDPDTFAELKVKEIKNG----RLAMF 213
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN--APQWYD 125
PG++ FDPLGLA+DP+ E+ N R AM G + + T G I A D
Sbjct: 181 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLAD 239
Query: 126 AGKAEYFASSS 136
G FA+++
Sbjct: 240 PGTNNAFAAAT 250
>gi|424513524|emb|CCO66146.1| light-harvesting protein of photosystem I [Bathycoccus prasinos]
Length = 212
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W PG +P YL+GS+ GD GFDPL L + E+L + +AEL+N RWAM +G+L +
Sbjct: 2 WYPGATAPDYLDGSMAGDYGFDPLRLGANKESLPYLQEAELMNGRWAMYATIGVLATDSN 61
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG 161
+ P++++AG A+Y TL V + I+ +E R + G
Sbjct: 62 PSL-----PKFWEAGAADYDIDFKTLVVTQVIVMGILEALRIRGFMKTG 105
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G++ ++ P
Sbjct: 127 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIEG---YRVAGGP 182
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 183 LGEVTDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 224
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 186 VTDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 102/221 (46%), Gaps = 50/221 (22%)
Query: 28 GKLNREVALK---PVSSSASFKV-------------EAKGEWLPGL--ASPTYLNGSLPG 69
G L R++ K V++S+ FK E + WL L P YL G LPG
Sbjct: 80 GSLQRQLEKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPG 139
Query: 70 DNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN--APQWYDAG 127
D GFD GL+EDP + + E++++RWAML +G L+PE+ G + P W+ G
Sbjct: 140 DYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVG 199
Query: 128 KAE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
++ + A S + VI + IL E R+ I+ ++ I+
Sbjct: 200 YSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIE---ALEPLGIYL 256
Query: 171 QYSLPPNEVGYPGGI-FNPLNF----APTDEAKEKELANGN 206
P ++ YPGG+ F+PLN A +E K KE+ NG
Sbjct: 257 -----PGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGR 292
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 32/170 (18%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL + PE+ Y EL+++RWAMLG G ++PE K G
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 168
P+ W+ D YF +S + ++ ++ V + + I N G +D +
Sbjct: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVVLVGGAEYYRITN-GLDLEDKL 203
Query: 169 FKQYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
+PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 204 ------------HPGGPFDPLGLASDPDQAAILKVKEIKNG----RLAMF 237
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 26/232 (11%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNRE---VALKPVSSSASFKVEAKGEWL 54
MA T S+ F A K S + +GK+ + KPVSS + + + ++L
Sbjct: 1 MAAATMSLSSPSFAGKAVKLSPSSYEIIGNGKVTMRKTVIKAKPVSSGSPWYGPDRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 GPFSGNSPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIF 169
+ G+ W+ AG ++ F+ ++ L H I W + G+V +
Sbjct: 121 ARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---Y 176
Query: 170 KQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 RVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 85/177 (48%), Gaps = 39/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
P+YL G PGD G+D GL+ DPE + Y + EL+++RWAMLG +G + PE+ +K G +
Sbjct: 53 CPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGV 112
Query: 119 NAPQ--WYDAGK-------------AEYFASSSTLFVI--EFILFHYVEIRRWQDIKNPG 161
+ + W+ AG A + S L ++ + +L +E R
Sbjct: 113 SFGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYR-------- 164
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
VN P+ + L P YPG F+PL A E K KE+ NG +LA F
Sbjct: 165 -VNGGPLGE--GLDPL---YPGDKFDPLGLADDPDTFAELKIKEIKNG----RLAMF 211
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PGD FDPLGLA+DP+ E+ N R AM + G + V T G I
Sbjct: 179 PGDK-FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTGKGPI 228
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 121
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 122 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEA 181
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 182 EDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 219
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DPE EL N R AM + G + + T G I
Sbjct: 191 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 236
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 121
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 122 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEA 181
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 182 EDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 219
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DPE EL N R AM + G + + T G I
Sbjct: 191 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 236
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 54 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 113
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 114 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRIAGGP 169
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 170 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 211
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 173 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 226
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 35/170 (20%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A+P+YL G PGD G+D GL+ DPE Y + E++++RWAMLG +G + PE+ K G
Sbjct: 43 ATPSYLKGEYPGDYGWDTAGLSADPETFSRYRELEVIHARWAMLGALGCVTPELLQKNGA 102
Query: 118 IN---------APQWYDAGKAEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNP 160
N Q + G +Y +++ + + + +L +E R P
Sbjct: 103 ANFGEAVWFKAGAQIFQDGGLDYLGNANLVHAQSIVAVLLTQIVLMGLIEGYRVN--GGP 160
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
DPI YPG F+PL A E K KE+ NG
Sbjct: 161 AGEITDPI------------YPGEAFDPLGLADDPDTLAELKVKEIKNGR 198
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG+ FDPLGLA+DP+ L E+ N R AM+ + G + + T G I
Sbjct: 170 PGE-AFDPLGLADDPDTLAELKVKEIKNGRLAMVSMFGFFIQAIVTGKGPI 219
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 79/176 (44%), Gaps = 40/176 (22%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKF 131
Query: 119 NAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG A+ F+ ++ + IL VE R P
Sbjct: 132 GEAVWFKAG-AQIFSEGGLDHLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLG 188
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 189 EVTDPI------------YPGGSFDPLGLADDPDAFAELKVKELKNG----RLAMF 228
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ EL N R AM + G + + T G
Sbjct: 190 VTDPIYPGGS------FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 117 IIN 119
I
Sbjct: 244 PIE 246
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YLNG GD G+D GL+ DPE + E++++RWAMLG +G L PE+ K G+
Sbjct: 67 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 127 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGP 182
Query: 176 PNEVG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
EV YPGG F+PL A E K KE+ NG +LA F
Sbjct: 183 LGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 224
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 186 VTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ G+
Sbjct: 58 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPF 117
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + + + + ++ I+ VN P+ +
Sbjct: 118 GEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGY-RVNGGPLGEG 176
Query: 172 YSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ YPGG F+PL A E K KE+ NG +LA F
Sbjct: 177 L-----DKLYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 214
Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
L+ PG + FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 177 LDKLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 229
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
MA + S A RP ++ R + + + + + P S WL G +P
Sbjct: 1 MALLCKTFSKAGVRPARAQRRVVKVEARRTVKGASSAPDSVWYGPDRPKYLGWLSG-ETP 59
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-IN 119
YL G GD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ G I
Sbjct: 60 AYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLANNGTPIA 119
Query: 120 APQWYDAGKA------------EYFASSSTLFV---IEFILFHYVEIRRWQDIKNPGSVN 164
P W+ AG E + ++ V ++ IL VE R P
Sbjct: 120 EPVWFKAGAQIFQDGGLNYLGNENLVHAQSIIVTLLVQVILMGTVEGYRVNG--GPAGEG 177
Query: 165 QDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
D + YPGG F+PL A E K KE+ NG +LA F
Sbjct: 178 LDKL------------YPGGDFFDPLGLADDPDTFAELKVKEIKNG----RLAMF 216
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
L+ PG + FDPLGLA+DP+ E+ N R AM + G +
Sbjct: 178 LDKLYPGGDFFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV 223
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 37/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ +K +
Sbjct: 69 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGV 128
Query: 119 NAPQ--WYDAGKAEYFASSSTLF-----------VIEFILFHYVEIRRWQDIK-NPGSVN 164
+ + W+ AG A+ FA + +I + F V + + + N G +
Sbjct: 129 SFGEAVWFKAG-AQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLG 187
Query: 165 Q--DPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ DP+ +PGG F+PL A E K KE+ NG +LA F
Sbjct: 188 EGLDPL------------HPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 227
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 199 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 244
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G L PE+ K G+
Sbjct: 65 GTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCLFPELLAKNGV 124
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I + V + + Y +
Sbjct: 125 KFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQ----VVLMGLIEGYRVGG 179
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 180 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 195 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 79/168 (47%), Gaps = 28/168 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL + PE+ Y EL+++RWAMLG G ++PE K G
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D YF +S + ++ ++ V + G I
Sbjct: 145 GPEAVWFKTGALLLDGNTLSYFGNSIPINLVVAVIAEVVLV---------GGAEYYRIIN 195
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
L + +PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 196 GLDL--EDKLHPGGPFDPLGLASDPDQAAILKVKEIKNG----RLAMF 237
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVK 91
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 92 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRIAGGP 147
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 148 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 189
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 151 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 204
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 83/170 (48%), Gaps = 23/170 (13%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI-G 116
A P+YL G PGD G+D GL+ DP Y + E++++RWAMLG +G + PE+ K G
Sbjct: 144 AVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTLGCVTPELLAKYSG 203
Query: 117 I-INAPQWYDAGKAEYFASSSTLFVIEFILFH---YVEIRRWQDIKNPGS----VNQDPI 168
+ I P W+ AG ++ FA ++ L H + I Q I G+ VN P
Sbjct: 204 VPIAEPVWFKAG-SQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYRVNGGPA 262
Query: 169 FKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ + PGG F+PL A E K KE+ NG +LA F
Sbjct: 263 GEGL-----DAINPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 303
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 23/170 (13%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI-G 116
A P+YL G PGD G+D GL+ DP Y + E++++RWAMLG +G + PE+ +K G
Sbjct: 128 AVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGALGCVTPELLSKYSG 187
Query: 117 I-INAPQWYDAGKAEYFASSSTLFVIEFILFH---YVEIRRWQDIKNPGS----VNQDPI 168
+ I P W+ AG ++ FA ++ L H + I Q + G+ VN P
Sbjct: 188 VPIAEPVWFKAG-SQIFAEGGLDYLGNPSLIHAQSILAILACQVVLMGGAEAYRVNGGPA 246
Query: 169 FKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ + PGG F+PL A E K KE+ NG +LA F
Sbjct: 247 GEGL-----DAINPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 287
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YLNG GD G+D GL+ DPE + E++++RWAMLG +G L PE+ K G+
Sbjct: 68 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 127
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 128 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGP 183
Query: 176 PNEVG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
EV YPGG F+PL A E K KE+ NG +LA F
Sbjct: 184 LGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 225
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 187 VTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 66 PSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 126 GEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEG---YRIAGGPL 181
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 182 GEITDPIYPGGSFDPLGLADDPEAFSELKVKELKNG----RLAMF 222
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 184 ITDPIYPGGS------FDPLGLADDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ G+
Sbjct: 58 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPF 117
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + + + + ++ I+ VN P+ +
Sbjct: 118 GEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGY-RVNGGPLGEG 176
Query: 172 YSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ YPGG F+PL A E K KE+ NG +LA F
Sbjct: 177 L-----DKLYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 214
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 45 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 104
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 105 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEA 164
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 165 EDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 202
>gi|149392118|gb|ABR25925.1| chloroplast chlorophyll a-b binding protein [Oryza sativa Indica
Group]
Length = 171
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 96 SRWAMLGVVGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILF 146
R AM+GVVGM+ PE+ K+G++ A W+ AG Y+A TLFV E L
Sbjct: 1 GRTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAGTYTYWADPYTLFVFELALV 60
Query: 147 HYVEIRRWQDIKNPGSVNQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEKEL 202
+ E RR+QD PGS+ + ++Y E YPGG +FNPL F EA+ KEL
Sbjct: 61 GFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKEL 119
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKNGVQ 123
Query: 118 INAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y S ++ + +L +VE R
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR--------- 174
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
V P+ + + YPGG F+PL A EA K KEL NG +LA F
Sbjct: 175 VGGGPLGEDL-----DKLYPGGAFDPLGLADDPEAFAELKVKELKNG----RLAMF 221
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 193 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 18/167 (10%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 101 APPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 160
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSL 174
W+ AG ++ F+ ++ L H I W + G++ ++
Sbjct: 161 KFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEG---YRVAGG 216
Query: 175 PPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 217 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 259
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 221 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 274
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL + PE+ Y EL+++RWAMLG G ++PE K G
Sbjct: 84 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 143
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D YF +S + ++ ++ V + G I
Sbjct: 144 GPEAVWFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVVLV---------GGAEYYRIIN 194
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNS--AKLAYF 214
L + +PGG F+PL A D+A K KE+ NG + + LA+F
Sbjct: 195 GLDL--EDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMLAFF 242
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 83/174 (47%), Gaps = 29/174 (16%)
Query: 34 VALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAEL 93
VA+ S S K + + W P +P++LNG GD GFDP GLA DP+ + AE+
Sbjct: 333 VAMFAASGRKSQKSDERPLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEV 392
Query: 94 VNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGK-AEYFASSSTLFVIEFILFHYVEIR 152
+ R AML VVG L+P+ K GI WY+A + A +F + +F E+
Sbjct: 393 YHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVF---EVA 443
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
R +K N DP YPG F+PLN TD KE E+ NG
Sbjct: 444 R--GVKE----NSDPT----------TIYPG--FDPLNLT-TDYTKEAEIKNGR 478
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 69/159 (43%), Gaps = 23/159 (14%)
Query: 48 EAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
E + W P P +L G PGD GFDPLGL+ DP + +E+ + R AMLG+VG +
Sbjct: 155 EERLVWFPNATPPDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCI 214
Query: 108 LPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 167
+PE+F G W+D S L + + + + S N D
Sbjct: 215 VPELFFSQG-----PWFD-------LSGFNLTRLGLVALQVIAPLEYWRGNRGFSWNGDD 262
Query: 168 IFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
Q YPG F+PL DE K KE+ NG
Sbjct: 263 GPDQ--------SYPG--FDPLRLT-DDETKLKEIKNGR 290
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 70/156 (44%), Gaps = 24/156 (15%)
Query: 51 GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
G W P P +L G P D GFDPL LA DP+ AE+ + R AML +VG ++PE
Sbjct: 535 GLWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPE 594
Query: 111 VFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
+ K W++AG + L I + E R Q G N ++
Sbjct: 595 LLGK------GAWFEAGDS---VDGLKLGFITMAIAAPTEYWRGQ-----GGFN----WQ 636
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
+ L + YPG F+PLN TD + E+ NG
Sbjct: 637 KGEL---DRSYPG--FDPLNLT-TDYTRAAEVKNGR 666
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 86/206 (41%), Gaps = 26/206 (12%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
+A +T Q A P A+ S L G N L +SS + E + W P + P
Sbjct: 672 VAGLTAQYLATGESPLANLSAHLANPIGA-NITTNLAMFASSGA--KEERELWFPNIVPP 728
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
YL G GD GFDP GLA DP + AE+ + R +ML +VG L+PE+
Sbjct: 729 RYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGNGAWF-- 786
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
Q +D FA + V + W D + +V+Q
Sbjct: 787 -QIWDKVDFNRFAVVALQVVAPLEYWRGNGGFLWNDEE---TVDQS-------------- 828
Query: 181 YPGGIFNPLNFAPTDEAKEKELANGN 206
YPG F+PLN T+ KE E+ NG
Sbjct: 829 YPG--FDPLNLT-TEYTKEAEIKNGR 851
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 51 GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
G W P P +L G P D GFDPL LA DP+ AE+ + R AML +VG ++PE
Sbjct: 909 GLWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPE 968
Query: 111 VFTKIGIINAPQWYDAGKA 129
+ K W++AG +
Sbjct: 969 LLGK------GAWFEAGDS 981
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + Y +
Sbjct: 125 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAS-----QVVLMGFVEGYRVGG 178
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KEL NG +LA F
Sbjct: 179 GPLGWGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 222
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG + FDPLGLA+DPE EL N R AM + G + + T G I
Sbjct: 185 LDKIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 83/170 (48%), Gaps = 23/170 (13%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI-G 116
A P+YL G PGD G+D GL+ DP Y + E++++RWAMLG +G + PE+ K G
Sbjct: 143 AVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTLGCVTPELLAKYSG 202
Query: 117 I-INAPQWYDAGKAEYFASSSTLFVIEFILFH---YVEIRRWQDIKNPGS----VNQDPI 168
+ I P W+ AG ++ FA ++ L H + I Q I G+ VN P
Sbjct: 203 VPIAEPVWFKAG-SQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYRVNGGPA 261
Query: 169 FKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ + PGG F+PL A E K KE+ NG +LA F
Sbjct: 262 GEGL-----DAINPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 302
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 12/168 (7%)
Query: 50 KGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
+ +WL L P YL G LPGD G+D GL DP L Y +AE++++RWAMLG +G++
Sbjct: 157 RAKWLGPLTGQVPAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAMLGALGVV 216
Query: 108 LPEVFTKIGII--NAPQWYDAGKAEYFASSSTLFVIEFILFHY--VEIRRWQDIKNPGSV 163
PE+ G+ WY AG A+ F++ ++ L H V + + G+V
Sbjct: 217 TPELLAGNGVPFGEGAVWYKAG-AQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAV 275
Query: 164 NQDPIFKQYSLPPN-EVGYPGGIFNPLNFAPTDEA----KEKELANGN 206
+ L + + YPGG F+PL A +A K KE+ NG
Sbjct: 276 EGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEVKNGR 323
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 83/176 (47%), Gaps = 39/176 (22%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ +K ++
Sbjct: 45 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 104
Query: 120 APQ--WYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
+ W+ AG +Y + S + + +L +E R
Sbjct: 105 LGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR--------- 155
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
VN P+ K +V +PG F+PL A E K KE+ NG +LA F
Sbjct: 156 VNGGPLGKGL-----DVLHPGEKFDPLGLADDPDTFAELKVKEIKNG----RLAMF 202
Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG+ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 170 PGEK-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPI 219
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 102/223 (45%), Gaps = 39/223 (17%)
Query: 2 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPT 61
A VT + +AA +P AS S + +R + L P+S P+
Sbjct: 24 ARVTMRKTAAKPKPAASGSPWY-----GPDRVLYLGPLSGE----------------PPS 62
Query: 62 YLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INA 120
YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 63 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGE 122
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNE 178
W+ AG ++ F+ ++ L H I W + G+V ++ P E
Sbjct: 123 AVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGE 178
Query: 179 VG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
V YPGG F+PL A EA K KEL NG +LA F
Sbjct: 179 VVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 217
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 179 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 232
