BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028008
(215 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P27521|CA4_ARATH Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis
thaliana GN=LHCA4 PE=1 SV=1
Length = 251
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/209 (85%), Positives = 188/209 (89%), Gaps = 4/209 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAK-GEWLPG 56
MATVTT ASA++FRPC SK RFLTGSSG+LNR+++ + SSA SFKVEAK GEWLPG
Sbjct: 1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
LASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIG
Sbjct: 61 LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120
Query: 117 IINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 176
IIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180
Query: 177 NEVGYPGGIFNPLNFAPTDEAKEKELANG 205
EVGYPGGIFNPLNFAPT EAKEKELANG
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANG 209
>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum
GN=lhcA-P4 PE=1 SV=1
Length = 252
Score = 359 bits (922), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 183/217 (84%), Positives = 190/217 (87%), Gaps = 4/217 (1%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAK-GEWLPGL 57
MATVTTQASAA+F PC KSRFL GSSGKLNR VA +PV S SASFKVEAK GEWLPGL
Sbjct: 1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60
Query: 58 ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI 117
ASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGI
Sbjct: 61 ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
IN P+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAG 180
Query: 178 EVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
EVGYPGGIFNPLNFAPT EAKEKE+ANG A LA+
Sbjct: 181 EVGYPGGIFNPLNFAPTLEAKEKEIANG-RLAMLAFL 216
>sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment)
OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1
Length = 231
Score = 240 bits (613), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 121/178 (67%), Positives = 138/178 (77%), Gaps = 4/178 (2%)
Query: 38 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSR 97
P S+ V+AKG WLPGL SP YL+GSL GDNGFDPL LAEDPE+L+W+VQA++VN R
Sbjct: 21 PRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGR 80
Query: 98 WAMLGVVGMLLPEVFTKIGIINAPQWYD-AGKAEYFASSSTLFVIEFILFHYVEIRRWQD 156
WAMLGV GML+PEV TK G++NAP+W GK YFASSST + + YVEIRRWQD
Sbjct: 81 WAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQD 139
Query: 157 IKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214
IKNPGSVNQDPIFK YSLPP+E GYPG +FNPLNFAP E KEKELANG A LA+
Sbjct: 140 IKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAPL-ENKEKELANG-RLAMLAFL 195
>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida
PE=2 SV=1
Length = 270
Score = 193 bits (490), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 123/190 (64%), Gaps = 4/190 (2%)
Query: 17 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGF 73
A+K+ FL G ++++ +A S A V A + W PG P +L+GSLPGD GF
Sbjct: 29 ATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGF 88
Query: 74 DPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFA 133
DPLGL DPE+LKW QAELV+SRWAMLG G+ +PE TKIG++N P WY AG+ EYF
Sbjct: 89 DPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT 148
Query: 134 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFA 192
++TLFVIE +L + E RRW DI PG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 149 DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 208
Query: 193 PTDEAKEKEL 202
AK KEL
Sbjct: 209 SGSPAKIKEL 218
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG P +K E+ N R AML V+G ++T G I+
Sbjct: 197 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 256
Query: 125 DAGKAEYFASSS 136
D G A FA+ S
Sbjct: 257 DPGHATIFAAFS 268
>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum
lycopersicum GN=CAB7 PE=3 SV=1
Length = 270
Score = 191 bits (484), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/189 (49%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 18 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFD 74
+K+ FL G ++++ S+ + V A + W PG P +L+GSLPGD GFD
Sbjct: 30 TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFD 89
Query: 75 PLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFAS 134
PLGLA DPE+L+W QAELV+ RWAMLG G+ +PE+ TKIGI+N P WY AG+ EYF
Sbjct: 90 PLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTD 149
Query: 135 SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAP 193
++TLF++E +L + E RRW DI PG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 150 TTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 209
Query: 194 TDEAKEKEL 202
AK KEL
Sbjct: 210 GSPAKIKEL 218
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 68 PGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA--PQWY 124
PG FDPLG P +K E+ N R AML V+G ++T G I+
Sbjct: 197 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 256
Query: 125 DAGKAEYFASSS 136
D G A FA+ S
Sbjct: 257 DPGHATIFAAFS 268
>sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum
lycopersicum GN=CAB8 PE=3 SV=1
Length = 273
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 106/212 (50%), Gaps = 40/212 (18%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------ 85
R + PV A+ ++ W S +YL+G LPGD GFDPLGL+ DPE
Sbjct: 40 RAASTPPVKQGANRQL-----WFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEP 93
