Query 028010
Match_columns 215
No_of_seqs 195 out of 1825
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:53:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0118 HisH Glutamine amidotr 100.0 2.6E-49 5.6E-54 315.5 15.9 188 1-212 2-194 (204)
2 PLN02832 glutamine amidotransf 100.0 5.9E-48 1.3E-52 321.3 19.9 209 1-215 2-210 (248)
3 PRK13142 hisH imidazole glycer 100.0 4.7E-40 1E-44 265.1 15.6 176 2-212 1-179 (192)
4 COG0311 PDX2 Predicted glutami 100.0 9.5E-39 2.1E-43 250.4 17.4 185 1-215 1-186 (194)
5 CHL00188 hisH imidazole glycer 100.0 9.4E-39 2E-43 261.9 17.2 194 1-211 2-200 (210)
6 PRK13526 glutamine amidotransf 100.0 3.5E-37 7.6E-42 244.8 18.0 174 1-215 3-176 (179)
7 PF01174 SNO: SNO glutamine am 100.0 4E-37 8.6E-42 243.7 16.0 178 5-215 1-182 (188)
8 PRK14004 hisH imidazole glycer 100.0 1.1E-36 2.4E-41 249.6 17.6 192 2-212 1-201 (210)
9 PRK13170 hisH imidazole glycer 100.0 5.8E-36 1.3E-40 243.3 16.1 182 1-211 1-187 (196)
10 TIGR03800 PLP_synth_Pdx2 pyrid 100.0 1.6E-35 3.5E-40 238.3 17.9 182 2-215 1-182 (184)
11 PRK13146 hisH imidazole glycer 100.0 2E-35 4.4E-40 242.3 17.4 187 1-210 2-197 (209)
12 PRK13525 glutamine amidotransf 100.0 5.7E-35 1.2E-39 236.2 18.2 180 1-215 2-183 (189)
13 cd01749 GATase1_PB Glutamine A 100.0 1.2E-34 2.7E-39 233.1 17.1 179 3-215 1-182 (183)
14 PRK13181 hisH imidazole glycer 100.0 4.1E-34 8.9E-39 232.9 17.2 184 2-210 1-189 (199)
15 PRK13152 hisH imidazole glycer 100.0 6.5E-33 1.4E-37 226.2 15.4 185 2-210 1-191 (201)
16 PRK13527 glutamine amidotransf 100.0 1.4E-31 2.9E-36 218.3 17.8 183 1-215 1-193 (200)
17 cd01748 GATase1_IGP_Synthase T 100.0 6E-32 1.3E-36 219.9 14.9 186 3-211 1-191 (198)
18 PLN02617 imidazole glycerol ph 100.0 5.9E-32 1.3E-36 247.4 16.4 188 2-210 8-199 (538)
19 KOG0623 Glutamine amidotransfe 100.0 3.3E-32 7.1E-37 230.9 12.5 190 2-212 3-199 (541)
20 PRK13143 hisH imidazole glycer 100.0 1.4E-31 3.1E-36 218.2 15.4 182 1-209 1-186 (200)
21 TIGR01855 IMP_synth_hisH imida 100.0 1.7E-30 3.6E-35 211.2 15.4 180 3-209 1-185 (196)
22 PRK13141 hisH imidazole glycer 100.0 2.6E-30 5.6E-35 211.4 15.9 186 2-210 1-191 (205)
23 KOG3210 Imidazoleglycerol-phos 100.0 4.3E-29 9.2E-34 193.0 9.6 192 2-215 13-215 (226)
24 PRK06895 putative anthranilate 100.0 2.8E-28 6E-33 197.3 13.7 165 1-210 2-178 (190)
25 PRK06490 glutamine amidotransf 100.0 3.2E-28 6.8E-33 203.4 14.1 169 1-208 8-184 (239)
