Query 028009
Match_columns 215
No_of_seqs 131 out of 1105
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:52:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1692 Putative cargo transpo 100.0 2E-49 4.4E-54 301.7 19.4 195 10-211 4-200 (201)
2 KOG1690 emp24/gp25L/p24 family 100.0 2.7E-42 6E-47 263.7 19.1 195 13-210 5-213 (215)
3 KOG1691 emp24/gp25L/p24 family 100.0 1.2E-41 2.6E-46 264.1 22.4 198 9-210 2-208 (210)
4 KOG1693 emp24/gp25L/p24 family 100.0 4.2E-41 9.2E-46 257.6 20.2 190 18-213 13-208 (209)
5 KOG3287 Membrane trafficking p 100.0 1.1E-35 2.3E-40 230.4 19.6 177 29-211 36-228 (236)
6 PF01105 EMP24_GP25L: emp24/gp 100.0 2.9E-37 6.2E-42 241.8 0.5 174 28-207 1-183 (183)
7 PF01835 A2M_N: MG2 domain; I 95.4 0.37 8E-06 33.5 10.2 67 46-112 13-88 (99)
8 smart00557 IG_FLMN Filamin-typ 91.7 1.8 3.9E-05 29.8 7.9 45 67-111 31-78 (93)
9 PF04151 PPC: Bacterial pre-pe 88.8 2.2 4.8E-05 27.5 6.0 61 37-107 3-68 (70)
10 PF00630 Filamin: Filamin/ABP2 88.5 4 8.7E-05 28.0 7.6 43 68-110 42-91 (101)
11 PF13897 GOLD_2: Golgi-dynamic 85.9 1.4 3.1E-05 32.7 4.1 27 95-121 105-133 (136)
12 PF11589 DUF3244: Domain of un 82.9 6.8 0.00015 27.6 6.5 46 67-112 47-96 (106)
13 PF05738 Cna_B: Cna protein B- 80.1 4.2 9.1E-05 26.0 4.3 44 69-112 3-48 (70)
14 PF10779 XhlA: Haemolysin XhlA 79.4 15 0.00032 24.0 7.6 21 138-158 8-28 (71)
15 PF09315 DUF1973: Domain of un 78.5 30 0.00064 27.1 10.3 54 69-122 42-99 (179)
16 PF13860 FlgD_ig: FlgD Ig-like 77.9 14 0.0003 24.6 6.4 54 48-108 12-76 (81)
17 PF05753 TRAP_beta: Translocon 77.3 33 0.00071 26.9 9.3 32 39-76 30-61 (181)
18 PF13620 CarboxypepD_reg: Carb 76.2 10 0.00022 24.8 5.4 45 68-112 15-59 (82)
19 PF12690 BsuPI: Intracellular 71.4 10 0.00022 25.6 4.4 21 67-87 23-43 (82)
20 PRK13159 cytochrome c-type bio 70.7 22 0.00048 27.1 6.5 15 67-81 71-85 (155)
21 PF04728 LPP: Lipoprotein leuc 70.4 22 0.00048 22.2 5.3 44 137-180 4-47 (56)
22 PRK12813 flgD flagellar basal 68.8 22 0.00047 28.9 6.5 58 47-112 110-176 (223)
23 PRK06655 flgD flagellar basal 68.7 20 0.00043 29.2 6.3 55 49-110 114-179 (225)
24 PRK12812 flgD flagellar basal 67.3 50 0.0011 27.5 8.5 55 49-110 129-194 (259)
25 PF13150 DUF3989: Protein of u 66.1 2.7 5.9E-05 28.7 0.7 28 2-29 23-50 (85)
26 PF15417 DUF4624: Domain of un 65.3 49 0.0011 23.8 7.8 77 37-124 40-123 (132)
27 PF07495 Y_Y_Y: Y_Y_Y domain; 62.5 35 0.00076 21.2 6.0 41 69-112 9-50 (66)
28 PF10648 Gmad2: Immunoglobulin 62.4 29 0.00062 23.7 5.3 40 43-85 7-46 (88)
29 PRK14081 triple tyrosine motif 62.4 58 0.0012 30.9 8.8 52 70-122 418-476 (667)
30 COG4068 Uncharacterized protei 61.8 8.8 0.00019 24.1 2.3 19 3-21 38-56 (64)
31 PF09753 Use1: Membrane fusion 61.7 70 0.0015 26.2 8.5 24 182-206 228-251 (251)
32 PRK15396 murein lipoprotein; P 60.9 43 0.00093 22.5 5.7 45 136-180 25-69 (78)
33 PHA03376 BARF1; Provisional 60.5 86 0.0019 25.1 9.4 81 22-112 14-111 (221)
34 KOG3202 SNARE protein TLG1/Syn 60.5 55 0.0012 26.8 7.4 24 135-158 151-174 (235)
35 PRK05842 flgD flagellar basal 60.5 40 0.00086 28.6 6.8 59 49-110 150-221 (295)
36 PRK12634 flgD flagellar basal 59.2 58 0.0013 26.4 7.4 44 67-110 121-175 (221)
37 COG4856 Uncharacterized protei 57.3 87 0.0019 27.6 8.4 20 67-86 69-88 (403)
38 PF07210 DUF1416: Protein of u 57.2 59 0.0013 22.1 8.9 59 47-112 7-65 (85)
39 PF03100 CcmE: CcmE; InterPro 57.0 11 0.00024 27.8 2.7 34 47-80 50-83 (131)
40 PRK12633 flgD flagellar basal 56.9 86 0.0019 25.5 8.0 44 68-111 129-183 (230)
41 PRK13165 cytochrome c-type bio 56.1 64 0.0014 24.8 6.7 36 47-82 57-92 (160)
42 PRK09973 putative outer membra 54.7 59 0.0013 22.2 5.6 53 136-188 24-76 (85)
43 PRK13254 cytochrome c-type bio 54.1 63 0.0014 24.5 6.4 58 21-80 26-83 (148)
44 PRK13150 cytochrome c-type bio 53.9 88 0.0019 24.0 7.1 38 47-84 57-94 (159)
45 KOG2861 Uncharacterized conser 53.8 37 0.0008 30.0 5.7 55 141-201 338-392 (399)
46 PF08525 OapA_N: Opacity-assoc 52.8 19 0.00041 19.4 2.5 22 5-26 8-29 (30)
47 KOG0518 Actin-binding cytoskel 52.6 45 0.00098 33.1 6.5 46 67-112 882-930 (1113)
48 PF07835 COX4_pro_2: Bacterial 50.4 49 0.0011 19.5 4.2 28 169-196 14-41 (44)
49 COG1723 Uncharacterized conser 50.0 27 0.00059 29.8 4.1 55 141-201 271-325 (331)
50 COG5415 Predicted integral mem 48.8 1.4E+02 0.0031 24.0 8.4 68 136-203 15-87 (251)
51 PRK09619 flgD flagellar basal 46.5 75 0.0016 25.7 6.1 57 48-112 110-174 (218)
52 KOG1693 emp24/gp25L/p24 family 46.1 1.5E+02 0.0033 23.6 8.0 152 24-191 31-197 (209)
53 PRK10378 inactive ferrous ion 46.0 86 0.0019 27.6 6.8 68 27-106 30-103 (375)
54 TIGR03503 conserved hypothetic 43.9 2.3E+02 0.0049 25.0 11.0 40 68-107 242-284 (374)
55 PF00517 GP41: Retroviral enve 43.1 1.2E+02 0.0026 24.1 6.8 58 140-197 105-168 (204)
56 PF13956 Ibs_toxin: Toxin Ibs, 43.0 12 0.00026 17.7 0.6 13 9-21 1-13 (19)
57 PF10528 PA14_2: GLEYA domain; 41.3 61 0.0013 23.2 4.4 45 35-85 58-102 (113)
58 PF13715 DUF4480: Domain of un 40.3 1.1E+02 0.0023 20.1 5.7 48 68-120 16-63 (88)
59 PF09323 DUF1980: Domain of un 39.8 49 0.0011 25.7 4.0 34 175-208 26-59 (182)
60 PF08234 Spindle_Spc25: Chromo 39.8 1.1E+02 0.0023 20.0 6.2 28 98-125 4-33 (74)
61 PHA02650 hypothetical protein; 39.7 47 0.001 22.2 3.2 33 174-206 42-74 (81)
62 PRK14081 triple tyrosine motif 39.6 2.4E+02 0.0052 26.9 9.0 45 78-122 521-572 (667)
63 cd05860 Ig4_SCFR Fourth immuno 37.3 59 0.0013 22.9 3.7 27 96-123 73-99 (101)
64 PF07125 DUF1378: Protein of u 37.2 64 0.0014 20.0 3.3 30 178-209 6-35 (59)
65 PF05377 FlaC_arch: Flagella a 36.4 1.1E+02 0.0023 19.1 5.6 28 138-165 2-29 (55)
66 PF10754 DUF2569: Protein of u 35.3 1.1E+02 0.0024 22.9 5.2 33 182-214 54-86 (149)
67 PHA01750 hypothetical protein 35.0 85 0.0018 20.3 3.7 29 179-207 4-33 (75)
68 PF14109 GldH_lipo: GldH lipop 35.0 1E+02 0.0022 22.6 4.9 45 68-112 68-117 (131)
69 PHA02975 hypothetical protein; 34.1 89 0.0019 20.3 3.7 28 177-204 40-67 (69)
70 PF05984 Cytomega_UL20A: Cytom 34.0 1.5E+02 0.0032 20.1 4.9 14 69-82 68-81 (100)
71 PHA03054 IMV membrane protein; 33.4 73 0.0016 20.9 3.3 28 176-203 43-70 (72)
72 PRK14149 heat shock protein Gr 33.3 2.3E+02 0.005 22.4 6.8 40 135-174 42-81 (191)
73 PF12669 P12: Virus attachment 33.1 34 0.00073 21.5 1.7 9 202-210 17-25 (58)
74 PHA02819 hypothetical protein; 32.8 89 0.0019 20.5 3.6 29 176-204 41-69 (71)
75 PF08114 PMP1_2: ATPase proteo 32.4 51 0.0011 19.1 2.2 28 187-214 15-42 (43)
76 PF07888 CALCOCO1: Calcium bin 32.4 4.2E+02 0.0091 24.7 11.0 14 100-113 87-100 (546)
77 PF05739 SNARE: SNARE domain; 31.2 1.3E+02 0.0028 18.4 5.0 44 136-179 4-47 (63)
78 PF09577 Spore_YpjB: Sporulati 30.9 3E+02 0.0065 22.5 8.6 24 180-203 198-221 (232)
79 COG5415 Predicted integral mem 30.4 2.9E+02 0.0064 22.3 7.7 57 135-198 7-63 (251)
80 PF03554 Herpes_UL73: UL73 vir 30.0 1E+02 0.0022 20.9 3.7 27 176-202 45-71 (82)
81 PF13172 PepSY_TM_1: PepSY-ass 29.9 72 0.0016 17.3 2.5 20 4-23 6-25 (34)
82 PF15432 Sec-ASP3: Accessory S 29.7 2.3E+02 0.005 20.9 7.3 41 72-113 74-115 (128)
83 PF13464 DUF4115: Domain of un 29.1 1.7E+02 0.0036 19.0 6.1 42 69-112 8-49 (77)
84 cd05864 Ig2_VEGFR-2 Second imm 28.9 81 0.0018 20.1 3.1 26 97-122 43-69 (70)
85 PHA02844 putative transmembran 28.5 98 0.0021 20.5 3.3 26 179-204 46-71 (75)
86 PF14524 Wzt_C: Wzt C-terminal 27.7 1.6E+02 0.0034 20.9 4.9 19 67-85 51-69 (142)
87 PF05399 EVI2A: Ectropic viral 27.6 1E+02 0.0022 24.8 3.9 27 6-33 5-31 (227)
88 COG2373 Large extracellular al 27.4 5.1E+02 0.011 27.7 9.7 66 46-111 407-479 (1621)
89 PF10805 DUF2730: Protein of u 27.3 1.3E+02 0.0028 21.2 4.1 47 133-179 32-87 (106)
90 PHA02955 hypothetical protein; 27.1 73 0.0016 25.6 3.0 27 182-209 180-206 (213)
91 cd08355 Glo_EDI_BRP_like_14 Th 26.5 64 0.0014 22.3 2.5 13 70-82 105-117 (122)
92 PF01606 Arteri_env: Arterivir 26.2 2.5E+02 0.0054 22.0 5.6 40 18-58 13-55 (214)
93 cd04976 Ig2_VEGFR Second immun 26.2 79 0.0017 20.0 2.7 25 97-121 44-69 (71)
94 PF10794 DUF2606: Protein of u 25.8 2.7E+02 0.0058 20.4 7.8 25 88-112 85-109 (131)
95 PLN03160 uncharacterized prote 25.6 1.7E+02 0.0036 23.6 5.0 11 70-80 97-107 (219)
96 KOG2678 Predicted membrane pro 25.6 3.7E+02 0.0081 21.9 9.0 33 177-209 211-243 (244)
97 TIGR02186 alph_Pro_TM conserve 25.2 4E+02 0.0088 22.2 9.1 44 67-111 68-117 (261)
98 KOG3317 Translocon-associated 24.9 3.4E+02 0.0073 21.2 6.3 25 47-76 41-65 (188)
99 PF08372 PRT_C: Plant phosphor 24.9 3.2E+02 0.0069 20.9 8.0 50 135-184 51-100 (156)
100 PF14686 fn3_3: Polysaccharide 24.9 2.4E+02 0.0052 19.4 6.5 62 48-110 3-69 (95)
101 COG4932 Predicted outer membra 24.6 2.6E+02 0.0056 28.9 6.7 86 27-112 1131-1217(1531)
102 PHA03163 hypothetical protein; 24.6 2E+02 0.0043 19.8 4.3 27 175-201 53-79 (92)
103 PF10805 DUF2730: Protein of u 24.4 93 0.002 22.0 2.9 27 181-207 7-33 (106)
104 PF05371 Phage_Coat_Gp8: Phage 24.3 1.1E+02 0.0024 18.7 2.8 23 186-208 29-51 (52)
105 PF04136 Sec34: Sec34-like fam 24.2 3.2E+02 0.007 20.7 6.4 50 141-190 33-82 (157)
106 PF04678 DUF607: Protein of un 24.1 3.4E+02 0.0074 21.0 8.9 43 143-185 57-99 (180)
107 PF10670 DUF4198: Domain of un 23.8 3.4E+02 0.0075 20.9 7.2 39 69-107 166-209 (215)
108 PF07523 Big_3: Bacterial Ig-l 23.6 2E+02 0.0043 18.0 4.9 49 68-121 17-65 (67)
109 PF14654 Epiglycanin_C: Mucin, 23.5 1.8E+02 0.0039 20.4 4.0 32 180-211 20-51 (106)
110 PF13544 N_methyl_2: Type IV p 23.0 99 0.0021 16.6 2.2 21 176-196 9-29 (31)
111 PF14054 DUF4249: Domain of un 22.9 4.3E+02 0.0093 21.7 8.5 91 18-109 6-108 (298)
112 PF03929 PepSY_TM: PepSY-assoc 22.3 1.2E+02 0.0026 15.8 2.4 18 5-22 3-20 (27)
113 COG4062 MtrB Tetrahydromethano 22.3 77 0.0017 22.3 2.1 23 137-159 32-54 (108)
114 TIGR02542 B_forsyth_147 Bacter 22.0 55 0.0012 23.8 1.3 15 98-112 114-128 (145)
115 PF15468 DUF4636: Domain of un 22.0 68 0.0015 25.9 2.0 20 8-27 40-59 (243)
116 PRK00523 hypothetical protein; 21.9 2.3E+02 0.0049 18.7 4.1 28 181-208 5-32 (72)
117 PRK10894 lipopolysaccharide tr 21.5 2.4E+02 0.0051 21.8 5.0 13 48-60 48-60 (180)
118 PF08842 Mfa2: Fimbrillin-A as 21.4 99 0.0021 25.1 3.0 64 47-110 7-77 (283)
119 KOG0860 Synaptobrevin/VAMP-lik 21.2 3.3E+02 0.0071 19.7 8.5 6 179-184 85-90 (116)
120 PF09889 DUF2116: Uncharacteri 21.2 2.3E+02 0.0049 17.9 5.0 13 176-188 36-48 (59)
121 PF02927 CelD_N: N-terminal ig 21.2 2.7E+02 0.0059 18.7 4.8 42 69-110 35-87 (91)
122 PRK01844 hypothetical protein; 21.1 2.3E+02 0.005 18.6 4.0 26 183-208 6-31 (72)
123 PF07086 DUF1352: Protein of u 20.6 3.4E+02 0.0074 21.4 5.7 34 163-196 20-53 (186)
124 PRK14758 hypothetical protein; 20.3 1.5E+02 0.0032 15.4 2.5 20 1-20 1-20 (27)
125 KOG0518 Actin-binding cytoskel 20.1 3.3E+02 0.0071 27.5 6.4 56 50-111 378-437 (1113)
126 PF14584 DUF4446: Protein of u 20.1 2.2E+02 0.0048 21.6 4.4 44 135-178 38-81 (151)
127 PF13260 DUF4051: Protein of u 20.0 1.7E+02 0.0038 17.6 3.0 17 190-206 10-26 (54)
No 1
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-49 Score=301.70 Aligned_cols=195 Identities=39% Similarity=0.659 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHHhhcceEEEEEeCCcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeec
Q 028009 10 VATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTS 89 (215)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~f~l~~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~ 89 (215)
+...++|+++|++...+.++++++.++|||+|++.+ |+.+.++|+|.+|+ ..++++.|++|+|+++++..+.+
T Consensus 4 ~~~~~vll~~L~~~~~~~~is~~ah~eeCf~e~~~~-gd~~~vsF~v~~gg------~~~vd~~I~gP~~~~i~~~~~~s 76 (201)
T KOG1692|consen 4 LASVIVLLGLLFISAAGYGISLDAHEEECFFENLEE-GDKLSVSFEVIDGG------FLGVDVEITGPDGKIIHKGKRES 76 (201)
T ss_pred hhhHHHHHHHHHHHhhheeEEEccchhhhHhhhhcc-CCEEEEEEEEecCC------ccceeEEEECCCCchhhhccccc
Confidence 566788888888888899999999999999999995 99999999999976 67999999999999999998889
Q ss_pred CCEEEEEcCCCceeeEEEEcCCC--CCeEEEEEEEEccCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028009 90 GDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDT 167 (215)
Q Consensus 90 ~g~f~f~~~~~G~y~iCf~n~~~--~~~~V~f~i~~~~~~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~ 167 (215)
.|+|+|+++.+|.|++||+|..+ .||.|.|++++|..+++++.+++++.+++++.+++|.+.+..++.||+|+..|+.