Query: 86 KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSS 136
KW E++N R+AMLG G + PE+ K G+I A W+ AG Y+A +
Sbjct: 94 KWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNY 153
Query: 137 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNP 188
TLFV+E L + E RR+QD PGS+ KQY L + YPGG +FNP
Sbjct: 154 TLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGLGGSGDPAYPGGPLFNP 208
Query: 189 LNFAPTD----EAKEKELANGNNS--AKLAYF 214
L F + E K KE+ NG + A L YF
Sbjct: 209 LGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240
Score = 37.4 bits (85), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 LPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
L G P Y G L F+PLG +D +++K E+ N R AML ++G + + T
Sbjct: 192 LGGSGDPAYPGGPL-----FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVT 246
Query: 114 KIG 116
+G
Sbjct: 247 GVG 249
>sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum
GN=lhca3 PE=1 SV=1
Length = 275
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 98/191 (51%), Gaps = 35/191 (18%)
Query: 53 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGM 106
W S +YL+GSLPGD GFDPLGL+ DPE +W E++N R+AMLG VG
Sbjct: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGA 116
Query: 107 LLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157
+ PE K+G+I A W+ AG Y+A + TLFV+E L + E RR+QD
Sbjct: 117 IAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDW 176
Query: 158 KNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTD----EAKEKELANG 205
PGS+ KQY L YPGG FNPL F + E K KE+ NG
Sbjct: 177 AKPGSMG-----KQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNG 231
Query: 206 NNS--AKLAYF 214
+ A L YF
Sbjct: 232 RLAMLAILGYF 242
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
N + PG F+PLG +D ++LK E+ N R AML ++G + + T +G
Sbjct: 199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 251
>sp|Q01667|CAB6_ARATH Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis
thaliana GN=LHCA1 PE=1 SV=1
Length = 241
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 91/173 (52%), Gaps = 29/173 (16%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVG 105
++ W+PG P YL+GS PGD GFDPLGL E P NL+ Y ++EL++ RWAML V G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 106 MLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIRRWQDI 157
+L+PE + A +W G+A Y + T+ IEF+ +VE +R
Sbjct: 101 ILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR---- 156
Query: 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGN 206
S+ +DP K+Y PGG F+PL ++ +E K KE+ NG
Sbjct: 157 ----SMEKDPEKKKY---------PGGAFDPLGYSKDPKKLEELKVKEIKNGR 196
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
FDPLG ++DP+ L+ E+ N R A+L VG +
Sbjct: 172 FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCV 207
>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum
vulgare GN=LHC Ib-21 PE=1 SV=1
Length = 245
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 29/178 (16%)
Query: 41 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 100
++ S +V EW PG P +L+GS PGD GFDPLGLA PEN + + ++E+ + RWAM
Sbjct: 36 ATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAM 95
Query: 101 LGVVGMLLPEVFTKIGIINAPQW--YDAGKAEYFASS------STLFVIEFILFHYVEIR 152
L V G+L+PE + A +W G+A Y + T+ IEF+ + E +
Sbjct: 96 LCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQ 155
Query: 153 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGN 206
R ++ +DP K+ YPGG F+PL F A +E K KE+ NG
Sbjct: 156 R--------TMEKDPEKKK---------YPGGAFDPLGFSKDPAKFEELKLKEIKNGR 196
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
FDPLG ++DP + E+ N R AML VG +
Sbjct: 172 FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCV 207
>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum
lycopersicum GN=CAB6A PE=2 SV=1
Length = 246
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 105/213 (49%), Gaps = 32/213 (15%)
Query: 6 TQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNG 65
T S + C S FL+ + K + + +++ + +W+PG P+YL+G
Sbjct: 5 TLMSCGIPAVCPS---FLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDG 61
Query: 66 SLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW-- 123
S PGD GFD LGL E P NL+ Y ++EL++ RWAML V G+++PE + A +W
Sbjct: 62 SAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAA 121
Query: 124 YDAGKAEYF------ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 177
G+A Y + T+ IEF+ +VE +R S+ +D K+
Sbjct: 122 IPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKDSEKKK------ 167
Query: 178 EVGYPGGIFNPLNF----APTDEAKEKELANGN 206
YPGG F+PL + A +E K KE+ NG
Sbjct: 168 ---YPGGAFDPLGYSKDPAKFEELKVKEIKNGR 197
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLL 108
FDPLG ++DP + E+ N R A+L +VG +
Sbjct: 173 FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCV 208
>sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum
lycopersicum GN=CAP10A PE=3 SV=1
Length = 256
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 22/162 (13%)
Query: 49 AKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLG 102
AK W+P L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM
Sbjct: 51 AKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAA 110
Query: 103 VVGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKN 159
V+G+ + + ++ I W++AG A S TL + IL +VE +RW D +
