Query 028008
Match_columns 215
No_of_seqs 218 out of 1104
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 07:17:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_4 Chlorophyll A-B binding 100.0 8E-55 2.7E-59 382.1 0.1 212 1-214 1-215 (251)
2 2wsc_2 LHCA2, type II chloroph 100.0 4.9E-52 1.7E-56 367.3 3.9 166 48-214 62-233 (269)
3 2wsc_3 LHCA3, type II chloroph 100.0 5.3E-49 1.8E-53 349.0 2.4 165 48-214 54-240 (276)
4 3pl9_A Chlorophyll A-B binding 100.0 8.1E-46 2.8E-50 323.0 6.8 143 48-214 9-209 (243)
5 2bhw_A Chlorophyll A-B binding 100.0 1.1E-44 3.7E-49 314.7 13.2 157 43-214 14-192 (232)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 9.1E-45 3.1E-49 316.6 5.0 152 45-214 40-203 (241)
7 3pl9_A Chlorophyll A-B binding 99.5 1.2E-14 4.2E-19 126.6 2.9 58 65-125 171-228 (243)
8 2wsc_3 LHCA3, type II chloroph 99.5 1.4E-14 4.8E-19 128.5 2.3 57 63-119 199-255 (276)
9 2bhw_A Chlorophyll A-B binding 99.4 5.5E-14 1.9E-18 121.9 4.4 55 63-118 152-206 (232)
10 2wsc_2 LHCA2, type II chloroph 99.4 2.2E-14 7.6E-19 126.7 -1.4 56 64-119 192-248 (269)
11 2wsc_1 AT3G54890, LHCA1; photo 99.3 2.4E-13 8.1E-18 118.5 0.3 55 64-119 164-219 (241)
12 2wsc_4 Chlorophyll A-B binding 99.0 1.9E-11 6.4E-16 107.1 -0.3 48 66-119 183-230 (251)
No 1
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=8e-55 Score=382.09 Aligned_cols=212 Identities=84% Similarity=1.334 Sum_probs=123.2
Q ss_pred CccccccccceeeccCccccccccCCCCcchhhccc-cccC-CCCcceee-cccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 028008 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVAL-KPVS-SSASFKVE-AKGEWLPGLASPTYLNGSLPGDNGFDPLG 77 (215)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~-~~~~~~~~-~~~~w~P~~~~p~~l~g~~PGd~gfDPlg 77 (215)
||+++++++.++++++..++++++.+++.+.+.... +..+ +.++.... +|++|+|+.++|+||||++|||+||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~pg~~~p~~l~g~~pGd~gfDPlG 80 (251)
T 2wsc_4 1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLG 80 (251)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhhccccccccCccccccchhhccccccccccccccccccccccccCcchhhhccCCCCCccccCCCcCCCCCCCccc
Confidence 889999998888888877888887766544332221 1111 23333444 58999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccchHHHHHhhhhccccccccCcCCCcccccccchhhccchhHHHHHHHHHHHHHHHHHhhcc
Q 028008 78 LAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDI 157 (215)
Q Consensus 78 l~~~pe~l~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~~~~p~w~~ag~~~~~~~~p~l~~~qi~lig~vE~~r~~~~ 157 (215)
|++|||+++|+|++|||||||||||++|++++|++++.|+++.|.||+++...|+.+.++++++|+++||++|.+||+++
T Consensus 81 l~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~ 160 (251)
T 2wsc_4 81 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDI 160 (251)
T ss_dssp CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCCSCCCSSSCSSCSSCTTTTHHHHHHTTTHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCccccccchHhhhccchHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999988888999988777887778888999999999999999999
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHhcchHhhhhccc
Q 028008 158 KNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGNNSAKLAYF 214 (215)
Q Consensus 158 ~~pg~~~~~~~~~~~~~~~~d~gyPGg~FDPLgl~~~~e~k~kEIkNGR~LAMlA~l 214 (215)
.+||+++.++.|.....+..|.+||||.||||++.+.+++|+||||||| | ||||+
T Consensus 161 ~~pG~~g~~p~f~~~~~~~~d~~yPGg~FDPLgl~~~~~~k~kELkNGR-L-MlAil 215 (251)
T 2wsc_4 161 KNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGR-L-MLAFL 215 (251)
T ss_dssp SSCCCTTCCSSSCSSSSCCHHHHSSCCTTCCCCCCSSSSCTTHHHHHHH-T-TTTHH
T ss_pred cCCCcccccccccccccccccccCCCCccCccchhHHHHHHHHHHhcch-h-HHHHH
