Query 028009
Match_columns 215
No_of_seqs 131 out of 1105
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 07:19:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 95.8 0.13 4.6E-06 43.8 12.3 88 29-125 282-385 (403)
2 2p9r_A Alpha-2-M, alpha-2-macr 94.3 0.76 2.6E-05 31.1 10.6 65 46-111 15-86 (102)
3 2ee9_A Filamin-B; beta-sandwic 92.1 0.43 1.5E-05 32.4 6.0 46 67-112 29-77 (95)
4 2d7n_A Filamin-C; beta-sandwic 92.0 0.52 1.8E-05 31.7 6.3 46 67-112 21-69 (93)
5 2d7m_A Filamin-C; beta-sandwic 89.6 1.3 4.6E-05 30.6 7.0 46 67-112 43-91 (115)
6 2dmb_A Filamin-B; beta-sandwic 89.5 1.5 5.2E-05 31.0 7.3 46 67-112 42-90 (124)
7 3cnk_A Filamin-A; FLNA24, X-RA 89.1 3.1 0.00011 27.2 8.2 45 67-111 29-76 (89)
8 3rgh_A Filamin-A; cell adhesio 89.0 3.1 0.00011 28.0 8.3 45 67-111 38-85 (100)
9 2dj4_A Filamin-B; beta-sandwic 88.1 2.5 8.6E-05 28.9 7.4 45 67-111 42-89 (108)
10 2d7p_A Filamin-C; beta-sandwic 88.0 1.9 6.6E-05 29.8 6.8 45 67-111 40-87 (112)
11 2ee6_A Filamin-B; beta-sandwic 87.9 2.4 8.1E-05 28.9 7.2 44 67-111 41-86 (105)
12 2dlg_A Filamin-B; beta-sandwic 87.4 1.2 4.1E-05 30.4 5.3 46 67-112 30-78 (102)
13 4dzg_A PLIG; lysozyme inhibito 87.0 2.2 7.6E-05 29.7 6.7 66 35-111 28-96 (114)
14 2eea_A Filamin-B; beta-sandwic 85.6 4.3 0.00015 28.0 7.6 44 67-111 51-96 (115)
15 1v05_A Filamin C; actin-bindin 85.5 4.6 0.00016 26.8 7.5 45 67-111 36-83 (96)
16 2bp3_A Filamin A; structural p 84.7 4.5 0.00015 26.9 7.1 44 67-111 36-81 (97)
17 2e9j_A Filamin-B; beta-sandwic 84.5 1.5 5E-05 30.7 4.7 45 67-111 53-100 (119)
18 2dia_A Filamin-B; beta-sandwic 83.8 6.2 0.00021 27.1 7.7 45 67-111 41-88 (113)
19 2w0p_A Filamin-A; alternative 83.5 6.8 0.00023 25.8 7.6 44 67-111 33-78 (94)
20 2dic_A Filamin-B; beta-sandwic 83.0 6.7 0.00023 26.5 7.5 44 67-111 41-86 (105)
21 2dmc_A Filamin-B; beta-sandwic 82.9 1.5 5.1E-05 30.7 4.2 46 67-112 44-92 (116)
22 2k9u_A Gamma filamin; cytoskel 82.2 5.4 0.00018 27.7 6.9 44 67-111 48-93 (119)
23 2nqc_A Filamin-C; immunoglobul 80.9 7.3 0.00025 28.0 7.4 44 67-111 75-119 (138)
24 2k7p_A Filamin-A; IG-like, ABP 79.5 11 0.00039 28.3 8.5 44 67-111 127-172 (188)
25 2di9_A Filamin-B; beta-sandwic 78.7 12 0.00039 26.5 7.8 44 67-111 61-106 (131)
26 4fxk_A Complement C4 beta chai 77.9 20 0.00067 32.0 10.9 65 45-111 132-202 (656)
27 2ds4_A Tripartite motif protei 77.1 8.2 0.00028 26.1 6.5 45 67-111 48-97 (113)
28 3isy_A Bsupi, intracellular pr 76.5 17 0.00057 25.5 7.9 40 47-86 17-60 (120)
29 3d33_A Domain of unknown funct 76.0 15 0.00052 25.2 7.5 45 67-111 48-97 (108)
30 2eec_A Filamin-B; beta-sandwic 75.1 11 0.00038 26.4 6.8 44 67-111 51-95 (125)
31 2d7o_A Filamin-C; beta-sandwic 74.7 5.2 0.00018 27.5 4.9 44 67-111 41-86 (111)
32 4b7l_A Filamin-B; structural p 74.4 14 0.00049 30.7 8.4 45 67-111 286-335 (347)
33 2di8_A Filamin-B; beta-sandwic 74.3 14 0.00049 25.2 7.1 44 67-111 41-86 (111)
34 2hr0_A Complement C3 beta chai 74.2 39 0.0013 30.3 11.8 65 45-111 118-190 (645)
35 2pn5_A TEP1R, thioester-contai 73.3 24 0.00081 34.7 10.8 67 45-111 112-185 (1325)
36 2dib_A Filamin-B; beta-sandwic 72.9 4.2 0.00014 28.6 4.1 46 67-112 56-104 (128)
37 2k7p_A Filamin-A; IG-like, ABP 72.8 9 0.00031 28.8 6.2 45 67-111 33-80 (188)
38 1qfh_A Protein (gelation facto 71.4 9.3 0.00032 29.2 6.1 44 67-111 134-180 (212)
39 3osv_A Flagellar basal-BODY RO 71.1 13 0.00046 26.4 6.6 56 49-111 25-91 (138)
40 4g9s_B Inhibitor of G-type lys 70.3 16 0.00056 24.9 6.6 65 35-111 26-93 (111)
41 3irp_X URO-adherence factor A; 70.2 7.2 0.00024 33.6 5.6 45 68-112 330-374 (429)
42 3c12_A FLGD, flagellar protein 68.4 29 0.00098 24.6 8.1 43 68-110 39-92 (138)
43 2k7q_A Filamin-A; IG-like, ABP 67.0 14 0.00047 27.7 6.2 45 67-111 30-77 (191)
44 2k7q_A Filamin-A; IG-like, ABP 66.9 14 0.00049 27.7 6.2 44 67-111 127-172 (191)
45 1wlh_A Gelation factor; ABP-12 66.4 13 0.00044 30.1 6.3 45 67-112 233-280 (311)
46 3hrz_A Cobra venom factor; ser 63.6 25 0.00085 31.7 8.1 64 46-111 117-183 (627)
47 3cu7_A Complement C5; Mg domai 60.6 37 0.0013 34.3 9.4 64 46-111 137-207 (1676)
48 1jcd_A Major outer membrane li 59.7 24 0.00084 20.8 5.3 45 136-180 4-48 (52)
49 2b39_A C3; thioester, immune d 59.6 57 0.0019 33.0 10.5 64 45-110 139-210 (1661)
50 3prx_B Cobra venom factor; imm 56.8 65 0.0022 32.6 10.3 64 46-111 139-205 (1642)
51 3hd7_B Syntaxin-1A; membrane p 56.4 44 0.0015 22.7 9.3 19 137-155 22-40 (109)
52 1qle_D Cytochrome AA3, ccytoch 54.0 28 0.00095 19.7 4.4 29 169-197 13-41 (43)
53 3sd2_A Putative member of DUF3 53.2 50 0.0017 22.3 6.2 46 67-112 44-92 (101)
54 2k8e_A UPF0339 protein YEGP; p 52.6 42 0.0014 23.7 6.2 60 47-112 14-91 (130)
55 1wlh_A Gelation factor; ABP-12 52.6 27 0.00094 28.1 5.9 45 67-111 142-189 (311)
56 2j3s_A Filamin-A; cytoskeleton 52.2 13 0.00046 29.8 3.9 44 68-111 131-177 (288)
57 4acq_A Alpha-2-macroglobulin; 51.2 1.1E+02 0.0039 30.4 11.0 64 46-111 117-188 (1451)
58 1m56_D Cytochrome C oxidase; m 49.8 37 0.0013 19.9 4.9 28 170-197 22-49 (51)
59 1gl2_D Syntaxin 8, vesicle tra 49.1 42 0.0014 20.3 5.1 46 135-180 8-53 (65)
60 3swy_A Cyclic nucleotide-gated 48.2 37 0.0013 19.5 4.4 27 138-164 7-33 (46)
61 1qfh_A Protein (gelation facto 47.5 34 0.0012 25.9 5.5 45 67-111 43-90 (212)
62 2x5p_A FBA2, fibronectin bindi 46.6 26 0.00089 24.4 4.2 42 68-111 43-84 (121)
63 2nps_D Syntaxin-6; vesicle fus 45.0 58 0.002 20.8 6.1 46 135-180 18-63 (82)
64 3fn2_A Putative sensor histidi 39.0 36 0.0012 23.1 3.7 40 69-108 49-91 (106)
65 3afg_A Subtilisin-like serine 38.6 1E+02 0.0035 27.1 7.7 56 67-123 458-515 (539)
66 3swf_A CGMP-gated cation chann 37.3 61 0.0021 20.6 4.4 30 137-166 8-37 (74)
67 2j3s_A Filamin-A; cytoskeleton 36.7 1.5E+02 0.0053 23.3 8.0 44 67-111 36-81 (288)
68 1n7s_D SNAP-25A; neuronal snar 31.8 87 0.003 18.9 4.8 45 136-180 10-54 (66)
69 1sfc_D Protein (SNAP-25B), pro 30.1 99 0.0034 19.9 4.8 45 136-180 29-73 (87)
70 4div_A ORF48; distal tail prot 29.3 2.2E+02 0.0077 22.9 11.9 124 51-177 31-172 (299)
71 2akf_A Coronin-1A; coiled coil 27.9 67 0.0023 16.4 4.4 20 139-158 2-21 (32)
72 3ogl_Q JAZ1 incomplete degron 26.2 19 0.00065 17.0 0.5 11 201-211 9-19 (21)
73 3bid_A UPF0339 protein NMB1088 25.3 1.2E+02 0.0041 18.5 4.3 20 67-86 10-29 (64)
74 2lsj_B DNA polymerase kappa; R 30.9 15 0.00052 18.2 0.0 10 202-211 6-15 (26)
75 2yko_A LINE-1 ORF1P; RNA-bindi 24.5 1.7E+02 0.0059 22.8 5.9 39 136-174 6-44 (233)
76 2lif_A Core protein P21; signa 30.2 16 0.00054 18.5 0.0 17 13-29 8-24 (27)
77 3jqw_A COLH protein, collagena 23.6 1.8E+02 0.0063 20.0 10.4 67 35-112 37-106 (121)
78 2k49_A UPF0339 protein SO_3888 23.5 1.6E+02 0.0055 20.3 5.1 54 52-111 3-74 (118)
79 2pnv_A Small conductance calci 22.3 1.1E+02 0.0036 17.2 3.2 19 140-158 20-38 (43)
80 3kpt_A Collagen adhesion prote 21.6 1.7E+02 0.0059 24.0 5.9 40 68-107 267-312 (355)
81 3hd7_A Vesicle-associated memb 20.9 1.8E+02 0.0062 18.9 9.3 33 151-184 34-66 (91)
82 3e8v_A Possible transglutamina 20.5 1.1E+02 0.0039 19.7 3.5 31 67-97 17-48 (82)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=95.81 E-value=0.13 Score=43.84 Aligned_cols=88 Identities=17% Similarity=0.285 Sum_probs=56.8
Q ss_pred EEEEeCCcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcC-----C---C--CeEeeeeeecC----CEEE
Q 028009 29 LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSP-----A---G--NVVHTVKGTSG----DKFE 94 (215)
Q Consensus 29 l~f~l~~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p-----~---g--~~l~~~~~~~~----g~f~ 94 (215)
+++..|+....-..+..+|+.|...|.+. +.+|.|.|.-. + | ..+........ ..=+
T Consensus 282 ~~V~~g~~~~v~~~v~~~g~~l~W~f~~~---------~~DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~G~ 352 (403)
T 1olm_A 282 VQISRGSSHQVEYEILFPGCVLRWQFMSD---------GADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGT 352 (403)
T ss_dssp EEECTTCEEEEEEEECSTTCEEEEEEEES---------SSCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEE
T ss_pred EEEcCCCEEEEEEEEcCCCCEEEEEEEec---------CCcEEEEEEEecccccccCCCcceEEeeeeeecCccccccCE
Confidence 33333566666667765688888888873 23688877621 1 1 12332221111 1345
Q ss_pred EEcCCCceeeEEEEcCCC--CCeEEEEEEEEcc
Q 028009 95 FKAPRSGMYKFCFNNPYS--TPETVSFYIHVGH 125 (215)
Q Consensus 95 f~~~~~G~y~iCf~n~~~--~~~~V~f~i~~~~ 125 (215)
+.++++|.|.++|+|+.| ..|+|.+.+.+..
T Consensus 353 ~~~~~~G~y~l~fdNs~S~~~~k~l~y~v~v~~ 385 (403)
T 1olm_A 353 LTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLL 385 (403)
T ss_dssp EECCSCEEEEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred EEcCCCeEEEEEEeccccceeceEEEEEEEEeC
Confidence 778999999999999998 4799999888863
No 2