T Consensus 77 sgk~tF~a~~~G~Y~fCF~N~~s~mtpk~V~F~ihvg~~~~~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer 156 (201)
T KOG1692|consen 77 SGKYTFTAPKKGTYTFCFSNKMSTMTPKTVMFTIHVGHAPQRDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARER 156 (201)
T ss_pred CceEEEEecCCceEEEEecCCCCCCCceEEEEEEEEeeccccchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999 5999999999998877777888899999999999999999999999999999999
Q ss_pred HhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 028009 168 RHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVA 211 (215)
Q Consensus 168 ~~~~~~es~~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk~ 211 (215)
.||.++|+|++||.|||++|.++||+++++|||||||||++|+.
T Consensus 157 ~Hr~~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfFEvkrv 200 (201)
T KOG1692|consen 157 IHRNTNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFEVKRV 200 (201)
T ss_pred HHHHhhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhheeeec
Confidence 99999999999999999999999999999999999999999874
No 2
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-42 Score=263.66 Aligned_cols=195 Identities=24% Similarity=0.350 Sum_probs=170.5
Q ss_pred HHHHHHHHHHhhcceEEEEEeC--CcceeeEecccCCcEEEEEEEEEeCcc---cc-CCCCCCeeEEEEcCCCC--eEee
Q 028009 13 YMILALLMSLIGRLSSLSVTVN--DVECVYEYVIYEGDTVAGNFVVVDHDI---FW-STDHPGIDFTVTSPAGN--VVHT 84 (215)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~f~l~--~~eCF~e~v~~~~~~i~~~y~v~~~~~---~~-~~~~~~i~~~I~~p~g~--~l~~ 84 (215)
+..++||++++..+.|++|+++ +++||++++|+ ++.+.|+|.+.-.+. .| ...+.++.+.|.+|.++ ++++
T Consensus 5 ~~~~lll~~l~~~~~a~yFy~~~~e~KCF~eelpk-~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~ 83 (215)
T KOG1690|consen 5 MRLLLLLLLLATQVQALYFYIAGTEKKCFIEELPK-GTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLS 83 (215)
T ss_pred HHHHHHHHHHHhhccEEEEEecCCcccchhhhCCC-CcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEe
Confidence 5678888899999999999995 67899999996 999999999864332 12 12356889999999665 9999
Q ss_pred eeeecCCEEEEEcCCCceeeEEEEcCCCC-----CeEEEEEEEEccCC-CCCcccccCCCchHHHHHHHHHHHHHHHHHH
Q 028009 85 VKGTSGDKFEFKAPRSGMYKFCFNNPYST-----PETVSFYIHVGHIP-NEHNLAKDEHLDPINVKIAELREALESVVSE 158 (215)
Q Consensus 85 ~~~~~~g~f~f~~~~~G~y~iCf~n~~~~-----~~~V~f~i~~~~~~-~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~ 158 (215)
+.+.++|+|+|++.++|+|+||+.+..+. ..+|.+++++|.+. ++. ..+++.+.++.++..|++++..|..|
T Consensus 84 q~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a--~~ke~~k~l~~Rv~~L~~~~~~IrkE 161 (215)
T KOG1690|consen 84 QQYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDA--QIKETDKLLEGRVRQLNSRLESIRKE 161 (215)
T ss_pred ecCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhh--hhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888762 46999999999774 222 23466778888999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 028009 159 QKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSV 210 (215)
Q Consensus 159 q~~~~~re~~~~~~~es~~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk 210 (215)
|+++|.||+++|++.||+|+|++|||++|+++|+++|+||+.+||+||.++|
T Consensus 162 Q~~~R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqK 213 (215)
T KOG1690|consen 162 QNLQREREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQK 213 (215)
T ss_pred HHHHHHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999987
No 3
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-41 Score=264.08 Aligned_cols=198 Identities=28% Similarity=0.482 Sum_probs=178.1
Q ss_pred hHHHHH-HHHHHHHHhhcceEEEEEeC--CcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeee
Q 028009 9 YVATYM-ILALLMSLIGRLSSLSVTVN--DVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTV 85 (215)
Q Consensus 9 ~~~~~~-~~~~~~~~~~~~~~l~f~l~--~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~ 85 (215)
++++.. .++++++++..+.|+.|+++ .+.|+.|++.+ |..+.|.|.+.+.... ..+.+++.|+||.|+.+++.
T Consensus 2 ~~~~~~~~l~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~~-n~lv~g~y~i~~~~~~---~~~~~~~~Vts~~G~~~~~~ 77 (210)
T KOG1691|consen 2 MMPCLSLLLLIFLLLLPLVHALRFDVPSKTTKCISEEIHE-NVLVVGDYEIINPNGD---HSHKLSVKVTSPYGNNLHSK 77 (210)
T ss_pred ccHhHHHHHHHHHHHhhhhheEEEEecCCCCEeehhhhcc-CeEEEEEEEEecCCCC---ccceEEEEEEcCCCceeehh
Confidence 344444 44456688999999999995 68999999996 9999999999876521 12579999999999999999
Q ss_pred eeecCCEEEEEcCCCceeeEEEEcC--CCC---CeEEEEEEEEccC-CCCCcccccCCCchHHHHHHHHHHHHHHHHHHH
Q 028009 86 KGTSGDKFEFKAPRSGMYKFCFNNP--YST---PETVSFYIHVGHI-PNEHNLAKDEHLDPINVKIAELREALESVVSEQ 159 (215)
Q Consensus 86 ~~~~~g~f~f~~~~~G~y~iCf~n~--~~~---~~~V~f~i~~~~~-~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q 159 (215)
++..+|+|+|++.+.|.|.+||.|. ... ...|+|++..|.+ +||+++|++++++|+|.++++|++.+..|.++.
T Consensus 78 env~~gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~ 157 (210)
T KOG1691|consen 78 ENVTKGQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEM 157 (210)
T ss_pred hccccceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999993 333 3689999999987 589999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 028009 160 KYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSV 210 (215)
Q Consensus 160 ~~~~~re~~~~~~~es~~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk 210 (215)
-|++.||+++|+++|+||+||.|+|++.++++++++.||++|||+||++||
T Consensus 158 ~YLr~REeemr~~nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKK 208 (210)
T KOG1691|consen 158 YYLREREEEMRNTNESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKK 208 (210)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999997
No 4
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-41 Score=257.64 Aligned_cols=190 Identities=31% Similarity=0.482 Sum_probs=168.3
Q ss_pred HHHHHhhcceEEEEEeC--CcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeecCCEEEE
Q 028009 18 LLMSLIGRLSSLSVTVN--DVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEF 95 (215)
Q Consensus 18 ~~~~~~~~~~~l~f~l~--~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~~g~f~f 95 (215)
+++++++.+..|+|+++ .++|||+++++.++.+++.|+|+.|| +.+|++.|.+|+|+++++..++..++|.|
T Consensus 13 lla~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG------~fDVD~~I~aPdgkvI~~~~kk~~~~~~f 86 (209)
T KOG1693|consen 13 LLALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG------HFDVDYDIEAPDGKVIYSEKKKRYDSFLF 86 (209)
T ss_pred HHHHHhhhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC------ceeeEEEEECCCCCEEeeccccccccEEE
Confidence 34455566889999995 78999999997555599999999997 67999999999999999999999999999
Q ss_pred EcCCCceeeEEEEcCCCC--CeEEEEEEEEccCCCCCcc--cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 028009 96 KAPRSGMYKFCFNNPYST--PETVSFYIHVGHIPNEHNL--AKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRH 171 (215)
Q Consensus 96 ~~~~~G~y~iCf~n~~~~--~~~V~f~i~~~~~~~~~~~--a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~ 171 (215)
++...|+|++||+|..++ .|.|.+++++|.+.+.... +.+...+.++..+..+.+.|+.|.+.|.|+|.||.+.+.
T Consensus 87 ~ae~~G~Y~fCFsN~fstf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~ 166 (209)
T KOG1693|consen 87 KAEGKGEYTFCFSNEFSTFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRS 166 (209)
T ss_pred EEecceEEEEEecCccccccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999985 7999999999976433222 223456788999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 028009 172 TNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVAYN 213 (215)
Q Consensus 172 ~~es~~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk~~~ 213 (215)
+++|+++||+|||++++++++++++.|++.||.||+.|+..+
T Consensus 167 tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r~~~ 208 (209)
T KOG1693|consen 167 TVESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTDRRKRY 208 (209)
T ss_pred chhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 999999999999999999999999999999999999887643
No 5
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-35 Score=230.39 Aligned_cols=177 Identities=27% Similarity=0.458 Sum_probs=154.4
Q ss_pred EEEEe--CCcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeecCCEEEEEcCCCceeeEE
Q 028009 29 LSVTV--NDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFC 106 (215)
Q Consensus 29 l~f~l--~~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~~g~f~f~~~~~G~y~iC 106 (215)
+++.+ |+++|||+.++. +..+.++|+|.+|. ++.+|++++.+|.|.++.+.+.+..|.+.+.+.++|.|++|
T Consensus 36 ftv~ipAGk~eCf~Q~v~~-~~tle~eyQVi~G~-----GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~C 109 (236)
T KOG3287|consen 36 FTVMIPAGKTECFYQPVPQ-GATLEVEYQVIDGA-----GDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVC 109 (236)
T ss_pred eEEEecCCCceeeeeeccC-CeEEEEEEEEEecC-----CccceeeEEeCCCccEEeecccccCceeEeeccCCcceEEE
Confidence 45555 589999999995 89999999999982 36899999999999999998889999999999999999999
Q ss_pred EEcCCCC--CeEEEEEEEEccCC-------CCCcccc-----cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 028009 107 FNNPYST--PETVSFYIHVGHIP-------NEHNLAK-----DEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHT 172 (215)
Q Consensus 107 f~n~~~~--~~~V~f~i~~~~~~-------~~~~~a~-----~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~ 172 (215)
|+|++|. .|.|.|++-+..+. .|.+.++ ..+++++++.++.+.+++..+...|..+|.||.++|.+
T Consensus 110 fDNsFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L 189 (236)
T KOG3287|consen 110 FDNSFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNL 189 (236)
T ss_pred EcCccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999995 89999998554321 1222111 23567889999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 028009 173 NESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVA 211 (215)
Q Consensus 173 ~es~~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk~ 211 (215)
.+|+..||.|||.+|++++|+++..|+|+||++|+.|+.
T Consensus 190 ~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~~ 228 (236)
T KOG3287|consen 190 QESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKSK 228 (236)
T ss_pred HhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCCC
Confidence 999999999999999999999999999999999998853
No 6
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=100.00 E-value=2.9e-37 Score=241.82 Aligned_cols=174 Identities=40% Similarity=0.700 Sum_probs=5.5
Q ss_pred EEEEEeC--CcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEE--cCCCCeEeeeeee-cCCEEEEEcCCCce
Q 028009 28 SLSVTVN--DVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVT--SPAGNVVHTVKGT-SGDKFEFKAPRSGM 102 (215)
Q Consensus 28 ~l~f~l~--~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~--~p~g~~l~~~~~~-~~g~f~f~~~~~G~ 102 (215)
|++|.++ +++||++++++ ++.+.|+|.+.+++ ...++++.|+ +|+|+.++...+. .+|.|+|+++++|+
T Consensus 1 a~~f~l~~g~~~Cf~e~v~~-~~~i~~~y~v~~~~-----~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~ 74 (183)
T PF01105_consen 1 ALTFELEPGETECFYEEVPK-GTTIRGSYRVTDGG-----GAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGE 74 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCcEEEEEEcCC-CcEEEEEEEEeecc-----ccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCC
Confidence 5778884 78999999996 99999999998765 2468999999 5666888888655 45799999999999
Q ss_pred eeEEEEcCCCC--C-eEEEEEEEEccCC-CCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 028009 103 YKFCFNNPYST--P-ETVSFYIHVGHIP-NEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRK 178 (215)
Q Consensus 103 y~iCf~n~~~~--~-~~V~f~i~~~~~~-~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~ 178 (215)
|++||+|+.+. + +.|+|+++++.+. ++++.++++++++++..|++|.+.++.|.++|+|++.|+.+|++++++++.