Confidence 9999998888877655555677899999999999988889999999999 9 99985
No 2
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=4.9e-52 Score=367.29 Aligned_cols=166 Identities=54% Similarity=1.073 Sum_probs=120.5
Q ss_pred ecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhccchHHHHHhhhhccccccccCcCCCccccccc
Q 028008 48 EAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAG 127 (215)
Q Consensus 48 ~~~~~w~P~~~~p~~l~g~~PGd~gfDPlgl~~~pe~l~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~~~~p~w~~ag 127 (215)
.+|++|+|+.++|+||||++|||+|||||||++|||+++|||++|||||||||||++|++++|++++.|+++.|.||+++
T Consensus 62 ~~r~~wlpg~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG 141 (269)
T 2wsc_2 62 PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAG 141 (269)
T ss_dssp --------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTT
T ss_pred CCcccccCCCCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999988988888999988
Q ss_pred chhhccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCcccccCCCCCCCCCCCCC-CCCCCCCCC-----CHHHHHHH
Q 028008 128 KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAP-----TDEAKEKE 201 (215)
Q Consensus 128 ~~~~~~~~p~l~~~qi~lig~vE~~r~~~~~~pg~~~~~~~~~~~~~~~~d~gyPGg-~FDPLgl~~-----~~e~k~kE 201 (215)
...++.+.++++++|+++||++|.+||+++.+||+++.++.|.....+.+|.+|||| +||||||.+ .+++|++|
T Consensus 142 ~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~E 221 (269)
T 2wsc_2 142 EQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKE 221 (269)
T ss_dssp SSSSCCCTTSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTT
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhh
Confidence 777887878899999999999999999999999999888887765555678899999 699999975 24578999
Q ss_pred HhcchHhhhhccc
Q 028008 202 LANGNNSAKLAYF 214 (215)
Q Consensus 202 IkNGR~LAMlA~l 214 (215)
||||| ||||||+
T Consensus 222 i~nGR-lAMla~~ 233 (269)
T 2wsc_2 222 IKNGR-LAMLAVM 233 (269)
T ss_dssp HHHHH-HHHTTTS
T ss_pred cccch-HHHHHHH
Confidence 99999 9999986
No 3
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=5.3e-49 Score=348.99 Aligned_cols=165 Identities=45% Similarity=0.819 Sum_probs=109.2
Q ss_pred ecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHH------HHHHHHHHhccchHHHHHhhhhccccccccCcC--C
Q 028008 48 EAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII--N 119 (215)
Q Consensus 48 ~~~~~w~P~~~~p~~l~g~~PGd~gfDPlgl~~~pe~l------~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~~--~ 119 (215)
.+|++|+|+.++|+||||++|||+||||||| .||+++ +|+|++||+||||||||++|++++|++++.|++ +
T Consensus 54 ~~R~~wlP~~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~ 132 (276)
T 2wsc_3 54 SDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQE 132 (276)
T ss_dssp --------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCS
T ss_pred CCccccCCCCCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhccccccccc
Confidence 4789999999999999999999999999999 688999 999999999999999999999999999988876 3
Q ss_pred Ccc-ccc------ccchhhccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCcccc--cCCCCCCCCCCCCC-CCCCC
Q 028008 120 APQ-WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK--QYSLPPNEVGYPGG-IFNPL 189 (215)
Q Consensus 120 ~p~-w~~------ag~~~~~~~~p~l~~~qi~lig~vE~~r~~~~~~pg~~~~~~~~~--~~~~~~~d~gyPGg-~FDPL 189 (215)
.+. |++ ++..+|+.+..+++++|+++||++|.+||+++.+||+++.+++++ .......|.+|||| +||||
T Consensus 133 ~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d~~yPG~~~fDPl 212 (276)
T 2wsc_3 133 TALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPL 212 (276)
T ss_dssp SCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSSCTTTSSSSCCCC