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=94.33 E-value=0.76 Score=31.07 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=42.9
Q ss_pred CCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeee--cCCEE--EEEc---CCCceeeEEEEcCC
Q 028009 46 EGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGT--SGDKF--EFKA---PRSGMYKFCFNNPY 111 (215)
Q Consensus 46 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~--~~g~f--~f~~---~~~G~y~iCf~n~~ 111 (215)
+|+.+.+..-+.+.+.. +.....+.+.|.||+|+.+.++... ..|.+ +|.. ...|.|++......
T Consensus 15 PGetV~~~~~~~~~~~~-p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~ 86 (102)
T 2p9r_A 15 PGQTVKFRVVSMDENFH-PLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS 86 (102)
T ss_dssp TTCEEEEEEEEECGGGC-BCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred CCCEEEEEEEEECCCCc-CCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence 68888877776654421 1122336899999999998875332 35644 4443 35799999998754
No 3
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.06 E-value=0.43 Score=32.36 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=34.1
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~ 112 (215)
..++.+.|.+|+|+.+.-. .+...| ...|++.+.|.|.+++.-...
T Consensus 29 ~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~ 77 (95)
T 2ee9_A 29 KGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGS 77 (95)
T ss_dssp TTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSC
T ss_pred CCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCE
Confidence 5689999999999865432 233445 567789999999999975553
No 4
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=91.95 E-value=0.52 Score=31.74 Aligned_cols=46 Identities=9% Similarity=0.178 Sum_probs=34.1
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~ 112 (215)
..++.+.|.+|+|+.+.-. .+...| ...|++++.|.|.+++.-...
T Consensus 21 ~~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~ 69 (93)
T 2d7n_A 21 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGN 69 (93)
T ss_dssp SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSS
T ss_pred CCCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCE
Confidence 4579999999999865432 233445 677889999999999975553
No 5
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=89.59 E-value=1.3 Score=30.64 Aligned_cols=46 Identities=11% Similarity=0.191 Sum_probs=33.3
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~ 112 (215)
...+.+.|.+|+|..+... .+...| ..+|++.+.|.|.+.+.-...
T Consensus 43 ~~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~ 91 (115)
T 2d7m_A 43 EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGD 91 (115)
T ss_dssp SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSC
T ss_pred CCEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEECCE
Confidence 4579999999998754332 233455 567889999999999875553
No 6
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=89.54 E-value=1.5 Score=30.97 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=33.7
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~ 112 (215)
...+.+.|.+|+|..+.-. .+...| ...|++++.|.|.+++.-...
T Consensus 42 ~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~ 90 (124)
T 2dmb_A 42 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGV 90 (124)
T ss_dssp SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSC
T ss_pred CCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECCE
Confidence 4679999999998755432 233455 577889999999999975543
No 7
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=89.13 E-value=3.1 Score=27.21 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=31.8
Q ss_pred CCCeeEEEEcCCCCeEe-eeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVH-TVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~-~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|+|..+. +-.+...| ..+|++.+.|.|.+.+.-..
T Consensus 29 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g 76 (89)
T 3cnk_A 29 NNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH 76 (89)
T ss_dssp SCCEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECC
Confidence 45789999999986332 22334556 56678999999999887544
No 8
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=88.96 E-value=3.1 Score=28.01 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=31.8
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|+|..+.-. .+...| ..+|+++..|.|.+.+.=..
T Consensus 38 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~~g 85 (100)
T 3rgh_A 38 SAELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYGG 85 (100)
T ss_dssp SCCEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEETT
T ss_pred CceEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECC
Confidence 4579999999998754432 334456 46778899999988875443
No 9
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=88.06 E-value=2.5 Score=28.87 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=32.9
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|+|..+.-. .+...| ..+|++.+.|.|.+.+.-..
T Consensus 42 ~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g 89 (108)
T 2dj4_A 42 LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYAD 89 (108)
T ss_dssp SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESS
T ss_pred CceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEECC
Confidence 5679999999999655432 334556 46678899999999887554
No 10
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=88.00 E-value=1.9 Score=29.83 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=32.6
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
+..+.+.|.+|+|..+.-. .+...| ..+|++++.|.|.+.+.-..
T Consensus 40 ~g~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g 87 (112)
T 2d7p_A 40 RGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNG 87 (112)
T ss_dssp CSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESS
T ss_pred CCCEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECC
Confidence 3579999999999754432 223445 57788999999998886554
No 11
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.90 E-value=2.4 Score=28.85 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=33.1
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|.+..+ +-.+...| ..+|++.+.|.|.+.+.-..
T Consensus 41 ~~~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g 86 (105)
T 2ee6_A 41 AGGLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFND 86 (105)
T ss_dssp CCCEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEECC
Confidence 4579999999998655 33344555 68889999999999987544
No 12
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=87.37 E-value=1.2 Score=30.44 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=33.9
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~ 112 (215)
..++.+.|.+|+|..+.-. .+...| ..+|++++.|.|.+.+.-...
T Consensus 30 ~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~ 78 (102)
T 2dlg_A 30 SSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQ 78 (102)
T ss_dssp GGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSS
T ss_pred CCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCE
Confidence 4579999999999865443 233455 466789999999999976553
No 13
>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}
Probab=87.05 E-value=2.2 Score=29.71 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=45.0
Q ss_pred CcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCe---EeeeeeecCCEEEEEcCCCceeeEEEEcCC
Q 028009 35 DVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNV---VHTVKGTSGDKFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 35 ~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~---l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~ 111 (215)
+...+...+.+ |+.+++.. ++ +..+.+.|.+|+|+. ++.......+.++-+.+.+|+|++=+....
T Consensus 28 ~~~~Y~~~a~a-GQ~l~V~l---s~-------~~~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~~r 96 (114)
T 4dzg_A 28 DTIHYTLVAXA-GQTMTVXI---GG-------SSNANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQMR 96 (114)
T ss_dssp CCEEEECCC-C-CCEEEC-C---EE-------STTCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEECCH
T ss_pred CceEEEEEecC-CCEEEEEe---CC-------CCcEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEecc
Confidence 34577777874 88887765 22 245888999999874 344333334588889999999999998763
No 14
>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.63 E-value=4.3 Score=28.00 Aligned_cols=44 Identities=11% Similarity=0.276 Sum_probs=32.5
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|++..+ +-.+...| ..+|++.+.|.|.+.+.-..