Sbjct: 111 VLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFD 164
Query: 160 PGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
P S + + + ++ E GYPGG F+PL A T
Sbjct: 165 PDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGT 206
>sp|P27525|CB4B_SOLLC Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum
lycopersicum GN=CAP10B PE=3 SV=1
Length = 256
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 109/215 (50%), Gaps = 33/215 (15%)
Query: 4 VTTQASAAVFRPCASKSRFLTG---SSGKLNREVALKPVSSSASFKVEA-----KGEWLP 55
+TT ++ AV +S FLTG + L V + V++ F V A K W+P
Sbjct: 1 MTTTSATAVLNGLSSS--FLTGGKKTQALLGAHVTAR-VTTPKRFVVAAAAVAPKKSWIP 57
Query: 56 G------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ +
Sbjct: 58 AVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVG 117
Query: 110 EVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD 166
+ ++ I W++AG A S +L + +L +VE +RW D + S + D
Sbjct: 118 QAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSID 171
Query: 167 ------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
+ ++ E GYPGG F+PL A T
Sbjct: 172 WATPWSKTAENFANFTGEQGYPGGKFFDPLALAGT 206
>sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia
oleracea PE=2 SV=1
Length = 261
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 22/161 (13%)
Query: 50 KGEWLPGLA------SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAML V
Sbjct: 57 KKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAV 116
Query: 104 VGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
+G+ + + +T I W++AG A S TL + +L +VE +RW D +P
Sbjct: 117 LGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDP 170
Query: 161 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT 194
S + + + +S E GYPGG F+PL+ A T
Sbjct: 171 DSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGT 211
>sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana
tabacum GN=CAB21 PE=2 SV=1
Length = 265
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 40/214 (18%)
Query: 23 LTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAE 80
+TG+ R+ KPV+SS+ + + ++L + SP+YL G PGD G+D GL+
Sbjct: 27 ITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSA 86
Query: 81 DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYF 132
DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG +Y
Sbjct: 87 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 146
Query: 133 ASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG 184
+ S ++ + IL VE R P DP+ YPGG
Sbjct: 147 GNPSLVHAQSILAIWACQVILMGAVEGYRVAG--GPLGEVVDPL------------YPGG 192
Query: 185 IFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
F+PL A EA K KE+ NG +LA F
Sbjct: 193 SFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 222
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 184 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum
lycopersicum GN=CAB3C PE=3 SV=1
Length = 267
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 111/232 (47%), Gaps = 26/232 (11%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWL 54
MAT T S++ F A K S +TG+ R+ A K P SS + + + ++L
Sbjct: 1 MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIF 169
+ G+ W+ AG ++ F+ ++ L H I W + G+V +
Sbjct: 121 ARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---Y 176
Query: 170 KQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 RIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 224
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>sp|P12469|CB23_NICPL Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana
plumbaginifolia GN=CABC PE=3 SV=1
Length = 267
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 110/231 (47%), Gaps = 24/231 (10%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVA--LKPVSSSASFKVEAKGEWL 54
MA T S++ F A K S +TG+ R+ A KPVSSS+ + + ++L
Sbjct: 1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFK 170
+ G+ + G ++ F+ ++ L H I W + G+V ++
Sbjct: 121 ARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YR 177
Query: 171 QYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 178 VAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 224
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 51 GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
GE L + P Y GS FDPLGLAEDPE E+ N R AM + G +
Sbjct: 180 GEPLGEVVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233
Query: 111 VFTKIG 116
+ T G
Sbjct: 234 IVTGKG 239
>sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa
subsp. japonica GN=CAB1R PE=2 SV=2
Length = 265
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 106/240 (44%), Gaps = 44/240 (18%)
Query: 1 MATVTTQASAAVF-RPCASKSRFLTGSSGKLNREVALKP---VSSSASFKVEAKGEWLPG 56
MA T S+ V R S S L G + R+ A KP SS + + + +L
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGP 60
Query: 57 LAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
L+ P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 115 IGI-INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIK 158
G+ W+ AG +Y + S ++ ++ +L VE R
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG-- 178
Query: 159 NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P DP+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 GPLGEVVDPL------------YPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
>sp|P04780|CB22_PETSP Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp.