T ss_pred CcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccccccCCCcccccch
Confidence 444 888 344456667778899999999999999999999999988877763 22334567889999 79999
Q ss_pred CCCCC----HHHHHHHHhcchHhhhhccc
Q 028008 190 NFAPT----DEAKEKELANGNNSAKLAYF 214 (215)
Q Consensus 190 gl~~~----~e~k~kEIkNGR~LAMlA~l 214 (215)
||.+. +++|++|||||| ||||||+
T Consensus 213 gl~~~~~~~~~~r~~Ei~nGR-lAMla~~ 240 (276)
T 2wsc_3 213 GFGKDEKSLKDLKLKEVKNGR-LAMLAIL 240 (276)
T ss_dssp CCSSSCC-----CCSHHHHHH-HHHHHHH
T ss_pred hcccccHHHHHHHHhhhcccc-hHHHHHH
Confidence 99863 456889999999 9999975
No 4
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=8.1e-46 Score=322.96 Aligned_cols=143 Identities=38% Similarity=0.742 Sum_probs=86.2
Q ss_pred ecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-------------------------------------------
Q 028008 48 EAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPEN------------------------------------------- 84 (215)
Q Consensus 48 ~~~~~w~P~~~~p~~l~g~~PGd~gfDPlgl~~~pe~------------------------------------------- 84 (215)
.+|+.|+|+.++|+||||++|||||||||||+++||.
T Consensus 9 ~~r~~w~pg~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (243)
T 3pl9_A 9 TDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFG 88 (243)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred cccccccCCCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhh
Confidence 5789999999999999999999999999999999873
Q ss_pred HHHHHHHHHhccchHHHHHhhhhccccccccCcCCCcccccccch------hhc-----cchhHHHHHHHHHHHHHHHHH
Q 028008 85 LKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKA------EYF-----ASSSTLFVIEFILFHYVEIRR 153 (215)
Q Consensus 85 l~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~~~~p~w~~ag~~------~~~-----~~~p~l~~~qi~lig~vE~~r 153 (215)
++||||+||+||||||||++|++++|++++ + .|+++|.. .|+ .++++++++|+++||++|.+|
T Consensus 89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g--~----~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R 162 (243)
T 3pl9_A 89 LQRFRECELIHGRWAMLATLGALTVEGLTG--I----TWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQR 162 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--C----CTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhhcchhHHHHHHHHHhHHhhcC--c----ccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999863 2 57776542 122 245688999999999999999
Q ss_pred hhcccCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHhcchHhhhhccc
Q 028008 154 WQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGNNSAKLAYF 214 (215)
Q Consensus 154 ~~~~~~pg~~~~~~~~~~~~~~~~d~gyPGg~FDPLgl~~~----~e~k~kEIkNGR~LAMlA~l 214 (215)
+++.. +.+..||||.|||||+.+. +++|++|||||| |||+||+
T Consensus 163 ~~~~~-----------------~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGR-lAMla~~ 209 (243)
T 3pl9_A 163 NAELD-----------------TEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHAR-LAMVGFL 209 (243)
T ss_dssp HSCCC-----------------TTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHH-HHHHHHH
T ss_pred hcccC-----------------CccccCCCcchhhccccccHHHHHHHHHHHHhhcc-HHHHHHH
Confidence 87531 2234699999999999873 467999999999 9999985
No 5
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=1.1e-44 Score=314.73 Aligned_cols=157 Identities=36% Similarity=0.673 Sum_probs=128.3
Q ss_pred CcceeecccCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhccchHHHHHhhhhccccccccCc-CC
Q 028008 43 ASFKVEAKGEWLPGL--ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-IN 119 (215)
Q Consensus 43 ~~~~~~~~~~w~P~~--~~p~~l~g~~PGd~gfDPlgl~~~pe~l~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~-~~ 119 (215)
+.+...+|++|+|+. ++|+||||++|||+|||||||++|+|+++||||+|||||||||||++|++++|+++..|+ +.