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 36/175 (20%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL++ P++ + Y EL+++RWAMLG G ++PE F K G
Sbjct: 92 PEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 120 APQ--WY-------DAGKAEYFASSSTL-----FVIEFILFHYVEIRRWQDIKNPGSVNQ 165
P+ W+ D YF + + V E IL E R I N
Sbjct: 152 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVILVGGAEYFR---ITN------ 202
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNS--AKLAYF 214
L ++ +PGG F+PL A D+A K KE+ NG + A L +F
Sbjct: 203 -------GLGFDDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFF 250
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLP 55
MAT S + F A K S L G + R+ A K PVSS + + + +L
Sbjct: 22 MATTAMALSPSSFAGKAVKDLPSSALFGEARVTMRKTAAKAKPVSSGSPWYGSDRVLYLG 81
Query: 56 GLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 82 PLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 141
Query: 114 KIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFK 170
+ G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 142 RNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YR 197
Query: 171 QYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 198 VAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 244
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 206 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 259
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 40 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 99
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ ++ IL VE R P
Sbjct: 100 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLGE 157
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 158 VVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 196
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 158 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 211
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 34 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVK 93
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
W+ AG A+ F+ ++ L H I + V + + Y +
Sbjct: 94 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWAFQ----VVLMGLIEGYRVGGG 148
Query: 178 EVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KEL NG +LA F
Sbjct: 149 PLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNG----RLAMF 191
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE EL N R AM + G + + T G I
Sbjct: 163 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 208
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 23/227 (10%)
Query: 2 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKP--VSSSASFKVEAKGEWLPGLAS 59
AT+ + A V +P A+ +R + G R+ A KP +S + + + +L L+
Sbjct: 4 ATMAITSRALVGKP-AAGTRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPLSG 62
Query: 60 --PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 63 SPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSL 174
W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 123 KFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGG 178
Query: 175 PPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 183 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 117 II 118
I
Sbjct: 237 PI 238
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 80/173 (46%), Gaps = 38/173 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL + PE+ Y EL+++RWAMLG G ++PE K G
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 120 APQ--WY-------DAGKAEYFASSSTL-----FVIEFILFHYVEIRRWQDIKNPGSVNQ 165
P+ W+ D YF +S + + E IL E R + G +
Sbjct: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVILVGGAEYYRITN----GLDLE 200
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
D + +PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 201 DKL------------HPGGPFDPLGLASDPDQAAILKVKEIKNG----RLAMF 237
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 108/230 (46%), Gaps = 24/230 (10%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALKP-VSSSASFKVEAKGEWLPG 56
MAT T S+ F A K S L G + R+ KP V+S + + + +L
Sbjct: 1 MATTTMTLSSPAFAGKAVKNMPSSALFGDARMTMRKTGAKPKVASGSPWYGPDRVLYLGP 60
Query: 57 LAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
L+ P+YL G GD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +
Sbjct: 61 LSGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 115 IGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQ 171
G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 NGVQFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRI 176
Query: 172 YSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 177 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 222
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 23/227 (10%)
Query: 2 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKP--VSSSASFKVEAKGEWLPGLAS 59
AT+ + A V +P A+ +R + G R+ A KP +S + + + +L L+
Sbjct: 4 ATMAITSRALVGKP-AAGTRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPLSG 62
Query: 60 --PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 63 SPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSL 174
W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 123 KFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGG 178
Query: 175 PPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 183 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 79/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 131
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + IL VE R P
Sbjct: 132 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGE 189
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 190 ITDPI------------YPGGSFDPLGLADDPDAFAELKVKELKNG----RLAMF 228
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ EL N R AM + G + T G
Sbjct: 190 ITDPIYPGGS------FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFXQAIVTGKG 243
Query: 117 II 118
I
Sbjct: 244 PI 245
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YLNG PGD G+D GL+ DPE Y + E++++RWAMLG +G + PE+ K G+
Sbjct: 51 SPSYLNGEYPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVS 110
Query: 118 INAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
W+ AG +Y + S + I + ++ I+ VN P +
Sbjct: 111 FGEAVWWKAGSQIFAPGGLDYLGNPSLIHAQSIIAIVFSQVLLMGLIEGY-RVNGGPAGE 169
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ YPG F+PL A E + KE+ NG +LA F
Sbjct: 170 GL-----DALYPGEAFDPLGLADDPDTFAELRVKEIKNG----RLAMF 208
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG+ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 171 LDALYPGE-AFDPLGLADDPDTFAELRVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 225
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 18/167 (10%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 64 APPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSL 174
W+ AG ++ F+ ++ L H I W + G++ ++
Sbjct: 124 KFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEG---YRVAGG 179
Query: 175 PPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 222
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W V + + Y +
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAVWAS-----QVVLMGLIEGYRVGG 178
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 GPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 12/167 (7%)
Query: 50 KGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
+ +WL L P YL G LPGD G+D GL DP L Y +AE++++RWAMLG +G++
Sbjct: 157 RAKWLGPLTGQVPAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAMLGALGVV 216
Query: 108 LPEVFTKIGII--NAPQWYDAGKAEYFASSSTLFVIEFILFHY--VEIRRWQDIKNPGSV 163
PE+ G+ WY AG A+ F++ ++ L H V + + G+V
Sbjct: 217 TPELLAGNGVPFGEGAVWYKAG-AQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAV 275
Query: 164 NQDPIFKQYSLPPN-EVGYPGGIFNPLNFAPTDEA----KEKELANG 205
+ L + + YPGG F+PL A +A K KE+ NG
Sbjct: 276 EGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEVKNG 322
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 126
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 127 GEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRIAGGPL 182
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 183 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 223
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 77 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 136
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 137 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 192
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 193 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 233
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 195 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 248
Query: 117 IIN 119
I
Sbjct: 249 PIE 251
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 126
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + IL VE R P
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 184
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 185 VVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 223
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 99/231 (42%), Gaps = 59/231 (25%)
Query: 4 VTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYL 63
+T + SAA +P AS S + +R + L P+S P+YL
Sbjct: 27 ITMRKSAAKPKPAASGSPWYGA-----DRVLYLGPLSGE----------------PPSYL 65
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQ 122
G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV 125
Query: 123 WYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 167
W+ AG +Y + S ++ ++ +L VE R P DP
Sbjct: 126 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGEVVDP 183
Query: 168 IFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 184 L------------YPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 218
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 180 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 233
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125
Query: 119 NAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y S ++ + +L +VE R P
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGE 183
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 184 GLDPI------------YPGGAFDPLGLADDPDAFAELKVKEIKNG----RLAMF 222
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 104/239 (43%), Gaps = 43/239 (17%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGL 57
MA+ T S+ F A K S +G+++ KPV S + + + +L L
Sbjct: 1 MASTTMALSSPSFAGKAVKFSPSTPEIQGTGRVSMRKTTKPVPSGSPWYGPDRVLYLGPL 60
Query: 58 AS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 116 GI-INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKN 159
G+ W+ AG +Y + S ++ + IL VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--G 178
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P DP+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 PLGEVTDPL------------YPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 183 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 87 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFVIPEAFNKFGADC 146
Query: 120 APQ--WYDAG 127
P+ W+ G
Sbjct: 147 GPEAVWFKTG 156
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 22/206 (10%)
Query: 23 LTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGL 78
+TG+ + R+ K PVSS + + + ++L + +P+YL G PGD G+D GL
Sbjct: 27 ITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGL 86
Query: 79 AEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSST 137
+ DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG ++ F+
Sbjct: 87 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGL 145
Query: 138 LFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 192
++ L H I W + G++ ++ P EV YPGG F+PL A
Sbjct: 146 DYLGNPSLVHAQSILAIWACQVVLMGAIEG---YRVAGGPLGEVTDPLYPGGSFDPLGLA 202
Query: 193 PTDEA----KEKELANGNNSAKLAYF 214
EA K KE+ NG +LA F
Sbjct: 203 DDPEAFAELKVKEIKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 122
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 123 GEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPL 178
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 179 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 219
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 181 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 234
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 76 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 135
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 136 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 191
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPGG F+PL A +A K KEL NG +LA F
Sbjct: 192 GEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNG----RLAMF 232
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ EL N R AM + G + + T G
Sbjct: 194 ITDPIYPGGS------FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 247
Query: 117 II 118
I
Sbjct: 248 PI 249
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE ++ E+++ RWAMLG +G + PE+ +K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWAMLGALGCVFPEILSKNGVT 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W V + Y +
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWAS-----QVVLMGFVEGYRVGG 178
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 GPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G++ ++ P
Sbjct: 126 GEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEG---YRVAGGPL 181
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 182 GEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 194 FDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YLNG GD G+D GL+ DPE + E++++RWAMLG +G L PE+ K G+
Sbjct: 67 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 127 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGP 182
Query: 176 PNEVG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
EV YPGG F+PL A E K KE+ NG +LA F
Sbjct: 183 LGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 224
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 186 VTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 126
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + IL VE R P
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 184
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 185 VVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 223
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 134
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 135 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 190
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPGG F+PL A +A K KEL NG +LA F
Sbjct: 191 GEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNG----RLAMF 231
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ EL N R AM + G + + T G
Sbjct: 193 ITDPIYPGGS------FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 246
Query: 117 II 118
I
Sbjct: 247 PI 248
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLP 55
MAT S + F A K S L G + R+ A K PVSS + + + +L
Sbjct: 1 MATTAMALSPSSFAGKAVKDLPSSALFGEARVTMRKTAAKAKPVSSGSPWYGSDRVLYLG 60
Query: 56 GLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 PLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 114 KIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFK 170
+ G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 RNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YR 176
Query: 171 QYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 VAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 40/210 (19%)
Query: 27 SGKLNREVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPEN 84
+G+++ + +PVSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 30 NGRISMKRTTRPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
Query: 85 LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS 136
+ E+++ RWAM G +G + PE+ ++ G+ W+ AG +Y + S
Sbjct: 90 FAKNRELEVIHCRWAMPGALGCVFPELLSRNGVKFGEAVWFKAGSQIFQEGGLDYLGNPS 149
Query: 137 --------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNP 188
++ + IL VE R P DPI YPGG F+P
Sbjct: 150 LIHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGSFDP 195
Query: 189 LNFAPTDEA----KEKELANGNNSAKLAYF 214
L A EA K KE+ NG +LA F
Sbjct: 196 LGLADVPEAFAELKVKEIKNG----RLAMF 221
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 79/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 134
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + IL VE R P
Sbjct: 135 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGE 192
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 193 ITDPI------------YPGGSFDPLGLADDPDAFAELKVKELKNG----RLAMF 231
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ EL N R AM + G + + T G
Sbjct: 193 ITDPIYPGGS------FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 246
Query: 117 II 118
I
Sbjct: 247 PI 248
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 40 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 99
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ ++ IL VE R P
Sbjct: 100 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLGE 157
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 158 VVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 196
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 158 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 211
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 23/227 (10%)
Query: 2 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKP--VSSSASFKVEAKGEWLPGLAS 59
AT+ + A V +P A+ +R + G R+ A KP +S + + + +L L+
Sbjct: 4 ATMALTSRALVGKP-ATSTRDVFGEGRITMRKTAGKPKPAASGSPWYGADRVLYLGPLSG 62
Query: 60 --PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 63 QPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSL 174
W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 123 KFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGG 178
Query: 175 PPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 183 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 117 II 118
+
Sbjct: 237 PV 238
>gi|157965829|gb|ABW06951.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 556
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 15/171 (8%)
Query: 36 LKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVN 95
++P + A+ E + W+PG+ +P +LN +L GD GFDPL L +DP L+ + +E+ +
Sbjct: 161 VRPTPAPAAASTE-RLLWIPGVKAPEHLNNTLVGDRGFDPLNLGKDPNALERFRVSEVFH 219
Query: 96 SRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQ 155
R AML G L+PE+ + WYDA K + +T + + +E+ R+
Sbjct: 220 GRLAMLAFAGALVPELLRGVA------WYDAVKTPDPITLTTFLLALAVATGPIELWRYD 273
Query: 156 DIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
++P K ++ YPG +P ++ ++EAK KEL NG
Sbjct: 274 GRFPAWEEGEEPEPKV-----ADIAYPGA--DPFEWS-SEEAKLKELKNGR 316
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 15/171 (8%)
Query: 36 LKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVN 95
++P + A+ E + W+PG+ +P +LN +L GD GFDPL L ++P L+ + +E+ +
Sbjct: 362 VRPTPAPAAASTE-RLLWIPGVKAPEHLNNTLVGDRGFDPLNLGKNPNALERFRVSEVFH 420
Query: 96 SRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQ 155
R AML G L+PE+ + WYDA K + +T + + +E+ R+
Sbjct: 421 GRLAMLAFAGALVPELLRGVA------WYDAVKTPDPITLTTFLLALAVATGPIELWRYD 474
Query: 156 DIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
++P K + + YPG +P ++ ++EAK KEL NG
Sbjct: 475 GRFPAWEEGEEPEPKVAN-----IAYPGA--DPFEWS-SEEAKLKELKNGR 517
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 78 LAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSST 137
L +DP L+ + +E+ + R AML G L+PE+ + WYDA + +T
Sbjct: 1 LGKDPNALERFRVSEVFHGRLAMLAFAGALVPELLRGVA------WYDAVHTPDPITLTT 54
Query: 138 LFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA 197
++ +E+ R+ ++P K ++ YPG +P ++ ++EA
Sbjct: 55 FLLVLAGATGPIELWRYDGRFPAWEEGEEPEPKV-----ADIAYPGA--DPFEWS-SEEA 106
Query: 198 KEKELANGN 206
K KEL NG
Sbjct: 107 KLKELKNGR 115
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 32/160 (20%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ K G+
Sbjct: 66 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGV- 124
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
G+A +F + ++ + +L +E R P DP+
Sbjct: 125 ------KFGEAVWFKA---IWASQVVLMGLIEGYRVGG--GPLGEGLDPL---------- 163
Query: 179 VGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 164 --YPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 197
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 169 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 215
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 22/206 (10%)
Query: 23 LTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGL 78
+TG+ + R+ K PVSS + + + ++L + +P+YL G PGD G+D GL
Sbjct: 27 ITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGL 86
Query: 79 AEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSST 137
+ DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG ++ F+
Sbjct: 87 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGL 145
Query: 138 LFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 192
++ L H I W + G++ ++ P EV YPGG F+PL A
Sbjct: 146 DYLGNPSLVHAQSILAIWACQVVLMGAIEG---YRVAGGPLGEVTDPLYPGGSFDPLGLA 202
Query: 193 PTDEA----KEKELANGNNSAKLAYF 214
EA K KE+ NG +LA F
Sbjct: 203 DDPEAFAELKVKEIKNG----RLAMF 224
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 117 IIN 119
++
Sbjct: 240 PLD 242
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 122
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ ++ +L VE R P
Sbjct: 123 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGE 180
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 181 VVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 219
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 181 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 234
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 40 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 99
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 100 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEG---YRIAGGPL 155
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 156 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 196
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 158 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 211
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 40 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 99
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 100 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEG---YRIAGGPL 155
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 156 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 196
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 158 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 211