T Consensus 51 ~~~l~v~v~~p~~~~~-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g 96 (115)
T 2eea_A 51 EGGLDLAIEGPSKAEI-SCIDNKDGTCTVTYLPTLPGDYSILVKYND 96 (115)
T ss_dssp SSCEEEEEESSSCCEE-CCBCCSSSEEEEEEECSSCSCEEEEEEESS
T ss_pred CCceEEEEECCCCceE-EEEECCCCEEEEEEEeCCCeeEEEEEEECC
Confidence 4579999999988544 23344566 57788999999999887444
No 15
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Probab=85.54 E-value=4.6 Score=26.76 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=31.5
Q ss_pred CCCeeEEEEcCCCCeEe-eeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVH-TVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~-~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|.|..+. +-.+...| ..+|++++.|.|.+.+.-..
T Consensus 36 ~~~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g 83 (96)
T 1v05_A 36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD 83 (96)
T ss_dssp SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEEEECC
Confidence 45789999999886332 22334556 56678899999999887544
No 16
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=84.66 E-value=4.5 Score=26.90 Aligned_cols=44 Identities=9% Similarity=0.234 Sum_probs=30.8
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|.+..+.- .+...| ..+|++++.|.|.+.+.-..
T Consensus 36 ~~~l~v~v~~p~~~~~~v-~d~~dGty~v~Y~p~~~G~y~i~V~~~g 81 (97)
T 2bp3_A 36 EGGLSLAIEGPSKAEISC-TDNQDGTCSVSYLPVLPGDYSILVKYNE 81 (97)
T ss_dssp SEEEEEEEEESSCCEEEE-EECSSSEEEEEEECSSCEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCEEEE-EECCCCEEEEEEEeCCCCcEEEEEEECC
Confidence 346888888888754432 334556 57788899999999987444
No 17
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.48 E-value=1.5 Score=30.69 Aligned_cols=45 Identities=9% Similarity=0.172 Sum_probs=32.0
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|+|..+.-. .+...| ..+|++.+.|.|.+.+.-..
T Consensus 53 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g 100 (119)
T 2e9j_A 53 EGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGG 100 (119)
T ss_dssp CCCEECCEECTTCCCCCEEEEECCSSEEEEEECCCSCSEEEECCEESS
T ss_pred CCeEEEEEECCCCCEEEEEEEECCCCEEEEEEEeCCCEEEEEEEEECC
Confidence 5679999999998644332 233456 46678899999998886544
No 18
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=83.76 E-value=6.2 Score=27.05 Aligned_cols=45 Identities=11% Similarity=0.228 Sum_probs=33.0
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|+|..+.-. .+...| ..+|++.+.|.|.+.+.-..
T Consensus 41 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g 88 (113)
T 2dia_A 41 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGG 88 (113)
T ss_dssp SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETT
T ss_pred CccEEEEEECCCCCEeeEEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence 4679999999988655432 344556 56778999999999997555
No 19
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=83.52 E-value=6.8 Score=25.84 Aligned_cols=44 Identities=11% Similarity=0.226 Sum_probs=31.7
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|.+..+.- .+...| ..+|++.+.|.|.+.+.-..
T Consensus 33 ~~~~~v~v~gp~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g 78 (94)
T 2w0p_A 33 AGGLAIAVEGPSKAEISF-EDRKDGSCGVAYVVQEPGDYEVSVKFNE 78 (94)
T ss_dssp SCCEEEEEEESSCCEEEE-EECTTSCEEEEEECSSCEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCeEEE-EECCCCEEEEEEEECCCceEEEEEEECC
Confidence 456888899998854432 334556 57788999999999987544
No 20
>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=83.00 E-value=6.7 Score=26.53 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=31.7
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
..++.+.|.+|.+..+.- .+...| ..+|++.+.|.|.+.+.-..
T Consensus 41 ~g~l~v~v~gp~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g 86 (105)
T 2dic_A 41 IGGLGITVEGPSESKINC-RDNKDGSCSAEYIPFAPGDYDVNITYGG 86 (105)
T ss_dssp SSCEEEEEESSSCCCCEE-EECSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCeEEE-EECCCCeEEEEEEeCCCeEEEEEEEECC
Confidence 456889999998764432 233456 67788999999999987544
No 21
>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=82.85 E-value=1.5 Score=30.66 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=33.8
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~ 112 (215)
..++.+.|.+|+|..+--. .+...| ..+|++.+.|.|.+.+.-...
T Consensus 44 ~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g~ 92 (116)
T 2dmc_A 44 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGN 92 (116)
T ss_dssp STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSS
T ss_pred CCCEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECCE
Confidence 4579999999999754332 233455 577899999999999875553
No 22
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=82.20 E-value=5.4 Score=27.69 Aligned_cols=44 Identities=11% Similarity=0.253 Sum_probs=31.8
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|.+-.+. -.+...| ..+|++.+.|.|.+.+.-..
T Consensus 48 ~~~l~v~v~~p~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~g 93 (119)
T 2k9u_A 48 AGGLSIAVEGPSKAEIA-FEDRKDGSCGVSYVVQEPGDYEVSIKFND 93 (119)
T ss_dssp SEEEEEEEESSSCCEEE-EECCSSSEEEEEEECCSSEEEEEEEEETS
T ss_pred CCcEEEEEeCCCCCeEE-EEECCCCEEEEEEEECCCceEEEEEEECC
Confidence 45688999999884332 2344566 57788999999999997544
No 23
>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A
Probab=80.89 E-value=7.3 Score=27.97 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=31.7
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC-EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD-KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g-~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|++..+.-. +..+| ..+|++.+.|.|.+.+.-..
T Consensus 75 ~g~l~v~I~gPs~~~~~~~-d~~dGy~V~YtP~~~G~y~I~Vk~~g 119 (138)
T 2nqc_A 75 SGALSVTIDGPSKVQLDCR-ECPEGHVVTYTPMAPGNYLIAIKYGG 119 (138)
T ss_dssp SCCEEEEEESSSCCEEEEE-EETTEEEEEEECCSCEEEEEEEEESS
T ss_pred CCcEEEEEECCCCCeeeEE-ECCCcEEEEEEcCCCEEEEEEEEECC
Confidence 4579999999998755332 23444 66778999999988886444
No 24
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=79.50 E-value=11 Score=28.25 Aligned_cols=44 Identities=9% Similarity=0.237 Sum_probs=33.1
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|.+..+. -.+...| ..+|++...|.|.+++.-..
T Consensus 127 ~g~l~v~I~gp~~~~~~-~~d~~dGty~v~Y~p~~~G~y~i~V~~~g 172 (188)
T 2k7p_A 127 EGGLSLAIEGPSKAEIS-CTDNQDGTCSVSYLPVLPGDYSILVKYNE 172 (188)
T ss_dssp SSCEEEEEECSSCCEEE-EEECTTSEEEEEEECCSSEEEEEEEEETT
T ss_pred CCCeEEEEeCCCCCeEE-EEECCCCEEEEEEEeCCCEEEEEEEEECC
Confidence 45789999999886543 2344567 67888999999999997554
No 25
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=78.67 E-value=12 Score=26.47 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=31.8
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|.+-.+. -.+...| ..+|++++.|.|.+.+.-..
T Consensus 61 ~~~l~v~v~gp~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~g 106 (131)
T 2di9_A 61 TGGLGLTVEGPCEAKIE-CSDNGDGTCSVSYLPTKPGEYFVNILFEE 106 (131)
T ss_dssp SSCEEEEECSSSCCEEE-EEECSSSEEEEEEECSSSSEEEEEEEESS
T ss_pred CCeeEEEEEecCCceEE-EEECCCCEEEEEEEeCCCeeEEEEEEECC
Confidence 45789999999885442 2334556 56778999999999987544
No 26
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=77.89 E-value=20 Score=32.05 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=43.7
Q ss_pred cCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeee-ecCCEEE--EEc---CCCceeeEEEEcCC
Q 028009 45 YEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKG-TSGDKFE--FKA---PRSGMYKFCFNNPY 111 (215)
Q Consensus 45 ~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~-~~~g~f~--f~~---~~~G~y~iCf~n~~ 111 (215)
.+|+.+.+..-+.+.+. .+.+..+.+.|.||+|+.+.++.- ...|.++ |.. ...|.|++-+....
T Consensus 132 rPGqtV~~r~i~~d~~~--~p~~~~~~v~i~dp~g~~v~~~~~~~~~G~~~~~f~Lp~~~~~G~w~i~v~~~~ 202 (656)
T 4fxk_A 132 NPGQRVRYRVFALDQKM--RPSTDTITVMVENSHGLRVRKKEVYMPSSIFQDDFVIPDISEPGTWKISARFSD 202 (656)
T ss_dssp CTTCEEEEEEEEECSSS--SBCCCCEEEEEECTTCCEEEEEEECCTTSEEEEEEECCTTCCSEEEEEEEEESS
T ss_pred CCCCEEEEEEEEECCcc--CcCcccceEEEECCCCcEEeeeEEecCCceEEEEecCCCCCCCcCEEEEEEEcC
Confidence 46888877766665442 123567999999999999877642 2346444 433 45799999997543
No 27
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.13 E-value=8.2 Score=26.11 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=30.7
Q ss_pred CCCeeEEEEcCCC--CeEe-eeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAG--NVVH-TVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g--~~l~-~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|++ ..+. +-.+...| ..+|++...|.|.+++.-..