T Consensus 14 ~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~ 93 (232)
T 2bhw_A 14 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFG 93 (232)
T ss_dssp CTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCS
T ss_pred CcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCCc
Confidence 456678899999763 799999999999999999999999999999999999999999999999999999887775 35
Q ss_pred Ccccccccch-------hhc--------cchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCcccccCCCCCCCCCCCCC
Q 028008 120 APQWYDAGKA-------EYF--------ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG 184 (215)
Q Consensus 120 ~p~w~~ag~~-------~~~--------~~~p~l~~~qi~lig~vE~~r~~~~~~pg~~~~~~~~~~~~~~~~d~gyPGg 184 (215)
.+.|++++.. +|. ..+..++++|+++||++|.+|+++ .+.. ...|..||||
T Consensus 94 ~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~--g~~g------------~~~d~~~Pg~ 159 (232)
T 2bhw_A 94 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLG------------EVVDPLYPGG 159 (232)
T ss_dssp CCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHE--ETTE------------ECSSSSCCCT
T ss_pred ccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcc--Cccc------------ccccccCCCc
Confidence 5678887642 111 124567788999999999999875 1110 0234569999
Q ss_pred CCCCCCCCCCH----HHHHHHHhcchHhhhhccc
Q 028008 185 IFNPLNFAPTD----EAKEKELANGNNSAKLAYF 214 (215)
Q Consensus 185 ~FDPLgl~~~~----e~k~kEIkNGR~LAMlA~l 214 (215)
.|||||+.+.+ ++|++|||||| ||||||+
T Consensus 160 ~fdPlgl~~~~~~~~~~~~~E~~nGR-lAM~~~~ 192 (232)
T 2bhw_A 160 SFDPLGLADDPEAFAELKVKELKNGR-LAMFSMF 192 (232)
T ss_dssp TSCTTCTTCSHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred ccccchhccchHHHHHHHHhhhhccc-hHHHHHH
Confidence 99999998743 47899999999 9999985
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=9.1e-45 Score=316.62 Aligned_cols=152 Identities=43% Similarity=0.842 Sum_probs=101.7
Q ss_pred ceeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhccchHHHHHhhhhccccccccCcCCCcccc
Q 028008 45 FKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWY 124 (215)
Q Consensus 45 ~~~~~~~~w~P~~~~p~~l~g~~PGd~gfDPlgl~~~pe~l~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~~~~p~w~ 124 (215)
.++.+++.|+|+.++|+||||++|||+||||+||++|+|+++|||++|||||||||||++|+++||+++..+..+...|.
T Consensus 40 ~~~sm~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~ 119 (241)
T 2wsc_1 40 GRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWA 119 (241)
T ss_dssp ---------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCC
T ss_pred cccccccccCCCCCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchh
Confidence 34677889999999999999999999999999999999999999999999999999999999999997653322222232
Q ss_pred c--ccchhh------ccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC--
Q 028008 125 D--AGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT-- 194 (215)
Q Consensus 125 ~--ag~~~~------~~~~p~l~~~qi~lig~vE~~r~~~~~~pg~~~~~~~~~~~~~~~~d~gyPGg~FDPLgl~~~-- 194 (215)
. .+...| +..++.++++|+++||++|.+|+.+. + +.+..||||.|||||+.+.
T Consensus 120 ~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~--------~---------~~~~~yPgg~fDPlgl~~~~~ 182 (241)
T 2wsc_1 120 ALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK--------D---------PEKKKYPGGAFDPLGYSKDPK 182 (241)
T ss_dssp SCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC--------S---------SCCSSSCSCCSCSSSCSCSSS
T ss_pred ccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc--------C---------CCCCCCCCCcccccccccchh
Confidence 1 111122 33567888999999999999986421 1 2244699999999999863
Q ss_pred --HHHHHHHHhcchHhhhhccc
Q 028008 195 --DEAKEKELANGNNSAKLAYF 214 (215)
Q Consensus 195 --~e~k~kEIkNGR~LAMlA~l 214 (215)
+++|++|||||| |||||++
T Consensus 183 ~~~~~r~~E~~nGR-lAM~a~~ 203 (241)
T 2wsc_1 183 KLEELKVKEIKNGR-LALLAFV 203 (241)
T ss_dssp SCCCSCTTHHHHHH-HHHHHHH
T ss_pred HHHHHHHhhccccc-HHHHHHH
Confidence 346899999999 9999985
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.47 E-value=1.2e-14 Score=126.63 Aligned_cols=58 Identities=40% Similarity=0.691 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHhccchHHHHHhhhhccccccccCcCCCccccc
Q 028008 65 GSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYD 125 (215)
Q Consensus 65 g~~PGd~gfDPlgl~~~pe~l~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~~~~p~w~~ 125 (215)
..+|||+ ||||||++|+++++++|++||||||+||+|++|+++|+++++.|++. .|.+
T Consensus 171 ~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~--~l~~ 228 (243)
T 3pl9_A 171 RLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLN--NWVT 228 (243)
T ss_dssp TTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHH--HHHH
T ss_pred ccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHH--HHHH
Confidence 3589999 99999999999999999999999999999999999999999988753 4444
No 8
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.45 E-value=1.4e-14 Score=128.46 Aligned_cols=57 Identities=32% Similarity=0.517 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhccchHHHHHhhhhccccccccCcCC
Q 028008 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119 (215)
Q Consensus 63 l~g~~PGd~gfDPlgl~~~pe~l~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~~~ 119 (215)
.|..+|||++|||+||++|+++++++|++||||||+||||++|+++|+++++.|++.