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 79/176 (44%), Gaps = 40/176 (22%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG A+ F+ ++ + +L +VE R P
Sbjct: 126 GEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A +A K KEL NG +LA F
Sbjct: 183 EGLDPL------------YPGGAFDPLGLADDPDAFAELKVKELKNG----RLAMF 222
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 107/230 (46%), Gaps = 25/230 (10%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG 56
MA T S+ F A K R L G+ G+++ KP S + + + ++L
Sbjct: 1 MAASTMALSSPSFAGKAVKLSPAPRELMGN-GRVSMRRTAKPTPSGSPWYGPDRVKYLSP 59
Query: 57 LAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 115 IGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQ 171
G+ W+ AG A+ F+ ++ L H I W + G+V ++
Sbjct: 120 NGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRV 175
Query: 172 YSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 176 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 183 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 60 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVK 119
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ + +L +VE R
Sbjct: 120 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR-------- 170
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA----PTDEAKEKELANGNNSAKLAYF 214
V P+ + ++V YPGG F+PL A E K KEL NG +LA F
Sbjct: 171 -VGGGPLGEGL----DKV-YPGGAFDPLGLADDPDTAAELKVKELKNG----RLAMF 217
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 180 LDKVYPG-GAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 234
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 73/168 (43%), Gaps = 22/168 (13%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P YLNG L GD G+DPLGL +DPE + Y + EL+++RWAML G+L+PE G I
Sbjct: 42 PDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGLQANGANI 101
Query: 119 NAPQWYD-------AGKAEYFASS----------STLFVIEFILFHYVEIRRWQDIKNPG 161
W++ G YFA + +E L VE R G
Sbjct: 102 KGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAVEVGLMGAVEFYRRNGSGPAG 161
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANG 205
F + YPGG F+PL A E K KE+ NG
Sbjct: 162 YSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQELKVKEIKNG 209
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DPE L+ E+ N R AM+ V+G + T G
Sbjct: 186 FDPLGLADDPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEG 229
>gi|159478202|ref|XP_001697193.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
gi|60391855|sp|Q93WD2.3|CB29_CHLRE RecName: Full=Chlorophyll a-b binding protein CP29; AltName:
Full=Lhcbm4
gi|15430560|dbj|BAB64415.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|15430568|dbj|BAB64419.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|27542567|gb|AAO16494.1| CP29-like protein [Chlamydomonas reinhardtii]
gi|158274667|gb|EDP00448.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 280
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 77/198 (38%), Gaps = 58/198 (29%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPE---------------------- 83
K + WLP P +L+GSLPGD GFDPLGL++ E
Sbjct: 46 KYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVE 105
Query: 84 -----------------------NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
L + + EL++ RWAML +G L+ E T +
Sbjct: 106 AIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGV----- 160
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
W +AGK E +S + F + + W ++ G ++ P +
Sbjct: 161 -SWVEAGKVELDGASYAGLSLPFSITQLI----WIEVILVGGAE---FYRNSETNPEKRC 212
Query: 181 YPGGIFNPLNFAPTDEAK 198
YPGG+F+PL A DE +
Sbjct: 213 YPGGVFDPLKLASEDEER 230
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 79/173 (45%), Gaps = 38/173 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG + GD G+DP GL + PEN Y EL+++RWAMLG G ++PE K G
Sbjct: 85 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGCIIPEALNKYGANC 144
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVI-----EFILFHYVEIRRWQDIKNPGSVNQ 165
P+ W+ D YF + + ++ E +L E R + G +
Sbjct: 145 GPEAVWFKTGALLLDGNTLSYFGKNIPINLVLAVVGEVVLLGGAEYYRITN----GLDFE 200
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
D + +PGG F+PL+ A E K KE+ NG +LA F
Sbjct: 201 DKL------------HPGGPFDPLDLAKDPEQGALLKVKEIKNG----RLAMF 237
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 101/203 (49%), Gaps = 22/203 (10%)
Query: 26 SSGKLN-REVALKPVSSSAS-FKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAED 81
S+G++ R+ A KP +SS S + + ++L + P+YL G PGD G+D GL+ D
Sbjct: 30 SNGRVTMRKTAGKPAASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 89
Query: 82 PENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFV 140
PE + E+++ RWAMLG +G + PE+ + G+ W+ AG A+ F+ ++
Sbjct: 90 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYL 148
Query: 141 IEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTD 195
L H I W + G+V ++ P EV YPGG F+PL A
Sbjct: 149 GNPSLIHAQSILAIWATQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDP 205
Query: 196 EA----KEKELANGNNSAKLAYF 214
EA K KE+ NG +LA F
Sbjct: 206 EAFAELKVKEIKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 79/176 (44%), Gaps = 40/176 (22%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG A+ F+ ++ + +L +VE R P
Sbjct: 126 GEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A +A K KEL NG +LA F
Sbjct: 183 EGLDPL------------YPGGAFDPLGLADDPDAFAELKVKELKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DP+ EL N R AM + G + + T G +
Sbjct: 194 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTDKGPVQ 240
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K G+
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVK 123
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
W+ AG A+ F+ ++ L H I + V + Y +
Sbjct: 124 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQ----VVLMGFIEGYRVGGG 178
Query: 178 EVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 PLGEGLDSIYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 184 LDSIYPG-GAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 40 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 99
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ ++ IL VE R P
Sbjct: 100 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLGE 157
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 158 VVDPL------------YPGGSFDPLGLADDPEAFAEXKVKELKNG----RLAMF 196
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 158 VVDPLYPGGS------FDPLGLADDPEAFAEXKVKELKNGRLAMFSMFGFFVQAIVTGKG 211
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILARNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + Y +
Sbjct: 125 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAS-----QVVLMGFVEGYRVGG 178
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KEL NG +LA F
Sbjct: 179 GPLGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 222
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG + FDPLGLA+DPE EL N R AM + G + + T G I
Sbjct: 185 LDKIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|253761884|ref|XP_002489316.1| hypothetical protein SORBIDRAFT_0010s017110 [Sorghum bicolor]
gi|241946964|gb|EES20109.1| hypothetical protein SORBIDRAFT_0010s017110 [Sorghum bicolor]
Length = 121
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 93 LVNSRWAMLGVVGMLLPEVFTKIGIINAPQ-WYDAGKAEYFASSSTLFVIEFILFHYVEI 151
+++ WAML G+L+P++ + G IN W+DAG EYF TLFV++ L + E
Sbjct: 1 MMHGWWAMLAAAGILIPDLLVRCGFINTGYLWFDAGSREYFVDPWTLFVLQMALVGWAES 60
Query: 152 RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 186
RR D V+ +P F P ++GYPGG++
Sbjct: 61 RRCADFLRRSCVDIEPCFANRKNPVLDIGYPGGVW 95
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 46 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVK 105
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
W+ AG A+ F+ ++ L H I + V + + Y +
Sbjct: 106 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQ----VVLMGLIEGYRVGGG 160
Query: 178 EVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 161 PLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 203
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 175 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 220
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 60 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVK 119
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ + +L +VE R
Sbjct: 120 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR-------- 170
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA----PTDEAKEKELANGNNSAKLAYF 214
V P+ + ++V YPGG F+PL A E K KEL NG +LA F
Sbjct: 171 -VGGGPLGEGL----DKV-YPGGAFDPLGLADDPDTAAELKVKELKNG----RLAMF 217
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 180 LDKVYPG-GAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 234
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E++++RWAMLG +G + PE+ +K G+
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCIFPELLSKNGVK 123
Query: 118 INAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y S ++ + +L ++E R P
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFIEGYRVGG--GPLG 181
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 182 EGLDPL------------YPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 193 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 31/174 (17%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P YL G PGD G+D GL+ DP+ Y + EL+++RWA+LG +G+L PE+ ++ +
Sbjct: 50 TPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGV 109
Query: 119 N--APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK------------NPGSVN 164
P W+ AG A+ FA+ ++ L H I ++ N GS
Sbjct: 110 QFGEPVWFKAG-AQIFAAGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGS-- 166
Query: 165 QDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ L + YPGG F+PL A E K KE+ NG +LA F
Sbjct: 167 ------EGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNG----RLAMF 210
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DP+ E+ N R AM +G + + T G
Sbjct: 182 FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKG 225
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 62 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVK 121
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ + +L +VE R
Sbjct: 122 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR-------- 172
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA----PTDEAKEKELANGNNSAKLAYF 214
V P+ + ++V YPGG F+PL A E K KEL NG +LA F
Sbjct: 173 -VGGGPLGEGL----DKV-YPGGAFDPLGLADDPDTAAELKVKELKNG----RLAMF 219
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 182 LDKVYPG-GAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 236
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 38 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 97
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ ++ IL VE R P
Sbjct: 98 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLGE 155
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 156 VVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 194
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 156 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 209
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 104/240 (43%), Gaps = 44/240 (18%)
Query: 1 MATVTTQASAAVFRPCA-SKSRFLTGSSGKLNREVALKPVSSSASFKV---EAKGEWLPG 56
MAT Q SA V + S++ F+ + ++ SA + E + ++L
Sbjct: 1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGP 60
Query: 57 LA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
+ +P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120
Query: 115 IGI-INAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIK 158
G+ W+ AG +Y S ++ + +L +VE R
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG-- 178
Query: 159 NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P D I YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 GPLGEGLDKI------------YPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 29/235 (12%)
Query: 1 MATVTTQA------SAAVFRPCASKSRFLTGSSGKLNREVAL---KPVSSSASFKVEAKG 51
MAT +T A + + + + L G G++ ++ K VSS + + +
Sbjct: 1 MATSSTMALSSPSLAGQAVKLAPNVTELLAGDQGRVTMRKSVAKSKAVSSGSPWYGPDRV 60
Query: 52 EWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
++L + P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + P
Sbjct: 61 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 120
Query: 110 EVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQD 166
E+ ++ G+ W+ AG A+ F+ ++ L H I W + G+V
Sbjct: 121 ELLSRNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWATQVILMGAVEG- 178
Query: 167 PIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
++ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 --YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 227
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 189 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 242
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 127 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGP 182
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 183 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 224
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 19 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVK 78
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ ++ +L +VE R
Sbjct: 79 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR-------- 129
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
V P+ + ++V YPGG F+PL A E K KEL NG +LA F
Sbjct: 130 -VGGGPLGEGL----DKV-YPGGAFDPLGLADDPDTFAELKVKELKNG----RLAMF 176
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 139 LDKVYPG-GAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 193
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 127 GEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPL 182
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 183 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 223
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 93 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 152
Query: 120 APQ--WYDAG 127
P+ W+ G
Sbjct: 153 GPEAVWFKTG 162
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ ++ G+
Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGP 180
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 222
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 38 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 97
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ ++ IL VE R P
Sbjct: 98 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLGE 155
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 156 VVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 194
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 156 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 209
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 79/168 (47%), Gaps = 36/168 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P Y+NG L GD G+DPLGL + ++ Y E+++ RWAMLGVVGML+PE G N
Sbjct: 78 PAYMNGELAGDYGYDPLGLG-NKGGVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTN 136
Query: 120 --APQWYDAGKAEYFASSSTL--------------FVIEFILFHYVEIRRWQDIKNPGSV 163
W+D+G A S+TL + E +F +E R+Q P
Sbjct: 137 IKGAVWWDSG-AVLLDPSATLTWAGIPNPVPLALAVIFEVAVFFLIENYRYQQ-DGPWGT 194
Query: 164 NQDPIFKQYSLPPNEVGYPGG-IFNPLNFA----PTDEAKEKELANGN 206
DP+ YPGG F+PL A DE K KE+ NG
Sbjct: 195 GLDPL------------YPGGKYFDPLGLASDPSKADELKVKEIKNGR 230
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 44 SFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
+++ + G W GL P Y PG FDPLGLA DP E+ N R AM+
Sbjct: 183 NYRYQQDGPWGTGL-DPLY-----PGGKYFDPLGLASDPSKADELKVKEIKNGRLAMMAF 236
Query: 104 VGMLLPEVFTKIG 116
+G ++ TK G
Sbjct: 237 LGFVVQYFVTKEG 249
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 20/195 (10%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
R+ K VSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 34 RKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNR 93
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHY 148
+ E+++SRWAMLG +G++ PE ++ G+ W+ AG ++ F+ ++ L H
Sbjct: 94 ELEVIHSRWAMLGALGIVFPEPLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHA 152
Query: 149 VEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KE 199
I W + G+V ++ P EV YPGG F+PL A EA K
Sbjct: 153 QSILAIWATQVILMGAVEG---YRIAGGPLGEVTDPTYPGGSFDPLGLADDPEAFAELKV 209
Query: 200 KELANGNNSAKLAYF 214
KEL NG +LA F
Sbjct: 210 KELKNG----RLAMF 220
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ PTY GS FDPLGLA+DPE EL N R AM V G + + T G
Sbjct: 182 VTDPTYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSVFGFFVQAIVTGKG 235
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + S + + ++ ++ + P+ +
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEA 185
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 186 EDLL-----YPGGSFDPLGLAADPEAFAELKVKEIKNG----RLAMF 223
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 79/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 69 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 128
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + +L VE R P
Sbjct: 129 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGE 186
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A EA K KEL NG +LA F
Sbjct: 187 VVDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 225
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 187 VVDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ + +L +VE R P
Sbjct: 125 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRIGG--GPL 181
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 182 GEGLDPL------------YPGGAFDPLGLADDPDAFAELKVKEIKNG----RLAMF 222
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 103/223 (46%), Gaps = 25/223 (11%)
Query: 5 TTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS---PT 61
TT A ++ +P SR + S + V+++ S S S A G S P+
Sbjct: 10 TTLAGQSLLKPVNELSRKVGTSEAR----VSMRKSSGSDSIWYGADRPKFLGPFSGETPS 65
Query: 62 YLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INA 120
YLNG GD G+D GL+ DPE + E++++RWAMLG +G + PE+ K G+
Sbjct: 66 YLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGE 125
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNE 178
W+ AG A+ F+ ++ L H I W + G+V ++ P E
Sbjct: 126 AVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRVAGGPLGE 181
Query: 179 VG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
V YPGG F+PL A E K KE+ NG +LA F
Sbjct: 182 VTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 220
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 182 VTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 134
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 135 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 190
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 191 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 231
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 193 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 246
Query: 117 II 118
I
Sbjct: 247 PI 248
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 108/230 (46%), Gaps = 24/230 (10%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALKPVSSSAS-FKVEAKGEWLPG 56
MAT T S+ F A K S L G + R+ KP ++S S + + +L
Sbjct: 1 MATTTMALSSPAFAGKAVKNVPSSGLFGEARMTMRKTGAKPKAASGSPWYGPDRVLYLGP 60
Query: 57 LAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
L+ P+YL G GD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +
Sbjct: 61 LSGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 115 IGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQ 171
G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 NGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRI 176
Query: 172 YSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 177 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 222
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 23/168 (13%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI-GI- 117
P+YL G PGD G+D GL+ DP Y + E++++RWAMLG +G + PE+ K G+
Sbjct: 133 PSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGALGCVTPELLAKYSGVP 192
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFH---YVEIRRWQDIKNPGS----VNQDPIFK 170
I P W+ AG ++ FA ++ L H + I Q I G+ VN P +
Sbjct: 193 IAEPVWFKAG-SQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYRVNGGPAGE 251
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ PGG F+PL A E K KE+ NG +LA F
Sbjct: 252 GL-----DAINPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 290
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + S + + ++ ++ + P+ +
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEA 185
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 186 EDLL-----YPGGSFDPLGLATDPEAFAELKVKEIKNG----RLAMF 223
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ ++ G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 124
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 180
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 183 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 126 GEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPL 181
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 182 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 222
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ ++ G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 124
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 180
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 183 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 128 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 183
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 184 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 126 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 181
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 182 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 184 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 23/168 (13%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI-GI- 117
P+YL G PGD G+D GL+ DP Y + E++++RWAMLG +G + PE+ K G+
Sbjct: 146 PSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGALGCVTPELLAKYSGVP 205
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFH---YVEIRRWQDIKNPGS----VNQDPIFK 170
I P W+ AG ++ FA ++ L H + I Q I G+ VN P +
Sbjct: 206 IAEPVWFKAG-SQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYRVNGGPAGE 264
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ PGG F+PL A E K KE+ NG +LA F
Sbjct: 265 GL-----DAINPGGAFDPLGLADDPDTFAELKVKEIKNG----RLAMF 303