T Consensus 75 y~iCf~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~ 154 (183)
T PF01105_consen 75 YQICFDNSSSSFSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNS 154 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEcCCCCccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999986 4 8999999998653 567788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028009 179 RLLGYTIGEYVLLAMASALQVLYIRKLFS 207 (215)
Q Consensus 179 rv~~~sii~i~vli~~~~~Qv~~lk~fF~ 207 (215)
||+||+++++++++++++||+++||+||+
T Consensus 155 ~i~~~si~~~~vli~~~~~Qv~~lk~~f~ 183 (183)
T PF01105_consen 155 RIMWWSIIQIVVLILVSVWQVYYLKKFFK 183 (183)
T ss_dssp -----------------------HHHHHH
T ss_pred eEEhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999996
No 7
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=95.45 E-value=0.37 Score=33.46 Aligned_cols=67 Identities=22% Similarity=0.267 Sum_probs=43.5
Q ss_pred CCcEEEEEEEEEeCcc-ccCCCCCCeeEEEEcCCCCeEeeeee---ecCCEEEE--Ec---CCCceeeEEEEcCCC
Q 028009 46 EGDTVAGNFVVVDHDI-FWSTDHPGIDFTVTSPAGNVVHTVKG---TSGDKFEF--KA---PRSGMYKFCFNNPYS 112 (215)
Q Consensus 46 ~~~~i~~~y~v~~~~~-~~~~~~~~i~~~I~~p~g~~l~~~~~---~~~g~f~f--~~---~~~G~y~iCf~n~~~ 112 (215)
+|+.+.+.--+.+.+. ...+.+..+.+.|.||+|+.+.++.. ...|.+++ .. ...|.|++=+.....
T Consensus 13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~ 88 (99)
T PF01835_consen 13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDD 88 (99)
T ss_dssp TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTT
T ss_pred CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccC
Confidence 6888877766655441 11223568999999999999988765 24565444 33 236899998888544
No 8
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=91.68 E-value=1.8 Score=29.76 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=33.1
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|+|+.+.-. .+...| ..+|++...|.|.+.+.-..
T Consensus 31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 4679999999999755433 334456 56778899999999886554
No 9
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=88.79 E-value=2.2 Score=27.53 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=41.4
Q ss_pred ceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeec--C---CEEEEEcCCCceeeEEE
Q 028009 37 ECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTS--G---DKFEFKAPRSGMYKFCF 107 (215)
Q Consensus 37 eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~--~---g~f~f~~~~~G~y~iCf 107 (215)
..|...+++ +..+.+. +... ..+.++.+.+++|..+....... . ....|+++.+|+|.+=+
T Consensus 3 D~y~f~v~a-g~~l~i~--l~~~-------~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 3 DYYSFTVPA-GGTLTID--LSGG-------SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp EEEEEEEST-TEEEEEE--ECET-------TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred EEEEEEEcC-CCEEEEE--EcCC-------CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence 467788885 7777654 3222 23788999999987766533222 2 35778889999998754
No 10
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=88.53 E-value=4 Score=28.03 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=30.7
Q ss_pred CCeeEEEEcCCCC----eE-eeeeeecCC--EEEEEcCCCceeeEEEEcC
Q 028009 68 PGIDFTVTSPAGN----VV-HTVKGTSGD--KFEFKAPRSGMYKFCFNNP 110 (215)
Q Consensus 68 ~~i~~~I~~p~g~----~l-~~~~~~~~g--~f~f~~~~~G~y~iCf~n~ 110 (215)
..+.+.|.+|++. .+ ..-.+...| ..+|+++..|.|++++.-.
T Consensus 42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~ 91 (101)
T PF00630_consen 42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN 91 (101)
T ss_dssp SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence 4678999999886 33 233344566 5677889999999988643
No 11
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=85.88 E-value=1.4 Score=32.66 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=21.9
Q ss_pred EEcCCCceeeEEEEcCCCC--CeEEEEEE
Q 028009 95 FKAPRSGMYKFCFNNPYST--PETVSFYI 121 (215)
Q Consensus 95 f~~~~~G~y~iCf~n~~~~--~~~V~f~i 121 (215)
++.+..|.|-++|+|+.|- .|++.+.+
T Consensus 105 ~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V 133 (136)
T PF13897_consen 105 HTCPGPGVYVLKFDNSYSWFRSKKLYYRV 133 (136)
T ss_pred EECCCCeEEEEEeeCcceeEEeeEEEEEE
Confidence 4558999999999999984 67777654
No 12
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=82.86 E-value=6.8 Score=27.63 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCCeeEEEEcCCCCeEeeeeeec--CCEEEE--EcCCCceeeEEEEcCCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTS--GDKFEF--KAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~--~g~f~f--~~~~~G~y~iCf~n~~~ 112 (215)
..++.++|.|.+|+++|+..-.. .....+ ....+|.|.+=+.+...
T Consensus 47 ~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g 96 (106)
T PF11589_consen 47 IGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG 96 (106)
T ss_dssp -SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred CCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence 35699999999999999875322 333444 45679999999998876
No 13
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=80.08 E-value=4.2 Score=25.98 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=35.8
Q ss_pred CeeEEEEcCCCCeEee--eeeecCCEEEEEcCCCceeeEEEEcCCC
Q 028009 69 GIDFTVTSPAGNVVHT--VKGTSGDKFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 69 ~i~~~I~~p~g~~l~~--~~~~~~g~f~f~~~~~G~y~iCf~n~~~ 112 (215)
++.|.|++.++..... ..-...|.+.|.-...|.|.+=......
T Consensus 3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~ 48 (70)
T PF05738_consen 3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPD 48 (70)
T ss_dssp TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTT
T ss_pred CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCC
Confidence 5789999988887775 4456789999998899999999887544
No 14
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=79.38 E-value=15 Score=24.00 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=9.4
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 028009 138 LDPINVKIAELREALESVVSE 158 (215)
Q Consensus 138 ~~~l~~~l~~l~~~l~~i~~~ 158 (215)
+..++..++++.+.++.+...
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~ 28 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKR 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 15
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=78.53 E-value=30 Score=27.05 Aligned_cols=54 Identities=20% Similarity=0.378 Sum_probs=35.6
Q ss_pred CeeEEEEcCCCCeEee-eeeecCCEEEEEc---CCCceeeEEEEcCCCCCeEEEEEEE
Q 028009 69 GIDFTVTSPAGNVVHT-VKGTSGDKFEFKA---PRSGMYKFCFNNPYSTPETVSFYIH 122 (215)
Q Consensus 69 ~i~~~I~~p~g~~l~~-~~~~~~g~f~f~~---~~~G~y~iCf~n~~~~~~~V~f~i~ 122 (215)
...+.+.+|+|+.+.. ..+.......+.. .+.|.+.+.+.|..+.+..+.+.+.
T Consensus 42 ~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~~q~v~vtVt 99 (179)
T PF09315_consen 42 PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSSSQTVTVTVT 99 (179)
T ss_pred CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCCcceEEEEEE
Confidence 4678899999998866 2333334444443 4689999988877765555555443
No 16
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=77.88 E-value=14 Score=24.65 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=32.3
Q ss_pred cEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeee--eecCCEEEEEc---------CCCceeeEEEE
Q 028009 48 DTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVK--GTSGDKFEFKA---------PRSGMYKFCFN 108 (215)
Q Consensus 48 ~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~--~~~~g~f~f~~---------~~~G~y~iCf~ 108 (215)
..+.+.|.+... -..+.+.|+|.+|++|.+.. ..+.|.+.|.. -.+|.|.+=+.
T Consensus 12 ~~~~~~~~l~~~-------a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~ 76 (81)
T PF13860_consen 12 TKGSIEYTLPED-------ADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVT 76 (81)
T ss_dssp CEEEEEEEECSS-------CEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEE
T ss_pred EEEEEEEeCCCc-------ccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEE
Confidence 367777776432 23689999999999998743 22345555543 23566665443
No 17
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=77.34 E-value=33 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.479 Sum_probs=23.8
Q ss_pred eeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEc
Q 028009 39 VYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTS 76 (215)
Q Consensus 39 F~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~ 76 (215)
.-..+. .|+.+.+.|.+-+.| +..-.+++|.|
T Consensus 30 l~~~~v-~g~~v~V~~~iyN~G-----~~~A~dV~l~D 61 (181)
T PF05753_consen 30 LNKYLV-EGEDVTVTYTIYNVG-----SSAAYDVKLTD 61 (181)
T ss_pred cccccc-CCcEEEEEEEEEECC-----CCeEEEEEEEC
Confidence 334555 488999999998865 24578899988
No 18
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=76.16 E-value=10 Score=24.77 Aligned_cols=45 Identities=29% Similarity=0.477 Sum_probs=31.4
Q ss_pred CCeeEEEEcCCCCeEeeeeeecCCEEEEEcCCCceeeEEEEcCCC
Q 028009 68 PGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 68 ~~i~~~I~~p~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~ 112 (215)
.+..+.+.++++.......-...|.|.|.....|.|.+=+.....
T Consensus 15 ~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~ 59 (82)
T PF13620_consen 15 PGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGY 59 (82)
T ss_dssp TT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTE
T ss_pred CCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCc
Confidence 478889988888777766667899999985566999999876664
No 19
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=71.39 E-value=10 Score=25.62 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=13.6
Q ss_pred CCCeeEEEEcCCCCeEeeeee
Q 028009 67 HPGIDFTVTSPAGNVVHTVKG 87 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~ 87 (215)
....++.|+|++|+.++.+..
T Consensus 23 gq~~D~~v~d~~g~~vwrwS~ 43 (82)
T PF12690_consen 23 GQRYDFVVKDKEGKEVWRWSD 43 (82)
T ss_dssp S--EEEEEE-TT--EEEETTT
T ss_pred CCEEEEEEECCCCCEEEEecC
Confidence 567999999999999998753
No 20
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=70.68 E-value=22 Score=27.13 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=10.6
Q ss_pred CCCeeEEEEcCCCCe
Q 028009 67 HPGIDFTVTSPAGNV 81 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~ 81 (215)
...+.|.|+|..+.+
T Consensus 71 ~~~v~F~vtD~~~~v 85 (155)
T PRK13159 71 SLKVSFTVIDKNAAT 85 (155)
T ss_pred CcEEEEEEEcCCcEE
Confidence 346889999875553
No 21
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=70.44 E-value=22 Score=22.20 Aligned_cols=44 Identities=18% Similarity=0.347 Sum_probs=29.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 028009 137 HLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180 (215)
Q Consensus 137 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 180 (215)
+++.|...++.|...+..+..+..-++.--..-.+-+...+.|+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888887777654444444444555554
No 22
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=68.78 E-value=22 Score=28.89 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=38.5
Q ss_pred CcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeecCCEEEEEc---------CCCceeeEEEEcCCC
Q 028009 47 GDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKA---------PRSGMYKFCFNNPYS 112 (215)
Q Consensus 47 ~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~~g~f~f~~---------~~~G~y~iCf~n~~~ 112 (215)
+..+.+.|...+. -..+.+.|+|.+|++++...- ..|.+.|.. ..+|.|.+=+.-...
T Consensus 110 g~~~~~~~~l~~~-------a~~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~~~ 176 (223)
T PRK12813 110 GTPVTISPNPAAD-------ADKAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESYSG 176 (223)
T ss_pred CceeEEEEeccCC-------CceEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEEeC
Confidence 3356677765432 246999999999999977543 445444443 246899998876543
No 23
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=68.65 E-value=20 Score=29.16 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=37.6
Q ss_pred EEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeee--eecCCEEEEEc---------CCCceeeEEEEcC
Q 028009 49 TVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVK--GTSGDKFEFKA---------PRSGMYKFCFNNP 110 (215)
Q Consensus 49 ~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~--~~~~g~f~f~~---------~~~G~y~iCf~n~ 110 (215)
...+.|...+. -..+.+.|+|.+|++|++.. ....|.+.|.. ..+|.|.+=+...
T Consensus 114 ~~~~~~~l~~~-------a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~ 179 (225)
T PRK06655 114 TTPFGVELPSA-------ADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS 179 (225)
T ss_pred ceEEEEEcCCC-------CcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence 45566665322 24699999999999998643 24567777743 3478999888654
No 24
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=67.34 E-value=50 Score=27.48 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=37.8
Q ss_pred EEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeee--eecCCEEEEEcC---------CCceeeEEEEcC
Q 028009 49 TVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVK--GTSGDKFEFKAP---------RSGMYKFCFNNP 110 (215)
Q Consensus 49 ~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~--~~~~g~f~f~~~---------~~G~y~iCf~n~ 110 (215)
.+.+.|.+... -..+.+.|+|.+|++|+... ....|.+.|... .+|.|.+=+...
T Consensus 129 ~~~~~~~l~~~-------a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~ 194 (259)
T PRK12812 129 LIALKLYFPED-------SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYN 194 (259)
T ss_pred eeEEEEecCCc-------CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEE
Confidence 46666665322 24699999999999998653 334676666542 378999999743
No 25
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=66.06 E-value=2.7 Score=28.72 Aligned_cols=28 Identities=25% Similarity=0.346 Sum_probs=21.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhcceEE
Q 028009 2 EKRQRHRYVATYMILALLMSLIGRLSSL 29 (215)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l 29 (215)
-.+||+++++.++++.+++++.....++
T Consensus 23 sp~~R~~vvl~ml~~fa~l~ly~~~~ai 50 (85)
T PF13150_consen 23 SPKQRLRVVLVMLVLFAALCLYMTVSAI 50 (85)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999888888766655554
No 26
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=65.26 E-value=49 Score=23.82 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=46.2
Q ss_pred ceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCC-CeEeee--eeec-CCEEEEEc---CCCceeeEEEEc
Q 028009 37 ECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAG-NVVHTV--KGTS-GDKFEFKA---PRSGMYKFCFNN 109 (215)
Q Consensus 37 eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g-~~l~~~--~~~~-~g~f~f~~---~~~G~y~iCf~n 109 (215)
-|..+++..-+ --++|+. +|+ ..-|.|+|.+- +++|+. .++- ...|+... +...+|-+||..