T Consensus 48 g~~~~v~i~~p~~~~~~~~~~v~D~~dGty~v~y~p~~~G~y~i~V~~~g 97 (113)
T 2ds4_A 48 GDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKE 97 (113)
T ss_dssp CCCEEEEEEESSCSSCCCEEEEECCSSSEEEEEEECSSSEEEEEEEEESS
T ss_pred CceEEEEEEecCCCCceeEEEEEECCCCEEEEEEEeCCCeEEEEEEEECC
Confidence 3468999999886 3222 22344556 46678899999999987554
No 28
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=76.45 E-value=17 Score=25.49 Aligned_cols=40 Identities=5% Similarity=-0.050 Sum_probs=27.2
Q ss_pred CcEEEEEEEEEeCcccc----CCCCCCeeEEEEcCCCCeEeeee
Q 028009 47 GDTVAGNFVVVDHDIFW----STDHPGIDFTVTSPAGNVVHTVK 86 (215)
Q Consensus 47 ~~~i~~~y~v~~~~~~~----~~~~~~i~~~I~~p~g~~l~~~~ 86 (215)
|+.+.+.+.|.+.++.. -++....++.|+|++|+.+|.+.
T Consensus 17 g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS 60 (120)
T 3isy_A 17 PEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYS 60 (120)
T ss_dssp SSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETT
T ss_pred CCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEcc
Confidence 45677777776644311 12356789999999999999654
No 29
>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}
Probab=75.95 E-value=15 Score=25.18 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=33.6
Q ss_pred CCCeeEEEE-cCCCCeEeeeeeecC--CEEEEE--cCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVT-SPAGNVVHTVKGTSG--DKFEFK--APRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~-~p~g~~l~~~~~~~~--g~f~f~--~~~~G~y~iCf~n~~ 111 (215)
..++.++|. +.+|+++|+..-... ..+.+. ...+|.|.+=+.+..
T Consensus 48 ~~~vtItI~~~~tG~iVY~~~v~~~~~~~~~I~L~~~~~G~Y~L~i~~~~ 97 (108)
T 3d33_A 48 DRDMTIRITDMAKGGVVYENDIPEVQSAYITISIANFPAEEYKLEITGTP 97 (108)
T ss_dssp CSEEEEEEEETTTCCEEEEEEECGGGTTEEEEECTTSCSEEEEEEEEEES
T ss_pred CCCEEEEEEECCCCcEEEEEeecCCCCcEEEEEcCCccCceEEEEEEeCC
Confidence 457999999 788999998764332 344554 457999999998873
No 30
>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.12 E-value=11 Score=26.39 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=31.6
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC-EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD-KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g-~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|++..+--. +..+| ..+|++.+.|.|.+.+.-..
T Consensus 51 ~~~l~v~i~gp~~~~~~~~-d~~dGy~V~Y~P~~~G~y~I~V~~~g 95 (125)
T 2eec_A 51 PGTLSVTIEGPSKVKMDCQ-ETPEGYKVMYTPMAPGNYLISVKYGG 95 (125)
T ss_dssp SCCEEEEEESSSCCCCEEE-ECSSSEEEEECCSSCEEEEEEEEESS
T ss_pred CCcEEEEEECCCCCcceeE-ECCCCEEEEEEcCCCeEEEEEEEECC
Confidence 4679999999988644322 33455 56678899999998886444
No 31
>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=74.65 E-value=5.2 Score=27.45 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=31.4
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|.+..+ .-.+...| ..+|++++.|.|.+.+.-..
T Consensus 41 ~~~l~v~v~gp~~~~~-~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g 86 (111)
T 2d7o_A 41 EGGLSLAVEGPSKAEI-TCKDNKDGTCTVSYLPTAPGDYSIIVRFDD 86 (111)
T ss_dssp SSCBCCEEESSSCCCB-CCCCCSSSEEEEEECCSSCEEEEEECBBSS
T ss_pred CCcEEEEEECCCCceE-EEEECCCCEEEEEEEeCCCeEEEEEEEECC
Confidence 4568889999986543 22344556 56788999999999996544
No 32
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=74.36 E-value=14 Score=30.68 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=32.6
Q ss_pred CCCeeEEEEcCCCCeEeee---eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV---KGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~---~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
..++.+.|.+|+|..+.-. .+...| ..+|++.+.|.|.+-+.-..
T Consensus 286 ~g~l~v~V~~P~G~~~~~~v~~~~~~~gty~v~y~P~~~G~~~I~V~~~g 335 (347)
T 4b7l_A 286 QGDVMVFVEDPEGNKEEAQVTPDSDKNKTYSVEYLPKVTGLHKVTVLFAG 335 (347)
T ss_dssp SCCEEEEEECTTSCEEECEEEESSTTCSEEEEEECCCSSSEEEEEEEETT
T ss_pred CCceEEEEECCCCCeecCEEEEEcCCCCEEEEEEEECCCEeEEEEEEECC
Confidence 5679999999999865432 222345 46788999999998875444
No 33
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=74.35 E-value=14 Score=25.15 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=31.2
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
..++.+.|.+|.+-.+. -.+...| ..+|++++.|.|.+.+.-..
T Consensus 41 ~g~l~v~v~gp~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~g 86 (111)
T 2di8_A 41 YGGISLAVEGPSKVDIQ-TEDLEDGTCKVSYFPTVPGVYIVSTKFAD 86 (111)
T ss_dssp BCCEEEEEESSSCCCEE-CCBCTTSCEEEEECCCSCSEEEEEEEESS
T ss_pred CCceEEEEEcCCCceEE-EEECCCCEEEEEEEeCCCeEEEEEEEECC
Confidence 34688899999875442 2334556 67788999999998886444
No 34
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=74.17 E-value=39 Score=30.29 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=43.8
Q ss_pred cCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeee---cCCEE--EEEc---CCCceeeEEEEcCC
Q 028009 45 YEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGT---SGDKF--EFKA---PRSGMYKFCFNNPY 111 (215)
Q Consensus 45 ~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~---~~g~f--~f~~---~~~G~y~iCf~n~~ 111 (215)
.+|+.+.+..-+.+.+.. +.+..+.+.|.||+|+.+.+..-. ..|.+ +|.. ...|.|++-+....
T Consensus 118 rPGqtV~~r~i~~d~~~~--p~~~~v~v~l~dP~g~~i~~~~~~~~~~~G~~~~~f~Lp~~~~~G~w~I~v~~~~ 190 (645)
T 2hr0_A 118 TPGSTVLYRIFTVNHKLL--PVGRTVMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYEN 190 (645)
T ss_dssp CTTSEEEEEEEEECTTSC--BCCCEEEEEEECTTSCEEEEEEEECTTTTTEEEEEEECCSSCCCSEEEEEEEETT
T ss_pred CCCCEEEEEEEEECCCCc--ccCceEEEEEECCCCCEEEEEEeeccccCCeEEEEEECCCccccccEEEEEEECC
Confidence 468888777666664421 233578999999999999874332 45644 4443 35799999998643
No 35
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=73.28 E-value=24 Score=34.71 Aligned_cols=67 Identities=19% Similarity=0.301 Sum_probs=43.8
Q ss_pred cCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeee--cCCEE--EEEc---CCCceeeEEEEcCC
Q 028009 45 YEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGT--SGDKF--EFKA---PRSGMYKFCFNNPY 111 (215)
Q Consensus 45 ~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~--~~g~f--~f~~---~~~G~y~iCf~n~~ 111 (215)
.+|+.+.+.--+.+.+.........+.++|.||+|+++.++... ..|.+ +|.. ...|.|++=.....
T Consensus 112 rPGqtV~~r~~~~~~~~~p~~~~~~v~v~l~dp~g~~i~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~I~~~~~~ 185 (1325)
T 2pn5_A 112 KPGDTVNFRVIVLDTELKPPARVKSVYVTIRDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISVEVEG 185 (1325)
T ss_dssp CTTCEEEEEEEEEETTSSCCSSCCEEEEEEECTTCCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEEETT
T ss_pred CCCCEEEEEEEEecCCccccccCccEEEEEECCCCCEEEEEecccCCCCeEecceECCCCccccceEEEEEeCC
Confidence 36788877766666542111112358999999999999887543 45644 4443 35799999987653
No 36
>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=72.88 E-value=4.2 Score=28.58 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=33.1
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~ 112 (215)
...+.+.|.+|+|..+.-. .+...| ..+|++.+.|.|.+.+.-...
T Consensus 56 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~~~i~V~~~g~ 104 (128)
T 2dib_A 56 GDHIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDV 104 (128)
T ss_dssp CSCCCEECCCSSSCCCCCEEEECSSSEEEEEECCSSCSEEEEEEBSSSC
T ss_pred CccEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCEeEEEEEEECCE
Confidence 4579999999998644332 233456 466789999999999976553
No 37
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=72.77 E-value=9 Score=28.82 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=33.7
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
..++.+.|.+|+|+...-. .+...| ...|++.+.|.|++.+.-..
T Consensus 33 ~~~v~~~v~~PsG~~~~~~v~d~~dgty~v~y~P~~~G~h~i~V~~~g 80 (188)
T 2k7p_A 33 KGEITGEVRMPSGKVAQPTITDNKDGTVTVRYAPSEAGLHEMDIRYDN 80 (188)
T ss_dssp SSCEEEEEECTTSCEECCEEEECSSSEEEEEECCCCCEEEEEEEEETT
T ss_pred CceEEEEEECCCCCccccEEEeCCCCEEEEEEEccccEeEEEEEEECC
Confidence 4579999999999865422 223456 56788999999999987664
No 38
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10
Probab=71.36 E-value=9.3 Score=29.16 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=32.8
Q ss_pred CCCeeEEEEcCCCCeEe-eeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVH-TVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~-~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|+| .+. .-.+...| ..+|++.+.|.|.+++.-..
T Consensus 134 ~~~l~v~i~~p~g-~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g 180 (212)
T 1qfh_A 134 GDKFEVSITGPAE-EITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNG 180 (212)
T ss_dssp CCCEEEEEEECCS-EEEEEEEECSSSEEEEEEEEESSEEEEEEEEETT
T ss_pred CCcEEEEEECCCC-ceeeEEEECCCCEEEEEEEcCCCEEEEEEEEECC
Confidence 4578999999998 332 22344567 67788999999999997655
No 39
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=71.14 E-value=13 Score=26.40 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=37.7
Q ss_pred EEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeee--eecCCEEEEEc---------CCCceeeEEEEcCC
Q 028009 49 TVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVK--GTSGDKFEFKA---------PRSGMYKFCFNNPY 111 (215)
Q Consensus 49 ~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~--~~~~g~f~f~~---------~~~G~y~iCf~n~~ 111 (215)
...+.|.+... -..+.+.|+|.+|+++++.. ..+.|.+.|.. -.+|.|.+-+....