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 134
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 135 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 190
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 191 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 231
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 193 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 246
Query: 117 II 118
I
Sbjct: 247 PI 248
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ ++ G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 124
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 180
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 183 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 131
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 132 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 187
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 188 REVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 228
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 190 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 117 IIN 119
I
Sbjct: 244 PIE 246
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P YL G PGD G+D GL+ DP+ Y + EL+++RWA+LG +G+L PE+ ++ +
Sbjct: 50 TPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGV 109
Query: 119 N--APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK------------NPGSVN 164
P W+ AG A+ FA ++ L H I ++ N GS
Sbjct: 110 QFGEPVWFKAG-AQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGS-- 166
Query: 165 QDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ L + YPGG F+PL A E K KE+ NG +LA F
Sbjct: 167 ------EGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNG----RLAMF 210
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DP+ E+ N R AM +G + + T G
Sbjct: 182 FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKG 225
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 138
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G++ ++ P
Sbjct: 139 GEAVWFKAG-AQIFSEGGLDYLGSPNLVHAQSILAIWACQVILMGAIEG---YRVAGGPL 194
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KEL NG +LA F
Sbjct: 195 GEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKNG----RLAMF 235
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
PG N FDPLGLA+DP+ EL N R AM + G + + T G
Sbjct: 203 PGGN-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 250
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 28/168 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL + PE+ Y EL+++RWAMLG G ++PE K G
Sbjct: 88 PEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKFGANC 147
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D YF +S + +I ++ V + + + + D
Sbjct: 148 GPEAVWFKTGALLLDGNTLNYFGNSIPINLILAVVAEVVLVGGAEYYRITNGLEFDDKL- 206
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
+PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 207 ----------HPGGPFDPLGLATDPDQAALLKVKEIKNG----RLAMF 240
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YLNG GD G+D GL+ DPE + E++++RWAMLG +G L PE+ K G+
Sbjct: 63 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 122
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 123 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRVAGGP 178
Query: 176 PNEVG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
EV YPGG F+PL A E K KE+ NG +LA F
Sbjct: 179 LGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 220
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 182 VTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P YL G PGD G+D GL+ DP+ Y + EL+++RWA+LG +G+L PE+ ++ +
Sbjct: 50 TPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGV 109
Query: 119 N--APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK------------NPGSVN 164
P W+ AG A+ FA ++ L H I ++ N GS
Sbjct: 110 QFGEPVWFKAG-AQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGS-- 166
Query: 165 QDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ L + YPGG F+PL A E K KE+ NG +LA F
Sbjct: 167 ------EGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNG----RLAMF 210
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DP+ E+ N R AM +G + + T G
Sbjct: 182 FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKG 225
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 90/180 (50%), Gaps = 26/180 (14%)
Query: 52 EWLPG--LAS-PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
+WLP LA P YL G PGD G+D LGL+ DPE Y +AEL+++RWAMLG +G +
Sbjct: 132 KWLPDAFLAGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAMLGALGCIF 191
Query: 109 PEVFT-KIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFH---YVEIRRWQDIKNPGSV 163
PE+ G+ + P W+ AG A S ++ L H + I Q + G+
Sbjct: 192 PEILAMNYGVGLEEPVWFKAG-ALVLNDKSIDYLGSPQLVHASSIIAIAAAQVLLMGGA- 249
Query: 164 NQDPIFKQYSLPPN----EVGYPGG-IFNPLNFAPTD----EAKEKELANGNNSAKLAYF 214
++ + PN + +PGG FNPL F + E K KE+ NG +LA F
Sbjct: 250 ---EAYRASGVAPNGEEFDKMHPGGYYFNPLKFGKDEADLAELKVKEIKNG----RLAMF 302
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 78/176 (44%), Gaps = 40/176 (22%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG A+ F+ ++ +L +VE R P
Sbjct: 126 GEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWATRVVLMGFVEGYRVGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A +A K KEL NG +LA F
Sbjct: 183 EGLDPL------------YPGGAFDPLGLADDPDAFAELKVKELKNG----RLAMF 222
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEG---YRIAGGPL 180
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 GEVTDPLYPGGSFDPLGLADDPEAFSELKVKEIKNG----RLAMF 221
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 183 VTDPLYPGGS------FDPLGLADDPEAFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 80/175 (45%), Gaps = 36/175 (20%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD +D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 66 TPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVK 125
Query: 118 INAPQWYDAGKAEYFA--------------SSSTLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG A+ F+ + S L + F + I ++ P
Sbjct: 126 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVGGGPLGE 184
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 185 GLDPL------------YPGGAFDPLGLADDPEAFAELKVKELKNG----RLAMF 223
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE EL N R AM + G + + T G I
Sbjct: 195 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|308812794|ref|XP_003083704.1| CP29-like light-harvesting chlorophyll a/b binding protein chlor
(IC) [Ostreococcus tauri]
gi|63029289|gb|AAY27543.1| chloroplast chlorophyll a/b-binding protein CP29 precursor Lhcb4
[Ostreococcus tauri]
gi|116055585|emb|CAL58253.1| CP29-like light-harvesting chlorophyll a/b binding protein chlor
(IC) [Ostreococcus tauri]
Length = 257
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 86/218 (39%), Gaps = 77/218 (35%)
Query: 37 KPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW--------- 87
+PV + K + W PG P +L+GSLPGD GFDP GL + E L++
Sbjct: 27 RPVRKGPAPKAGDECLWRPGAVRPAWLDGSLPGDRGFDPFGLGKPAEYLQFDLDALDGSA 86
Query: 88 -----------------------------------YVQAELVNSRWAMLGVVGMLLPEVF 112
+ + EL++SRWAMLG+VG E
Sbjct: 87 ARNPSGNVIGKLKKADSKPKARTIVPYDEAFDIMRFRECELLHSRWAMLGLVGAAAAEAA 146
Query: 113 TKIGIINAPQWYDAGKAE-----YFA-----SSSTLFVIEFILFHYVEIRRWQDIKNPGS 162
T I W DAGK E Y + + L +IE + Y+EI R ++
Sbjct: 147 TGI------TWADAGKIELEQPQYLGFPIQLTVTQLTIIEVLAMGYLEIARSAELDQ--- 197
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEK 200
N+ YPGG F+PL + +A+E+
Sbjct: 198 --------------NKRMYPGGAFDPLGYVAKADAQEE 221
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 26/232 (11%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWL 54
MA T S++ F A K S +TG+ R+ K P+SS + + + ++L
Sbjct: 1 MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIF 169
+ G+ W+ AG ++ F+ ++ L H I W + G+V +
Sbjct: 121 ARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---Y 176
Query: 170 KQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ P EV YPGG F+PL A EA K K + NG +LA F
Sbjct: 177 RVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNG----RLAMF 224
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE + N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 34 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 93
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 94 GEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPL 149
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 150 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 190
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 152 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 205
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
++P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ K G
Sbjct: 68 SAPSYLTGEFPGDYGWDSAGLSSDPETFKRYRELELIHARWAMLGALGCVTPELLAKNGT 127
Query: 118 -INAPQWYDAG 127
I P W+ AG
Sbjct: 128 PIAEPVWFKAG 138
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG FDPL LAEDP+ E+ N R AM + G + + T G I
Sbjct: 194 PGGPWFDPLALAEDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPI 244
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 125 FGEAVWFKAG-SQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGP 180
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 222
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 138
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G++ ++ P
Sbjct: 139 GEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPL 194
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 195 GEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNG----RLAMF 235
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG N FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 203 PGGN-FDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 252
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 37 KPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
KPVSS + + + ++L + P+YL G PGD G+D GL+ DPE + E++
Sbjct: 41 KPVSSGSPWYGTDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100
Query: 95 NSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR 153
+ RWAMLG +G + PE+ + G+ W+ AG A+ F+ ++ L H I
Sbjct: 101 HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILA 159
Query: 154 -W-QDIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELAN 204
W + G+V ++ P EV YPGG F+PL A EA K KE+ N
Sbjct: 160 IWASQVILMGAVEG---YRIGGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 216
Query: 205 GNNSAKLAYF 214
G +LA F
Sbjct: 217 G----RLAMF 222
Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T
Sbjct: 184 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGP 180
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 222
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGP 180
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YLNG GD G+D GL+ DPE + E++++RWAMLG +G L PE+ K G+
Sbjct: 67 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 126
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 127 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA--GGPLG 184
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DPI YPGG F+PL A E K KE+ NG +LA F
Sbjct: 185 DVTDPI------------YPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L + P Y GS FDPLGLA+DP+ E+ N R AM + G + + T
Sbjct: 183 LGDVTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 114 KIG 116
G
Sbjct: 237 GKG 239
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 30 LNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
+NR V V S + + G + PG YLN LPG+ FDPL L ++ L+ Y
Sbjct: 18 VNRSV----VRPSIRVQAQRAGNFAPGSEPKEYLN-DLPGNFNFDPLELGKEKGTLQRYR 72
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAG-KAEYFASSSTLFVIEFILFHY 148
+AEL++ RWAMLG G L EV +AP W G K +F + +
Sbjct: 73 EAELIHCRWAMLGAAGCLAVEVLGLGNWYDAPLWAVTGDKPTWFGIEVPFDIATILGVEV 132
Query: 149 VEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELAN 204
V + + ++N NQD + K+ YPGG F+PL F+ ++ K KEL N
Sbjct: 133 VAMAVAEGLRND---NQD-MEKRL--------YPGGAFDPLGFSKDPKSFEDKKLKELKN 180
Query: 205 G 205
G
Sbjct: 181 G 181
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL+++P+N Y EL+++RWAMLG G ++PE K G
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 120 APQ--WYDAG 127
P+ W+ G
Sbjct: 145 GPEAVWFKTG 154
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL+G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ ++ G+
Sbjct: 32 APSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVK 91
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 92 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRIAGGP 147
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 148 LGEVEDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 189
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 153 DPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVXAIVTGKG 204
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLG 184
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 185 EVVDPL------------YPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 138
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G++ ++ P
Sbjct: 139 GEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPL 194
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 195 GEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNG----RLAMF 235
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG N FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 203 PGGN-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 252
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ K G+
Sbjct: 66 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGVK 125
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + + Y +
Sbjct: 126 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWAS-----QVVLMGLIEGYRVGG 179
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A E+ K KE+ NG +LA F
Sbjct: 180 GPLGEGLDPLYPGGAFDPLGLADDPESFAELKVKEIKNG----RLAMF 223
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE+ E+ N R AM + G + + T G I
Sbjct: 195 FDPLGLADDPESFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALKP--VSSSASFKVEAKGEWLP 55
MA T S++ F A K S L G + R+ A K VSS + + + +L
Sbjct: 1 MAAATMSLSSSTFAGKAVKNVPSLALLGEARVTMRKTAAKAKQVSSGSPWYGADRVLYLG 60
Query: 56 GLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 114 KIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFK 170
+ G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 RNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YR 176
Query: 171 QYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 VAGGPLGEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 223
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 185 IVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 101/221 (45%), Gaps = 39/221 (17%)
Query: 4 VTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYL 63
+T + +AA +P AS S + +R + L P+S S P+YL
Sbjct: 25 ITMRKTAAKPKPAASGSPWYGA-----DRVLYLGPLSGS----------------PPSYL 63
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQ 122
G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 64 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 123
Query: 123 WYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG 180
W+ AG ++ F+ ++ L H I W + G+V ++ P EV
Sbjct: 124 WFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVV 179
Query: 181 ---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 180 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 216
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 178 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 231
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 79/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 138
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y S + ++ + IL +E R P
Sbjct: 139 GEAVWFKAGAQIFSEGWLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVAG--GPLGE 196
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 197 VTDPI------------YPGGNFDPLGLADDPDAFAELKVKELKNG----RLAMF 235
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
PG N FDPLGLA+DP+ EL N R AM + G + + T G
Sbjct: 203 PGGN-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 250
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 64 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 123
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S +++ + IL VE R P
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG--GPLG 181
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP----TDEAKEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A + E K KEL NG +LA F
Sbjct: 182 EIVDPL------------YPGGSFDPLGLAEDPERSAELKVKELKNG----RLAMF 221
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE EL N R AM + G + + T G
Sbjct: 183 IVDPLYPGGS------FDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVT 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W V + Y +
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWA-----AQVVLMGFVEGYRVGG 178
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 GPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|357461189|ref|XP_003600876.1| Chlorophyll a-b binding protein CP29.3 [Medicago truncatula]
gi|355489924|gb|AES71127.1| Chlorophyll a-b binding protein CP29.3 [Medicago truncatula]
Length = 278
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 86/212 (40%), Gaps = 79/212 (37%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW------------------------- 87
W PG P +L+G++ GD GFDPLGLA+ E L++
Sbjct: 60 WFPGAQPPEWLDGTMIGDRGFDPLGLAKPVEYLQFDLDSLDQNLAKNLAGDIIGTRVEST 119
Query: 88 ------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKA 129
+ + E+++ RWAMLG +G L E FT + W DAGK
Sbjct: 120 DVNPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEAFTGVA------WQDAGKV 173
Query: 130 E------YFA-----SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
E YF S STL IE ++ Y+E +R L P +
Sbjct: 174 ELVEGSSYFGFSLPFSISTLIWIEVLVIGYIEFQR-----------------NAELDPEK 216
Query: 179 VGYPGG-IFNPLNFAPTDEAKEK-ELANGNNS 208
YPGG F+PL A E KE+ +LA +S
Sbjct: 217 RLYPGGKFFDPLGLASDPEEKERLQLAEIKHS 248
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAML 101
PG FDPLGLA DPE + AE+ +SR AM+
Sbjct: 220 PGGKFFDPLGLASDPEEKERLQLAEIKHSRLAMV 253
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 37 KPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
KPVSS + + + ++L + P+YL G PGD G+D GL+ DPE + E++
Sbjct: 43 KPVSSGSPWYGTDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 95 NSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR 153
+ RWAMLG +G + PE+ + G+ W+ AG A+ F+ ++ L H I
Sbjct: 103 HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILA 161
Query: 154 -W-QDIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELAN 204
W + G+V ++ P EV YPGG F+PL A EA K KE+ N
Sbjct: 162 IWASQVILMGAVEG---YRIGGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 218
Query: 205 GNNSAKLAYF 214
G +LA F
Sbjct: 219 G----RLAMF 224
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ + +L +VE R
Sbjct: 125 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR-------- 175
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
V P+ + + YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 176 -VGGGPLGEGL-----DAIYPGGAFDPLGLADDPDAFAELKVKEIKNG----RLAMF 222
Score = 36.2 bits (82), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 185 LDAIYPG-GAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 77 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 136
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 137 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 192
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 193 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 233
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 195 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 248
Query: 117 IIN 119
I
Sbjct: 249 PIE 251
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 77 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 136
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 137 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 192
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 193 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 233
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 195 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 248
Query: 117 IIN 119
I
Sbjct: 249 PIE 251
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 44/176 (25%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE K G
Sbjct: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILF--------HYVEIRRWQDIKNPGS 162
P+ W+ D YF +S + +I + Y I D+
Sbjct: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIINGLDL----- 199
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
+D + +PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 200 --EDKL------------HPGGPFDPLGLASDPDQAALLKVKEIKNG----RLAMF 237
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGP 180
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 LGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 187 PLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 28/168 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE K G
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D YF +S + +I ++ G I
Sbjct: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPINLIV---------AVAAEVVLVGGAEYYRIIN 195
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
L + +PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 196 GLDL--EDKLHPGGPFDPLGLASDPDQAALLKVKEIKNG----RLAMF 237
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 104/247 (42%), Gaps = 62/247 (25%)
Query: 2 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG----- 56
ATVT SA V K+RFL G+ AL+ V + + K E G
Sbjct: 3 ATVTAAGSATVL-----KTRFL----GQTRSSSALRDVVAMGNGKFTMSNELWYGPDRVK 53
Query: 57 ------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
+P+YLNG PGD G+D GL+ DPE E+++ RWAMLG +G + PE
Sbjct: 54 YLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPE 113
Query: 111 VFTKIGIIN--APQWYDAGKAEYFA--------------SSSTLFVIEF--ILFHYVEIR 152
V K ++ P W+ AG A+ F+ + S L V+ F +L VE
Sbjct: 114 VLEKWVKVDFKEPVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGF 172
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----DEAKEKELANGNN 207
R + G N YPGG F+PL A E K KE+ NG
Sbjct: 173 RINGLDGVGEGNDL--------------YPGGQYFDPLGLADDPVTFAELKVKEIKNG-- 216
Query: 208 SAKLAYF 214
+LA F
Sbjct: 217 --RLAMF 221
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
N PG FDPLGLA+DP E+ N R AM + G + + T G
Sbjct: 184 NDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFIQAIVTGKG 236