26 PRK08250 glutamine amidotransf 100.0 5.2E-28 1.1E-32 201.7 13.0 172 1-208 1-185 (235)
27 PRK07053 glutamine amidotransf 100.0 4.2E-28 9E-33 202.1 11.4 167 2-208 4-183 (234)
28 PRK05665 amidotransferase; Pro 99.9 4.8E-27 1E-31 196.3 14.9 169 1-208 3-191 (240)
29 cd01742 GATase1_GMP_Synthase T 99.9 3.6E-27 7.7E-32 188.9 11.9 160 3-208 1-170 (181)
30 COG0518 GuaA GMP synthase - Gl 99.9 2.3E-27 4.9E-32 192.6 10.2 168 2-209 3-181 (198)
31 TIGR00888 guaA_Nterm GMP synth 99.9 4.3E-27 9.4E-32 189.9 11.1 160 3-208 1-170 (188)
32 PRK09065 glutamine amidotransf 99.9 2.2E-27 4.8E-32 198.2 9.4 171 1-208 2-191 (237)
33 PRK00758 GMP synthase subunit 99.9 1.2E-26 2.7E-31 186.6 11.2 157 3-208 2-167 (184)
34 cd01743 GATase1_Anthranilate_S 99.9 3.6E-25 7.8E-30 178.0 14.4 159 3-207 1-172 (184)
35 PRK07765 para-aminobenzoate sy 99.9 2.1E-25 4.7E-30 183.5 13.0 161 1-206 1-176 (214)
36 PRK06774 para-aminobenzoate sy 99.9 4.6E-25 1E-29 178.5 14.2 167 2-210 1-181 (191)
37 PLN02347 GMP synthetase 99.9 2.5E-25 5.4E-30 204.1 13.4 164 2-208 12-188 (536)
38 PF00117 GATase: Glutamine ami 99.9 9E-26 2E-30 182.2 7.8 166 4-210 1-180 (192)
39 PRK07567 glutamine amidotransf 99.9 3.5E-25 7.6E-30 185.4 11.1 170 1-208 2-195 (242)
40 cd01741 GATase1_1 Subgroup of 99.9 6.5E-25 1.4E-29 176.9 11.7 167 2-204 1-180 (188)
41 CHL00101 trpG anthranilate syn 99.9 2.9E-24 6.3E-29 173.8 14.5 159 3-207 2-174 (190)
42 PRK07649 para-aminobenzoate/an 99.9 4.4E-24 9.4E-29 173.4 14.3 158 3-206 2-172 (195)
43 COG0512 PabA Anthranilate/para 99.9 2E-23 4.3E-28 166.1 15.7 159 1-205 2-174 (191)
44 PRK05670 anthranilate synthase 99.9 1.6E-23 3.4E-28 169.3 15.1 159 2-206 1-172 (189)
45 TIGR01815 TrpE-clade3 anthrani 99.9 5.3E-24 1.1E-28 200.7 14.0 159 1-205 517-688 (717)
46 PRK08007 para-aminobenzoate sy 99.9 2E-23 4.3E-28 168.5 14.6 161 3-210 2-177 (187)
47 PRK00074 guaA GMP synthase; Re 99.9 4.3E-24 9.4E-29 195.7 10.8 161 2-208 5-175 (511)
48 TIGR00566 trpG_papA glutamine 99.9 5.6E-23 1.2E-27 166.0 14.8 160 2-206 1-173 (188)
49 PRK05637 anthranilate synthase 99.9 7.9E-23 1.7E-27 167.5 14.6 168 1-208 2-191 (208)
50 PRK08857 para-aminobenzoate sy 99.9 2.2E-22 4.8E-27 163.2 15.0 165 2-207 1-178 (193)
51 PRK13566 anthranilate synthase 99.9 2.8E-22 6.1E-27 189.3 15.4 160 1-206 527-699 (720)
52 PLN02335 anthranilate synthase 99.9 7.7E-22 1.7E-26 163.3 14.7 166 1-207 19-198 (222)