GN=CAB22L PE=3 SV=1
Length = 267
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 107/242 (44%), Gaps = 46/242 (19%)
Query: 1 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWL 54
MA T S++ F K S +TG+ R+ A K PVSS + + + ++L
Sbjct: 1 MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ +P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+F
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELF 120
Query: 113 TKIGII--------NAPQWYDAGKAEYFASSS--------TLFVIEFILFHYVEIRRWQD 156
+ G+ Q + G +Y + S ++ + +L VE R
Sbjct: 121 ARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAG 180
Query: 157 IKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLA 212
P V DP+ YPGG F+PL A EA K KE NG +LA
Sbjct: 181 --GPLGVVVDPL------------YPGGSFDPLGLAEDPEAFAELKVKETKNG----RLA 222
Query: 213 YF 214
F
Sbjct: 223 MF 224
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKG 239
>sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member F3, chloroplastic
OS=Polystichum munitum GN=CABF3 PE=3 SV=1
Length = 265
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 81/175 (46%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL+G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+
Sbjct: 66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKF 125
Query: 119 NAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y + S ++ + IL VE R P
Sbjct: 126 GEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--GPLGE 183
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+DPI YPGG F+PL A EA K KEL NG +LA F
Sbjct: 184 VEDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 222
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
P Y GS FDPLGLA+DPE EL N R AM + G + + T G I
Sbjct: 187 PIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>sp|Q8VZ87|CB1B_ARATH Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis
thaliana GN=LHCB1.2 PE=1 SV=2
Length = 267
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 21/168 (12%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 125
Query: 118 INAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 126 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 186 AEDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DPE EL N R AM + G + + T G I
Sbjct: 196 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 241
>sp|P0CJ48|CB1A_ARATH Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis
thaliana GN=LHCB1.1 PE=1 SV=1
Length = 267
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 21/168 (12%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 125
Query: 118 INAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 126 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 186 AEDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DPE EL N R AM + G + + T G I
Sbjct: 196 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 241
>sp|P04778|CB1C_ARATH Chlorophyll a-b binding protein 1, chloroplastic OS=Arabidopsis
thaliana GN=LHCB1.3 PE=1 SV=1
Length = 267
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 21/168 (12%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 125
Query: 118 INAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
W+ AG +Y + S + + ++ ++ P+ +
Sbjct: 126 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 171 QYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KEL NG +LA F
Sbjct: 186 AEDLL-----YPGGSFDPLGLATDPEAFAELKVKELKNG----RLAMF 224
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA DPE EL N R AM + G + + T G I
Sbjct: 196 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 241
>sp|P04781|CB23_PETSP Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp.
GN=CAB22R PE=3 SV=1
Length = 267
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 110/232 (47%), Gaps = 26/232 (11%)
Query: 1 MATVTTQASAAVFRPCA----SKSRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWL 54
MA T S++ F A S S +TG+ R+ K P SSS+ + + ++L
Sbjct: 1 MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYL 60
Query: 55 PGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF 112
+ +P+YL G P D G+D GL+ DPE + E+++ RWAMLG +G + PE+F
Sbjct: 61 GPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELF 120
Query: 113 TKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIF 169
+ GI W+ AG A+ F+ ++ L H I W + G+V +
Sbjct: 121 ARNGIKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---Y 176
Query: 170 KQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 RVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 224
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 189 PLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum
GN=CAB8 PE=1 SV=1
Length = 268
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 81/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 68 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 127
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 128 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLG 185
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 186 EVVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 225
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 187 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
>sp|P04782|CB24_PETSP Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp.