T Consensus 199 ~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~ 255 (276)
T 2wsc_3 199 GEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQ 255 (276)
T ss_dssp SSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSC
T ss_pred ccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHH
Confidence 355799999999999998888899999999999999999999999999999988764
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.43 E-value=5.5e-14 Score=121.88 Aligned_cols=55 Identities=38% Similarity=0.666 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhccchHHHHHhhhhccccccccCcC
Q 028008 63 LNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII 118 (215)
Q Consensus 63 l~g~~PGd~gfDPlgl~~~pe~l~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~~ 118 (215)
.|..+|||+ |||+||++|+++++++|.+||||||+||+|++|+++|+++++.|++
T Consensus 152 ~d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~ 206 (232)
T 2bhw_A 152 VDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 206 (232)
T ss_dssp SSSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSH
T ss_pred ccccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChH
Confidence 356799999 9999999999999999999999999999999999999999988875
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.38 E-value=2.2e-14 Score=126.73 Aligned_cols=56 Identities=38% Similarity=0.615 Sum_probs=51.4
Q ss_pred CCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHhccchHHHHHhhhhccccccccCcCC
Q 028008 64 NGSLPGDNGFDPLGLAE-DPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119 (215)
Q Consensus 64 ~g~~PGd~gfDPlgl~~-~pe~l~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~~~ 119 (215)
|..+|||++|||+||.+ |+|+++++|.+||||||+||+|++|+++|+++++.|++.
T Consensus 192 d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~ 248 (269)
T 2wsc_2 192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 248 (269)
T ss_dssp SCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSC
T ss_pred ccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHH
Confidence 45789999999999974 788899999999999999999999999999999988864
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.30 E-value=2.4e-13 Score=118.52 Aligned_cols=55 Identities=33% Similarity=0.637 Sum_probs=49.4
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHhccchHHHHHhhhhccc-cccccCcCC
Q 028008 64 NGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPE-VFTKIGIIN 119 (215)
Q Consensus 64 ~g~~PGd~gfDPlgl~~~pe~l~~~r~aElkhGRlAMLA~~G~~~~e-~~~~~G~~~ 119 (215)
++.+||++ |||+||++|+++++++|.+||||||+||+|++|+++|+ .+++.|++.
T Consensus 164 ~~~yPgg~-fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~ 219 (241)
T 2wsc_1 164 KKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 219 (241)
T ss_dssp CSSSCSCC-SCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCC
T ss_pred CCCCCCCc-ccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHH
Confidence 45789995 99999999999999999999999999999999999999 478888764
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.04 E-value=1.9e-11 Score=107.11 Aligned_cols=48 Identities=29% Similarity=0.491 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHhccchHHHHHhhhhccccccccCcCC
Q 028008 66 SLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIIN 119 (215)
Q Consensus 66 ~~PGd~gfDPlgl~~~pe~l~~~r~aElkhGRlAMLA~~G~~~~e~~~~~G~~~ 119 (215)
.+|||+ ||||++.+ ++.+|.+||||||+ |+|++|+++|+++++.|++.
T Consensus 183 ~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~ 230 (251)
T 2wsc_4 183 GYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFD 230 (251)
T ss_dssp HSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCC
T ss_pred cCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHH
Confidence 579999 99999975 56789999999999 99999999999999988764
Done!