53 cd01744 GATase1_CPSase Small c 99.9 4E-21 8.6E-26 153.9 15.9 154 3-208 1-166 (178)
54 cd01747 GATase1_Glutamyl_Hydro 99.9 1.1E-21 2.4E-26 166.9 8.8 158 14-207 24-216 (273)
55 TIGR01737 FGAM_synth_I phospho 99.8 5.3E-21 1.2E-25 158.8 10.3 87 1-87 1-94 (227)
56 PRK09522 bifunctional glutamin 99.8 4.4E-20 9.5E-25 169.7 13.9 161 1-208 2-176 (531)
57 PRK03619 phosphoribosylformylg 99.8 5.2E-20 1.1E-24 152.0 12.3 99 1-111 1-107 (219)
58 PRK12564 carbamoyl phosphate s 99.8 4.1E-19 8.8E-24 156.1 16.9 155 1-207 178-344 (360)
59 cd01745 GATase1_2 Subgroup of 99.8 5.3E-20 1.1E-24 148.8 10.0 131 14-208 23-176 (189)
60 TIGR01368 CPSaseIIsmall carbam 99.8 5.8E-19 1.3E-23 154.9 16.0 83 2-90 175-262 (358)
61 PLN02771 carbamoyl-phosphate s 99.8 5.8E-19 1.3E-23 156.5 15.6 153 2-207 242-406 (415)
62 PRK14607 bifunctional glutamin 99.8 2.1E-19 4.5E-24 165.8 13.2 159 3-207 2-174 (534)
63 TIGR01823 PabB-fungal aminodeo 99.8 7.6E-19 1.6E-23 167.0 15.7 164 1-208 6-189 (742)
64 PRK12838 carbamoyl phosphate s 99.8 2.3E-18 5E-23 150.9 17.1 83 1-89 168-255 (354)
65 CHL00197 carA carbamoyl-phosph 99.8 9.1E-18 2E-22 148.2 17.9 84 1-89 193-281 (382)
66 PRK01175 phosphoribosylformylg 99.8 4.9E-18 1.1E-22 143.4 15.2 85 1-87 4-105 (261)
67 cd03130 GATase1_CobB Type 1 gl 99.8 3E-18 6.5E-23 139.5 13.2 113 8-133 9-124 (198)
68 COG0047 PurL Phosphoribosylfor 99.8 3.6E-18 7.8E-23 138.8 11.5 99 1-111 3-109 (231)
69 PLN02889 oxo-acid-lyase/anthra 99.8 7E-18 1.5E-22 161.7 14.2 139 1-178 82-243 (918)
70 KOG3179 Predicted glutamine sy 99.8 1.3E-18 2.7E-23 138.7 6.9 173 2-209 6-198 (245)
71 PRK11366 puuD gamma-glutamyl-g 99.8 3.1E-18 6.7E-23 144.5 9.2 166 14-208 30-228 (254)
72 COG0505 CarA Carbamoylphosphat 99.7 5E-17 1.1E-21 139.8 14.9 155 2-207 181-346 (368)
73 PRK05368 homoserine O-succinyl 99.7 3.7E-17 7.9E-22 140.2 12.7 165 1-208 36-241 (302)
74 PF07722 Peptidase_C26: Peptid 99.7 3.5E-17 7.5E-22 135.1 7.7 160 14-204 28-217 (217)
75 cd01750 GATase1_CobQ Type 1 gl 99.7 2.7E-16 5.9E-21 127.6 12.1 105 3-108 1-113 (194)
76 PRK06186 hypothetical protein; 99.7 4.3E-17 9.2E-22 134.6 6.6 83 2-89 3-100 (229)
77 PF13507 GATase_5: CobB/CobQ-l 99.7 9.1E-16 2E-20 129.4 12.1 190 2-214 3-237 (259)
78 cd01740 GATase1_FGAR_AT Type 1 99.7 1.6E-15 3.4E-20 126.9 12.7 84 3-87 1-98 (238)
79 KOG1622 GMP synthase [Nucleoti 99.6 2.2E-16 4.8E-21 138.6 5.0 162 2-209 18-191 (552)