T Consensus 40 FcVs~Die~L~--aEv~f~m-DGe--------~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V~ftG 108 (132)
T PF15417_consen 40 FCVSEDIEALD--AEVYFQM-DGE--------SGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVVCFTG 108 (132)
T ss_pred EEEecchheee--eEEEEEE-cCc--------cceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEEEEec
Confidence 48888887533 3334443 443 35678988754 466653 2222 33566543 455699999998
Q ss_pred CCCCCeEEEEEEEEc
Q 028009 110 PYSTPETVSFYIHVG 124 (215)
Q Consensus 110 ~~~~~~~V~f~i~~~ 124 (215)
..-....|.+.|+.+
T Consensus 109 tkInhAvv~vtFeS~ 123 (132)
T PF15417_consen 109 TKINHAVVKVTFESE 123 (132)
T ss_pred cEeeeEEEEEEecch
Confidence 876555666655543
No 27
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=62.45 E-value=35 Score=21.18 Aligned_cols=41 Identities=5% Similarity=0.061 Sum_probs=24.3
Q ss_pred CeeEEEEcCCCCeEeeeeeecCC-EEEEEcCCCceeeEEEEcCCC
Q 028009 69 GIDFTVTSPAGNVVHTVKGTSGD-KFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 69 ~i~~~I~~p~g~~l~~~~~~~~g-~f~f~~~~~G~y~iCf~n~~~ 112 (215)
.....+.+.+++-+.... .. .++|+...+|.|++-+.....
T Consensus 9 ~Y~Y~l~g~d~~W~~~~~---~~~~~~~~~L~~G~Y~l~V~a~~~ 50 (66)
T PF07495_consen 9 RYRYRLEGFDDEWITLGS---YSNSISYTNLPPGKYTLEVRAKDN 50 (66)
T ss_dssp EEEEEEETTESSEEEESS---TS-EEEEES--SEEEEEEEEEEET
T ss_pred EEEEEEECCCCeEEECCC---CcEEEEEEeCCCEEEEEEEEEECC
Confidence 344455555555333222 22 899999999999998876553
No 28
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=62.43 E-value=29 Score=23.73 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=25.9
Q ss_pred cccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeee
Q 028009 43 VIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTV 85 (215)
Q Consensus 43 v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~ 85 (215)
-|.+++.+...+.|.+....+ +..+.+.|.|.+|+++.+.
T Consensus 7 ~P~pg~~V~sp~~V~G~A~~F---Egtv~~rv~D~~g~vl~e~ 46 (88)
T PF10648_consen 7 APAPGDTVSSPVKVSGKARVF---EGTVNIRVRDGHGEVLAEG 46 (88)
T ss_pred CCCCcCCcCCCEEEEEEEEEe---eeEEEEEEEcCCCcEEEEe
Confidence 344566666666665432211 4579999999999998543
No 29
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=62.41 E-value=58 Score=30.91 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=32.2
Q ss_pred eeEEEEcCCCCeEeeeeeecCCEEEEEcCCCceeeEEEEcCC--CC-----CeEEEEEEE
Q 028009 70 IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPY--ST-----PETVSFYIH 122 (215)
Q Consensus 70 i~~~I~~p~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~--~~-----~~~V~f~i~ 122 (215)
..+.|+. +|+.+....-.....+.|++..+|.|++=++-.+ +. .+.|+|.+.
T Consensus 418 Y~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~ 476 (667)
T PRK14081 418 YSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH 476 (667)
T ss_pred EEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence 3344444 5555554444456689999999999977665554 42 456666554
No 30
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=61.82 E-value=8.8 Score=24.15 Aligned_cols=19 Identities=42% Similarity=0.724 Sum_probs=13.9
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q 028009 3 KRQRHRYVATYMILALLMS 21 (215)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (215)
||||.-++.++.++++++.
T Consensus 38 ~R~r~~~~~~~li~aLi~v 56 (64)
T COG4068 38 KRQRNFMILMFLILALILV 56 (64)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6788888888887776443
No 31
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=61.72 E-value=70 Score=26.21 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028009 182 GYTIGEYVLLAMASALQVLYIRKLF 206 (215)
Q Consensus 182 ~~sii~i~vli~~~~~Qv~~lk~fF 206 (215)
||..+=+ +++++.++-++.+-|+|
T Consensus 228 ~~~~~~i-~~v~~~Fi~mvl~iri~ 251 (251)
T PF09753_consen 228 CWTWLMI-FVVIIVFIMMVLFIRIF 251 (251)
T ss_pred HHHHHHH-HHHHHHHHHHHHHheeC
Confidence 5555533 33444455555554443
No 32
>PRK15396 murein lipoprotein; Provisional
Probab=60.90 E-value=43 Score=22.45 Aligned_cols=45 Identities=11% Similarity=0.310 Sum_probs=32.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 028009 136 EHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180 (215)
Q Consensus 136 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 180 (215)
.+++.+...++.|+..+..+..+..-++.--..-.+-.+..|.|+
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888887777665555555555666664
No 33
>PHA03376 BARF1; Provisional
Probab=60.54 E-value=86 Score=25.05 Aligned_cols=81 Identities=7% Similarity=0.101 Sum_probs=43.4
Q ss_pred HhhcceEEEEEeCC---cceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeecC--------
Q 028009 22 LIGRLSSLSVTVND---VECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSG-------- 90 (215)
Q Consensus 22 ~~~~~~~l~f~l~~---~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~~-------- 90 (215)
++.++.+++-.+++ --|-+-.... ...+.+.+.=...+ +..+-+.+.+ +++++.+- +-.
T Consensus 14 l~~sg~pVta~VGEda~LsC~lnp~ss-a~~MrIrWqKs~p~------~~~VvL~~~g--gdVv~~Qm-EyRGrtD~~~~ 83 (221)
T PHA03376 14 CVAAGQAVTAFLGERVTLTSYWRRVSL-GPEIEVSWFKLGPG------EEQVLIGRMH--HDVIFIEW-PFRGFFDIHRS 83 (221)
T ss_pred HhccCcchhheeCCcEEEEecccCccC-CCceEEEEEecCCC------CCCEEEEEcC--Ceeeeeee-ccccEEEEEec
Confidence 33555566666764 3699986654 45566655532221 2334444422 22332222 222
Q ss_pred -CEEEE-----EcCCCceeeEEEEcCCC
Q 028009 91 -DKFEF-----KAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 91 -g~f~f-----~~~~~G~y~iCf~n~~~ 112 (215)
|+++. ++.+.|+|..+|.-...
T Consensus 84 ~gnvsLvI~~l~lSDdGtY~C~fQkge~ 111 (221)
T PHA03376 84 ANTFFLVVTAANISHDGNYLCRMKLGET 111 (221)
T ss_pred CCeEEEEEEeeeecCCceEEEEEEcCCC
Confidence 54444 35689999999976664
No 34
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.50 E-value=55 Score=26.80 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=14.7
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHH
Q 028009 135 DEHLDPINVKIAELREALESVVSE 158 (215)
Q Consensus 135 ~~~~~~l~~~l~~l~~~l~~i~~~ 158 (215)
++.++.++.++.++...-..+-.|
T Consensus 151 De~Ld~ls~ti~rlk~~a~~~g~E 174 (235)
T KOG3202|consen 151 DEGLDGLSATVQRLKGMALAMGEE 174 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 356777777776666555555443
No 35
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=60.46 E-value=40 Score=28.61 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=38.1
Q ss_pred EEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeee----cCCEEEEEc---------CCCceeeEEEEcC
Q 028009 49 TVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGT----SGDKFEFKA---------PRSGMYKFCFNNP 110 (215)
Q Consensus 49 ~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~----~~g~f~f~~---------~~~G~y~iCf~n~ 110 (215)
.+.+.|.+..... .+...+.+.|+|.+|++|++-... ..|.+.|.. ..+|.|.|=+...
T Consensus 150 ~~~~~~~l~~~~~---~~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a~ 221 (295)
T PRK05842 150 KLSFSLFFDEKID---ASKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEYN 221 (295)
T ss_pred ceEEEEecccccc---ccCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 4556665532110 123479999999999999875422 347777763 3468999988654
No 36
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=59.22 E-value=58 Score=26.35 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=32.5
Q ss_pred CCCeeEEEEcCCCCeEeeee--eecCCEEEEEcC---------CCceeeEEEEcC
Q 028009 67 HPGIDFTVTSPAGNVVHTVK--GTSGDKFEFKAP---------RSGMYKFCFNNP 110 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~--~~~~g~f~f~~~---------~~G~y~iCf~n~ 110 (215)
...+.+.|+|.+|++++... ....|.+.|... .+|.|.+-+.-.
T Consensus 121 a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a~ 175 (221)
T PRK12634 121 AGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQT 175 (221)
T ss_pred CCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEEE
Confidence 35689999999999998753 345677777642 368999999643
No 37
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.32 E-value=87 Score=27.55 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.3
Q ss_pred CCCeeEEEEcCCCCeEeeee
Q 028009 67 HPGIDFTVTSPAGNVVHTVK 86 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~ 86 (215)
...+.++|.+|++..+....
T Consensus 69 ~etV~Vtl~G~ns~~~~~~~ 88 (403)
T COG4856 69 PETVTVTLKGPNSIVLKSEK 88 (403)
T ss_pred ceEEEEEEeCCcceeeeeec
Confidence 56799999999998887654
No 38
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=57.18 E-value=59 Score=22.11 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=41.3
Q ss_pred CcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeecCCEEEEEcCCCceeeEEEEcCCC
Q 028009 47 GDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 47 ~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~ 112 (215)
...|+|... ..+.+ -.+--+.+.|++|+.--+-.-..+|+|.|.+ .+|.+.+=.-.+..
T Consensus 7 e~VItG~V~--~~G~P----v~gAyVRLLD~sgEFtaEvvts~~G~FRFfa-apG~WtvRal~~~g 65 (85)
T PF07210_consen 7 ETVITGRVT--RDGEP----VGGAYVRLLDSSGEFTAEVVTSATGDFRFFA-APGSWTVRALSRGG 65 (85)
T ss_pred eEEEEEEEe--cCCcC----CCCeEEEEEcCCCCeEEEEEecCCccEEEEe-CCCceEEEEEccCC
Confidence 345767544 33321 3467789999999976665667899999988 77888877666654
No 39
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=57.04 E-value=11 Score=27.78 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=18.9
Q ss_pred CcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCC
Q 028009 47 GDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGN 80 (215)
Q Consensus 47 ~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~ 80 (215)
+..+.+.=.|..|...+.++...+.|.|.|.+..
T Consensus 50 ~~~vrv~G~V~~gSv~~~~~~~~~~F~i~D~~~~ 83 (131)
T PF03100_consen 50 GRKVRVGGLVVEGSVEYDPDGNTLTFTITDGGKE 83 (131)
T ss_dssp TSEEEEEEEEECTTEEE-TTSSEEEEEEE-SS-E
T ss_pred CceEEEeeEEccCCEEEcCCCCEEEEEEEECCcE
Confidence 5555555556544333333467899999987544
No 40
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=56.92 E-value=86 Score=25.53 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=32.5
Q ss_pred CCeeEEEEcCCCCeEeeee--eecCCEEEEEc---------CCCceeeEEEEcCC
Q 028009 68 PGIDFTVTSPAGNVVHTVK--GTSGDKFEFKA---------PRSGMYKFCFNNPY 111 (215)
Q Consensus 68 ~~i~~~I~~p~g~~l~~~~--~~~~g~f~f~~---------~~~G~y~iCf~n~~ 111 (215)
..+.+.|+|.+|++++... ....|.+.|.. -.+|.|++=+.-..
T Consensus 129 ~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a~~ 183 (230)
T PRK12633 129 TKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSASD 183 (230)
T ss_pred cEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEEEe
Confidence 4699999999999998753 34567667764 24689999997543
No 41
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=56.10 E-value=64 Score=24.77 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=17.9
Q ss_pred CcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeE
Q 028009 47 GDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVV 82 (215)
Q Consensus 47 ~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l 82 (215)
+..+.+.=.|..|.-...++...+.|.|+|....+-
T Consensus 57 g~~iRvgG~V~~GSi~r~~~~l~v~F~vtD~~~~v~ 92 (160)
T PRK13165 57 GQRLRVGGMVMPGSVQRDPNSLKVSFTLYDAGGSVT 92 (160)
T ss_pred CCEEEEeeEEeCCcEEECCCCeEEEEEEEcCCeEEE
Confidence 455554434443321111123458899988755543
No 42
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=54.71 E-value=59 Score=22.19 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=39.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHH
Q 028009 136 EHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEY 188 (215)
Q Consensus 136 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~sii~i 188 (215)
.+++.+...++.|+..+..+..+..-.+.--..-.+.++..|.|+=.--.+.+
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~~~~~ 76 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDYFDC 76 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 47788889999999999999888877776666666677777888655444443
No 43
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=54.13 E-value=63 Score=24.46 Aligned_cols=58 Identities=14% Similarity=0.035 Sum_probs=26.0
Q ss_pred HHhhcceEEEEEeCCcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCC
Q 028009 21 SLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGN 80 (215)
Q Consensus 21 ~~~~~~~~l~f~l~~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~ 80 (215)
.+....+.+.+.+.-.+-.-.... .+..+.+.=.|..+.-.+. +...+.|.|.|.+..
T Consensus 26 ~~~a~~~~~~yf~tpse~~~~~~~-~g~~vrvgG~V~~gSi~~~-~~~~~~F~ltD~~~~ 83 (148)
T PRK13254 26 VLYALRQNIVFFYTPSEVAEGEAP-AGRRFRLGGLVEKGSVQRG-DGLTVRFVVTDGNAT 83 (148)
T ss_pred HHHHHHhCCceeeCHHHHhcCCcc-CCCeEEEeEEEecCcEEeC-CCCEEEEEEEeCCeE
Confidence 344556666665531111111122 2444443333433321111 245689999997544
No 44
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=53.92 E-value=88 Score=24.00 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=19.7
Q ss_pred CcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEee
Q 028009 47 GDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHT 84 (215)
Q Consensus 47 ~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~ 84 (215)
+..+.+.=.|..|.-...++...+.|.|+|..+.+-..
T Consensus 57 g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~ 94 (159)
T PRK13150 57 GQRLRVGGMVMPGSVRRDPDSLKVNFSLYDAEGSVTVS 94 (159)
T ss_pred CCEEEEeeEEeCCcEEECCCCcEEEEEEEcCCcEEEEE
Confidence 55555443444332111112346899999976664433
No 45
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.79 E-value=37 Score=30.05 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028009 141 INVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLY 201 (215)
Q Consensus 141 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~sii~i~vli~~~~~Qv~~ 201 (215)
+..+++-|+.+++.+.+..+.++. .++++...++-||-|+-|++-++..++|++.