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
W+ AG ++ F+ ++ L H I + V + Y +
Sbjct: 123 FGEAVWFKAG-SQIFSEGGLDYLGNPNLVHAQSILAIWACQ----VVLMGFIEGYRVGGG 177
Query: 178 EVG------YPGGIFNPLNFA----PTDEAKEKELANGNNSAKLAYF 214
+G YPGG F+PL A E K KEL NG +LA F
Sbjct: 178 PLGEGLDKIYPGGAFDPLGLADDPDTAAELKVKELKNG----RLAMF 220
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DP+ EL N R AM + G + + T G
Sbjct: 192 FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 78/175 (44%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + IL VE R P
Sbjct: 132 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGX 189
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 190 VTDPI------------YPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 228
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 190 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 117 IIN 119
I
Sbjct: 244 PIE 246
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 72/169 (42%), Gaps = 22/169 (13%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P YLNG L GD G+DPLGL +D E + Y + EL+++RWAML G+L+PE G I
Sbjct: 69 PAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAMLAAAGILIPEGLQANGANI 128
Query: 119 NAPQWYD-------AGKAEYFASS----------STLFVIEFILFHYVEIRRWQDIKNPG 161
W++ G YFA + IE L VE R G
Sbjct: 129 KGGVWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAIEVGLMGAVEFYRRNGTGPAG 188
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
F + YPGG F+PL A E K KE+ NG
Sbjct: 189 YSPGIGKFDSSVFEGLDSIYPGGPFDPLGLADDPEVFQELKVKEIKNGR 237
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 12/163 (7%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ +PE + E++++RWAMLG VG ++PE+ + G+
Sbjct: 68 TPSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVIHARWAMLGTVGCIVPELLERNGVK 127
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR--WQDIKNPGSVNQDPIFKQYSLP 175
I W+ AG ++ F ++ + L H I + G++ I
Sbjct: 128 IGEAVWFKAG-SQIFRDEGLNYLGDPKLIHAQNILAVLAAQVILMGAIEGYRISGGPLGE 186
Query: 176 PNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P + YPGG F+PL+ A E K KE+ NG +LA F
Sbjct: 187 PTDPLYPGGNFDPLHLADDPEEFAILKVKEIKNG----RLAMF 225
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
PG N FDPL LA+DPE E+ N R AM ++G + + T G
Sbjct: 193 PGGN-FDPLHLADDPEEFAILKVKEIKNGRLAMFAMLGFYVQAIVTGKG 240
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 52 EWLPG--LAS-PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
+WLP LA P YL G PGD G+D LGL+ DP+N Y +AEL+++RWAMLG +G +
Sbjct: 127 KWLPDAFLAGVPDYLTGEYPGDYGWDALGLSADPQNFANYREAELLHARWAMLGALGCVF 186
Query: 109 PEVFTKI--GIINAPQWYDAG 127
PEV G I P W+ AG
Sbjct: 187 PEVINSYYNGNIAEPVWWKAG 207
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 22/221 (9%)
Query: 8 ASAAVFRPCASKSRFLTGSSGKLNREVALKP--VSSSASFKVEAKGEWLPGLAS--PTYL 63
+ A V +P + +R + G R+ A KP +S + + + +L + P+YL
Sbjct: 11 SRALVGKPATTSTRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPFSGEPPSYL 70
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQ 122
G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 71 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 130
Query: 123 WYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG 180
W+ AG ++ F+ ++ L H I W + G+V ++ P EV
Sbjct: 131 WFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVV 186
Query: 181 ---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 187 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 138
Query: 119 NAPQWYDAGKA-------EYFAS------SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
W+ AG +Y S S L ++ + I ++ P
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVT 198
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL +A +A K KEL NG +LA F
Sbjct: 199 DPI------------YPGGNFDPLGWADDPDAFAELKVKELKNG----RLAMF 235
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G++ ++ P
Sbjct: 127 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIEG---YRVAGGP 182
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 183 LGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 224
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 189 PLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 138
Query: 119 NAPQWYDAGKA-------EYFAS------SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
W+ AG +Y S S L ++ + I ++ P
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVT 198
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL +A +A K KEL NG +LA F
Sbjct: 199 DPI------------YPGGNFDPLGWADDPDAFAELKVKELKNG----RLAMF 235
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 79/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P++L G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 75 PSHLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 134
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + IL VE R P
Sbjct: 135 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGE 192
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KEL NG +LA F
Sbjct: 193 ITDPI------------YPGGSFDPLGLADDPDAFAELKVKELKNG----RLAMF 231
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ EL N R AM + G + + T G
Sbjct: 193 ITDPIYPGGS------FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 246
Query: 117 II 118
I
Sbjct: 247 PI 248
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 138
Query: 119 NAPQWYDAGKA-------EYFAS------SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
W+ AG +Y S S L ++ + I ++ P
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVT 198
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL +A +A K KEL NG +LA F
Sbjct: 199 DPI------------YPGGNFDPLGWADDPDAFAELKVKELKNG----RLAMF 235
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 138
Query: 119 NAPQWYDAGKA-------EYFAS------SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
W+ AG +Y S S L ++ + I ++ P
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLIHAQSILAILACQVILMGAIEGYRVAGGPLGEVT 198
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL +A +A K KEL NG +LA F
Sbjct: 199 DPI------------YPGGNFDPLGWADDPDAFAELKVKELKNG----RLAMF 235
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 138
Query: 119 NAPQWYDAGKA-------EYFAS------SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
W+ AG +Y S S L ++ + I ++ P
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVT 198
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL +A +A K KEL NG +LA F
Sbjct: 199 DPI------------YPGGNFDPLGWADDPDAFAELKVKELKNG----RLAMF 235
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 132 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 187
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 188 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 228
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 190 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 117 IIN 119
I
Sbjct: 244 PIE 246
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YLNG GD G+D GL+ DPE + E++++RWAMLG +G + PE+ K G+
Sbjct: 67 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 127 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRVAGGP 182
Query: 176 PNEVG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
EV YPGG F+PL A E K KE+ NG +LA F
Sbjct: 183 LGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 224
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 186 VTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 106/241 (43%), Gaps = 45/241 (18%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALKP--VSSSASFKVEAKGEWLP 55
MA T S++ F A K S L G + R+ A K VSSS+ + + +L
Sbjct: 1 MAATTMSLSSSSFAGKAVKNLPSSALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLG 60
Query: 56 GLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 114 KIGI-INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDI 157
+ G+ W+ AG +Y + S ++ + +L VE R
Sbjct: 121 RNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAG- 179
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAY 213
P DP+ YPGG F+PL A +A K KE+ NG +LA
Sbjct: 180 -GPLGEIVDPL------------YPGGSFDPLGLAERPQAFAELKVKEIKNG----RLAM 222
Query: 214 F 214
F
Sbjct: 223 F 223
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 39/176 (22%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ +K ++
Sbjct: 45 PSYLTGQFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 104
Query: 120 APQ--WYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
+ W+ AG +Y + S + + +L +E R
Sbjct: 105 FGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR--------- 155
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
VN P+ + +V +PG F+PL A E K KE+ NG +LA F
Sbjct: 156 VNGGPLGEGL-----DVLHPGEKFDPLGLADDPDTFAELKVKEIKNG----RLAMF 202
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG+ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 170 PGEK-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPI 219
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 132 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 187
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 188 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 228
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 190 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 117 IIN 119
I
Sbjct: 244 PIE 246
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 107/231 (46%), Gaps = 25/231 (10%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLP 55
MA T S+ F A K S L G + R+ A K PV S + + + +L
Sbjct: 1 MAATTMSLSSPAFAGKAVKNLPSSALFGEARVTMRKTAAKAKPVPSGSPWYGADRVLYLG 60
Query: 56 GLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 PLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 114 KIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFK 170
+ G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 RNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YR 176
Query: 171 QYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 IAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNG----RLAMF 223
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 132 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 187
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 188 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 228
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 190 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 117 IIN 119
I
Sbjct: 244 PIE 246
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DP+ + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 122
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 123 GEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPL 178
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 179 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 219
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 181 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 234
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 125 FGEVVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGP 180
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 222
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 90/200 (45%), Gaps = 40/200 (20%)
Query: 37 KPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
K VSSS+ + + +L L+ P+YL G PGD G+D GL+ DPE + E++
Sbjct: 37 KQVSSSSPWYGSDRVLYLGSLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 96
Query: 95 NSRWAMLGVVGMLLPEVFTKIGI--------INAPQWYDAGKAEYFASSS--------TL 138
+ RWAMLG +G + PE+ + G+ + Q + G +Y + S +
Sbjct: 97 HCRWAMLGALGCVFPELLARNGVKFGEAVWFMAGSQIFSEGGLDYLGNPSLVHAQSILAI 156
Query: 139 FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA- 197
+ + +L VE R P DP+ YPGG F+PL A EA
Sbjct: 157 WACQVVLMGAVEGYRIAG--GPLGEIVDPL------------YPGGSFDPLGLADDPEAF 202
Query: 198 ---KEKELANGNNSAKLAYF 214
K KE+ NG +LA F
Sbjct: 203 AELKVKEIKNG----RLAMF 218
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 180 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 233
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 180
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 183 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 49 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 108
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 109 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGP 164
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 165 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 206
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 168 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 221
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G GD G+D GL+ DPE + E++++RWAMLG +G L PE+ K G+
Sbjct: 67 TPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 127 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGP 182
Query: 176 PNEVG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
EV YPGG F+PL A E K KE+ NG +LA F
Sbjct: 183 LGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 224
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 186 VTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 37 KPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
KPVSS + + + ++L + P+YL G PGD G+D GL+ DPE + E++
Sbjct: 43 KPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 95 NSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR 153
+ RWAMLG +G + PE+ + G+ W+ AG A+ F+ ++ L H I
Sbjct: 103 HCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILA 161
Query: 154 -W-QDIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELAN 204
W + G+V ++ P EV YPGG F+PL A EA K KE+ N
Sbjct: 162 IWATQVLLMGAVEG---YRIAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 218
Query: 205 GNNSAKLAYF 214
G +LA F
Sbjct: 219 G----RLAMF 224
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 189 PLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 132 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 187
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 188 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 228
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 190 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 117 IIN 119
I
Sbjct: 244 PIE 246
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ ++ +L +VE R
Sbjct: 123 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR-------- 173
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
V P+ + ++V YP G F+PL A E K KEL NG +LA F
Sbjct: 174 -VGGGPLGEGL----DKV-YPSGAFDPLGLADDPDTFAELKVKELKNG----RLAMF 220
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 192 FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 22/168 (13%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P YLNG L GD G+DPLGL +D E ++ Y EL+++RWAML G+L+PE G I
Sbjct: 66 PEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWAMLAAAGILIPEGLQANGADI 125
Query: 119 NAPQWYD-------AGKAEYFASS----------STLFVIEFILFHYVEIRRWQDIKNPG 161
W++ G YFA + + +IE +L VE R G
Sbjct: 126 KGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLAAVTLIEIVLLGAVEKFRVDGTGPAG 185
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANG 205
F + YPGG F+PLN A E + KE NG
Sbjct: 186 FSPGVGKFDSDIFDGLDQLYPGGPFDPLNLADDPEVFAELQVKETKNG 233
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 78/176 (44%), Gaps = 40/176 (22%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG ++ FA ++ + +L +VE R P
Sbjct: 126 GEAVWFKAG-SQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A E K KEL NG +LA F
Sbjct: 183 EGLDPL------------YPGGAFDPLGLADDPDSFAELKVKELKNG----RLAMF 222
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DP++ EL N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K G+
Sbjct: 37 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVT 96
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W V + Y +
Sbjct: 97 FGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWAS-----QVVLMGFVEGYRVGG 150
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 151 GPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 194
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 166 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 211
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPN 177
W+ AG A+ F+ ++ L H I W V + + Y +
Sbjct: 126 GEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWAT-----QVVLMGLIEGYRVGGG 179
Query: 178 EVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A +A K KEL NG +LA F
Sbjct: 180 PLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 64 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVK 123
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ G ++ F+ ++ L H I W + G+V ++ P
Sbjct: 124 FGEAVWFKKG-SQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGP 179
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 180 LGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNG----RLAMF 221
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 132 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 187
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 188 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 228
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 190 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 117 IIN 119
I
Sbjct: 244 PIE 246
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 134
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 135 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 190
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 191 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 231
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 193 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 246
Query: 117 II 118
I
Sbjct: 247 PI 248
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 78/168 (46%), Gaps = 36/168 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P Y+NG L GD G+DPLGL ++ Y E+++ RWAMLGVVGML+PE G N
Sbjct: 85 PAYMNGELAGDYGYDPLGLGNK-GGVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTN 143
Query: 120 --APQWYDAGKAEYFASSSTL--------------FVIEFILFHYVEIRRWQDIKNPGSV 163
W+D+G A S+TL + E +F +E R+Q P
Sbjct: 144 IKGAVWWDSG-AVLLDPSATLTWAGIPNPVPLALAVIFEVAVFFLIENYRYQQ-DGPWGT 201
Query: 164 NQDPIFKQYSLPPNEVGYPGG-IFNPLNFA----PTDEAKEKELANGN 206
DP+ YPGG F+PL A DE K KE+ NG
Sbjct: 202 GLDPL------------YPGGKYFDPLGLASDPSKADELKVKEIKNGR 237
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 44 SFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
+++ + G W GL P Y PG FDPLGLA DP E+ N R AM+
Sbjct: 190 NYRYQQDGPWGTGL-DPLY-----PGGKYFDPLGLASDPSKADELKVKEIKNGRLAMMAF 243
Query: 104 VGMLLPEVFTKIG 116
+G ++ TK G
Sbjct: 244 LGFVVQYFVTKEG 256
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 39/176 (22%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ +K ++
Sbjct: 45 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 104
Query: 120 APQ--WYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
+ W+ AG +Y + S + + +L +E R
Sbjct: 105 FGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR--------- 155
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
VN P+ + +V +PG F+PL A E K KE+ NG +LA F
Sbjct: 156 VNGGPLGEGL-----DVLHPGEKFDPLGLADDPDTFAELKVKEIKNG----RLAMF 202
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG+ FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 170 PGEK-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPI 219
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 132 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 187
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 188 GEVTDPIYPGGSFDPLRLADDPDAFAELKVKEIKNG----RLAMF 228
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 78/176 (44%), Gaps = 40/176 (22%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG ++ FA ++ + +L +VE R P
Sbjct: 126 GEAVWFKAG-SQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGG--GPLG 182
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A E K KEL NG +LA F
Sbjct: 183 EGLDPL------------YPGGAFDPLGLADDPDSFAELKVKELKNG----RLAMF 222
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA+DP++ EL N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 95/207 (45%), Gaps = 40/207 (19%)
Query: 30 LNREVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKW 87
+ R V K +S + E + +WL + +P+YL+G PGD G+D GL+ DPE
Sbjct: 5 MRRTVKGKTTPTSMWYG-EDRPKWLGPFSGNTPSYLSGEYPGDYGWDTAGLSADPETFAK 63
Query: 88 YVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFA------------- 133
Y + E++++RWAMLG +G L PE+ K G+ W+ AG A+ FA
Sbjct: 64 YREIEVIHARWAMLGALGCLTPELLAKNGVSFGEAVWWKAG-AQIFAPGGLDYLGNPSLV 122
Query: 134 -SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNF 191
+ S + ++ + I ++ PG D + YPGG F+PL
Sbjct: 123 HAQSIIAILASQVLLMGAIEGYRVYGGPGGEGLDKV------------YPGGDYFDPLGL 170
Query: 192 APT----DEAKEKELANGNNSAKLAYF 214
A E K KE+ NG +LA F
Sbjct: 171 ADDPDTFAELKVKEIKNG----RLAMF 193
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
L+ PG + FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 155 LDKVYPGGDYFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 208
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 132 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 187
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 188 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 228
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 190 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 117 IIN 119
I
Sbjct: 244 PIE 246
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 28/168 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE K G
Sbjct: 24 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 83
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D YF +S + +I ++ G I
Sbjct: 84 GPEAVWFKTGALLLDGNTLNYFGNSIPINLIV---------AVAAEVVLVGGAEYYRIIN 134
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
L + +PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 135 GLDL--EDKLHPGGPFDPLGLASDPDQAALLKVKEIKNG----RLAMF 176
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 100/237 (42%), Gaps = 35/237 (14%)
Query: 2 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLP---GLA 58
A T+ A + + + L ++ RE A + A + + ++LP G
Sbjct: 133 AISKTEFGAGLAKSIEDRRPELEAERARVERERAAARATMPAHYG-PTRRKFLPDGFGYP 191
Query: 59 SPTYLNGSLPGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG- 116
P +L+G+L GD GFDPLGLA P +L Y + EL++ RWAMLGVVG +PE + G
Sbjct: 192 FPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWAMLGVVGAAVPEALARFGG 251
Query: 117 -IINAPQWYDAGKAE----------------YFASSSTLFVI---EFILFHYVEIRRWQD 156
+ P W+ G A+ + A SS L VI + +L E R