GN=CAB25 PE=3 SV=1
Length = 266
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 110/231 (47%), Gaps = 25/231 (10%)
Query: 1 MATVTTQASAAVFRPCAS---KSRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLP 55
MA T S++ F A S +TG+ R+ K PVSS + + + ++L
Sbjct: 1 MAAATMAISSSSFAGKAVNVPSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLG 60
Query: 56 GLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFT 113
+ +P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+F
Sbjct: 61 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFA 120
Query: 114 KIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFK 170
+ G+ W+ AG ++ F+ ++ L H I W + G+V ++
Sbjct: 121 RNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YR 176
Query: 171 QYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 177 VAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 223
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 188 PLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII type I, chloroplastic
(Fragment) OS=Cucumis sativus PE=2 SV=1
Length = 255
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 94/205 (45%), Gaps = 40/205 (19%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
R+ A K VSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 26 RKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 85
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS----- 136
+ E+++SRWAMLG +G + PE+ ++ G+ W+ AG +Y + S
Sbjct: 86 ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 145
Query: 137 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP 193
++ + +L VE R P DPI YPGG F+PL A
Sbjct: 146 SILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPI------------YPGGSFDPLGLAD 191
Query: 194 TDEA----KEKELANGNNSAKLAYF 214
EA K KEL NG +LA F
Sbjct: 192 DPEAFAELKVKELKNG----RLAMF 212
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 174 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 227
>sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana
plumbaginifolia GN=CABE PE=3 SV=1
Length = 266
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 114/235 (48%), Gaps = 33/235 (14%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKL--NREVAL-------KPVSSSASFKVEAKG 51
MA TT S+ P A K+ L+ SS ++ N +V + KPVSS + + +
Sbjct: 1 MAASTTALSS----PFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRV 56
Query: 52 EWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
++L + SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + P
Sbjct: 57 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 116
Query: 110 EVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQD 166
E+ + G+ W+ AG ++ F+ ++ L H I W + G+V
Sbjct: 117 ELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG- 174
Query: 167 PIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
++ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 175 --YRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 223
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 51 GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE 110
GE L + P Y GS FDPLGLAEDPE E+ N R AM + G +
Sbjct: 179 GEPLGEVVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 111 VFTKIG 116
+ T G
Sbjct: 233 LVTGKG 238
>sp|P12471|CB21_SOYBN Chlorophyll a-b binding protein, chloroplastic (Fragment)
OS=Glycine max PE=2 SV=1
Length = 245
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 93/205 (45%), Gaps = 40/205 (19%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
R+ A K VSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 16 RKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 75
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS----- 136
+ E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S
Sbjct: 76 ELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQ 135
Query: 137 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP 193
++ + IL VE R P DPI YPGG F+PL A
Sbjct: 136 SILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGSFDPLALAD 181
Query: 194 TDEA----KEKELANGNNSAKLAYF 214
EA K KE+ NG +LA F
Sbjct: 182 DPEAFAELKVKEIKNG----RLAMF 202
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPL LA+DPE E+ N R AM + G + + T G
Sbjct: 164 VTDPIYPGGS------FDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 217
>sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana
tabacum GN=CAB16 PE=2 SV=1
Length = 266
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 114/235 (48%), Gaps = 33/235 (14%)
Query: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKL--NREVAL-------KPVSSSASFKVEAKG 51
MA TT S+ P A K+ L+ SS ++ N +V + KPVSS + + +
Sbjct: 1 MAASTTALSS----PFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRV 56
Query: 52 EWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLP 109
++L + SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + P
Sbjct: 57 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 116
Query: 110 EVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQD 166
E+ + G+ W+ AG ++ F+ ++ L H I W + G+V
Sbjct: 117 ELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG- 174
Query: 167 PIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
++ P EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 175 --YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 223
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 185 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 member 1B, chloroplastic
OS=Pinus sylvestris PE=2 SV=1
Length = 274
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPEN + E+++ RWAMLG +G + PE+ + G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 134
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 135 GEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPL 190