T Consensus 338 I~qRv~vLN~kl~~i~~~~~~l~e------~ln~r~~~~LEWiIIiLI~~eV~i~i~~i~~ 392 (399)
T KOG2861|consen 338 IGQRVNVLNYKLKVIEDLLDILQE------NLNERHSERLEWIIIILIAFEVAIEIYQIVV 392 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH------HhhhccccceehhhHHHHHHHHHHHHHHHHH
Confidence 445567788888888888877754 3566778889999999999999999998764
No 46
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=52.82 E-value=19 Score=19.36 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=13.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhcc
Q 028009 5 QRHRYVATYMILALLMSLIGRL 26 (215)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (215)
..||.+...++++.+++++-++
T Consensus 8 ~~Hr~~l~~l~~v~l~ll~~Ps 29 (30)
T PF08525_consen 8 KLHRRALIALSAVVLVLLLWPS 29 (30)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 3588777777666655554443
No 47
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=52.57 E-value=45 Score=33.06 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=34.8
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~ 112 (215)
..++.+.+.||.|...--. .....| +..|++.+.|.|.+|+.+..-
T Consensus 882 ~~d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G~~tl~V~y~~~ 930 (1113)
T KOG0518|consen 882 SQDITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPGNHTLSVKYKDQ 930 (1113)
T ss_pred ccceEEEeeCCCCCccccEEEECCCceEEEEecCCCCCceEEEEEecCc
Confidence 5688999999998854332 122334 678899999999999999885
No 48
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=50.40 E-value=49 Score=19.52 Aligned_cols=28 Identities=21% Similarity=0.063 Sum_probs=15.2
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028009 169 HRHTNESTRKRLLGYTIGEYVLLAMASA 196 (215)
Q Consensus 169 ~~~~~es~~~rv~~~sii~i~vli~~~~ 196 (215)
|.++-+.--.-..|.+++-+++++++++
T Consensus 14 he~Ty~gFi~~~k~~~~~~~~~li~lai 41 (44)
T PF07835_consen 14 HEKTYDGFIKLTKWGTIAIAAILIFLAI 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455666666666666655
No 49
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=49.96 E-value=27 Score=29.82 Aligned_cols=55 Identities=24% Similarity=0.197 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028009 141 INVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLY 201 (215)
Q Consensus 141 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~sii~i~vli~~~~~Qv~~ 201 (215)
+..+++-|+.+++-|.+..+.+. ..++++...++-||-|+-|++-+++++++++.
T Consensus 271 I~~RvnvLN~Rl~vi~d~l~il~------e~ln~~~s~~lEWivIiLI~~eVllsl~~i~~ 325 (331)
T COG1723 271 INPRVNVLNRRLEVISDLLDILN------EQLNHSHSTRLEWIVIILIGLEVLLSLYNIIV 325 (331)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH------HHhhhcccceeEEEehhHHHHHHHHHHHHHHH
Confidence 44556667777777777665543 34667888899999999999999999988764
No 50
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=48.85 E-value=1.4e+02 Score=24.05 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=33.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-hHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 028009 136 EHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTR-KRLLG----YTIGEYVLLAMASALQVLYIR 203 (215)
Q Consensus 136 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~-~rv~~----~sii~i~vli~~~~~Qv~~lk 203 (215)
++++.++.++.+++-.+..++...+-.+.|-..---..-... +.+.| |+=.+.+.+.+++.+.+|+.|
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l~~S~iy~~~~~y~~~~~It~~llgs~slymfr 87 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVLALSYIYWEYHGYRPYLVITALLLGSGSLYMFR 87 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhHHHHHH
Confidence 455667777777766666666655555554433222222221 22333 333344444444455555544
No 51
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=46.48 E-value=75 Score=25.66 Aligned_cols=57 Identities=18% Similarity=0.350 Sum_probs=37.5
Q ss_pred cEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeee--eecCCEEEEEc------CCCceeeEEEEcCCC
Q 028009 48 DTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVK--GTSGDKFEFKA------PRSGMYKFCFNNPYS 112 (215)
Q Consensus 48 ~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~--~~~~g~f~f~~------~~~G~y~iCf~n~~~ 112 (215)
....+.|.+.+. -..+.+.|+|.+|++ +... ....|.+.|.. -.+|.|++=+.....
T Consensus 110 ~~~~~~~~L~~~-------a~~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a~~g 174 (218)
T PRK09619 110 DPVAGRLTLKHP-------APTLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVSGSG 174 (218)
T ss_pred CeeEEEEecCCc-------CcEEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEEeCC
Confidence 345666765322 246999999999996 4332 23557777764 357899999976543
No 52
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.14 E-value=1.5e+02 Score=23.64 Aligned_cols=152 Identities=9% Similarity=0.025 Sum_probs=75.9
Q ss_pred hcceEEEEEeCCcce---eeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeecCCEEEEEc-CC
Q 028009 24 GRLSSLSVTVNDVEC---VYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKA-PR 99 (215)
Q Consensus 24 ~~~~~l~f~l~~~eC---F~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~~g~f~f~~-~~ 99 (215)
..-++++-++.+..| |...|- .|..+-+.|.+.+++ +..|--.=....++..+..+ ..|.+.|=- .+
T Consensus 31 ~aKqC~Y~d~~~~~~~~~~~fqV~-tGG~fDVD~~I~aPd------gkvI~~~~kk~~~~~~f~ae--~~G~Y~fCFsN~ 101 (209)
T KOG1693|consen 31 NAKQCFYEDLKKDDDTTSFEFQVQ-TGGHFDVDYDIEAPD------GKVIYSEKKKRYDSFLFKAE--GKGEYTFCFSNE 101 (209)
T ss_pred cchhheeeecccCCceEEEEEEEE-eCCceeeEEEEECCC------CCEEeeccccccccEEEEEe--cceEEEEEecCc
Confidence 345788888864443 445555 487777788876553 11111111122344555444 345554421 11
Q ss_pred Cc--eee-EEEEcCCCC----CeEEEEEEEEccCCCCCcccccCCCchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhH
Q 028009 100 SG--MYK-FCFNNPYST----PETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVV--SEQKYLRARDTRHR 170 (215)
Q Consensus 100 ~G--~y~-iCf~n~~~~----~~~V~f~i~~~~~~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~--~~q~~~~~re~~~~ 170 (215)
-| .++ .-+++.... +..+ + ..+.....-..-+..+.+.|+.+.+.....+ +.+.+.+.-...+|
T Consensus 102 fstf~~Kiv~~~~q~~~~~~~~~~~------~-~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~tv~st~~R 174 (209)
T KOG1693|consen 102 FSTFSHKIVYMDFQVGEEPPLHPAV------S-NRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRSTVESTNSR 174 (209)
T ss_pred cccccceEeeehhhhccccccCccc------c-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhcccch
Confidence 11 111 112333221 1111 1 1111111112334667777877777776654 45667777777788
Q ss_pred HHHHHHhhHH--HHHHHHHHHHH
Q 028009 171 HTNESTRKRL--LGYTIGEYVLL 191 (215)
Q Consensus 171 ~~~es~~~rv--~~~sii~i~vl 191 (215)
-+.-|....+ ...|+.|++++
T Consensus 175 v~~~Sl~e~~~vv~iSi~Qv~il 197 (209)
T KOG1693|consen 175 VTWWSLLEIIAVVVISIAQVFIL 197 (209)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776664 44466666554
No 53
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=45.95 E-value=86 Score=27.58 Aligned_cols=68 Identities=24% Similarity=0.441 Sum_probs=34.9
Q ss_pred eEEEEEeCCcceeeE--ecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeecC---CEEEEEcCCCc
Q 028009 27 SSLSVTVNDVECVYE--YVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSG---DKFEFKAPRSG 101 (215)
Q Consensus 27 ~~l~f~l~~~eCF~e--~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~~---g~f~f~~~~~G 101 (215)
..+.+.+....|--. .++. |. ..+.|.+.+ .....+.+.++ +.++-..++-.- +.+.++. .+|
T Consensus 30 ~~v~Vti~d~~c~p~~~tVpA-G~---~~f~V~N~~------~~~~Efe~~~~-~~vv~e~EnIaPG~s~~l~~~L-~pG 97 (375)
T PRK10378 30 PQVKVTVNDKQCEPMTLTVNA-GK---TQFIIQNHS------QKALEWEILKG-VMVVEERENIAPGFSQKMTANL-QPG 97 (375)
T ss_pred CceEEEEECCccccCceeeCC-CC---EEEEEEeCC------CCcceEEeecc-ccccccccccCCCCceEEEEec-CCc
Confidence 345666666677653 4442 43 345555543 23456666642 222222222222 2454444 799
Q ss_pred eeeE-E
Q 028009 102 MYKF-C 106 (215)
Q Consensus 102 ~y~i-C 106 (215)
+|.+ |
T Consensus 98 tY~~~C 103 (375)
T PRK10378 98 EYDMTC 103 (375)
T ss_pred eEEeec
Confidence 9987 9
No 54
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=43.87 E-value=2.3e+02 Score=25.00 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=24.2
Q ss_pred CCeeEEEEcCCCCeEeeeeeecCCEEEEE---cCCCceeeEEE
Q 028009 68 PGIDFTVTSPAGNVVHTVKGTSGDKFEFK---APRSGMYKFCF 107 (215)
Q Consensus 68 ~~i~~~I~~p~g~~l~~~~~~~~g~f~f~---~~~~G~y~iCf 107 (215)
-.+++.+..|+|..........++...+. ..+.|.|++-.
T Consensus 242 ~~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~ 284 (374)
T TIGR03503 242 LVIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKG 284 (374)
T ss_pred EEEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEE
Confidence 35777888999984444444444444443 34678887654
No 55
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=43.08 E-value=1.2e+02 Score=24.13 Aligned_cols=58 Identities=5% Similarity=0.001 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------HhhHHHHHHHHHHHHHHHHHHH
Q 028009 140 PINVKIAELREALESVVSEQKYLRARDTRHRHTNES------TRKRLLGYTIGEYVLLAMASAL 197 (215)
Q Consensus 140 ~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es------~~~rv~~~sii~i~vli~~~~~ 197 (215)
.-+.+++.+.+.+..+..+..-.+++........++ -.....|...+.++++++++++
T Consensus 105 ~W~~~i~~~~~~i~~ll~~a~~qqe~n~~~l~~Ld~w~~l~~wfdit~W~~~Iki~i~iv~~iI 168 (204)
T PF00517_consen 105 QWEKEISNYTGNIYNLLEEAQNQQEKNEQDLLKLDSWTNLWSWFDITKWLWYIKIFIMIVIGII 168 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHCHHHHHHHHHH---------
T ss_pred HHHHHhcccHHHHHHHHHHHHhchhhhhhhhcCCcHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 355667666666666666544444444444444444 3444556666777666665554
No 56
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=43.04 E-value=12 Score=17.69 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHH
Q 028009 9 YVATYMILALLMS 21 (215)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (215)
||.+.|++..|++
T Consensus 1 MMk~vIIlvvLLl 13 (19)
T PF13956_consen 1 MMKLVIILVVLLL 13 (19)
T ss_pred CceehHHHHHHHh
Confidence 4555666555443
No 57
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=41.29 E-value=61 Score=23.22 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=24.1
Q ss_pred CcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeee
Q 028009 35 DVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTV 85 (215)
Q Consensus 35 ~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~ 85 (215)
...++...+.+ |...-+..-...++ ....++++|++|+|..+...
T Consensus 58 ~~~~~tv~L~a-G~yyPiRi~~~N~~-----g~~~~~~~i~~P~G~~~~~~ 102 (113)
T PF10528_consen 58 ASKSVTVYLTA-GTYYPIRIVYANGG-----GPGSFDFSITDPDGTVHTDD 102 (113)
T ss_dssp SEEEEEEEE-T-T-BEEEEEEEEE-S-----S-EEEEEEEEETT-S--B--
T ss_pred CceEEEEEEEC-CcEEEEEEEEEcCC-----CceEEEEEEECCCCcEEecC
Confidence 34577777774 77654444444443 24579999999999988664
No 58
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=40.32 E-value=1.1e+02 Score=20.14 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=30.4
Q ss_pred CCeeEEEEcCCCCeEeeeeeecCCEEEEEcCCCceeeEEEEcCCCCCeEEEEE
Q 028009 68 PGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFY 120 (215)
Q Consensus 68 ~~i~~~I~~p~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~~~~~V~f~ 120 (215)
.++.+.+.+++ ... .-...|.|.+.. ..|.|.+-|+-..-.++.+.+.
T Consensus 16 ~~a~V~~~~~~---~~~-~Td~~G~F~i~~-~~g~~~l~is~~Gy~~~~~~i~ 63 (88)
T PF13715_consen 16 PGATVYLKNTK---KGT-VTDENGRFSIKL-PEGDYTLKISYIGYETKTITIS 63 (88)
T ss_pred cCeEEEEeCCc---ceE-EECCCeEEEEEE-cCCCeEEEEEEeCEEEEEEEEE
Confidence 35666666554 111 224689999995 5899999998777544444443
No 59
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=39.82 E-value=49 Score=25.72 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=28.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028009 175 STRKRLLGYTIGEYVLLAMASALQVLYIRKLFSK 208 (215)
Q Consensus 175 s~~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~ 208 (215)
=.+-|..+++++-++++++++++|++.+-+--.+
T Consensus 26 YI~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 26 YIHPRYIPLLYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3567889999999999999999999986665544
No 60
>PF08234 Spindle_Spc25: Chromosome segregation protein Spc25; InterPro: IPR013255 This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex [], and in vertebrates it forms part of the Ndc80 complex []. ; PDB: 2VE7_B.
Probab=39.78 E-value=1.1e+02 Score=20.00 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=16.0
Q ss_pred CCCceeeEEEEcCCCC--CeEEEEEEEEcc
Q 028009 98 PRSGMYKFCFNNPYST--PETVSFYIHVGH 125 (215)
Q Consensus 98 ~~~G~y~iCf~n~~~~--~~~V~f~i~~~~ 125 (215)
...+..++.|.|-... .+..+|.+.++.
T Consensus 4 ~~~d~lkf~F~~id~~d~~re~s~~l~i~~ 33 (74)
T PF08234_consen 4 IGGDQLKFVFTNIDPNDPDREFSFTLDISS 33 (74)
T ss_dssp -STT-EEEEE-S-BTTBSSS-EEEEEE-SS
T ss_pred cCCceEEEEEeEcCCCCCCceEEEEEEECC
Confidence 3555688999888764 567888887765
No 61
>PHA02650 hypothetical protein; Provisional
Probab=39.73 E-value=47 Score=22.24 Aligned_cols=33 Identities=9% Similarity=-0.127 Sum_probs=22.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028009 174 ESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 206 (215)
Q Consensus 174 es~~~rv~~~sii~i~vli~~~~~Qv~~lk~fF 206 (215)
.+.+..-.+|-++-+++++++.++-..|||-.=
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~flYLK~~~ 74 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFSFFVFKGYT 74 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555566667777788888888888643
No 62
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=39.58 E-value=2.4e+02 Score=26.91 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=30.7
Q ss_pred CCCeEeeeeeecCCEEEEEcCCCceeeEEEEcCCC-------CCeEEEEEEE
Q 028009 78 AGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS-------TPETVSFYIH 122 (215)
Q Consensus 78 ~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~-------~~~~V~f~i~ 122 (215)
+|+.+..+.-.....++|.+..+|.|++=+..... ..+.|.|.+.