Sbjct: 252 LELGEPVWWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVIAACQLVLMGGPEYAR--- 308
Query: 157 IKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEAKEKELANGNNSAKLA 212
V D + P + YPGG F+P + E++ +LA
Sbjct: 309 -----KVGIDSLVPVGVYLPGDRDYPGGAPFDPFGVSADAAVFERQKVAEMKHGRLA 360
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 94/222 (42%), Gaps = 39/222 (17%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKL---NREVALKPVSSSASFKVEAKGEWLPGL 57
M TQ AAV +P +R +T +S + NR L P S S
Sbjct: 1 MQAALTQRLAAV-KPSGRATRQVTRASVEWYGPNRPQFLGPFSGS--------------- 44
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
+P+YL G PGD G+D GL+ DPE Y + E++++RWAMLG +G + PE+ G+
Sbjct: 45 -TPSYLKGEYPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQNNGV 103
Query: 118 IN---------APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 168
+ Q + G +Y + S + + ++ I+ VN P
Sbjct: 104 ASFGEAVWFKAGAQIFQEGGLDYLGNPSLIHAQSIVAVLLTQLTLMGLIEGY-RVNGGPA 162
Query: 169 FKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
+ + YPG F+PL A E K KEL NG
Sbjct: 163 GEGL-----DALYPGEAFDPLGLADDPDTFSELKVKELKNGR 199
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG+ FDPLGLA+DP+ EL N R AM+ + G + + TK G I
Sbjct: 166 LDALYPGE-AFDPLGLADDPDTFSELKVKELKNGRLAMVSMFGFFVQGIVTKKGPI 220
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F ++ L H I W + G+V ++ P
Sbjct: 125 FGEAVWFKAG-SQIFREGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGP 180
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 LGEVVNPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ +P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 184 VVNPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 10 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 69
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 70 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEG---YRIAGGPL 125
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 126 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 166
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 138
Query: 119 NAPQWYDAGKA-------EYFAS------SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 165
W+ AG +Y S S L ++ + I ++ P
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVT 198
Query: 166 DPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL +A +A K KEL NG +LA F
Sbjct: 199 DPI------------YPGGNFDPLGWADDPDAFAELKVKELKNG----RLAMF 235
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 69 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 128
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 129 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG---YRIAGGPL 184
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 185 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 225
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 187 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
Query: 117 IIN 119
I
Sbjct: 241 PIE 243
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 132 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 187
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 188 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 228
Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 190 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 243
Query: 117 IIN 119
I
Sbjct: 244 PIE 246
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 33 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 92
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 93 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGP 148
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 149 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 190
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 152 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 205
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 APSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLG 184
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 185 EVVDPL------------YPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 APSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLG 184
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 185 EVVDPL------------YPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PG+ G+DP GL++ PE+ Y EL+++RWAMLG G ++PE F K G
Sbjct: 88 PEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 147
Query: 120 APQ--WYDAG 127
P+ W+ G
Sbjct: 148 GPEAVWFKTG 157
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 80/168 (47%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + Y +
Sbjct: 123 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAS-----QVVLMGFVEGYRVGG 176
Query: 177 NEVG------YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+G YPGG F+PL A E K KEL N ++LA F
Sbjct: 177 GPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKN----SRLAMF 220
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ EL NSR AM + G + + T G I
Sbjct: 183 LDKVYPG-GAFDPLGLADDPDTFAELKVKELKNSRLAMFSMFGFFVQAIVTGKGPI 237
>gi|62733871|gb|AAX95980.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864187|gb|ABA92339.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 245
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE K G
Sbjct: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 120 APQ--WYDAG 127
P+ W+ G
Sbjct: 145 GPEAVWFKTG 154
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ K G+
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPEILAKNGVK 123
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ + +L +VE R
Sbjct: 124 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-------- 174
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
V P+ + + YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 175 -VGGGPLGEGL-----DAIYPGGAFDPLGLADDPDAFAELKVKEIKNG----RLAMF 221
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 184 LDAIYPG-GAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238
>gi|108864185|gb|ABG22425.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 186
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE K G
Sbjct: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 120 APQ--WYDAG 127
P+ W+ G
Sbjct: 145 GPEAVWFKTG 154
>gi|302856917|ref|XP_002959743.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
gi|300254465|gb|EFJ39192.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
Length = 179
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + P++ +K G+
Sbjct: 53 ATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPKLLSKNGV 112
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEI 151
+ W+ AG A+ F ++ L H I
Sbjct: 113 QFSEALWFKAG-AQIFQEGGLDYLGNLSLVHAQNI 146
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 23 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 82
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 83 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGAVEG---YRVAGGP 138
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 139 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 180
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 142 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 195
>gi|157965831|gb|ABW06952.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 786
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 20/157 (12%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+ W PG +P +L G PGD GFDP+ A +PE+ + +E+ + R AMLGV G L+P
Sbjct: 253 RATWFPGAKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIP 312
Query: 110 EVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
E+ + G+ W+ AG++ A F +F W + G D
Sbjct: 313 ELLGR-GV-----WFQAGESVDAAQLGLYF-----MFLAAPSEYW---RGNGGFGWDQ-- 356
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
K+ N + YPG F+PL +DE K KE+ NG
Sbjct: 357 KEKKAGGNRI-YPG--FDPLKMT-SDETKTKEIKNGR 389
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+ W PG +P +L G PGD GFDP+ A +PE+ + +E+ + R AMLGV G L+P
Sbjct: 615 RATWFPGAKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIP 674
Query: 110 EVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
E+ + G+ W+ AG++ A F +F W + G D
Sbjct: 675 ELLGR-GV-----WFQAGESVDAAQLGLYF-----MFLAAPSEYW---RGNGGFGWDQKE 720
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
K+ N + YPG F+PL +DE K KE+ NG
Sbjct: 721 KKAG---NRI-YPG--FDPLKMT-SDETKTKEIKNGR 750
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 41/64 (64%)
Query: 48 EAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
E + W PG P YL G P D GFDPLGLA+DP + +E+ +SR AMLGVVG L
Sbjct: 68 EKRPVWFPGATPPAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSL 127
Query: 108 LPEV 111
+PE+
Sbjct: 128 IPEL 131
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 41/64 (64%)
Query: 48 EAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
E + W PG P YL G P D GFDPLGLA+DP + +E+ +SR AMLGVVG L
Sbjct: 430 EKRPVWFPGATPPAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSL 489
Query: 108 LPEV 111
+PE+
Sbjct: 490 IPEL 493
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 28/168 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ PE+ Y EL+++RWAMLG G ++PE K G
Sbjct: 3 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 62
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D YF +S + +I ++ G I
Sbjct: 63 GPEAVWFKTGALLLDGNTLNYFGNSIPINLIV---------AVAAEVVLVGGAEYYRIIN 113
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
L + +PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 114 GLDL--EDKLHPGGPFDPLGLASDPDQAALLKVKEIKNG----RLAMF 155
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 91
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 92 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLG 149
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 150 EVVDPL------------YPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 189
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 151 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 204
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 56 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 115
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 116 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 171
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 172 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNG----RLAMF 212
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 174 VTDPIYPGGS------FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 227
Query: 117 IIN 119
I
Sbjct: 228 PIE 230
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 APSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--GPLG 184
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 185 EVVDPL------------YPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 224
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 21/167 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + ++++ RWAMLG +G + PE+ + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEA 186
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 187 EDLL-----YPGGSFDPLGLATDPEAFAELKVKEIKNG----RLAMF 224
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 64 PSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 123
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V + Y +
Sbjct: 124 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV------EGYRIAG 176
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNS 208
+G YPGG F+PL A EA K KE+ NG ++
Sbjct: 177 GPLGKVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRSA 218
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 182 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRSAMFSMFGFFVQAIVTGKG 235
>gi|145078729|tpg|DAA05882.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Euglena gracilis]
Length = 244
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 18/103 (17%)
Query: 31 NREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQ 90
NR++ L P+S A P +L G LPGD GFD LGLA P L+ Y Q
Sbjct: 108 NRKLFLGPLSDGA----------------PEHLKGELPGDYGFDVLGLATQPTRLERYRQ 151
Query: 91 AELVNSRWAMLGVVGMLLPEVFTK-IGI-INAPQWYDAGKAEY 131
E++N RWAMLG+VG ++PE+ + G+ P W+ G +
Sbjct: 152 GEIINGRWAMLGIVGCIVPELLARNYGVPFPEPVWFKTGATVF 194
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 126 GEAVWFKAG-SQIFSDGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPL 181
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 182 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 79/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+Y G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 65 PSYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 124
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + IL VE R P
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 182
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A EA K KEL +G +LA F
Sbjct: 183 VTDPI------------YPGGSFDPLGLADDPEAFAELKVKELKHG----RLAMF 221
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL + R AM + G + + T G
Sbjct: 183 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKHGRLAMFSMFGFFVQAIVTGKG 236
>gi|157965833|gb|ABW06953.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 424
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 50 KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
+ W PG +P +L G PGD GFDP+ A +PE+ + +E+ + R AMLGV G L+P
Sbjct: 253 RATWFPGAKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIP 312
Query: 110 EVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF 169
E+ + G+ W+ AG++ A F +F W + G D
Sbjct: 313 ELLGR-GV-----WFQAGESVDAAQLGLYF-----MFLAAPSEYW---RGNGGFGWDQKE 358
Query: 170 KQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
K+ N + YPG F+PL +DE K KE+ NG
Sbjct: 359 KKAG---NRI-YPG--FDPLKMT-SDETKTKEIKNGR 388
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 41/64 (64%)
Query: 48 EAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGML 107
E + W PG P YL G P D GFDPLGLA+DP + +E+ +SR AMLGVVG L
Sbjct: 68 EKRPVWFPGATPPAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSL 127
Query: 108 LPEV 111
+PE+
Sbjct: 128 IPEL 131
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 39/176 (22%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ K ++
Sbjct: 30 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILAKYAGVS 89
Query: 120 APQ--WYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
+ W+ AG +Y + S + + +L +E R
Sbjct: 90 CGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR--------- 140
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
VN P+ + L P +PG F+PL A E K KE+ NG +LA F
Sbjct: 141 VNGGPLGE--GLDPL---HPGDKFDPLGLADDPDTFAELKVKEIKNG----RLAMF 187
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYD 125
PGD FDPLGLA+DP+ E+ N R AM + G + + T G I W D
Sbjct: 155 PGDK-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIE--NWAD 209
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 77/156 (49%), Gaps = 14/156 (8%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 125 GEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPL 180
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANG 205
EV YPGG F+PL A +A K KE+ NG
Sbjct: 181 GEVTDPLYPGGSFDPLGLADDPKAFAELKVKEIKNG 216
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 109/231 (47%), Gaps = 25/231 (10%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLN---REVALKP--VSSSASFKVEAKGEWLP 55
MA T S++ F A K+ L+ G+ R+ A K VSSS+ + + +L
Sbjct: 1 MAATTMYLSSSTFAGKAVKNVPLSALFGEARVTMRKTAAKAKQVSSSSPWYGADRVLYLG 60
Query: 56 GLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 PLSREPPSYLTGDFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 114 KIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFK 170
+ G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 RNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YR 176
Query: 171 QYSLPPNEVG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
P E+ YPGG F+PL A D K KE+ NG +LA F
Sbjct: 177 VAGGPLGEIVDPLYPGGRFDPLGLAERPQAFDALKVKEIKNG----RLAMF 223
>gi|255571917|ref|XP_002526901.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223533800|gb|EEF35532.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 282
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 78/207 (37%), Gaps = 77/207 (37%)
Query: 47 VEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW------------------- 87
VE + W PG P +L+G++ GD GFDP GL + E L++
Sbjct: 59 VEDRLVWFPGANPPEWLDGTMVGDRGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIG 118
Query: 88 ------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW 123
+ + E+++ RWAMLG +G L E T + W
Sbjct: 119 VRVEPNEVKPTPFQPYSEVFGLQRFRECEVIHGRWAMLGTLGALAVEALTGVA------W 172
Query: 124 YDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 172
DAGK E SS TL IE ++ Y+E +R
Sbjct: 173 QDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVIGYIEFQR-----------------NA 215
Query: 173 SLPPNEVGYPGGIFNPLNFAPTDEAKE 199
L P + YPGG F+PL A E KE
Sbjct: 216 ELDPEKRIYPGGYFDPLGLASDPEKKE 242
>gi|145079840|tpg|DAA05941.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Micromonas sp. CCMP490]
Length = 245
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 19/133 (14%)
Query: 34 VALKPVSSSASFK--VEAKG----------EWLPGLASPTYLNGSLPGDNGFDPLGLAED 81
+ PV+ AS + V+A+G WLPG P YL+G++ GD GFDPL L ++
Sbjct: 4 ICTLPVALRASVRAPVKARGMSVKAAAGPQHWLPGSEPPAYLDGTMAGDYGFDPLRLGQN 63
Query: 82 PENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA-SSSTLFV 140
E L + +AEL+N RWAM G+L + + P++++AG A TL
Sbjct: 64 AETLPYLQEAELMNGRWAMHATAGILFTDA------VGLPKFWEAGDAALGDWDLKTLVA 117
Query: 141 IEFILFHYVEIRR 153
I+ ++ ++E R
Sbjct: 118 IQVVVMGFLEAAR 130
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 14/157 (8%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 134
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 135 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 190
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGN 206
EV YPGG F+PL A +A K KE+ NG
Sbjct: 191 GEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGR 227
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 66 APSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVK 125
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 126 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRIAGGP 181
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 182 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 127 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGP 182
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 183 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 127 GEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPL 182
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 183 GEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 127 GEAVWFKAG-SQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEG---YRIAGGPL 182
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 183 GEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T
Sbjct: 185 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 235
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 34 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 93
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G++ ++ P
Sbjct: 94 GEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPL 149
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 150 GEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNG----RLAMF 190
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
PG N FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 158 PGGN-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 207
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G PE+ + G+
Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCDFPELLARNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGP 180
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSTFGFFVQAIVTGKG 237
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 126 GEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEG---YRVAGGPL 181
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 182 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YLNG GD G+D GL+ DPE + E++++RWAMLG +G + PE+ K G+
Sbjct: 65 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 125 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEG---YRVAGGP 180
Query: 176 PNEVG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+V YPGG F+PL A E K KE+ NG +LA F
Sbjct: 181 LGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L + P Y GS FDPLGLA+DP+ E+ N R AM + G + + T
Sbjct: 181 LGDVTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 114 KIG 116
G
Sbjct: 235 GKG 237
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 107/242 (44%), Gaps = 48/242 (19%)
Query: 1 MATVTTQASAAVFRPCA-SKSRFL--TGSSGKLNREVALKPVSSSASFKV---EAKGEWL 54
MAT Q SA V + S++ F+ GS G+ + ++ SA + E + ++L
Sbjct: 1 MATSAIQQSAFVGQAVGKSQNEFVRKVGSCGE--SRITMRRTVKSAPQSIWYGEDRPKYL 58
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ +P+Y G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 59 GPFSEQTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEIL 118
Query: 113 TKIGI-INAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQD 156
+K G+ W+ AG +Y S ++ + +L +VE R
Sbjct: 119 SKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG 178
Query: 157 IKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLA 212
P D I YPGG F+PL A EA K KE+ NG +LA
Sbjct: 179 --GPLGEGLDKI------------YPGGAFDPLGLADDPEAFAELKVKEIKNG----RLA 220
Query: 213 YF 214
F
Sbjct: 221 MF 222
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 103/238 (43%), Gaps = 52/238 (21%)
Query: 10 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG-----------LA 58
AA R +K+ FL+G G+ L+ ++++ + ++ + G
Sbjct: 7 AAASRAVVAKTPFLSGQ-GRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQ 65
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI 117
+P+YLNG PGD G+D GL+ DPE E+++ RWAMLG +G + PEV K +G+
Sbjct: 66 TPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGV 125
Query: 118 -INAPQWYDAGKA-------EYFA------SSSTLFVIEF--ILFHYVEIRRWQDIKNPG 161
P W+ AG +Y + S L V+ F +L VE R + G
Sbjct: 126 EFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVG 185
Query: 162 SVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
N YPGG F+PL A E K KE+ NG +LA F
Sbjct: 186 EGNDL--------------YPGGQYFDPLGLADDPVTFAELKVKEIKNG----RLAMF 225
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
N PG FDPLGLA+DP E+ N R AM + G + + T G
Sbjct: 188 NDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + +++SRWAMLG +G + PE+ +K G+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + Y +