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 191 GEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 231
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 193 VTDPIYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 246
Query: 117 II 118
I
Sbjct: 247 PI 248
>sp|P14273|CB2_CHLRE Chlorophyll a-b binding protein of LHCII type I, chloroplastic
OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1
Length = 253
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 81/190 (42%), Gaps = 37/190 (19%)
Query: 40 SSSASFKVEAKGEWLPGL---ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNS 96
SS F + +WL A+P YL G PGD G+D GL+ DPE K Y + EL+++
Sbjct: 31 SSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 90
Query: 97 RWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSSTLF--------V 140
RWAMLG +G PE+ K G W+ AG +Y + S +
Sbjct: 91 RWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSA 150
Query: 141 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DE 196
++ IL +E R P DP+ YPG F+PL A E
Sbjct: 151 VQVILMGLIEGYRVNG--GPAGEGLDPL------------YPGESFDPLGLADDPDTFAE 196
Query: 197 AKEKELANGN 206
K KE+ NG
Sbjct: 197 LKVKEIKNGR 206
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119
PG++ FDPLGLA+DP+ E+ N R A + G + + T G +
Sbjct: 178 PGES-FDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQ 228
>sp|P07371|CB22_PEA Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum
sativum GN=AB80 PE=1 SV=1
Length = 269
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 81/176 (46%), Gaps = 38/176 (21%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 69 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 128
Query: 118 INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 162
W+ AG +Y + S ++ + IL VE R P
Sbjct: 129 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLG 186
Query: 163 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DP+ YPGG F+PL A EA K KEL NG +LA F
Sbjct: 187 EVVDPL------------YPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 226
Score = 38.1 bits (87), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 188 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 241
>sp|P09756|CB23_SOYBN Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max
GN=CAB3 PE=3 SV=1
Length = 263
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 93/205 (45%), Gaps = 40/205 (19%)
Query: 32 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYV 89
R+ K VSS + + + ++L + P+YL G PGD G+D GL+ DPE
Sbjct: 34 RKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR 93
Query: 90 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS----- 136
+ E+++SRWAMLG +G + PE+ ++ G+ W+ AG +Y + S
Sbjct: 94 ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 153
Query: 137 ---TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP 193
++ + IL VE R P DPI YPGG F+PL A
Sbjct: 154 SILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGSFDPLGLAD 199
Query: 194 TDEA----KEKELANGNNSAKLAYF 214
EA K KEL NG +LA F
Sbjct: 200 DPEAFAELKVKELKNG----RLAMF 220
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 182 VTDPIYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
>sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII type I, chloroplastic
OS=Lemna gibba PE=3 SV=1
Length = 264
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 82/168 (48%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQ 123
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG A+ F+ ++ L H I W V + + Y +
Sbjct: 124 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAT-----QVVLMGLIEGYRVGG 177
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 178 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 221
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 193 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238
>sp|Q10HD0|CB23_ORYSJ Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa
subsp. japonica GN=RCABP89 PE=2 SV=1
Length = 263
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ ++ +L +VE R
Sbjct: 123 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR-------- 173
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
V P+ + ++V YPGG F+PL A E K KEL NG +LA F
Sbjct: 174 -VGGGPLGEGL----DKV-YPGGAFDPLGLADDPDTFAELKVKELKNG----RLAMF 220
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 183 LDKVYPG-GAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>sp|A2XJ35|CB23_ORYSI Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa
subsp. indica GN=OsI_012078 PE=2 SV=1
Length = 263
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 40/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
W+ AG A+ F+ ++ ++ +L +VE R
Sbjct: 123 FGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR-------- 173
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
V P+ + ++V YPGG F+PL A E K KEL NG +LA F
Sbjct: 174 -VGGGPLGEGL----DKV-YPGGAFDPLGLADDPDTFAELKVKELKNG----RLAMF 220
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
L+ PG FDPLGLA+DP+ EL N R AM + G + + T G I
Sbjct: 183 LDKVYPG-GAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>sp|P04159|CB21_PEA Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum
GN=AB96 PE=1 SV=1
Length = 228
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 28 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 87
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 88 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRIAGGP 143
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 144 LGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNG----RLAMF 185
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAE PE EL N R AM + G +P + T G