T Consensus 521 NG~~v~~t~Ys~~~~ysf~P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~ 572 (667)
T PRK14081 521 NGHKVEETDYIKNKKYKFIPKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVR 572 (667)
T ss_pred CCEEEEEeeccccceEEEeecCCceEEEEEEEcccccccccccceEEEEEEc
Confidence 34444444445677899999999999877765553 1467777766
No 63
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=37.29 E-value=59 Score=22.91 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=22.3
Q ss_pred EcCCCceeeEEEEcCCCCCeEEEEEEEE
Q 028009 96 KAPRSGMYKFCFNNPYSTPETVSFYIHV 123 (215)
Q Consensus 96 ~~~~~G~y~iCf~n~~~~~~~V~f~i~~ 123 (215)
+..+.|.|.+=..|... ...+.|++.+
T Consensus 73 k~~E~G~YTf~a~N~~~-~~s~tF~l~v 99 (101)
T cd05860 73 KGTEGGTYTFLVSNSDA-SASVTFNVYV 99 (101)
T ss_pred ChhhCcEEEEEEECCCC-eEEEEEEEEE
Confidence 45789999999999987 4788888776
No 64
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=37.17 E-value=64 Score=20.02 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 028009 178 KRLLGYTIGEYVLLAMASALQVLYIRKLFSKS 209 (215)
Q Consensus 178 ~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~K 209 (215)
.-++||+.+-+++.++.+.|- .+|.||++|
T Consensus 6 ~~lLyFctvVcaLYLvsGGyk--~IRnY~r~K 35 (59)
T PF07125_consen 6 TILLYFCTVVCALYLVSGGYK--VIRNYFRRK 35 (59)
T ss_pred HHHHHHHHHHHHHHHHhccHH--HHHHHHHHH
Confidence 346778888777777777764 478888876
No 65
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=36.38 E-value=1.1e+02 Score=19.08 Aligned_cols=28 Identities=11% Similarity=0.357 Sum_probs=19.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028009 138 LDPINVKIAELREALESVVSEQKYLRAR 165 (215)
Q Consensus 138 ~~~l~~~l~~l~~~l~~i~~~q~~~~~r 165 (215)
++.++..+.++...+..++.+.+-++..
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ 29 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISES 29 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777776665543
No 66
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=35.30 E-value=1.1e+02 Score=22.92 Aligned_cols=33 Identities=6% Similarity=0.053 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 028009 182 GYTIGEYVLLAMASALQVLYIRKLFSKSVAYNR 214 (215)
Q Consensus 182 ~~sii~i~vli~~~~~Qv~~lk~fF~~Kk~~~~ 214 (215)
..-+++++..+++.++.++.+..||++|+.+-|
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~lffkr~~~~P~ 86 (149)
T PF10754_consen 54 ALWYFEVAINIAMWLFTLWLLYLFFKRKRRFPK 86 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhHH
Confidence 444577788888889999999999999987654
No 67
>PHA01750 hypothetical protein
Probab=34.98 E-value=85 Score=20.26 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhc
Q 028009 179 RLLGYTIGEYVLLAMASALQVLY-IRKLFS 207 (215)
Q Consensus 179 rv~~~sii~i~vli~~~~~Qv~~-lk~fF~ 207 (215)
-|+..+++-..+-.+.++.|+|+ +|..|+
T Consensus 4 ~VLvLtlmSTtaTtlFaIiqlYlKIKq~lk 33 (75)
T PHA01750 4 TVLVLTLMSTTATTLFAIIQLYLKIKQALK 33 (75)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777888888899988 777665
No 68
>PF14109 GldH_lipo: GldH lipoprotein
Probab=34.98 E-value=1e+02 Score=22.60 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=26.8
Q ss_pred CCeeEEEEcCCCCeEeeeee-ecCCEEEE----EcCCCceeeEEEEcCCC
Q 028009 68 PGIDFTVTSPAGNVVHTVKG-TSGDKFEF----KAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 68 ~~i~~~I~~p~g~~l~~~~~-~~~g~f~f----~~~~~G~y~iCf~n~~~ 112 (215)
..+.+.+.||+|+.+-+.-+ ..+-.+.+ ..+.+|.|.+.+.--..
T Consensus 68 dtl~~~Lad~~G~w~G~G~~~~~e~~~~~~~~~~f~~~G~Y~~~i~q~Mr 117 (131)
T PF14109_consen 68 DTLECELADPDGKWLGKGIGDLYEYKLPYKENVRFPRKGSYTFTIEQAMR 117 (131)
T ss_pred eeEEEEEECCCCcEeeeeEeEeEEEEEEeecceecCCCCcEEEEEEeccc
Confidence 45777778888876654332 12222222 34688999988865443
No 69
>PHA02975 hypothetical protein; Provisional
Probab=34.09 E-value=89 Score=20.34 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028009 177 RKRLLGYTIGEYVLLAMASALQVLYIRK 204 (215)
Q Consensus 177 ~~rv~~~sii~i~vli~~~~~Qv~~lk~ 204 (215)
.+.-.+|-++-++.++++.++-..|||-
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYLK~ 67 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYLKL 67 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666677777888888888874
No 70
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=33.96 E-value=1.5e+02 Score=20.15 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=9.6
Q ss_pred CeeEEEEcCCCCeE
Q 028009 69 GIDFTVTSPAGNVV 82 (215)
Q Consensus 69 ~i~~~I~~p~g~~l 82 (215)
+.+|.|.|.+|..-
T Consensus 68 dYDVLItd~dG~~h 81 (100)
T PF05984_consen 68 DYDVLITDGDGSEH 81 (100)
T ss_pred cccEEEecCCCCcC
Confidence 57788887776543
No 71
>PHA03054 IMV membrane protein; Provisional
Probab=33.35 E-value=73 Score=20.86 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=18.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028009 176 TRKRLLGYTIGEYVLLAMASALQVLYIR 203 (215)
Q Consensus 176 ~~~rv~~~sii~i~vli~~~~~Qv~~lk 203 (215)
.+..-.+|-++-++.++++.++-..|||
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455556667777777788888887
No 72
>PRK14149 heat shock protein GrpE; Provisional
Probab=33.28 E-value=2.3e+02 Score=22.41 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=28.8
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 028009 135 DEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNE 174 (215)
Q Consensus 135 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~e 174 (215)
++.++.++.++..+.+.+.....+..-++.|..+-+....
T Consensus 42 ~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~ 81 (191)
T PRK14149 42 GEIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMAL 81 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888877777766666555444
No 73
>PF12669 P12: Virus attachment protein p12 family
Probab=33.13 E-value=34 Score=21.48 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=6.3
Q ss_pred HHHhhcccc
Q 028009 202 IRKLFSKSV 210 (215)
Q Consensus 202 lk~fF~~Kk 210 (215)
++++++++|
T Consensus 17 ~r~~~k~~K 25 (58)
T PF12669_consen 17 IRKFIKDKK 25 (58)
T ss_pred HHHHHHHhh
Confidence 488887654
No 74
>PHA02819 hypothetical protein; Provisional
Probab=32.79 E-value=89 Score=20.46 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=19.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028009 176 TRKRLLGYTIGEYVLLAMASALQVLYIRK 204 (215)
Q Consensus 176 ~~~rv~~~sii~i~vli~~~~~Qv~~lk~ 204 (215)
.+..-.+|-++-++.++++.++-..|||-
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~~~flYLK~ 69 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVIIFIIFYLKV 69 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555566677777777888888873
No 75
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=32.42 E-value=51 Score=19.14 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccC
Q 028009 187 EYVLLAMASALQVLYIRKLFSKSVAYNR 214 (215)
Q Consensus 187 ~i~vli~~~~~Qv~~lk~fF~~Kk~~~~ 214 (215)
-++-++++++.-.+.-|++-.+|++-.|
T Consensus 15 ~lVglv~i~iva~~iYRKw~aRkr~l~r 42 (43)
T PF08114_consen 15 CLVGLVGIGIVALFIYRKWQARKRALQR 42 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566677777888999999887665
No 76
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=32.37 E-value=4.2e+02 Score=24.68 Aligned_cols=14 Identities=21% Similarity=0.767 Sum_probs=11.3
Q ss_pred CceeeEEEEcCCCC
Q 028009 100 SGMYKFCFNNPYST 113 (215)
Q Consensus 100 ~G~y~iCf~n~~~~ 113 (215)
...|.||-.+..+.
T Consensus 87 ~e~YqfcYv~~~g~ 100 (546)
T PF07888_consen 87 DEFYQFCYVDQKGE 100 (546)
T ss_pred CCeEEEEEECCCcc
Confidence 45799999998874
No 77
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=31.16 E-value=1.3e+02 Score=18.43 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=24.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Q 028009 136 EHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKR 179 (215)
Q Consensus 136 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~r 179 (215)
+.++.++..+..|......|..+..-...--.+....++.+..+
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 34567777777777777777665544444333444444444433
No 78
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=30.91 E-value=3e+02 Score=22.53 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028009 180 LLGYTIGEYVLLAMASALQVLYIR 203 (215)
Q Consensus 180 v~~~sii~i~vli~~~~~Qv~~lk 203 (215)
-++|.++-++.+|++++.=+-+=|
T Consensus 198 sl~Wv~l~iG~iIi~tLtYvGwRK 221 (232)
T PF09577_consen 198 SLIWVMLSIGGIIIATLTYVGWRK 221 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999988888888776555544
No 79
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=30.40 E-value=2.9e+02 Score=22.30 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=38.5
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 028009 135 DEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQ 198 (215)
Q Consensus 135 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~sii~i~vli~~~~~Q 198 (215)
++...+...+|.+|+.++.+..-. -.+-+.+..+..+|++.+|+.-.++-+....||
T Consensus 7 K~~~~~~~~~L~rle~qi~q~~~~-------~~~~qs~l~~~~~r~tv~slAl~~l~~S~iy~~ 63 (251)
T COG5415 7 KDFVTKYTADLSRLESQIHQLDVA-------LKKSQSILSQWQSRLTVYSLALTVLALSYIYWE 63 (251)
T ss_pred ccccccchhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 344567888899988888766543 334455777888888888887665544444443
No 80
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=29.97 E-value=1e+02 Score=20.92 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=21.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028009 176 TRKRLLGYTIGEYVLLAMASALQVLYI 202 (215)
Q Consensus 176 ~~~rv~~~sii~i~vli~~~~~Qv~~l 202 (215)
..+-..+|.++..+++++.+++=+.|+
T Consensus 45 l~SFsSIW~iiN~~il~~A~~vyLry~ 71 (82)
T PF03554_consen 45 LSSFSSIWAIINVVILLCAFCVYLRYL 71 (82)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445568999999999999888766663
No 81
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=29.88 E-value=72 Score=17.34 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=13.3
Q ss_pred hhhhhhHHHHHHHHHHHHHh
Q 028009 4 RQRHRYVATYMILALLMSLI 23 (215)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (215)
|+=|+++.....+.++++++
T Consensus 6 ~~~H~~~g~~~~~~ll~~~l 25 (34)
T PF13172_consen 6 RKIHRWLGLIAAIFLLLLAL 25 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45688888877666655433
No 82
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=29.74 E-value=2.3e+02 Score=20.86 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=25.2
Q ss_pred EEEEcCCCCeEeeeeeecCCEEEEEcCCC-ceeeEEEEcCCCC
Q 028009 72 FTVTSPAGNVVHTVKGTSGDKFEFKAPRS-GMYKFCFNNPYST 113 (215)
Q Consensus 72 ~~I~~p~g~~l~~~~~~~~g~f~f~~~~~-G~y~iCf~n~~~~ 113 (215)
+...|-+|+.+.... ..++...|+.|+. =.|++++-|-...
T Consensus 74 i~F~dr~~e~i~~~i-~k~~~~~F~yP~~aysY~I~LinaG~~ 115 (128)
T PF15432_consen 74 IIFFDRQGEEIEEQI-IKNDSFEFTYPEEAYSYTISLINAGCQ 115 (128)
T ss_pred EEEEccCCCEeeEEE-EecCceEEeCCCCceEEEEEEeeCCCC
Confidence 333455566555433 3445577776554 4799999988763
No 83
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=29.09 E-value=1.7e+02 Score=19.02 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=30.2
Q ss_pred CeeEEEEcCCCCeEeeeeeecCCEEEEEcCCCceeeEEEEcCCC
Q 028009 69 GIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 69 ~i~~~I~~p~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~ 112 (215)
+.=+.|+|.+|+.+++..-.+...+++ +....+++=+-|...
T Consensus 8 ~sWv~V~d~dG~~~~~~~l~~G~~~~~--~~~~~~~i~iGna~~ 49 (77)
T PF13464_consen 8 DSWVEVTDADGKVLFSGTLKAGETKTF--EGKEPFRIRIGNAGA 49 (77)
T ss_pred CeEEEEEeCCCcEeeeeeeCCCcEEEE--eCCCCEEEEEeCCCc
Confidence 466788999999999877655556777 345567777777664
No 84
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=28.85 E-value=81 Score=20.10 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=18.9
Q ss_pred cCCCceeeEEEEcCCCC-CeEEEEEEE
Q 028009 97 APRSGMYKFCFNNPYST-PETVSFYIH 122 (215)
Q Consensus 97 ~~~~G~y~iCf~n~~~~-~~~V~f~i~ 122 (215)
..+.|.|..+..|.... ....+|.+.
T Consensus 43 ~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 43 EKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred HHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 35689999999999874 455566543
No 85
>PHA02844 putative transmembrane protein; Provisional
Probab=28.51 E-value=98 Score=20.49 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028009 179 RLLGYTIGEYVLLAMASALQVLYIRK 204 (215)
Q Consensus 179 rv~~~sii~i~vli~~~~~Qv~~lk~ 204 (215)
.-.+|-++-++.++++.++-..|||-
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYLK~ 71 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYLKA 71 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 33444445566667777777777773
No 86
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=27.73 E-value=1.6e+02 Score=20.92 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=13.2
Q ss_pred CCCeeEEEEcCCCCeEeee
Q 028009 67 HPGIDFTVTSPAGNVVHTV 85 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~ 85 (215)
+..+.+.|++.+|..++..