Sbjct: 123 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAS-----QVVLMGFVEGYRIGG 176
Query: 177 NEVG------YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+G YPGG F+PL A E K KEL NG +LA F
Sbjct: 177 GPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNG----RLAMF 220
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 183 LDKVYPG-GAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YLNG GD G+D GL+ DPE + E++++RWAMLG +G + PE+ K G+
Sbjct: 67 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 127 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEG---YRVAGGP 182
Query: 176 PNEVG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+V YPGG F+PL A E K KE+ NG +LA F
Sbjct: 183 LGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 224
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L + P Y GS FDPLGLA+DP+ E+ N R AM + G + + T
Sbjct: 183 LGDVTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 114 KIG 116
G
Sbjct: 237 GKG 239
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 1 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVA--LKPVSSSASFKVEAKGEWLP 55
MA T S+ F A K S L G + R+ A +K V+S + + + +L
Sbjct: 1 MAATTMSLSSPAFAGKAVKNLPSSSLFGEARVTMRKTAAKVKQVASGSPWYGSDRVLYLG 60
Query: 56 GLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L+ P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 114 KIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFK 170
+ G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 RNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YR 176
Query: 171 QYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 IAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 127 GEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPL 182
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 183 GEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 223
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 185 IVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 127 GEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPL 182
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 183 GEIVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNG----RLAMF 223
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 127 GEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPL 182
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 183 GEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 44/176 (25%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL++ P++ Y EL+++RWAMLG G ++PE K G
Sbjct: 88 PEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 147
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILF--------HYVEIRRWQDIKNPGS 162
P+ W+ D YF +S + +I ++ Y I D+
Sbjct: 148 GPEAVWFKTGALLLDGNTLNYFGNSIPINLILAVVAEVVLVGGAEYYRIINGLDL----- 202
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
+D + +PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 203 --EDKL------------HPGGPFDPLGLASDPDQAALLKVKEIKNG----RLAMF 240
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD +D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 53 TPSYLTGEFPGDYRWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVK 112
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ ++ +L +VE R
Sbjct: 113 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR-------- 163
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
V P+ + ++V YPGG F+PL A E K KEL NG +LA F
Sbjct: 164 -VGGGPLGEGL----DKV-YPGGAFDPLGLADDPDTFAELKVKELKNG----RLAMF 210
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 173 LDKVYPG-GAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 227
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 126 GEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPL 181
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 182 GEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 184 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 33/163 (20%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-- 117
P +L+GSL GD GFDPLGL +D +L + EL+++RWAMLG+VG+ +PE+ + G+
Sbjct: 174 PAHLDGSLCGDAGFDPLGLGKD--DLPRMRELELLHARWAMLGIVGVAVPELLERYGVAD 231
Query: 118 INAPQWYDAGKA--------EYF-------ASSSTLFVI---EFILFHYVEIRRWQDIKN 159
+ P W+ G A +YF A S + +I + +L E R+
Sbjct: 232 LGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAACQVVLMGGPEYARY----- 286
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEAKEKE 201
V D + P + YPGG F+P F +D+A E E
Sbjct: 287 ---VGIDSLEPVGVYLPGDKDYPGGAPFDP--FKISDDADEFE 324
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 108/232 (46%), Gaps = 26/232 (11%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWL 54
MA T S+ F A K S +TG+ R+ K PVSS + + + ++L
Sbjct: 1 MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ +P+YL G PGD G+D L+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIF 169
+ G+ W+ AG ++ F+ ++ L H I W + G+V +
Sbjct: 121 ARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---Y 176
Query: 170 KQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 RVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 224
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 125 GEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPL 180
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 181 GEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 183 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 78/175 (44%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + +L VE R P
Sbjct: 127 GEAVWFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGE 184
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 185 IVDPL------------YPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|145079082|tpg|DAA05897.1| TPA_inf: chloroplast light-harvesting protein CP29 precursor Lhcb4
[Acetabularia acetabulum]
Length = 275
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 83/206 (40%), Gaps = 59/206 (28%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAE---------DPEN------------------- 84
WLP P +L+GSLPGD GFDPLGLA+ D +N
Sbjct: 53 WLPNTTRPVWLDGSLPGDRGFDPLGLAKPTEYLQVELDEQNINMGVNKAGGIIGSYQESA 112
Query: 85 -----------------LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAG 127
L+ + + EL++ RWAML +G ++ E T + W +AG
Sbjct: 113 ELVSSEKRLQPYKEVFGLERFRECELIHGRWAMLACLGCIVAEGATGV------SWVEAG 166
Query: 128 KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFN 187
K E + F + F + V W + G I++ L + YPGGIF+
Sbjct: 167 KVELDGAQYFNFNLPFSITQLV----WIEAILVGGAE---IYRNTELDSVKRCYPGGIFD 219
Query: 188 PLNFAPTDEAKEKELANGN-NSAKLA 212
PL A D + +L A+LA
Sbjct: 220 PLKLASDDSERSFKLKEAEIKHARLA 245
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 21/211 (9%)
Query: 1 MATVTTQASA----AVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLP- 55
MAT T Q SA + +P R + G+ G+++ +K S + + P
Sbjct: 1 MATSTIQQSAFAGQTLLKPQNELVRKVGGNGGRVSMRRTIKSAPESIWYGPDRPKYLGPF 60
Query: 56 GLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKI 115
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ K
Sbjct: 61 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKN 120
Query: 116 GI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQY 172
G+ W+ AG ++ F ++ L H I W + G+V + Y
Sbjct: 121 GVKFGEAVWFKAG-SQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAV------EGY 173
Query: 173 SLPPNEVG------YPGGIFNPLNFAPTDEA 197
+ +G YPGG F+PL A EA
Sbjct: 174 RVGGGPLGEGLDQLYPGGAFDPLGLAEDPEA 204
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 39/178 (21%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A P+YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G + PE+ +K
Sbjct: 24 AVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAG 83
Query: 118 INAPQ--WYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNP 160
++ + W+ AG +Y + S + + +L +E R
Sbjct: 84 VSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR------- 136
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
VN P+ + + +PG F+PL A E K KE+ NG +LA F
Sbjct: 137 --VNGGPLGEGL-----DTLHPGESFDPLGLADDPDTFAELKIKEIKNG----RLAMF 183
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 77/175 (44%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK----- 114
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 115 ---IGIINAPQWYDAGKAEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
+G Q + G +Y + S ++ + +L VE R P
Sbjct: 126 GEAVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGE 183
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL G +LA F
Sbjct: 184 VVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKKG----RLAMF 222
>gi|116783401|gb|ABK22927.1| unknown [Picea sitchensis]
Length = 126
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVV 104
+V EW+PG P +L+GS PGD GFDPL L PENL+ Y ++EL++ RWAML VV
Sbjct: 43 RVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVV 101
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 79/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++S WAMLG +G + PE+ ++ G+
Sbjct: 7 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKF 66
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + +L VE R P
Sbjct: 67 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA--GGPLGE 124
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A EA K KEL NG +LA F
Sbjct: 125 VTDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 163
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 125 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 178
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ ++ G+
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 123
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 124 GEAVWFKAG-AQIFSEGGLDYLGNPGLVHAQSILAIWACQVILMGAVEG---YRIGGGPL 179
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 180 GEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 220
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 184 DPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 78/175 (44%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NAPQWYDAGKAEY------------FASSSTLFVI---EFILFHYVEIRRWQDIKNPGSV 163
W+ AG + F + ++ I + +L VE R P
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSFVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGE 184
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 185 IVDPL------------YPGGSFDPLGLADDPEAFAELKVKEVKNG----RLAMF 223
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 79/178 (44%), Gaps = 39/178 (21%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
A P+YL G PGD G+D GL+ DPE K Y + EL+++R+AMLG +G + PE+ K G
Sbjct: 47 AVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARFAMLGALGCVTPELLAKYGG 106
Query: 118 IN---------APQWYDAGKAEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNP 160
++ Q + G +Y S + + + + +L VE R P
Sbjct: 107 VSFGESVWFRAGAQIFQEGGLDYLGSPALIHAQSIGAIVISQVVLMGLVEGYRVN--GGP 164
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
D + YPG F+PL A E K KE+ NG +LA F
Sbjct: 165 AGEGLDSL------------YPGESFDPLGLADDPDTFAELKIKEIKNG----RLAMF 206
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G GD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 63 TPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + Y +
Sbjct: 123 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAS-----QVVLMGFVEGYRVGG 176
Query: 177 NEVG------YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+G YPGG F+PL A E K KEL NG +LA F
Sbjct: 177 GPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNG----RLAMF 220
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 183 LDKVYPG-GAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 61 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 120
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 121 GEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPL 176
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 GEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 217
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 179 IVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 232
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 78/168 (46%), Gaps = 28/168 (16%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P+YL G PGD G+D GL+ DPE + E+++ RWAMLGV G ++PE K G
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGVAGFIIPEACNKFGANC 122
Query: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
P+ W+ D YF +S + +I ++ V + G I
Sbjct: 123 GPEAVWFKTGALLLDGNTLNYFGNSIPINLILAVIAEVVLV---------GGAEYYRIIN 173
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
L + +PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 174 GLDL--EDKLHPGGPFDPLGLASDPDQAALLKVKEIKNG----RLAMF 215
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 82/174 (47%), Gaps = 29/174 (16%)
Query: 34 VALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAEL 93
VA+ S S K + + W P +P++L G GD GFDP GLA DP+ + AE+
Sbjct: 333 VAMFAGSGRKSQKSDERPLWFPNTLAPSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEV 392
Query: 94 VNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGK-AEYFASSSTLFVIEFILFHYVEIR 152
+ R AML +VG L+P+ K GI WY+A + A +F + +F E+
Sbjct: 393 YHGRLAMLAIVGALVPDYLGK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVF---EVA 443
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
R +K N DP YPG F+PLN TD KE E+ NG
Sbjct: 444 R--GVKE----NSDPT----------TIYPG--FDPLNLT-TDYTKEAEIKNGR 478
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 40 SSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWA 99
S+ S E + W P P +L G PGD GFDPLGL++DP + +E+ + R A
Sbjct: 147 STRGSAPEEERLVWFPNATPPDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLA 206
Query: 100 MLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 159
MLG+VG ++PE+F G W+D SS L + + + +
Sbjct: 207 MLGIVGCIVPELFFSQG-----PWFD-------LSSFNLTRLGLVALQVIAPLEYWRGNR 254
Query: 160 PGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
S N D Q YPG F+PL +E K KE+ NG
Sbjct: 255 GFSWNGDDGPDQ--------SYPG--FDPLRLT-DEETKLKEIKNGR 290
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 70/156 (44%), Gaps = 24/156 (15%)
Query: 51 GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
G W P P +L G P D GFDPL LA DP+ AE+ + R AML +VG ++PE
Sbjct: 535 GLWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPE 594
Query: 111 VFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
+ K W++AG + L I + E R Q G N ++
Sbjct: 595 LLGK------GAWFEAGDS---VDGLKLGFITMAIAAPTEYWRGQ-----GGFN----WQ 636
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
+ L + YPG F+PLN TD + E+ NG
Sbjct: 637 KGDL---DRSYPG--FDPLNLT-TDYTRAAEVKNGR 666
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 70/156 (44%), Gaps = 24/156 (15%)
Query: 51 GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
G W P P +L G P D GFDPL LA DP+ AE+ + R AML +VG ++PE
Sbjct: 909 GLWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPE 968
Query: 111 VFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
+ K W++AG + L I + E R Q G N ++
Sbjct: 969 LLGK------GAWFEAGDS---VDGLKLGFITMAIAAPTEYWRGQ-----GGFN----WQ 1010
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGN 206
+ L + YPG F+PLN TD + E+ NG
Sbjct: 1011 KGDL---DRSYPG--FDPLNLT-TDYTRAAEVKNGR 1040
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
+A +T Q A P A+ S L G +A ++S E + W P + P
Sbjct: 672 VAGLTAQYLATGESPLANLSAHLANPIGA---NIATNLAMFASSGAKEERELWFPNIVPP 728
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
YL G GD GFDP GLA DP + AE+ + R +ML +VG L+PE+
Sbjct: 729 RYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGNGAWF-- 786
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
Q +D FA + V + W D + +++Q
Sbjct: 787 -QIWDKVDFNRFAVVALQVVAPLEYWRGNGGFLWNDEE---TIDQS-------------- 828
Query: 181 YPGGIFNPLNFAPTDEAKEKELANGN 206
YPG F+PLN T+ KE E+ NG
Sbjct: 829 YPG--FDPLNLT-TEYTKEAEIKNGR 851
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YLNG GD G+D GL+ D E + E++++RWAMLG +G L PE+ K G+
Sbjct: 67 TPSYLNGEFAGDYGWDTAGLSSDLETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 127 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGP 182
Query: 176 PNEVG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
EV YPGG F+PL A E K KE+ NG +LA F
Sbjct: 183 LGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 224
Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 186 VTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YLNG +PGD G+DP GL+++P+N Y EL+++RWAMLG G ++PE K G
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 120 APQ--WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
P+ W+ G +TL + + + ++ G I L
Sbjct: 145 GPEAVWFKTGA--LLLEGNTLNYFGNSIPINLAVAVVAEVVLVGGAEYYRIINGLDLEGK 202
Query: 178 EVGYPGGIFNPLNFAPT-DEA---KEKELANGNNSAKLAYF 214
+PGG F+PL A D+A K KE+ NG +LA F
Sbjct: 203 L--HPGGPFDPLGLASDPDQAAPLKVKEIKNG----RLAMF 237
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G GD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 63 TPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + Y +
Sbjct: 123 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAS-----QVVLMGFVEGYRVGG 176
Query: 177 NEVG------YPGGIFNPLNFAPT----DEAKEKELANGN 206
+G YPGG F+PL A E K KEL NG+
Sbjct: 177 GPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGS 216
>gi|413939029|gb|AFW73580.1| hypothetical protein ZEAMMB73_964613 [Zea mays]
Length = 158
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 8/114 (7%)
Query: 100 MLGVVGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 158
M GV G+L ++ G + P W++AG A++ FA+++ LF ++ L + E +R+ D K
Sbjct: 1 MAGVAGILFTDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFK 60
Query: 159 NPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFAPTDE----AKEKELANG 205
NPGS ++ F + +L + GYPGG +FNPL A E K KE+ NG
Sbjct: 61 NPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNG 114
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 74/165 (44%), Gaps = 22/165 (13%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAP 121
LNG+LPGD G+DPLGLA+D E L Y EL+++RWAML G ++PE G +
Sbjct: 71 LNGTLPGDYGYDPLGLAKDAETLSKYQANELLHARWAMLAAAGAIIPEGLAANGADVKGA 130
Query: 122 QWYDAGKAEYFASSSTLFVIEFI-------LFHYV--EIRRWQDIKNPGSVNQDPI---- 168
W++ G A + F + LF V + +N + P
Sbjct: 131 TWFETGAAMLNGGTLNWFAVPIANISNPLPLFVVVAANVALMGAAENYRRTGEGPAGYSP 190
Query: 169 ----FKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANG 205
F + + + YPGG F+PL A E K KE+ NG
Sbjct: 191 GVGKFDESAYDSMDSLYPGGPFDPLGLADDPEVLAELKVKEIKNG 235
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 78/175 (44%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + +L VE R P
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQAVLMGAVEGYRIAG--GPLGE 184
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 185 IVDPL------------YPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ ++ G+
Sbjct: 39 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 98
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 99 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRVAGGPL 154
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+V YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 155 GKVTGPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 195
Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 157 VTGPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 210
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 81/169 (47%), Gaps = 24/169 (14%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K GI
Sbjct: 67 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGIK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F ++ L H I W + G+V + Y +
Sbjct: 127 FGEAVWFKAG-SQIFKEGGLDYLGNPNLVHAQSILAIWASQVILMGAV------EGYRVG 179
Query: 176 PNEVG------YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+G YPGG F+PL A E K KEL NG +LA F
Sbjct: 180 GGPLGEGLDKIYPGGAFDPLGLADDPDTFAELKVKELKNG----RLAMF 224
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DP+ EL N R AM + G + T G I
Sbjct: 196 FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFTQAIVTGKGPI 241
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 25/180 (13%)
Query: 49 AKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGM 106
A+ WL L++ P +L+G LPGD G+DP GL DP L YV+ EL+++RWAMLG +G
Sbjct: 127 ARPLWLGPLSTQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWAMLGALGA 186
Query: 107 LLPEVFTKIGIIN--APQWYDAGKAEYFASSSTLFV------------IEFILFHYVEIR 152
++PE+ G +W++ G A+ ++ + I F V +
Sbjct: 187 VVPELLQLAGSATFLEDRWWNVGYAKLTTGEELAYLGVPGLRVAGGQGVAIIAFCQVLLM 246
Query: 153 RWQDIKNPGSVNQ-DPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKE----KELANGN 206
+ ++ +P+ P + YPGG +F+PL + E E +E+ NG
Sbjct: 247 FGPEYARACGISALEPL---GVFLPGDKNYPGGWLFDPLQLSGDAERYEAMRVREIKNGR 303
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGSIFPELLARNGVKF 126
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 127 GEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPL 182
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 183 GEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 IVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 78 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARNGVKF 137
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 138 GEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGAVEG---YRIAGGPL 193
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
E+ YPG F+PL A EA K KEL NG +LA F
Sbjct: 194 GEITDPLYPGNSFDPLGLADDPEAFAELKVKELKNG----RLAMF 234
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 71 NGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
N FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 204 NSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 249
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 35/169 (20%)
Query: 54 LPGLASPT-YLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
LPG++SP +L G+L GD GFDPL L + PE+L V+ EL+++RWAML VVG+ +PE
Sbjct: 181 LPGISSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAMLAVVGVAVPEAL 240
Query: 113 TKIG------IINAPQWYDAGKAEYFASS-----------------STLFVIEFILFHYV 149
+ G + P W+ G A+ S + + + +L
Sbjct: 241 SIAGALPEGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGVAVIAACQAVLMGGP 300
Query: 150 EIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAPTDEA 197
E R+ I+ + +P+ P + YPGG F+P F +D+A
Sbjct: 301 EYARYVGIR-----SLEPVGVYL---PGDANYPGGAPFDP--FGLSDDA 339
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 32/171 (18%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G LPGD GFD GL +D Y E++++RWAML +G L+PEVF G +
Sbjct: 123 PPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGTFH 182