Sbjct: 147 VVDPLYPGGS------FDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKG 200
>sp|P22686|CB2_CHLMO Chlorophyll a-b binding protein of LHCII type I, chloroplastic
OS=Chlamydomonas moewusii PE=2 SV=1
Length = 256
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 39/177 (22%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF-TKIGI 117
+P YL G PGD G+D GL+ DPE K Y + E++++RWA+LG +G+L PE+ T G+
Sbjct: 55 TPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGV 114
Query: 118 -INAPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPG 161
P W+ AG +Y S + + ++ +L +E R P
Sbjct: 115 KFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNG--GPA 172
Query: 162 SVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
DP+ YPG F+PL A E K KE+ NG +LA F
Sbjct: 173 GEGLDPL------------YPGESFDPLGLADDPDTFAELKVKEIKNG----RLAMF 213
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 68 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN--APQWYD 125
PG++ FDPLGLA+DP+ E+ N R AM G + + T G I A D
Sbjct: 181 PGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLAD 239
Query: 126 AGKAEYFASSS 136
G FA+++
Sbjct: 240 PGTNNAFAAAT 250
>sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella
patens subsp. patens PE=3 SV=1
Length = 269
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YLNG GD G+D GL+ DPE + E++++RWAMLG +G L PE+ K G+
Sbjct: 68 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 127
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG A+ F+ ++ L H I W + G+V ++ P
Sbjct: 128 FGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGP 183
Query: 176 PNEVG---YPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
EV YPGG F+PL A E K KE+ NG +LA F
Sbjct: 184 LGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNG----RLAMF 225
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DP+ E+ N R AM + G + + T G
Sbjct: 187 VTDPIYPGGS------FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
>sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana
tabacum GN=CAB36 PE=3 SV=1
Length = 265
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 22/168 (13%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVK 124
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W V + + Y +
Sbjct: 125 FGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAVWAS-----QVVLMGLIEGYRVGG 178
Query: 177 NEVG------YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+G YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 GPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=CAB2R PE=2 SV=2
Length = 261
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 99/231 (42%), Gaps = 59/231 (25%)
Query: 4 VTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYL 63
+T + SAA +P AS S + +R + L P+S P+YL
Sbjct: 27 ITMRKSAAKPKPAASGSPWYGA-----DRVLYLGPLSGE----------------PPSYL 65
Query: 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQ 122
G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV 125
Query: 123 WYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 167
W+ AG +Y + S ++ ++ +L VE R P DP
Sbjct: 126 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGEVVDP 183
Query: 168 IFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
+ YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 184 L------------YPGGSFDPLGLADDPEAFAELKVKEIKNG----RLAMF 218
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 180 VVDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 233
>sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium
hirsutum GN=CAB-151 PE=2 SV=2
Length = 265
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 38/175 (21%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125
Query: 119 NAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGSV 163
W+ AG +Y S ++ + +L +VE R P
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGE 183
Query: 164 NQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
DPI YPGG F+PL A +A K KE+ NG +LA F
Sbjct: 184 GLDPI------------YPGGAFDPLGLADDPDAFAELKVKEIKNG----RLAMF 222
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DP+ E+ N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>sp|P12329|CB21_MAIZE Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays
GN=CAB1 PE=3 SV=1
Length = 262
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 122
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 123 GEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPL 178
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 179 GEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG----RLAMF 219
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 181 VVDPLYPGGS------FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 234
>sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays
GN=CAB-M9 PE=2 SV=1
Length = 265
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPP 176
W+ AG ++ F+ ++ L H I W + G++ ++ P
Sbjct: 126 GEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEG---YRVAGGPL 181
Query: 177 NEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KEL NG +LA F
Sbjct: 182 GEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNG----RLAMF 222
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DPE EL N R AM + G + + T G
Sbjct: 194 FDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
>sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana
tabacum GN=CAB7 PE=3 SV=1
Length = 267
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 22/206 (10%)
Query: 23 LTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGL 78
+TG+ + R+ K PVSS + + + ++L + +P+YL G PGD G+D GL
Sbjct: 27 ITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGL 86