T Consensus 51 ~~~~~~~i~~~~g~~v~~~ 69 (142)
T PF14524_consen 51 DPVFGFAIRDSDGQRVFGT 69 (142)
T ss_dssp EEEEEEEEEETT--EEEEE
T ss_pred ccEEEEEEEcCCCCEEEEE
Confidence 3568889999999888753
No 87
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=27.60 E-value=1e+02 Score=24.83 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHHHHHHhhcceEEEEEe
Q 028009 6 RHRYVATYMILALLMSLIGRLSSLSVTV 33 (215)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~f~l 33 (215)
|| |+-.+|.+...+.+...+.+=+-++
T Consensus 5 ~~-ylHlAfl~ttvfsl~~~~~aN~T~~ 31 (227)
T PF05399_consen 5 GH-YLHLAFLMTTVFSLSPQTKANYTHL 31 (227)
T ss_pred cc-hhhHHHHHHHHHHcCcccccccccc
Confidence 56 8888887777766555554444443
No 88
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=27.38 E-value=5.1e+02 Score=27.73 Aligned_cols=66 Identities=24% Similarity=0.339 Sum_probs=40.8
Q ss_pred CCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeee--ecCC--EEEEEcCC---CceeeEEEEcCC
Q 028009 46 EGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKG--TSGD--KFEFKAPR---SGMYKFCFNNPY 111 (215)
Q Consensus 46 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~--~~~g--~f~f~~~~---~G~y~iCf~n~~ 111 (215)
+|+.+++..-.-+.+......+.++.+.+.+|+|.++.+..- ..+| +++|+.++ .|.|.+=+.-..
T Consensus 407 pGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~PdG~~~~~~~~~~~~~G~~~~~~~l~~na~tG~w~l~~~~~~ 479 (1621)
T COG2373 407 PGETVHVNALLRDFDGKTALDNQPLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPENALTGGYTLELYTGG 479 (1621)
T ss_pred CCceeeeeeeehhhcccccccCCCeEEEEECCCCcEEEEEEEeccccCceEEeeeCCCCCCcceEEEEEEeCC
Confidence 455565554443322110114668999999999988776432 2344 67777665 588988887655
No 89
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.30 E-value=1.3e+02 Score=21.20 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=21.6
Q ss_pred cccCCCchH-------HHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHhhH
Q 028009 133 AKDEHLDPI-------NVKIAELREALESV--VSEQKYLRARDTRHRHTNESTRKR 179 (215)
Q Consensus 133 a~~~~~~~l-------~~~l~~l~~~l~~i--~~~q~~~~~re~~~~~~~es~~~r 179 (215)
+++++++.+ +.++..++..++++ .++..-++.+-.+.+.....++.+
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~ 87 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSAR 87 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455566666 44444444444444 333333444444444444444433
No 90
>PHA02955 hypothetical protein; Provisional
Probab=27.11 E-value=73 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 028009 182 GYTIGEYVLLAMASALQVLYIRKLFSKS 209 (215)
Q Consensus 182 ~~sii~i~vli~~~~~Qv~~lk~fF~~K 209 (215)
-|.++-+++++++.++ ++|+||=..-|
T Consensus 180 ~w~ii~~v~ii~~~v~-l~yikR~i~~k 206 (213)
T PHA02955 180 KWFIIYIVLCLLILII-LGYIYRTVRIK 206 (213)
T ss_pred cchhHHHHHHHHHHHH-HHHHHHHheee
Confidence 5677777777777777 99999976544
No 91
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=26.50 E-value=64 Score=22.34 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=8.2
Q ss_pred eeEEEEcCCCCeE
Q 028009 70 IDFTVTSPAGNVV 82 (215)
Q Consensus 70 i~~~I~~p~g~~l 82 (215)
..+.++||+|+.+
T Consensus 105 ~~~~~~DPdG~~~ 117 (122)
T cd08355 105 REFTARDPEGNLW 117 (122)
T ss_pred EEEEEECCCCCEE
Confidence 4456777777655
No 92
>PF01606 Arteri_env: Arterivirus envelope protein; InterPro: IPR002556 This family consists of viral envelope proteins from the Arteriviridae; this includes Porcine reproductive and respiratory syndrome virus (PRRSV) envelope protein GP3 and Lactate dehydrogenase-elevating virus (LDV) structural glycoprotein. Arteriviruses consists of positive ssRNA and do not have a DNA stage.
Probab=26.20 E-value=2.5e+02 Score=21.95 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=24.6
Q ss_pred HHHHHhhcceEEEEEeCCcceeeEecccCCc---EEEEEEEEEe
Q 028009 18 LLMSLIGRLSSLSVTVNDVECVYEYVIYEGD---TVAGNFVVVD 58 (215)
Q Consensus 18 ~~~~~~~~~~~l~f~l~~~eCF~e~v~~~~~---~i~~~y~v~~ 58 (215)
|.+++...--++--..+.+-||+..+.. |. .++++|.|-.
T Consensus 13 C~f~~~~~c~~v~~~~nat~CfWFPl~~-Gn~sfEL~vNyTvC~ 55 (214)
T PF01606_consen 13 CSFICYSFCCAVAANSNATYCFWFPLVR-GNFSFELTVNYTVCP 55 (214)
T ss_pred HHHHhhheeeeEEeCCCceEEEEEEecc-CCceEEEEEeeEecC
Confidence 4333333333444444678999999986 53 3777888743
No 93
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=26.18 E-value=79 Score=19.96 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=18.6
Q ss_pred cCCCceeeEEEEcCCCC-CeEEEEEE
Q 028009 97 APRSGMYKFCFNNPYST-PETVSFYI 121 (215)
Q Consensus 97 ~~~~G~y~iCf~n~~~~-~~~V~f~i 121 (215)
....|.|..+..|.... .+.+++.+
T Consensus 44 ~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 44 EEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred HHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 46789999999998864 45555554
No 94
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=25.84 E-value=2.7e+02 Score=20.36 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.4
Q ss_pred ecCCEEEEEcCCCceeeEEEEcCCC
Q 028009 88 TSGDKFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 88 ~~~g~f~f~~~~~G~y~iCf~n~~~ 112 (215)
..+|.+.......|.|.+-|.|...
T Consensus 85 D~~Gki~Wk~~~kG~Y~v~l~n~e~ 109 (131)
T PF10794_consen 85 DEEGKIIWKNGRKGKYIVFLPNGET 109 (131)
T ss_pred CCCCcEEEecCCcceEEEEEcCCCc
Confidence 4678899999999999999988875
No 95
>PLN03160 uncharacterized protein; Provisional
Probab=25.64 E-value=1.7e+02 Score=23.58 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=7.8
Q ss_pred eeEEEEcCCCC
Q 028009 70 IDFTVTSPAGN 80 (215)
Q Consensus 70 i~~~I~~p~g~ 80 (215)
+++++++||.-
T Consensus 97 ~~v~v~NPN~~ 107 (219)
T PLN03160 97 ADVSVKNPNVA 107 (219)
T ss_pred EEEEEECCCce
Confidence 45567899874
No 96
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=25.56 E-value=3.7e+02 Score=21.92 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 028009 177 RKRLLGYTIGEYVLLAMASALQVLYIRKLFSKS 209 (215)
Q Consensus 177 ~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~K 209 (215)
.+...+|-.+.++|+++++++-.+.+-++|++-
T Consensus 211 ksk~s~wf~~~miI~v~~sFVsMiliiqifkkl 243 (244)
T KOG2678|consen 211 KSKLSYWFYITMIIFVILSFVSMILIIQIFKKL 243 (244)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334477777888888889999999988888753
No 97
>TIGR02186 alph_Pro_TM conserved hypothetical protein. This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.
Probab=25.19 E-value=4e+02 Score=22.20 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=27.3
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC------EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD------KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g------~f~f~~~~~G~y~iCf~n~~ 111 (215)
..+|-+.|.+|.......++.+.-| ...|.. -++.|.+--+.+.
T Consensus 68 ~~dVVV~v~GP~~~v~vRrK~R~~GIWvNt~sv~f~~-vPsfYaVaSsrPl 117 (261)
T TIGR02186 68 AYDIVVTLEGPRDDMVVRKKERVFGIWINTDSRTFLQ-VPESYSLASTRNI 117 (261)
T ss_pred CccEEEEEeCCCCCeEEEEeeeeeeEeEeCCceEEcC-CCcceeeeccCCH
Confidence 4689999999999876665544433 334432 4556666554444
No 98
>KOG3317 consensus Translocon-associated complex TRAP, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.94 E-value=3.4e+02 Score=21.19 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=18.4
Q ss_pred CcEEEEEEEEEeCccccCCCCCCeeEEEEc
Q 028009 47 GDTVAGNFVVVDHDIFWSTDHPGIDFTVTS 76 (215)
Q Consensus 47 ~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~ 76 (215)
+..+..+|++-+-|+ .+..+|++.|
T Consensus 41 ~rd~~leY~IyNvGs-----spAldVtLsD 65 (188)
T KOG3317|consen 41 ARDVSLEYDIYNVGS-----SPALDVTLSD 65 (188)
T ss_pred ceeeEEEEeeEEcCC-----CcceeEEecC
Confidence 567889999877552 4567788876
No 99
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=24.88 E-value=3.2e+02 Score=20.88 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=34.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHH
Q 028009 135 DEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYT 184 (215)
Q Consensus 135 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~s 184 (215)
+...+.+..+.++|.+....++.-.......-++...+..=..-+..+..
T Consensus 51 ~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf 100 (156)
T PF08372_consen 51 SRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALF 100 (156)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHH
Confidence 34456677788888888888888777777777777777665444444433
No 100
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=24.88 E-value=2.4e+02 Score=19.43 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=27.7
Q ss_pred cEEEEEEEEEeCccccCCCCCCeeEEEEcC-----CCCeEeeeeeecCCEEEEEcCCCceeeEEEEcC
Q 028009 48 DTVAGNFVVVDHDIFWSTDHPGIDFTVTSP-----AGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNP 110 (215)
Q Consensus 48 ~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p-----~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~ 110 (215)
..+.|...+.++-.. .+....+-+-+..| +....|..+-..+|.|++.--.+|.|.+-....
T Consensus 3 G~VsG~l~l~dg~~~-~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~ 69 (95)
T PF14686_consen 3 GSVSGRLTLSDGVTN-PPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYAD 69 (95)
T ss_dssp BEEEEEEE---SS---TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE-
T ss_pred CEEEEEEEEccCccc-CccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEe
Confidence 356777666555210 00122344444544 233344444458999999999999999988773
No 101
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=24.63 E-value=2.6e+02 Score=28.92 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=54.5
Q ss_pred eEEEEEeCCcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeee-eecCCEEEEEcCCCceeeE
Q 028009 27 SSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVK-GTSGDKFEFKAPRSGMYKF 105 (215)
Q Consensus 27 ~~l~f~l~~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~-~~~~g~f~f~~~~~G~y~i 105 (215)
.++.|.+..++---..|.+.+....|+.+....++.....-.+-.|.+.|.+|+.+...- -...|....+-..+|+|+|
T Consensus 1131 tPV~FtI~eeq~e~~~vtKeN~~~~GsvqLtK~Ds~t~a~LaGA~Fel~d~dG~~VqegLtTD~nG~i~VtdL~PGdYqF 1210 (1531)
T COG4932 1131 TPVNFTISEEQDEAAKVTKENTLKPGSVQLTKVDSATKATLAGAEFELQDEDGTLVQEGLTTDENGKINVTDLAPGDYQF 1210 (1531)
T ss_pred ccceeEeeccCCceeEEeecccccccceEEEEecccccccccCcEEEEEcCCCcEeeccceecCCCcEEecccCCcceee
Confidence 455666642222222333335666777777766542211234678999999999887642 2356888888888999998
Q ss_pred EEEcCCC
Q 028009 106 CFNNPYS 112 (215)
Q Consensus 106 Cf~n~~~ 112 (215)
.=.+-..
T Consensus 1211 VETkAP~ 1217 (1531)
T COG4932 1211 VETKAPT 1217 (1531)
T ss_pred eeecCCc
Confidence 8766654
No 102
>PHA03163 hypothetical protein; Provisional
Probab=24.61 E-value=2e+02 Score=19.78 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=21.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028009 175 STRKRLLGYTIGEYVLLAMASALQVLY 201 (215)
Q Consensus 175 s~~~rv~~~sii~i~vli~~~~~Qv~~ 201 (215)
+..+--.+|.++..+++++.++.=+.|
T Consensus 53 sL~SFSSIWaliNv~Ivl~A~~iyL~y 79 (92)
T PHA03163 53 QLLSFSSIWAILNVLIMLIACIIYCIY 79 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556789999999999888876665
No 103
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.40 E-value=93 Score=21.96 Aligned_cols=27 Identities=11% Similarity=-0.065 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028009 181 LGYTIGEYVLLAMASALQVLYIRKLFS 207 (215)
Q Consensus 181 ~~~sii~i~vli~~~~~Qv~~lk~fF~ 207 (215)
.||+++..++.++.++++.+.=++|-+
T Consensus 7 ~~w~ii~a~~~~~~~~~~~~l~~~~a~ 33 (106)
T PF10805_consen 7 KNWGIIWAVFGIAGGIFWLWLRRTYAK 33 (106)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 589999999988888888887666544
No 104
>PF05371 Phage_Coat_Gp8: Phage major coat protein, Gp8; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1IFK_A 2C0W_A 2HI5_A 1FDM_A 1IFJ_A 2C0X_A 1IFI_A 1IFD_A 1MZT_A 1IFL_A ....
Probab=24.33 E-value=1.1e+02 Score=18.73 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 028009 186 GEYVLLAMASALQVLYIRKLFSK 208 (215)
Q Consensus 186 i~i~vli~~~~~Qv~~lk~fF~~ 208 (215)
.-+++.+..+++=+...|+|+.+
T Consensus 29 w~vvv~v~gafigirlFKKf~sk 51 (52)
T PF05371_consen 29 WPVVVLVTGAFIGIRLFKKFASK 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567777888888899998764
No 105
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=24.16 E-value=3.2e+02 Score=20.68 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHH
Q 028009 141 INVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVL 190 (215)
Q Consensus 141 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~sii~i~v 190 (215)
+...-..+.+....+++.-+-+-..+.+....+++...++.+|.-++.+.
T Consensus 33 l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~it 82 (157)
T PF04136_consen 33 LQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPIT 82 (157)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Confidence 33333444444445555556666777888888899999999888777654
No 106
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=24.08 E-value=3.4e+02 Score=20.97 Aligned_cols=43 Identities=23% Similarity=0.218 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Q 028009 143 VKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTI 185 (215)
Q Consensus 143 ~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si 185 (215)
.+...+...+..+..+..-+......-...++....+++|..+
T Consensus 57 ~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl 99 (180)
T PF04678_consen 57 SRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGL 99 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777788887777777777777777777777766543
No 107
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=23.80 E-value=3.4e+02 Score=20.89 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=23.6
Q ss_pred CeeEEEEcCCCCe-----EeeeeeecCCEEEEEcCCCceeeEEE
Q 028009 69 GIDFTVTSPAGNV-----VHTVKGTSGDKFEFKAPRSGMYKFCF 107 (215)
Q Consensus 69 ~i~~~I~~p~g~~-----l~~~~~~~~g~f~f~~~~~G~y~iCf 107 (215)
+..+.+..+++.. -..-.-..+|.++|+.+.+|.|-+=.
T Consensus 166 ~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a 209 (215)
T PF10670_consen 166 GAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRA 209 (215)
T ss_pred cEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEE
Confidence 4556665554331 11112236899999999999886643
No 108
>PF07523 Big_3: Bacterial Ig-like domain (group 3); InterPro: IPR011080 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.; PDB: 2L7Y_A 2KPN_A.