T Consensus 25 ~~~~~~~l~~~-------a~~v~v~I~d~~G~~V~t~~~g~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~v~a~~ 91 (138)
T 3osv_A 25 TFKASLNLPVS-------SSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSI 91 (138)
T ss_dssp CEEEEEEESBC-------EEEEEEEEECTTSCEEEEEEEEEECSEEEEEEECSBCTTSCBCCSEEEEEEEEEEE
T ss_pred eEEEEEECCCC-------CcEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCccEEEEEEEEc
Confidence 45566665322 23699999999999998753 34567666643 23688999886553
No 40
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=70.33 E-value=16 Score=24.86 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=43.3
Q ss_pred CcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeee---eeecCCEEEEEcCCCceeeEEEEcCC
Q 028009 35 DVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTV---KGTSGDKFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 35 ~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~---~~~~~g~f~f~~~~~G~y~iCf~n~~ 111 (215)
+...+...+.+ |+.++++.. . .+..+.|..|.+...... ......+++.+.|.+|+|++=+....
T Consensus 26 ~~~~Y~~~a~a-GQ~l~v~l~---s--------~~~~~~i~~pg~~~~~~~~~~~~~~~~~~~~~LP~sG~Y~I~V~~~r 93 (111)
T 4g9s_B 26 DYDTYTFYAKK-GQKVHVSIS---N--------EGADTYLFGPGIDDSVDLSRYSPELDSHGQYSLPASGKYELRVLQTR 93 (111)
T ss_dssp CCEEEEEEECT-TCEEEEEES---C--------TTCEEEEECTTCSSCEECSTTCTTCCTTSCEECSSSEEEEEEEECCH
T ss_pred CceEEEEEecC-CCEEEEEEe---c--------CCccEEEECCCCccccccccccccCCceEEEEecCCccEEEEEEecc
Confidence 45677788884 888877543 1 245677888876643321 12223467888999999999997543
No 41
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X
Probab=70.17 E-value=7.2 Score=33.64 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=38.5
Q ss_pred CCeeEEEEcCCCCeEeeeeeecCCEEEEEcCCCceeeEEEEcCCC
Q 028009 68 PGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 68 ~~i~~~I~~p~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~~ 112 (215)
.++.|.+.+|+|.++....-...|.+.|.-..+|.|.+-|..+..
T Consensus 330 ~gv~v~L~d~~G~~v~tttTd~~G~Y~F~~L~~G~Y~V~~~~P~G 374 (429)
T 3irp_X 330 AGITVNLLDPTGIRLATTTTDITGHYNFDNLTNGNYLVEFVMPEG 374 (429)
T ss_dssp TTCEEEEECTTSCEEEEEECCTTSEEEEEEEESEEEEEEECCCTT
T ss_pred CCeEEEEEcCCCCEEEEEEeCCCCeEEeCCCCCCcEEEEEECCCC
Confidence 478999999999988777667899999998899999999976543
No 42
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=68.37 E-value=29 Score=24.58 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=31.7
Q ss_pred CCeeEEEEcCCCCeEeeee--eecCCEEEEEcC---------CCceeeEEEEcC
Q 028009 68 PGIDFTVTSPAGNVVHTVK--GTSGDKFEFKAP---------RSGMYKFCFNNP 110 (215)
Q Consensus 68 ~~i~~~I~~p~g~~l~~~~--~~~~g~f~f~~~---------~~G~y~iCf~n~ 110 (215)
..+.+.|+|.+|+++.+-. ..+.|.+.|... .+|.|.+.+.-.
T Consensus 39 ~~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a~ 92 (138)
T 3c12_A 39 GFVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQT 92 (138)
T ss_dssp EEEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCBCCSEEEEEEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCceEEEEEEEE
Confidence 4699999999999998754 345666666532 368999999754
No 43
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=67.04 E-value=14 Score=27.74 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=33.5
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
..++.++|.+|+|+.+.-. ....+| ..+|++.+.|.|.+-+....
T Consensus 30 ~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~~~G~~~i~V~~~g 77 (191)
T 2k7q_A 30 LSLLTATVVPPSGREEPCLLKRLRNGHVGISFVPKETGEHLVHVKKNG 77 (191)
T ss_dssp SSSEEEEEECTTSCCEECEEEECTTSCEEEECCCSSSEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCEEeeEEEECCCCEEEEEEEccCCEeEEEEEEECC
Confidence 4579999999999865432 223445 56789999999998887655
No 44
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=66.95 E-value=14 Score=27.67 Aligned_cols=44 Identities=9% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|.+..+ .-.+...| ..+|++.+.|.|.+++.-..
T Consensus 127 ~g~l~v~V~gp~~~~~-~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g 172 (191)
T 2k7q_A 127 YGGLSLSIEGPSKVDI-NTEDLEDGTCRVTYCPTEPGNYIINIKFAD 172 (191)
T ss_dssp SEEEEEEEEESSCEEE-EEEECTTSCEEEEEEESSCEEEEEEEEETT
T ss_pred CCceEEEEECCCCceE-EEEECCCCEEEEEEEeCCCceEEEEEEECC
Confidence 3468888888887543 22334556 67888999999999997554
No 45
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain, structural protein; 2.80A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Probab=66.43 E-value=13 Score=30.13 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=33.2
Q ss_pred CCCeeEEEEcCCCCeEee-eeeecCCE--EEEEcCCCceeeEEEEcCCC
Q 028009 67 HPGIDFTVTSPAGNVVHT-VKGTSGDK--FEFKAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~-~~~~~~g~--f~f~~~~~G~y~iCf~n~~~ 112 (215)
...+.+.|.+|+| .+.- -.+...|. .+|++.+.|.|.+++.-...
T Consensus 233 ~~~l~v~i~~p~g-~~~~~v~d~~~G~y~v~y~p~~~G~y~i~V~~~g~ 280 (311)
T 1wlh_A 233 GDKFEVSITGPAE-EITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGK 280 (311)
T ss_dssp CSCEEEEEESCCS-EEEEEEEECSSSEEEEEEEEECSEEEEEEEEETTE
T ss_pred CCcEEEEEECCCC-CceeEEEECCCCEEEEEEECCCCEeEEEEEEECCE
Confidence 3468999999999 4432 23445675 78889999999999976663
No 46
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=63.60 E-value=25 Score=31.69 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=36.8
Q ss_pred CCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeec--CCEEEEEc-CCCceeeEEEEcCC
Q 028009 46 EGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTS--GDKFEFKA-PRSGMYKFCFNNPY 111 (215)
Q Consensus 46 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~--~g~f~f~~-~~~G~y~iCf~n~~ 111 (215)
+|+.+.+..-+.+.+ ..+.+..+.+.|.||+|+.+.++.-.. ++.|.... ...|.|++.+....
T Consensus 117 PGqtV~~r~i~~d~~--~~p~~~~~~v~i~dP~g~~i~~~~~~~~~~~~f~Lp~~~~~G~w~i~v~~~~ 183 (627)
T 3hrz_A 117 PGSPVLYRVFSMDHN--TSKMNKTVIVEFQTPEGILVSSNSVDLNFFWPYNLPDLVSLGTWRIVAKYEH 183 (627)
T ss_dssp TTCEECEEEEESCC---------CEEEEEECTTCCEEEEEEEBTTBCCCEECCSSCCCEEEEEEEEETT
T ss_pred CCCEEEEEEEEECCC--CcccCccEEEEEECCCCCEEEEEEeccceEEEEECCCCCCCeeEEEEEEECC
Confidence 567766554444332 112346799999999999998543222 22333322 35799999997543
No 47
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=60.59 E-value=37 Score=34.33 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=43.7
Q ss_pred CCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeee-cCCEEE---EEc---CCCceeeEEEEcCC
Q 028009 46 EGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGT-SGDKFE---FKA---PRSGMYKFCFNNPY 111 (215)
Q Consensus 46 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~-~~g~f~---f~~---~~~G~y~iCf~n~~ 111 (215)
||+.+.+..-+.+.+. .+.+..+.+.|.||+|+.+.++.-. ..|.++ |.. ...|.|++=+....
T Consensus 137 PGqtV~~r~i~~d~~~--~p~~~~v~v~l~dP~G~~i~~~~~~~~~G~~~~~~f~Lp~~~~~G~w~I~v~~~~ 207 (1676)
T 3cu7_A 137 PDQSVKVRVYSLNDDL--KPAKRETVLTFIDPEGSEVDMVEEIDHIGIISFPDFKIPSNPRYGMWTIKAKYKE 207 (1676)
T ss_dssp TTCEECEEEEEECTTC--SCCCCCEEEEEEETTTEECCCEEECCSSSEEECCCEECCSSCCCEEEEEEEEBSS
T ss_pred CCCEEEEEEEEECCCC--cccccceEEEEECCCCCEEEEEeeecCCCceecceeeCCCCccccceEEEEEecC
Confidence 6788877666665442 1234579999999999998876422 456555 333 35799999998754
No 48
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=59.73 E-value=24 Score=20.79 Aligned_cols=45 Identities=7% Similarity=0.113 Sum_probs=29.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 028009 136 EHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180 (215)
Q Consensus 136 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 180 (215)
.+++.|...++.|...+..+..+...++.--..-.+-....+.|+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346778888888888888888877777654333333444444443
No 49
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=59.57 E-value=57 Score=32.97 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=43.0
Q ss_pred cCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeee---cCC--EEEEEcC---CCceeeEEEEcC
Q 028009 45 YEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGT---SGD--KFEFKAP---RSGMYKFCFNNP 110 (215)
Q Consensus 45 ~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~---~~g--~f~f~~~---~~G~y~iCf~n~ 110 (215)
.||+.+.+..-+.+.+.. +.+..+.+.|.||+|+.+.+..-. ..| .++|..+ ..|.|++=+...