Query: 79 AEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSST 137
+ DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG ++ F+
Sbjct: 87 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGL 145
Query: 138 LFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 192
++ L H I W + G++ ++ P EV YPGG F+PL A
Sbjct: 146 DYLGNPSLVHAQSILAIWACQVVLMGAIEG---YRVAGGPLGEVTDPLYPGGSFDPLGLA 202
Query: 193 PTDEA----KEKELANGNNSAKLAYF 214
EA K KE+ NG +LA F
Sbjct: 203 DDPEAFAELKVKEIKNG----RLAMF 224
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLA+DPE E+ N R AM + G + + T G
Sbjct: 186 VTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 117 IIN 119
++
Sbjct: 240 PLD 242
>sp|Q93WD2|CB29_CHLRE Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii
GN=Lhcb4 PE=1 SV=3
Length = 280
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 77/198 (38%), Gaps = 58/198 (29%)
Query: 46 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPE---------------------- 83
K + WLP P +L+GSLPGD GFDPLGL++ E
Sbjct: 46 KYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVE 105
Query: 84 -----------------------NLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINA 120
L + + EL++ RWAML +G L+ E T +
Sbjct: 106 AIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGV----- 160
Query: 121 PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 180
W +AGK E +S + F + + W ++ G ++ P +
Sbjct: 161 -SWVEAGKVELDGASYAGLSLPFSITQLI----WIEVILVGGAE---FYRNSETNPEKRC 212
Query: 181 YPGGIFNPLNFAPTDEAK 198
YPGG+F+PL A DE +
Sbjct: 213 YPGGVFDPLKLASEDEER 230
>sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum
lycopersicum GN=CAB4 PE=2 SV=1
Length = 265
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 104/240 (43%), Gaps = 44/240 (18%)
Query: 1 MATVTTQASAAVFRPCA-SKSRFLTGSSGKLNREVALKPVSSSASFKV---EAKGEWLPG 56
MAT Q SA V + S++ F+ + ++ SA + E + ++L
Sbjct: 1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGP 60
Query: 57 LA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK 114
+ +P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120
Query: 115 IGI-INAPQWYDAGKA-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIK 158
G+ W+ AG +Y S ++ + +L +VE R
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG-- 178
Query: 159 NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
P D I YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 179 GPLGEGLDKI------------YPGGAFDPLGLADDPEAFAELKVKEIKNG----RLAMF 222
Score = 37.4 bits (85), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
FDPLGLA+DPE E+ N R AM + G + + T G I
Sbjct: 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana
tabacum GN=CAB40 PE=2 SV=1
Length = 267
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI- 117
SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 118 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLP 175
W+ AG ++ F+ ++ L H I W + G+V ++ P
Sbjct: 127 FGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGP 182
Query: 176 PNEVG---YPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
EV YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 183 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG----RLAMF 224
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 57 LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
+ P Y GS FDPLGLAEDPE E+ N R AM + G + + T G
Sbjct: 186 VVDPLYPGGS------FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
>sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba
GN=CAB1 PE=3 SV=1
Length = 266
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 60 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-I 118
P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 171
W+ AG +Y + S + + ++ ++ + P+ +
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEA 185
Query: 172 YSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGNNSAKLAYF 214
L YPGG F+PL A EA K KE+ NG +LA F
Sbjct: 186 EDLL-----YPGGSFDPLGLATDPEAFAELKVKEIKNG----RLAMF 223
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA DPE E+ N R AM + G + + T G
Sbjct: 195 FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
>sp|P27517|CB2_DUNTE Chlorophyll a-b binding protein of LHCII type I, chloroplastic
OS=Dunaliella tertiolecta PE=2 SV=1
Length = 253
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 59 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118
+P YL G PGD G+D GL+ DP+ Y + EL+++RWA+LG +G+L PE+ ++ +
Sbjct: 50 TPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGV 109
Query: 119 N--APQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK------------NPGSVN 164
P W+ AG A+ FA ++ L H I ++ N GS
Sbjct: 110 QFGEPVWFKAG-AQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGS-- 166
Query: 165 QDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214
+ L + YPGG F+PL A E K KE+ NG +LA F
Sbjct: 167 ------EGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNG----RLAMF 210
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 73 FDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIG 116
FDPLGLA+DP+ E+ N R AM +G + + T G
Sbjct: 182 FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKG 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,314,670
Number of Sequences: 539616
Number of extensions: 3795054
Number of successful extensions: 7147
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 6888
Number of HSP's gapped (non-prelim): 253
length of query: 215
length of database: 191,569,459
effective HSP length: 113
effective length of query: 102
effective length of database: 130,592,851
effective search space: 13320470802
effective search space used: 13320470802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)