Probab=23.55 E-value=2e+02 Score=18.02 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=27.8
Q ss_pred CCeeEEEEcCCCCeEeeeeeecCCEEEEEcCCCceeeEEEEcCCCCCeEEEEEE
Q 028009 68 PGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYI 121 (215)
Q Consensus 68 ~~i~~~I~~p~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~~~~~V~f~i 121 (215)
.+..+...+.+|+.+-.....-+| .+.....|.|.+-+.-.. ....|.+
T Consensus 17 ~~~~v~at~~dG~~~~~~~~~vs~--~~d~~~~G~y~Vt~~y~~---~t~t~~V 65 (67)
T PF07523_consen 17 TGLFVTATYSDGTSLPLSDVTVSG--TVDTSKAGTYTVTYTYKG---VTATFTV 65 (67)
T ss_dssp HCHEEEEEETTS-ES-GCCSEEES-----TTS-CCEEEEEEECT---EEEEEEE
T ss_pred cCCEEEEEEcCCCEeceeeeEEEe--eeecCCCceEEEEEEECC---EEEEEEE
Confidence 357788888888875433333344 567788999988887665 3444443
No 109
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=23.54 E-value=1.8e+02 Score=20.40 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 028009 180 LLGYTIGEYVLLAMASALQVLYIRKLFSKSVA 211 (215)
Q Consensus 180 v~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk~ 211 (215)
|...+++.+++.++..+.=.+++|++|.-+..
T Consensus 20 IfLItLasVvvavGl~aGLfFcvR~~lslrn~ 51 (106)
T PF14654_consen 20 IFLITLASVVVAVGLFAGLFFCVRNSLSLRNT 51 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 34445555666666666777889998876654
No 110
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=23.02 E-value=99 Score=16.56 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=9.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 028009 176 TRKRLLGYTIGEYVLLAMASA 196 (215)
Q Consensus 176 ~~~rv~~~sii~i~vli~~~~ 196 (215)
...+---|+++|+++.+++..
T Consensus 9 ~~~~~~GFTLiEllVa~~I~~ 29 (31)
T PF13544_consen 9 RRRRQRGFTLIELLVAMAILA 29 (31)
T ss_dssp ---------HHHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHHHHH
Confidence 344557899999988877654
No 111
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=22.89 E-value=4.3e+02 Score=21.67 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=41.5
Q ss_pred HHHHHhhcceEEEE-EeC-C----cceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEE-EcCCCCeEeeeeeecC
Q 028009 18 LLMSLIGRLSSLSV-TVN-D----VECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTV-TSPAGNVVHTVKGTSG 90 (215)
Q Consensus 18 ~~~~~~~~~~~l~f-~l~-~----~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I-~~p~g~~l~~~~~~~~ 90 (215)
+++++.+=...+.+ +++ . -+|+...-.. ...+.++....-.+......-.+-.|+| .+..+...........
T Consensus 6 l~l~l~sC~~~i~~~~~~~~~~lVV~~~i~~~~~-~~~V~Ls~s~~~~~~~~~~~v~~A~V~i~~~~~~~~~~~~~~~~~ 84 (298)
T PF14054_consen 6 LLLLLSSCEKEIDIDDLDEEPKLVVEGYITNPGD-PQTVRLSRSVPYFDNSPPEPVSGATVTIYEDGQGNEYLFEESSNN 84 (298)
T ss_pred HHHHHhccCcccccCcCCCCCeEEEEEEEecCCC-cEEEEEEEeecccCCCCCcccCCcEEEEEeCCCcceEeecccCCC
Confidence 33344444555566 443 1 2677774442 4556666655322211111134677778 4444444433332221
Q ss_pred -CEEE----EEcCCCceeeEEEEc
Q 028009 91 -DKFE----FKAPRSGMYKFCFNN 109 (215)
Q Consensus 91 -g~f~----f~~~~~G~y~iCf~n 109 (215)
|.+. |.......|++=+.-
T Consensus 85 ~g~Y~~~~~~~~~~G~~Y~L~V~~ 108 (298)
T PF14054_consen 85 DGVYYSSNSFRGRPGRTYRLEVET 108 (298)
T ss_pred cceEEecccccccCCCEEEEEEEE
Confidence 4333 223333456666654
No 112
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=22.32 E-value=1.2e+02 Score=15.82 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=9.8
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 028009 5 QRHRYVATYMILALLMSL 22 (215)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (215)
+=|+++.-.+++++++++
T Consensus 3 ~LH~w~~~i~al~~lv~~ 20 (27)
T PF03929_consen 3 DLHKWFGDIFALFMLVFA 20 (27)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 347755555555554443
No 113
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=22.32 E-value=77 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=19.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH
Q 028009 137 HLDPINVKIAELREALESVVSEQ 159 (215)
Q Consensus 137 ~~~~l~~~l~~l~~~l~~i~~~q 159 (215)
+++|+++++++|+..++++.+..
T Consensus 32 dv~pi~Eqi~kLe~~vddl~~sl 54 (108)
T COG4062 32 DVDPIEEQIKKLETLVDDLENSL 54 (108)
T ss_pred eccHHHHHHHHHHHHHHHHHhcc
Confidence 57899999999999998887754
No 114
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=22.04 E-value=55 Score=23.77 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=11.3
Q ss_pred CCCceeeEEEEcCCC
Q 028009 98 PRSGMYKFCFNNPYS 112 (215)
Q Consensus 98 ~~~G~y~iCf~n~~~ 112 (215)
...|.|++||.-...
T Consensus 114 LP~GsYRiCFrL~~~ 128 (145)
T TIGR02542 114 LPEGSYRICFRLFNA 128 (145)
T ss_pred CCCCceEEEEEEecc
Confidence 357899999976554
No 115
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=22.02 E-value=68 Score=25.86 Aligned_cols=20 Identities=20% Similarity=0.547 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHhhcce
Q 028009 8 RYVATYMILALLMSLIGRLS 27 (215)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (215)
-+|+|||+++++|+++..+.
T Consensus 40 ~fLlWyfviilvLm~~~ras 59 (243)
T PF15468_consen 40 SFLLWYFVIILVLMFFSRAS 59 (243)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 47899998888776655443
No 116
>PRK00523 hypothetical protein; Provisional
Probab=21.92 E-value=2.3e+02 Score=18.70 Aligned_cols=28 Identities=18% Similarity=0.040 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028009 181 LGYTIGEYVLLAMASALQVLYIRKLFSK 208 (215)
Q Consensus 181 ~~~sii~i~vli~~~~~Qv~~lk~fF~~ 208 (215)
..|-++-++.+++-.+.=.|.-|++|++
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555666654
No 117
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=21.54 E-value=2.4e+02 Score=21.79 Aligned_cols=13 Identities=38% Similarity=0.440 Sum_probs=9.5
Q ss_pred cEEEEEEEEEeCc
Q 028009 48 DTVAGNFVVVDHD 60 (215)
Q Consensus 48 ~~i~~~y~v~~~~ 60 (215)
..++|+..+..|+
T Consensus 48 ~~~tGnV~i~QG~ 60 (180)
T PRK10894 48 VTFTGNVVVTQGT 60 (180)
T ss_pred EEEEeeEEEEECc
Confidence 4588888887665
No 118
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=21.36 E-value=99 Score=25.06 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=30.5
Q ss_pred CcEEEEEEEEEeCcc-ccCCCCCCeeEEEEcCCCCeEeeeeee---cC-CEEEE--EcCCCceeeEEEEcC
Q 028009 47 GDTVAGNFVVVDHDI-FWSTDHPGIDFTVTSPAGNVVHTVKGT---SG-DKFEF--KAPRSGMYKFCFNNP 110 (215)
Q Consensus 47 ~~~i~~~y~v~~~~~-~~~~~~~~i~~~I~~p~g~~l~~~~~~---~~-g~f~f--~~~~~G~y~iCf~n~ 110 (215)
+-.|.+.|.-..++. .....-..+++.|.|.+|+.+...... .. +.+.. .....|+|+++.-..
T Consensus 7 ~~~l~f~y~~~~~~~~~~~~~v~~v~lyvFd~~g~~v~~~~~~~~~~~~~~y~~~~~~l~~G~Y~~va~~n 77 (283)
T PF08842_consen 7 GLTLKFSYDYNMGNADAFEDEVKRVDLYVFDEDGKLVKQRTIDSEELEGGGYTMFLLDLPPGTYTFVAWGN 77 (283)
T ss_dssp -EEEEEE---STT-S--HHHH--EEEEEEE-TTSBEEEEEEEECGGCCTTTEEE-CCT--SEEEEEEEEES
T ss_pred eEEEEEEEeCCccccccccceEeEEEEEEEeCCCeEEEEEEcccccccCCceEEeeccCCCCcEEEEEEEC
Confidence 555666655421110 001113479999999999966543321 12 34444 445788998877554
No 119
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.23 E-value=3.3e+02 Score=19.73 Aligned_cols=6 Identities=17% Similarity=0.312 Sum_probs=3.2
Q ss_pred HHHHHH
Q 028009 179 RLLGYT 184 (215)
Q Consensus 179 rv~~~s 184 (215)
|-+||-
T Consensus 85 rk~wWk 90 (116)
T KOG0860|consen 85 RKMWWK 90 (116)
T ss_pred HHHHHH
Confidence 446663
No 120
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.19 E-value=2.3e+02 Score=17.86 Aligned_cols=13 Identities=8% Similarity=0.048 Sum_probs=6.5
Q ss_pred HhhHHHHHHHHHH
Q 028009 176 TRKRLLGYTIGEY 188 (215)
Q Consensus 176 ~~~rv~~~sii~i 188 (215)
...+.++|.++-+
T Consensus 36 ~~~~~i~~~~~i~ 48 (59)
T PF09889_consen 36 RKTQYIFFGIFIL 48 (59)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555444
No 121
>PF02927 CelD_N: N-terminal ig-like domain of cellulase; InterPro: IPR004197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Cellulases (Endoglucanases) 3.2.1.4 from EC catalyse the endohydrolysis of 1,4-beta-D-glucosidic linkages in cellulose. This is the N-terminal ig-like domain of cellulase, enzymes containing this domain belong to family 9 of the glycoside hydrolases (GH9 from CAZY).; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1CLC_A 1WMX_B 2C24_B 1RQ5_A 3K4Z_A 3H7L_B 3RX5_A 3RX8_A 3H2W_A 3RX7_A ....
Probab=21.17 E-value=2.7e+02 Score=18.73 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=21.9
Q ss_pred CeeEEEEcCCCCeEeeeee------ecCCEEE----EE-cCCCceeeEEEEcC
Q 028009 69 GIDFTVTSPAGNVVHTVKG------TSGDKFE----FK-APRSGMYKFCFNNP 110 (215)
Q Consensus 69 ~i~~~I~~p~g~~l~~~~~------~~~g~f~----f~-~~~~G~y~iCf~n~ 110 (215)
...+.|.|..++.+++..- ...|... |+ .++.|+|.|.+.+.
T Consensus 35 ~~~f~l~d~~~~~V~~g~~~~~~~~~~s~~~~~~~DFS~~~~~G~Y~i~~~~~ 87 (91)
T PF02927_consen 35 PSTFELVDASGGKVYTGKLSPAGVDPWSGEYVYRIDFSDLTTPGTYYIRVGGA 87 (91)
T ss_dssp --EEEEEETTSBEEEEEEEEEEEECTTTTEEEEEEE-TT--S-EEEEEEETTE
T ss_pred eeEEEEEcCCCCEEEEEEeeCccccCCCCCeEEEEEcCCcCCCEEEEEEECCc
Confidence 4678888877776665321 1233322 32 36899999987543
No 122
>PRK01844 hypothetical protein; Provisional
Probab=21.08 E-value=2.3e+02 Score=18.65 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028009 183 YTIGEYVLLAMASALQVLYIRKLFSK 208 (215)
Q Consensus 183 ~sii~i~vli~~~~~Qv~~lk~fF~~ 208 (215)
|-++-++.+++-.+.=.|.-|++|++
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555666554
No 123
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=20.61 E-value=3.4e+02 Score=21.37 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=28.2
Q ss_pred HHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028009 163 RARDTRHRHTNESTRKRLLGYTIGEYVLLAMASA 196 (215)
Q Consensus 163 ~~re~~~~~~~es~~~rv~~~sii~i~vli~~~~ 196 (215)
|+|-+.|.+..-...+++.+.-+++.++.+++.+
T Consensus 20 RerVas~Yq~sa~~Ks~lk~l~~~h~ll~l~~~a 53 (186)
T PF07086_consen 20 RERVASHYQMSAQLKSRLKKLILFHALLWLLMAA 53 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888999999999999888876644
No 124
>PRK14758 hypothetical protein; Provisional
Probab=20.32 E-value=1.5e+02 Score=15.41 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=11.5
Q ss_pred ChhhhhhhhHHHHHHHHHHH
Q 028009 1 MEKRQRHRYVATYMILALLM 20 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (215)
|-.|-|-.+++..++++++.
T Consensus 1 Mv~RYrFEliLivlIlCali 20 (27)
T PRK14758 1 MVGRYRFEFILIILILCALI 20 (27)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 34455666666666666654
No 125
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=20.15 E-value=3.3e+02 Score=27.46 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=35.6
Q ss_pred EEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeee-eeecC---CEEEEEcCCCceeeEEEEcCC
Q 028009 50 VAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTV-KGTSG---DKFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 50 i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~-~~~~~---g~f~f~~~~~G~y~iCf~n~~ 111 (215)
+.+.+.+.+.+ +..+.+.|.||+|+....- .+..+ ..++|.....|.|.+=+.=..
T Consensus 378 ~d~~fD~~Dag------eg~levqV~gp~Gk~~~~~V~d~~~~~~h~vsY~pd~~G~y~i~v~~~g 437 (1113)
T KOG0518|consen 378 VDFTFDEGDAG------EGLLEVQVVGPEGKEKEVVVRDNGRGGIHIVTYVPDCPGRYLIVVFYGG 437 (1113)
T ss_pred ceeeEEccccc------cceEEEEEECCCCCceeeEEEecCCCceEEEEEcCCCCCceEEEEEECC
Confidence 34445554433 3459999999999854321 12222 267888899999988775443
No 126
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.11 E-value=2.2e+02 Score=21.56 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=29.9
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 028009 135 DEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRK 178 (215)
Q Consensus 135 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~ 178 (215)
-.+-++++..+....+.++.+..+.+-++.+............+
T Consensus 38 g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (151)
T PF14584_consen 38 GKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQ 81 (151)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445778888888888888888877776666665555554433
No 127
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=20.05 E-value=1.7e+02 Score=17.59 Aligned_cols=17 Identities=6% Similarity=0.125 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028009 190 LLAMASALQVLYIRKLF 206 (215)
Q Consensus 190 vli~~~~~Qv~~lk~fF 206 (215)
+++++.+.-..++||+-
T Consensus 10 li~lv~~gy~~hmkryc 26 (54)
T PF13260_consen 10 LIVLVVVGYFCHMKRYC 26 (54)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455567788764
Done!