T Consensus 139 rPGqtV~~r~i~~d~~~~--p~~~~v~v~l~dP~g~~i~~~~~~~t~~~G~~~~~f~Lp~~~~~G~w~I~v~~~ 210 (1661)
T 2b39_A 139 TPGSTVLYRVFTVDHKLL--PVGQTVFITIETPDGIPVKRDSKSSQNQFGILTLSWNIPELVNMGVWKIKAYYE 210 (1661)
T ss_dssp CTTSEEEEEEEEECTTSC--CCCCCEEEEEEETTEEEEEEEEECTTTTTSCCEEEEECCSSCCCEEEEEEEEET
T ss_pred CCCCEEEEEEEEECCCCc--ccCceEEEEEECCCCCEEeeeeecccccCCeEeeeeeCCCCccccceEEEEEee
Confidence 367777776666654421 234679999999999998874333 345 4555543 579999998754
No 50
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=56.77 E-value=65 Score=32.64 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=37.7
Q ss_pred CCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeecCCEEEEEc---CCCceeeEEEEcCC
Q 028009 46 EGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKA---PRSGMYKFCFNNPY 111 (215)
Q Consensus 46 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~~g~f~f~~---~~~G~y~iCf~n~~ 111 (215)
||+.+.+..-+.+.+ ..+.+..+.+.|.||+|+.+.++.-...-..+|.. +..|.|++......
T Consensus 139 PGqtV~~rvi~~~~~--~~p~~~~~~v~i~dP~g~~i~~~~~~~~~~~~f~L~~~~~~G~w~I~v~~~~ 205 (1642)
T 3prx_B 139 PGSPVLYRVFSMDHN--TSKMNKTVIVEFQTPEGILVSSNSVDLNFFWPYNLPDLVSLGTWRIVAKYEH 205 (1642)
T ss_dssp TTCEEEEEEEECCC-------CCCEEEEEECSSCCEEEEEEECTTCCCEEECCSSCCCEEEEEEEEETT
T ss_pred CCCEEEEEEEEEcCC--CcccCceEEEEEECCCCCEEEEEEecccceEEEEcCCCCCceeEEEEEEeCC
Confidence 466665443333322 11235678999999999999886532222234433 45799999997543
No 51
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=56.43 E-value=44 Score=22.70 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=8.8
Q ss_pred CCchHHHHHHHHHHHHHHH
Q 028009 137 HLDPINVKIAELREALESV 155 (215)
Q Consensus 137 ~~~~l~~~l~~l~~~l~~i 155 (215)
.+..++.++..|.+.+.++
T Consensus 22 eI~~Ie~~I~eL~~iF~dl 40 (109)
T 3hd7_B 22 EIIKLENSIRELHDMFMDM 40 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555554444444433
No 52
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=54.01 E-value=28 Score=19.67 Aligned_cols=29 Identities=14% Similarity=-0.027 Sum_probs=17.4
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 028009 169 HRHTNESTRKRLLGYTIGEYVLLAMASAL 197 (215)
Q Consensus 169 ~~~~~es~~~rv~~~sii~i~vli~~~~~ 197 (215)
|.++-+.--..+.|.+++-++++++++++
T Consensus 13 hE~Ty~gFi~~~k~gt~~~~~~ll~maif 41 (43)
T 1qle_D 13 QQATFAGFIKGATWVSILSIAVLVFLALA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455667777777777777653
No 53
>3sd2_A Putative member of DUF3244 protein family; immunoglobulin-like beta-sandwich, structural genomics, JOIN for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron}
Probab=53.17 E-value=50 Score=22.33 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=33.6
Q ss_pred CCCeeEEEEcC-CCCeEeeeeeecCCEEEE--EcCCCceeeEEEEcCCC
Q 028009 67 HPGIDFTVTSP-AGNVVHTVKGTSGDKFEF--KAPRSGMYKFCFNNPYS 112 (215)
Q Consensus 67 ~~~i~~~I~~p-~g~~l~~~~~~~~g~f~f--~~~~~G~y~iCf~n~~~ 112 (215)
-+.+.++|.|. +|+.+|+.....-...+. ..+.+|+|.+=+.-...
T Consensus 44 ~~~vTItItNe~TG~~VYs~~~s~p~~i~IdLnge~sG~Y~IeI~~~~~ 92 (101)
T 3sd2_A 44 KDYAIITVTNKATGEIVHSKTYHNTSIVMIDMSSCEKGEYTIHIILNDC 92 (101)
T ss_dssp CSCEEEEEEETTTCCEEEEEEESSCSEEEEECTTSCSEEEEEEEEETTE
T ss_pred CCcEEEEEEECCCCcEEEEEeccCCcEEEEEcCCCcCceEEEEEEeCCc
Confidence 45799999986 799999876544444444 45779999988776554
No 54
>2k8e_A UPF0339 protein YEGP; protein structure initiative (PSI), northeast structur genomics consortium (NESG), ontario centre for structural P (OCSP); NMR {Escherichia coli} SCOP: d.348.1.1 d.348.1.1
Probab=52.64 E-value=42 Score=23.75 Aligned_cols=60 Identities=18% Similarity=0.328 Sum_probs=43.0
Q ss_pred CcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeee------------------cCCEEEEEcCCCceeeEEEE
Q 028009 47 GDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGT------------------SGDKFEFKAPRSGMYKFCFN 108 (215)
Q Consensus 47 ~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~------------------~~g~f~f~~~~~G~y~iCf~ 108 (215)
|-...+.|++-... +....+.+++++|++|.+++.- ..+.|.......|.|.+-+.
T Consensus 14 ~~~Mag~FEi~~~~------~G~~rfrLka~NGeiI~sSe~Y~sk~~a~~gI~sVk~na~~a~~fE~~~~~~G~~~f~Lk 87 (130)
T 2k8e_A 14 GVIMAGWFELSKSS------DNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSNSPQEERYEKKTASNGKFYFNLK 87 (130)
T ss_dssp CCCCCCEEEEEECT------TCCEEEEEECTTSCEEEECCCBSSHHHHHHHHHHHHHSSSCTTTEEEEEETTTEEEEEEE
T ss_pred cceeeeeEEEEEcC------CCCEEEEEEeCCCCEEEEcCCcCCHHHHHHHHHHHHhhccccchheeeeccCCCEEEEEE
Confidence 44455788886543 4579999999999999865431 13467777777888888887
Q ss_pred cCCC
Q 028009 109 NPYS 112 (215)
Q Consensus 109 n~~~ 112 (215)
....
T Consensus 88 a~Ng 91 (130)
T 2k8e_A 88 AANH 91 (130)
T ss_dssp CTTS
T ss_pred eCCC
Confidence 7665
No 55
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain, structural protein; 2.80A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Probab=52.62 E-value=27 Score=28.10 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=32.8
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|+|..+.-. .+...| ..+|++.+.|.|.+++.-..
T Consensus 142 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~p~~~G~y~i~V~~~g 189 (311)
T 1wlh_A 142 GDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRG 189 (311)
T ss_dssp CCCEEEEEECTTSCBCCCEEEEETTTEEEEEECCCSSEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCeeeEEEEECCCCEEEEEEECCCCEEEEEEEEECC
Confidence 4568999999998644322 334556 56778999999999997655
No 56
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A {Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Probab=52.23 E-value=13 Score=29.78 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=30.0
Q ss_pred CCeeEEEEcCCCCeEeeee-eecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 68 PGIDFTVTSPAGNVVHTVK-GTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 68 ~~i~~~I~~p~g~~l~~~~-~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
.++.+.|.+|+|..+.-.. +...| ..+|++.+.|.|.+|+.-..
T Consensus 131 ~~l~~~V~~psG~~~~~~v~~~~~g~y~v~f~P~e~G~h~v~V~~~g 177 (288)
T 2j3s_A 131 QDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKG 177 (288)
T ss_dssp CCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETT
T ss_pred CceEEEEECCCCCeeeeEEEeCCCCEEEEEEecccceeeEEEEEECC
Confidence 4688999999998664322 22233 56788999999999987543
No 57
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=51.15 E-value=1.1e+02 Score=30.40 Aligned_cols=64 Identities=23% Similarity=0.293 Sum_probs=40.4
Q ss_pred CCcEEEEEEEEEeCccccCCCCCCe-eEEEEcCCCCeEeeeeee--cCCEE--EEEc---CCCceeeEEEEcCC
Q 028009 46 EGDTVAGNFVVVDHDIFWSTDHPGI-DFTVTSPAGNVVHTVKGT--SGDKF--EFKA---PRSGMYKFCFNNPY 111 (215)
Q Consensus 46 ~~~~i~~~y~v~~~~~~~~~~~~~i-~~~I~~p~g~~l~~~~~~--~~g~f--~f~~---~~~G~y~iCf~n~~ 111 (215)
||+.+.+..-+.+.+- .+....+ .++|.||+|+.+.++... ..|.+ +|.. +..|.|+|-.....