Query: 120 --APQWYDAGKAE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 160
P W+ G ++ + A S + VI + +L E R+ I+
Sbjct: 183 FAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIE-- 240
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----DEAKEKELANGN 206
++ I+ P ++ YPGG +F+PLN + ++ K KE+ NG
Sbjct: 241 -ALEPLGIYL-----PGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGR 285
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG-- 116
+P+YL G PGD G+D GL+ DPE+ EL++ RWAMLG +G + PE+ K
Sbjct: 64 TPSYLKGEFPGDYGWDTAGLSADPESFARNRALELIHGRWAMLGALGCITPELLQKYSRV 123
Query: 117 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSL 174
+ P W+ AG A+ F+ ++ L H I W + G+V ++ L
Sbjct: 124 TLKEPVWFKAG-AQIFSDGGLDYLGNPNLIHAQSILAVWAVQVVLMGAVEA---YRTNGL 179
Query: 175 PPNEVG---YPGG-IFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P G YPGG F+PL A E K KEL NG +LA F
Sbjct: 180 PGVGEGGDLYPGGKYFDPLGLADDPETLAELKVKELKNG----RLAMF 223
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 26/49 (53%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
PG FDPLGLA+DPE L EL N R AM + G + + T G
Sbjct: 190 PGGKYFDPLGLADDPETLAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|157965819|gb|ABW06946.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 823
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 79/167 (47%), Gaps = 29/167 (17%)
Query: 40 SSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWA 99
+S + E + W P +P++L G GD GFDP GLA DPE + AE+ + R A
Sbjct: 81 ASGRKTQSEDRPLWFPNTLAPSWLTGEYFGDRGFDPAGLAADPETFERMRIAEVYHGRLA 140
Query: 100 MLGVVGMLLPEVFTKIGIINAPQWYDAGK-AEYFASSSTLFVIEFILFHYVEIRRWQDIK 158
ML VVG L+P+ K GI WY+A + A +F + +F E+ R +K
Sbjct: 141 MLAVVGALVPDYLGK-GI-----WYEAAQNAGIGVKEVAIFTAAYGVF---EVAR--GVK 189
Query: 159 NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
N DP YPG F+PLN TD KE E+ NG
Sbjct: 190 E----NSDPT----------TVYPG--FDPLNLT-TDYTKEAEIKNG 219
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 85/205 (41%), Gaps = 26/205 (12%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
+A +T Q A P A+ S L G N L +SS E + W P + P
Sbjct: 414 VAGLTAQYLATGESPLANLSAHLANPIGA-NITTNLAMFASSGV--KEERELWFPNIVPP 470
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
YL G GD GFDP GLA DP + AE+ + R +ML +VG L+PE+
Sbjct: 471 RYLTGEAFGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGNGAWF-- 528
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
Q +D FA + V + W D + +V+Q
Sbjct: 529 -QIWDKVDFNRFAVVALQVVAPLEYWRGNGGFLWNDEE---TVDQS-------------- 570
Query: 181 YPGGIFNPLNFAPTDEAKEKELANG 205
YPG F+PLN T+ KE E+ NG
Sbjct: 571 YPG--FDPLNLT-TEYTKEAEIKNG 592
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 74/168 (44%), Gaps = 25/168 (14%)
Query: 38 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSR 97
PV+ AS G W P P +L G P D GFDPL LA DP+ AE+ + R
Sbjct: 265 PVAMFAS-SGHKDGLWFPDAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGR 323
Query: 98 WAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
AML +VG ++PE+ K W++AG + L I + E R
Sbjct: 324 LAMLCMVGCIVPELLGK------GAWFEAGDS---VDGLKLGFIAMAIAAPTEYWRGH-- 372
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
G N +++ L + YPG F+PLN TD K E+ NG
Sbjct: 373 ---GGFN----WQKGDL---DRSYPG--FDPLNLT-TDYTKAAEVKNG 407
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 74/168 (44%), Gaps = 25/168 (14%)
Query: 38 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSR 97
PV+ AS G W P P +L G P D GFDPL LA DP+ AE+ + R
Sbjct: 639 PVAMFAS-SGHKDGLWFPDAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGR 697
Query: 98 WAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
AML +VG ++PE+ K W++AG + L I + E R
Sbjct: 698 LAMLCMVGCIVPELLGK------GAWFEAGDS---VDGLKLGFIAMAIAAPTEYWRGH-- 746
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
G N +++ L + YPG F+PLN TD K E+ NG
Sbjct: 747 ---GGFN----WQKGDL---DRSYPG--FDPLNLT-TDYTKAAEVKNG 781
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 37 KPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
KPVSS + + + ++L + +P+YL G GD G+D GL+ DPE + E++
Sbjct: 42 KPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVI 101
Query: 95 NSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR 153
++RWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I
Sbjct: 102 HARWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILA 160
Query: 154 -W-QDIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELAN 204
W + G+V ++ P EV YPGG F+PL A EA K KE+ N
Sbjct: 161 IWATQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 217
Query: 205 GNNSAKLAYF 214
G +LA F
Sbjct: 218 G----RLAMF 223
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 32/171 (18%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P +L GS PGD GFD GL +DP + E++++RWAML +G+++PEV K +N
Sbjct: 116 PDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVN 175
Query: 120 APQ--WYDAGKAE--------------YFASSSTLFVI---EFILFHYVEIRRWQDIKNP 160
+ W+ G A+ + + + VI +F+L E R+ I+
Sbjct: 176 FAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGIIVIAICQFLLMVGPEYARYCGIE-- 233
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF----APTDEAKEKELANGN 206
++ I+ P ++ YPGG+ F+PL A +E K KE+ NG
Sbjct: 234 -ALEPLGIYL-----PGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGR 278
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 61 TYLNGSL--PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
YL G + PG FDPLGL++DP + E+ N R AM+ +G + + TK G
Sbjct: 240 IYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKG 297
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 37 KPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
KPVSS + + + ++L + SP+YL G PGD G+D GL+ DPE + E++
Sbjct: 40 KPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99
Query: 95 NSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR 153
+SRWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I
Sbjct: 100 HSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILA 158
Query: 154 -W-QDIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 192
W + G+V ++ P EV YPGG F+PL A
Sbjct: 159 IWATQVILMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLA 199
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 126 GEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPL 181
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGN 206
EV YPGG F+PL A EA K KEL G
Sbjct: 182 GEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGR 218
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL R AML + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKG 237
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 12/163 (7%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G++ G++ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 29 TPSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVK 88
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G V +
Sbjct: 89 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYGVGGGPLGE 147
Query: 176 PNEVGYPGGIFNPLNFA----PTDEAKEKELANGNNSAKLAYF 214
+ YPGG F PL A E K KEL NG +LA F
Sbjct: 148 GLDKVYPGGAFEPLGLADDPDTAAELKVKELKNG----RLAMF 186
>gi|126251|sp|P08976.1|LH18_EUGGR RecName: Full=Light-harvesting complex I LH38 proteins; Contains:
RecName: Full=LH38 protein 1; Contains: RecName:
Full=LH38 protein 2; Contains: RecName: Full=LH38
protein 3; Flags: Precursor
gi|755729|emb|CAA31338.1| unnamed protein product [Euglena gracilis]
Length = 530
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 75/154 (48%), Gaps = 29/154 (18%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
W P +P++LNG GD GFDP GLA DP+ + AE+ + R AML VVG L+P+
Sbjct: 5 WFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL 64
Query: 113 TKIGIINAPQWYDAGK-AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
K GI WY+A + A +F + +F E+ R +K N DP
Sbjct: 65 GK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVF---EVAR--GVKE----NSDPT--- 106
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
YPG F+PLN TD KE E+ NG
Sbjct: 107 -------TIYPG--FDPLNLT-TDYTKEAEIKNG 130
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 86/205 (41%), Gaps = 26/205 (12%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASP 60
+A +T Q A P A+ S L G N L +SS + E + W P + P
Sbjct: 325 VAGLTAQYLATGESPLANLSAHLANPIGA-NITTNLAMFASSGA--KEERELWFPNIVPP 381
Query: 61 TYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
YL G GD GFDP GLA DP + AE+ + R +ML +VG L+PE+
Sbjct: 382 RYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGNGAWF-- 439
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
Q +D FA + V + W D + +V+Q
Sbjct: 440 -QIWDKVDFNRFAVVALQVVAPLEYWRGNGGFLWNDEE---TVDQS-------------- 481
Query: 181 YPGGIFNPLNFAPTDEAKEKELANG 205
YPG F+PLN T+ KE E+ NG
Sbjct: 482 YPG--FDPLNLT-TEYTKEAEIKNG 503
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 38 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSR 97
PV+ AS G W P P L G P D GFDPL LA DP+ AE+ + R
Sbjct: 176 PVAMFAS-SGHKDGLWFPNAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGR 234
Query: 98 WAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
AML VG ++PE+ K W++AG + L I + E R Q
Sbjct: 235 LAMLCTVGCIVPELLGK------GAWFEAGDS---VDGLKLGFITMAIAAPTEYWRGQ-- 283
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANG 205
G N +++ L + YPG F+PLN TD + E+ NG
Sbjct: 284 ---GGFN----WQKGEL---DRSYPG--FDPLNLT-TDYTRAAEVKNG 318
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 103/239 (43%), Gaps = 55/239 (23%)
Query: 10 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG-----------LA 58
AA R A+K+ FL G+ L+ V+++A+ ++ + G
Sbjct: 7 AATSRVVAAKTPFL--GQGRTANASPLRDVAAAANGRITMSNDLWYGPDRVKYLGPFSAQ 64
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P+YL G PGD G+D GL+ DPE E+++ RWAMLG +G + PEV K +
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWLRV 124
Query: 119 N--APQWYDAGKAEYFA--------------SSSTLFVIEF--ILFHYVEIRRWQDIKNP 160
+ P W+ AG A+ F+ + S L V+ F IL VE R +
Sbjct: 125 DFKEPVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLPGV 183
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
G N YPGG F+PL A E K KE+ NG +LA F
Sbjct: 184 GEGNDL--------------YPGGQYFDPLGLADDPVTFAELKVKEIKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
LPG+ N PG FDPLGLA+DP E+ N R AM + G + + T
Sbjct: 180 LPGVGEG---NDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 114 KIG 116
G
Sbjct: 237 GKG 239
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 81/215 (37%), Gaps = 78/215 (36%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW------------------------- 87
W PG +P YL+GSL GD GFDP+GL + E L++
Sbjct: 54 WFPGAVAPEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFEPG 113
Query: 88 ------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKA 129
+ + EL++ RWAML +G L E T + W DAGK
Sbjct: 114 EVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKV 167
Query: 130 EYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
E SS TL IE +L Y+E +R L P +
Sbjct: 168 ELENGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQR-----------------NAELDPEK 210
Query: 179 VGYPGG-IFNPLNFAPTDEAKEKELANGNNSAKLA 212
YPGG F+PL A E KE+ A+LA
Sbjct: 211 RLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLA 245
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG + FDPLGLA DPE + AE+ ++R AM+G +G + T G +N
Sbjct: 214 PGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLN 265
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P YL G L GD G+DPLGL +DPE ++ Y EL+++RWAML GM++PE G I
Sbjct: 84 PAYLTGDLAGDYGYDPLGLGKDPEQVQKYRAFELIHARWAMLAAAGMIIPEGLAANGADI 143
Query: 119 NAPQWYDAG 127
W++ G
Sbjct: 144 KGATWFETG 152
>gi|224034685|gb|ACN36418.1| unknown [Zea mays]
Length = 186
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
P YL G +PGD G+DP GL + PE+ Y EL+++RWAMLG G ++PE K G
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 120 APQ--WYDAG 127
P+ W+ G
Sbjct: 145 GPEAVWFKTG 154
>gi|118489878|gb|ABK96737.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 275
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 81/221 (36%), Gaps = 77/221 (34%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW------------------ 87
+ E + W PG + P +L+G++ GD GFDP L + E L++
Sbjct: 51 QFEERLVWFPGASPPEWLDGTMVGDRGFDPFALGKPAEYLQFDLDSLDQNLAKNLAGDVI 110
Query: 88 -------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQ 122
+ + EL++ RWAMLG +G + E T +
Sbjct: 111 GVRVDATEVKPTPFQPYSEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------ 164
Query: 123 WYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W DAGK E SS TL IE I+ Y+E +R
Sbjct: 165 WQDAGKVELIEGSSYLGQPLPFSLTTLIWIEVIVIGYIEFQR-----------------N 207
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLA 212
L P + YPGG F+PL A E E A+LA
Sbjct: 208 AELDPEKRLYPGGYFDPLGLASDPEKIENLQLAEIKHARLA 248
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 103/239 (43%), Gaps = 55/239 (23%)
Query: 10 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG-----------LA 58
AA R A+K+ FL G+ L+ V+++A+ ++ + G
Sbjct: 7 AATSRVVAAKTPFL--GQGRAANASPLRDVAAAANGRITMSNDLWYGPDRLKYLGPFSAQ 64
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P+YL G PGD G+D GL+ DPE E+++ RWAMLG +G + PEV K +
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRV 124
Query: 119 N--APQWYDAGKAEYFA--------------SSSTLFVIEF--ILFHYVEIRRWQDIKNP 160
+ P W+ AG A+ F+ + S L V+ F IL VE R +
Sbjct: 125 SFKEPVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLPGV 183
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
G N YPGG F+PL A E K KE+ NG +LA F
Sbjct: 184 GEGNDL--------------YPGGQYFDPLGLADDPVTFAELKVKEIKNG----RLAMF 224
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 77/203 (37%), Gaps = 79/203 (38%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYV----------------------- 89
W PG P YL+GSL GD GFDPLGL + P L++ V
Sbjct: 67 WFPGAKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDL 126
Query: 90 ---------------------QAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGK 128
+ EL++ RWAML +G + E FT + W DAGK
Sbjct: 127 STIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTGV------TWQDAGK 180
Query: 129 AE------YFASS-----STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
E YF S + L IE ++ ++E +R L P
Sbjct: 181 VELDQGPSYFGFSLPFTITALVWIEVLVIGFIEFQR-----------------NTELDPE 223
Query: 178 EVGYPGG-IFNPLNFAPTDEAKE 199
+ YPGG F+PL A E KE
Sbjct: 224 KRLYPGGSYFDPLGLAADPERKE 246
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG + FDPLGLA DPE + AE+ ++R AM+ G + T G ++
Sbjct: 228 PGGSYFDPLGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGPLD 279
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 103/239 (43%), Gaps = 55/239 (23%)
Query: 10 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG-----------LA 58
AA R A+K+ FL G+ L+ V+++A+ ++ + G
Sbjct: 7 AATSRVVAAKTPFL--GQGRAANASPLRDVAAAANGRITMSNDLWYGPDRLKYLGPFSAQ 64
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P+YL G PGD G+D GL+ DPE E+++ RWAMLG +G + PEV K +
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRV 124
Query: 119 N--APQWYDAGKAEYFA--------------SSSTLFVIEF--ILFHYVEIRRWQDIKNP 160
+ P W+ AG A+ F+ + S L V+ F IL VE R +
Sbjct: 125 SFKEPVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLPGV 183
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
G N YPGG F+PL A E K KE+ NG +LA F
Sbjct: 184 GEGNDL--------------YPGGQYFDPLGLADDPVTFAELKVKEIKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
LPG+ N PG FDPLGLA+DP E+ N R AM + G + + T
Sbjct: 180 LPGVGEG---NDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 114 KIG 116
G
Sbjct: 237 GKG 239
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 80/177 (45%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G PE+ +K G+
Sbjct: 63 TPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCFFPEILSKNGVN 122
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ ++ +L +VE R
Sbjct: 123 FGEAVWFKAG-AQIFSEGGLDYLGNPALVRPQSILAIWAVQVVLMGFVEGYR-------- 173
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
V P+ + + YPGG F+ L A E K KE NG +LA F
Sbjct: 174 -VGGGPLGEGL-----DKVYPGGAFDHLGLAEDPDTFAEFKVKEFNNG----RLAMF 220
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 77/203 (37%), Gaps = 79/203 (38%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYV----------------------- 89
W PG P YL+GSL GD GFDPLGL + P L++ V
Sbjct: 67 WFPGAKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDL 126
Query: 90 ---------------------QAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGK 128
+ EL++ RWAML +G + E FT + W DAGK
Sbjct: 127 STIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTGV------TWQDAGK 180
Query: 129 AE------YFASS-----STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
E YF S + L IE ++ ++E +R L P
Sbjct: 181 VELDQGPSYFGFSLPFTITALVWIEVLVIGFIEFQR-----------------NTELDPE 223
Query: 178 EVGYPGG-IFNPLNFAPTDEAKE 199
+ YPGG F+PL A E KE
Sbjct: 224 KRLYPGGSYFDPLGLAADPERKE 246
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG + FDPLGLA DPE + AE+ ++R AM+ G + T G ++
Sbjct: 228 PGGSYFDPLGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGPLD 279
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 102/239 (42%), Gaps = 54/239 (22%)
Query: 10 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG-----------LA 58
AA R A+K+ FL N L+ V+++AS ++ + G
Sbjct: 7 AATSRVVAAKTPFLGQGRAAANAS-PLRDVAAAASGRITMGNDLWYGPDRVKYLGPFSAQ 65
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P+YL G PGD G+D GL+ DPE E+++ RWAMLG +G + PEV K +
Sbjct: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRV 125
Query: 119 N--APQWYDAGKAEYFA--------------SSSTLFVIEF--ILFHYVEIRRWQDIKNP 160
+ P W+ AG A+ F+ + S L V+ F IL VE R +
Sbjct: 126 DFKEPVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGV 184
Query: 161 GSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
G N YPGG F+PL A E K KE+ NG +LA F
Sbjct: 185 GEGNNL--------------YPGGQYFDPLGLADDPVTFAELKVKEIKNG----RLAMF 225
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
N PG FDPLGLA+DP E+ N R AM + G + + T G
Sbjct: 188 NNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
>gi|322812534|pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 74/200 (37%), Gaps = 77/200 (38%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW------------------------- 87
W PG +P YL+GSL GD GFDP GL + E L++
Sbjct: 14 WYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESA 73
Query: 88 ------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKA 129
+ + EL++ RWAML +G L E T I W DAGK
Sbjct: 74 DVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGI------TWQDAGKV 127
Query: 130 EYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNE 178
E SS TL IE ++ Y+E +R ++ +
Sbjct: 128 ELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKRL--------------- 172
Query: 179 VGYPGGIFNPLNFAPTDEAK 198
YPGG F+PL A E K
Sbjct: 173 --YPGGTFDPLGLASDPEKK 190
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
FDPLGLA DPE AE+ ++R AM+G +G + T G +N
Sbjct: 178 FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLN 224
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 37 KPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
KPVSS + + + ++L + +P+YL G PGD G+D GL+ DP + E++
Sbjct: 42 KPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVI 101
Query: 95 NSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR 153
+ RW MLG +G + PE+F + G+ W+ AG ++ F ++ L H I
Sbjct: 102 HCRWTMLGALGCVFPELFARNGVKFGEAVWFKAG-SQIFKEGGLDYLGNPSLVHAQSILA 160
Query: 154 -WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELAN 204
W + G+V ++ P EV YPGG F+PL A EA + KE+ N
Sbjct: 161 IWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKN 217
Query: 205 GNNSAKLAYF 214
G +LA F
Sbjct: 218 G----RLAMF 223
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 188 PLYPGGS------FDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 20/168 (11%)
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
+P+YL G PGD G+D ++ DPE + E+++ RWAMLG +G + PE+ K G+
Sbjct: 25 GTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLVKNGV 84
Query: 118 -INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I + V + + Y +
Sbjct: 85 KFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQ----VVLMGLIEGYRVGG 139
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 140 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 183
Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 155 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 200
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G GD G+D GL+ DPE + E++++RWAMLG +G + PE+ + G+
Sbjct: 35 APSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVK 94
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 95 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRVAGGP 150
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 151 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 192
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 154 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 207
>gi|224101127|ref|XP_002312153.1| light-harvesting complex II protein Lhcb8 [Populus trichocarpa]
gi|222851973|gb|EEE89520.1| light-harvesting complex II protein Lhcb8 [Populus trichocarpa]
Length = 275
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 81/221 (36%), Gaps = 77/221 (34%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW------------------ 87
+ E + W PG + P +L+G++ GD GFDP L + E L++
Sbjct: 51 QFEDRLVWFPGASPPEWLDGTMVGDRGFDPFALGKPAEYLQFDLDSLDQNLAKNLAGDVI 110
Query: 88 -------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQ 122
+ + EL++ RWAMLG +G + E T +
Sbjct: 111 GVRVDATEVKPTPFQPYSEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVA------ 164
Query: 123 WYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W DAGK E SS TL IE I+ Y+E +R
Sbjct: 165 WQDAGKVELIEGSSYLGQPLPFSLTTLIWIEVIVVGYIEFQR-----------------N 207
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLA 212
L P + YPGG F+PL A E E A+LA
Sbjct: 208 AELDPEKRLYPGGYFDPLGLASDPEKIENLQLAEIKHARLA 248
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,711,134,823
Number of Sequences: 23463169
Number of extensions: 164728827
Number of successful extensions: 315299
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 311215
Number of HSP's gapped (non-prelim): 3454
length of query: 215
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 79
effective length of database: 9,168,204,383
effective search space: 724288146257
effective search space used: 724288146257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)