T Consensus 117 Pgq~V~~rv~~~~~~~--~p~~~~~~~v~i~dp~g~~i~~~~~~~~~~G~~~~~f~L~~~~~~G~w~I~~~~~~ 188 (1451)
T 4acq_A 117 PGQTVKFRVVSMDENF--HPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS 188 (1451)
T ss_dssp TTCEEEEEEEEECTTC--CBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred CCCEEEEEEEEECCCC--cCccCceeEEEEECCCCCEEEEeeeccCCCCeEEEEeECCCCCCceeEEEEEEecC
Confidence 5677766555554431 1223344 589999999999886532 35643 3432 56899999998654
No 58
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=49.78 E-value=37 Score=19.90 Aligned_cols=28 Identities=7% Similarity=-0.120 Sum_probs=16.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 028009 170 RHTNESTRKRLLGYTIGEYVLLAMASAL 197 (215)
Q Consensus 170 ~~~~es~~~rv~~~sii~i~vli~~~~~ 197 (215)
.++-+.--..+.|.+++-++++++++++
T Consensus 22 e~Ty~gFi~~~k~gt~~~~~~ll~laif 49 (51)
T 1m56_D 22 EKTFAGFVRMVTWAAVVIVAALIFLALA 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445666677777777776654
No 59
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=49.06 E-value=42 Score=20.33 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=35.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 028009 135 DEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180 (215)
Q Consensus 135 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 180 (215)
++.++.+...+.+|.+....|-+|.+.....-......++++..++
T Consensus 8 D~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l 53 (65)
T 1gl2_D 8 DAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKL 53 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999998888777766666666666666654
No 60
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=48.24 E-value=37 Score=19.45 Aligned_cols=27 Identities=7% Similarity=0.252 Sum_probs=13.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 028009 138 LDPINVKIAELREALESVVSEQKYLRA 164 (215)
Q Consensus 138 ~~~l~~~l~~l~~~l~~i~~~q~~~~~ 164 (215)
++.++..++.|+..+..+..+..-.+.
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~~ssq~ 33 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEYNATQM 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544443333
No 61
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10
Probab=47.55 E-value=34 Score=25.87 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=32.5
Q ss_pred CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|+|..+.-. .+...| ..+|++.+.|.|.+-+.-..
T Consensus 43 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~p~~~G~~~i~V~~~g 90 (212)
T 1qfh_A 43 GDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRG 90 (212)
T ss_dssp CCCEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEETT
T ss_pred CCeEEEEEECCCCCEeeeEEEECCCcEEEEEEECcCcEEEEEEEEECC
Confidence 4579999999998654432 234456 56678899999999887555
No 62
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A {Streptococcus pyogenes}
Probab=46.64 E-value=26 Score=24.45 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=32.2
Q ss_pred CCeeEEEEcCCCCeEeeeeeecCCEEEEEcCCCceeeEEEEcCC
Q 028009 68 PGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 68 ~~i~~~I~~p~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~ 111 (215)
.+..|.|++.+|+.+..+. ..|.+.+.-...|.|.+.=.--.
T Consensus 43 ~GA~F~l~~~~g~~v~~~~--sdG~~~~~~L~~G~Y~l~EtkAP 84 (121)
T 2x5p_A 43 AGATMELRDSSGKTISTWI--SDGQVKDFYLMPGKYTFVETAAP 84 (121)
T ss_dssp CCCEEEEECTTSCEEEEEE--CCSSCEEEEECSEEEEEEEEECC
T ss_pred CCCEEEEEECCCCEEEEEE--eCCEEEEcccCCcEEEEEEEeCC
Confidence 4788999999999886554 56888888888899888654433
No 63
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=44.96 E-value=58 Score=20.77 Aligned_cols=46 Identities=26% Similarity=0.272 Sum_probs=35.1
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 028009 135 DEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180 (215)
Q Consensus 135 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 180 (215)
++.++.+...+.+|.+....|-+|.+....--...-..++++..++
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L 63 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRL 63 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999888776666666666666666554
No 64
>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940}
Probab=38.96 E-value=36 Score=23.05 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=29.7
Q ss_pred CeeEEEEcCCCCeEeeeeeecCCEEEEEcCCCce---eeEEEE
Q 028009 69 GIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGM---YKFCFN 108 (215)
Q Consensus 69 ~i~~~I~~p~g~~l~~~~~~~~g~f~f~~~~~G~---y~iCf~ 108 (215)
+=.+.|+|.+|.++........+.-++-+.++|. +++||.
T Consensus 49 ~~~lrI~D~~G~vi~~~~~~a~~~~~vLa~~g~n~lGW~Ley~ 91 (106)
T 3fn2_A 49 RGYVRITDKDGQVITYEDGSVQDKTVFLTNEGANKLGWKLEFL 91 (106)
T ss_dssp TCEEEEECTTSCBCSCCCSCSTTEEEEEEECSCCTTCCEEEEE
T ss_pred CCcEEEEcCCCCEEecCCCCcCcceeehhhcCCCccceEEEEE
Confidence 4468899999998885555566788888877775 577764
No 65
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=38.58 E-value=1e+02 Score=27.08 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=39.7
Q ss_pred CCCeeEEEEcCCCCeEeeeeee--cCCEEEEEcCCCceeeEEEEcCCCCCeEEEEEEEE
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGT--SGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHV 123 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~--~~g~f~f~~~~~G~y~iCf~n~~~~~~~V~f~i~~ 123 (215)
..++++.|++|+|..+...... ...+..+..+..|+|.+-+...... ....|++.+
T Consensus 458 ~~dldl~l~~p~G~~~~~~~~~~~~~E~v~~~~~~~G~y~i~V~~~~~s-g~y~~~l~~ 515 (539)
T 3afg_A 458 GSDLDLYLYDPNGNQVDYSYTAYYGFEKVGYYNPTAGTWTIKVVSYSGS-ANYQVDVVS 515 (539)
T ss_dssp TCEEEEEEECTTSCEEEEECCSSBSCEEEEEESCCSEEEEEEEEEEESC-EEEEEEEEE
T ss_pred CCCeEEEEECCCCCEeeccccCCCceeEEEECCCCCEEEEEEEEeccCC-ceEEEEEEE
Confidence 4689999999999987554321 2235778888999999999876542 345555555
No 66
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=37.25 E-value=61 Score=20.56 Aligned_cols=30 Identities=7% Similarity=0.231 Sum_probs=15.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028009 137 HLDPINVKIAELREALESVVSEQKYLRARD 166 (215)
Q Consensus 137 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re 166 (215)
.++.++..|+.|+.++..+..+..-.+.+-
T Consensus 8 Kv~~LE~sld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 8 KVTRMESSVDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444333
No 67
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A {Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Probab=36.71 E-value=1.5e+02 Score=23.33 Aligned_cols=44 Identities=9% Similarity=0.243 Sum_probs=31.2
Q ss_pred CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009 67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~ 111 (215)
...+.+.|.+|.+-.+. -.+...| ..+|+++..|.|.+-+.-..
T Consensus 36 ~g~l~v~i~~p~~~~~~-~~d~~dGty~v~y~p~~~G~y~i~V~~~g 81 (288)
T 2j3s_A 36 YGGLSLSIEGPSKVDIN-TEDLEDGTCRVTYCPTEPGNYIINIKFAD 81 (288)
T ss_dssp SCCEEEEEESSSCCEEE-EEECTTSEEEEEEECSSCEEEEEEEEETT
T ss_pred CCcEEEEEECCCCceeE-EEECCCCEEEEEEECCCCeEEEEEEEECC
Confidence 34688888888875442 2334566 56788999999998887554
No 68
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=31.77 E-value=87 Score=18.89 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=32.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 028009 136 EHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180 (215)
Q Consensus 136 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 180 (215)
+.++.+...+.+|......|-.|.+.....-......++++..++
T Consensus 10 ~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l 54 (66)
T 1n7s_D 10 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRI 54 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456778888888888888888887776666666666666666654
No 69
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=30.10 E-value=99 Score=19.93 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 028009 136 EHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180 (215)
Q Consensus 136 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 180 (215)
+.++.|...+.+|......|-.|.+.....-.+....++++..++
T Consensus 29 ~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl 73 (87)
T 1sfc_D 29 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRI 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456667777777777777777777776666666666666666664
No 70
>4div_A ORF48; distal tail protein, receptor-binding protein, phage basepla adsorption apparatus, genome injection device, viral protei; 3.80A {Lactococcus phage tp901-1}
Probab=29.30 E-value=2.2e+02 Score=22.89 Aligned_cols=124 Identities=12% Similarity=0.012 Sum_probs=63.5
Q ss_pred EEEEEEEeCccccCCCCCCeeEEEEcC--CCC-eEee---eeeecCCEEEEEcCC-----CceeeEEE--EcCCCC----
Q 028009 51 AGNFVVVDHDIFWSTDHPGIDFTVTSP--AGN-VVHT---VKGTSGDKFEFKAPR-----SGMYKFCF--NNPYST---- 113 (215)
Q Consensus 51 ~~~y~v~~~~~~~~~~~~~i~~~I~~p--~g~-~l~~---~~~~~~g~f~f~~~~-----~G~y~iCf--~n~~~~---- 113 (215)
.+...+...+.++.-+...+.|....| .|. .+.+ .-+...|.|.|+.+. .|+-+-=| ......
T Consensus 31 vi~v~IvENG~PyDLTG~tV~Fe~v~p~~~G~~ii~q~v~IvDAknG~f~YTf~~qA~Q~~G~~~AyFSI~k~eg~~~Ie 110 (299)
T 4div_A 31 AIVAQIVENGQPKNFEGLQPFFCLMAQEATGQGVSEESVVSFDAKNGTLKYVASDNALQFVGRNEAYFSFRKQEGGRWIE 110 (299)
T ss_dssp EEEEEEEETTEECCCTTCEEEEEECCCTTTCCCCEEEECSEEETTTTEEEEECCTTTTSSSEEEEEEEEEEEESSSSEEE
T ss_pred EEEEEEeECCEEEcCCCCEEEEEEecCCCCCCeeEeeccEEEeCCCCEEEEEeCHHHHhhcCcEEEEEEEEcCCCCceec
Confidence 344455555555433344455555556 555 3332 235678999998654 45533223 232221
Q ss_pred -CeEEEEEEEEccCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 028009 114 -PETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTR 177 (215)
Q Consensus 114 -~~~V~f~i~~~~~~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~ 177 (215)
.-+-+|++.+.......++...+-+.+++..+..+++.+++.+.+.+ .--+..++++++..
T Consensus 111 ~~STqdF~y~V~kdi~~~~I~~~sYI~~FEdL~~~~~~yI~e~k~~~e---~w~es~keil~sID 172 (299)
T 4div_A 111 QFSTRTFHYIVEKSIYSQPFKDSNYWWTFKELYRIFNKYIEDGKKSWE---QFVEANREILESID 172 (299)
T ss_dssp EEECCCEEEEEECCSCCCCCBCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTHHHHHSSS
T ss_pred ccccccEEEEEEcchhhcCCCccchhhhHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHhC
Confidence 13456777776553333333344455666666666666666665544 22334444555443
No 71
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=27.91 E-value=67 Score=16.37 Aligned_cols=20 Identities=5% Similarity=0.224 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 028009 139 DPINVKIAELREALESVVSE 158 (215)
Q Consensus 139 ~~l~~~l~~l~~~l~~i~~~ 158 (215)
..+++.+++|+..++.+...
T Consensus 2 srlee~~r~l~~ivq~lq~r 21 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQER 21 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 35667777777666655543
No 72
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=26.15 E-value=19 Score=17.04 Aligned_cols=11 Identities=9% Similarity=0.286 Sum_probs=8.5
Q ss_pred HHHHhhccccc
Q 028009 201 YIRKLFSKSVA 211 (215)
Q Consensus 201 ~lk~fF~~Kk~ 211 (215)
.|.+||+++|.
T Consensus 9 SLqRFleKRk~ 19 (21)
T 3ogl_Q 9 SLHRFLEKRKD 19 (26)
T ss_pred HHHHHHHHhhc
Confidence 57888888774
No 73
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=25.30 E-value=1.2e+02 Score=18.46 Aligned_cols=20 Identities=0% Similarity=0.109 Sum_probs=15.9
Q ss_pred CCCeeEEEEcCCCCeEeeee
Q 028009 67 HPGIDFTVTSPAGNVVHTVK 86 (215)
Q Consensus 67 ~~~i~~~I~~p~g~~l~~~~ 86 (215)
+....+.+.++||++|.+++
T Consensus 10 ~G~frfrLka~NGevI~sSe 29 (64)
T 3bid_A 10 KGEYRWRLKAANHEIIAQGE 29 (64)
T ss_dssp TSCEEEEEECTTSCEEEECC
T ss_pred CCCEEEEEEeCCCCEEEECC
Confidence 45688999999999888655
No 74
>2lsj_B DNA polymerase kappa; REV1, RIR, POL kappa, translesion synthesis, TLS, CTD, prote binding-protein binding complex; HET: DNA; NMR {Mus musculus}
Probab=30.86 E-value=15 Score=18.19 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=7.5
Q ss_pred HHHhhccccc
Q 028009 202 IRKLFSKSVA 211 (215)
Q Consensus 202 lk~fF~~Kk~ 211 (215)
=++||.+|++
T Consensus 6 K~SFFdKKRs 15 (26)
T 2lsj_B 6 KKSFFDKKRS 15 (26)
Confidence 4688888875
No 75
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.45 E-value=1.7e+02 Score=22.77 Aligned_cols=39 Identities=13% Similarity=0.317 Sum_probs=24.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 028009 136 EHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNE 174 (215)
Q Consensus 136 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~e 174 (215)
..+|.+++.+..|++.+.+|.....-...|-....+.++
T Consensus 6 sRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~ 44 (233)
T 2yko_A 6 SRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQ 44 (233)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999887654443333333333333
No 76
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=30.22 E-value=16 Score=18.49 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhcceEE
Q 028009 13 YMILALLMSLIGRLSSL 29 (215)
Q Consensus 13 ~~~~~~~~~~~~~~~~l 29 (215)
+|++.+|.++..++.++
T Consensus 8 iFlLaLlscLt~Pasa~ 24 (27)
T 2lif_A 8 IFLLALLSCITVPVSAA 24 (27)
Confidence 34444555677776664
No 77
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=23.58 E-value=1.8e+02 Score=19.96 Aligned_cols=67 Identities=21% Similarity=0.193 Sum_probs=45.3
Q ss_pred CcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeecCC---EEEEEcCCCceeeEEEEcCC
Q 028009 35 DVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGD---KFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 35 ~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~~g---~f~f~~~~~G~y~iCf~n~~ 111 (215)
....|..++++ ...|.+.+.-. . ..++...+++.+++.+.... .+| .-+|.+..+|.|-+.+..-.
T Consensus 37 d~D~y~F~V~~-~g~v~I~l~~~--~------~~~~~w~ly~~~~nyv~y~~--~~gn~~~~~~~~~~pGkYYl~Vy~y~ 105 (121)
T 3jqw_A 37 DQDYFYFDVIT-PGEVKIDINKL--G------YGGATWVVYDENNNAVSYAT--DDGQNLSGKFKADKPGRYYIHLYMFN 105 (121)
T ss_dssp CCEEEEEEESS-CEEEEEEEEEC--S------SSEEEEEEECTTSCEEEECE--ECSSEEEEEEEECSCEEEEEEEEEEE
T ss_pred CeeEEEEEeCC-CCeEEEEEEec--C------CCcEEEEEEeCCCCeEEEec--cCCCEEEEEEEeCCCeeEEEEEEEec
Confidence 46799999997 55676665432 1 45788889887776554433 223 24466778999999998754
Q ss_pred C
Q 028009 112 S 112 (215)
Q Consensus 112 ~ 112 (215)
.
T Consensus 106 ~ 106 (121)
T 3jqw_A 106 G 106 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 78
>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown functio protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.348.1.1 d.348.1.1
Probab=23.47 E-value=1.6e+02 Score=20.28 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=33.9
Q ss_pred EEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeee------------------cCCEEEEEcCCCceeeEEEEcCC
Q 028009 52 GNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGT------------------SGDKFEFKAPRSGMYKFCFNNPY 111 (215)
Q Consensus 52 ~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~------------------~~g~f~f~~~~~G~y~iCf~n~~ 111 (215)
+.|++-... +....+.++.+||++|.+++.- ....|.......|.|.+=+....
T Consensus 3 g~FEi~~~~------~g~~rFrLka~NgeiI~sSe~Y~sk~~a~~gI~sVk~na~~~~~fe~~~~~~gk~yF~Lka~N 74 (118)
T 2k49_A 3 GWYELSKSS------NDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAAN 74 (118)
T ss_dssp CEEEEEECT------TSCEEEEEECSSSCEEEECCCBSSHHHHHHHHHHHHHHTTCGGGEEEEEETTTEEEEEEECTT
T ss_pred ceEEEEEcC------CCCEEEEEEECCCCEEEECCCcCCHHHHHHHHHHHHHhCcccceEEEEEccCCCEEEEEEcCC
Confidence 456665432 4568999999999999865431 11256666666666665554443
No 79
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=22.31 E-value=1.1e+02 Score=17.22 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 028009 140 PINVKIAELREALESVVSE 158 (215)
Q Consensus 140 ~l~~~l~~l~~~l~~i~~~ 158 (215)
.++++|..|+.++..+...
T Consensus 20 ~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 20 DFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566666665555543
No 80
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=21.64 E-value=1.7e+02 Score=24.01 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=29.6
Q ss_pred CCeeEEEEcCCCCeEe------eeeeecCCEEEEEcCCCceeeEEE
Q 028009 68 PGIDFTVTSPAGNVVH------TVKGTSGDKFEFKAPRSGMYKFCF 107 (215)
Q Consensus 68 ~~i~~~I~~p~g~~l~------~~~~~~~g~f~f~~~~~G~y~iCf 107 (215)
.+..|.|++++|..+. ...-...|.+.|.....|.|.+==
T Consensus 267 ~GA~F~l~~~~g~~~~~~~~~~~~~td~~G~~~~~~L~~G~Y~l~E 312 (355)
T 3kpt_A 267 KGAEFVLKDNNGKIVVVAGKEVTGVSDENGVIKWSNIPYGDYQIFE 312 (355)
T ss_dssp SCCEEEEEETTSCBCBSSSSBCEEECCTTSEEEEEEEESSEEEEEE
T ss_pred CCCEEEEEeCCCCEEEeccceEEEEECCCCeEEECcCCCceEEEEE
Confidence 4788999999998775 233345788888877788887654
No 81
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=20.88 E-value=1.8e+02 Score=18.85 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHH
Q 028009 151 ALESVVSEQKYLRARDTRHRHTNESTRKRLLGYT 184 (215)
Q Consensus 151 ~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~s 184 (215)
.++.+.+.-+-+......++..+...+.+ +||-
T Consensus 34 kL~~L~~kt~~L~~~s~~F~~~A~~l~rk-mwwk 66 (91)
T 3hd7_A 34 KLSELDDRADALQAGASQFETSAAKLKRK-YWWK 66 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 33444444444455555555566555555 4443
No 82
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=20.52 E-value=1.1e+02 Score=19.68 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=16.6
Q ss_pred CCCeeEEEEcCCC-CeEeeeeeecCCEEEEEc
Q 028009 67 HPGIDFTVTSPAG-NVVHTVKGTSGDKFEFKA 97 (215)
Q Consensus 67 ~~~i~~~I~~p~g-~~l~~~~~~~~g~f~f~~ 97 (215)
+-.|.|.+++-.. -.+....-..+|.++|++
T Consensus 17 gA~Vefe~yNyae~~~~~~~~TD~~G~~s~~~ 48 (82)
T 3e8v_A 17 DATVEFKVYNYAEFYTVATKHTDRSGHASLTA 48 (82)
T ss_dssp TCEEEEEEEETTEEEEEEEEECCTTSEEEEEC
T ss_pred CCEEEEEEEEchheeEEEEEEECCCceEEEEE
Confidence 3456777766311 112222334678888887
Done!