80 PRK06278 cobyrinic acid a,c-di 99.6 2.2E-15 4.8E-20 136.7 9.9 98 1-107 1-105 (476)
81 TIGR00337 PyrG CTP synthase. C 99.6 6.1E-15 1.3E-19 134.1 12.0 84 2-90 291-391 (525)
82 PRK05380 pyrG CTP synthetase; 99.6 1.7E-15 3.7E-20 137.7 8.1 84 2-90 290-391 (533)
83 cd01746 GATase1_CTP_Synthase T 99.6 1.9E-14 4E-19 120.1 12.4 84 2-90 2-103 (235)
84 COG2071 Predicted glutamine am 99.6 3.7E-15 8.1E-20 122.5 6.8 167 14-210 30-224 (243)
85 PLN02327 CTP synthase 99.5 1.6E-13 3.5E-18 125.2 14.2 95 2-107 299-421 (557)
86 COG0504 PyrG CTP synthase (UTP 99.5 7.8E-14 1.7E-18 124.3 9.4 83 2-89 290-390 (533)
87 KOG0026 Anthranilate synthase, 99.5 7.4E-13 1.6E-17 102.8 12.5 161 3-205 21-197 (223)
88 PRK00784 cobyric acid synthase 99.5 3E-13 6.6E-18 123.9 11.6 106 2-108 253-367 (488)
89 PRK01077 cobyrinic acid a,c-di 99.5 6.1E-13 1.3E-17 120.8 13.0 107 2-108 247-359 (451)
90 TIGR00379 cobB cobyrinic acid 99.5 6.6E-13 1.4E-17 120.5 12.7 106 2-108 246-357 (449)
91 TIGR01857 FGAM-synthase phosph 99.5 4.9E-13 1.1E-17 132.0 12.1 87 1-87 978-1090(1239)
92 PLN03206 phosphoribosylformylg 99.4 1E-12 2.2E-17 130.5 10.6 87 1-87 1038-1142(1307)
93 PRK13896 cobyrinic acid a,c-di 99.4 3.5E-12 7.5E-17 114.8 11.9 105 2-108 235-345 (433)
94 PF07685 GATase_3: CobB/CobQ-l 99.4 3.5E-12 7.5E-17 100.3 9.1 76 33-108 3-84 (158)
95 PRK05297 phosphoribosylformylg 99.3 9.5E-12 2E-16 124.5 13.2 87 1-87 1036-1140(1290)
96 TIGR01735 FGAM_synt phosphorib 99.3 1.7E-11 3.6E-16 122.6 14.6 88 1-88 1056-1161(1310)
97 TIGR00313 cobQ cobyric acid sy 99.3 1.3E-11 2.9E-16 112.7 11.1 105 2-108 249-361 (475)
98 KOG0370 Multifunctional pyrimi 99.3 9.3E-11 2E-15 111.0 15.4 82 2-90 174-259 (1435)
99 PHA03366 FGAM-synthase; Provis 99.3 4.5E-11 9.7E-16 119.6 13.7 86 2-87 1030-1133(1304)
100 COG1797 CobB Cobyrinic acid a, 99.3 5.3E-11 1.2E-15 105.5 11.5 106 2-107 247-359 (451)
101 KOG2387 CTP synthase (UTP-ammo 99.2 1.7E-11 3.8E-16 108.0 6.3 90 8-108 310-423 (585)
102 COG3442 Predicted glutamine am 99.2 3.2E-10 6.9E-15 91.9 11.6 96 9-107 20-123 (250)
103 cd03146 GAT1_Peptidase_E Type 99.2 1E-10 2.2E-15 96.2 7.9 107 2-109 33-158 (212)
104 COG1492 CobQ Cobyric acid synt 99.1 4.5E-10 9.7E-15 101.2 11.2 105 2-108 253-367 (486)
105 TIGR01739 tegu_FGAM_synt herpe 99.1 6.2E-10 1.3E-14 111.0 13.1 86 2-87 931-1034(1202)
106 KOG1224 Para-aminobenzoate (PA 99.1 3.1E-09 6.8E-14 95.8 13.2 162 2-206 16-201 (767)
107 PRK05282 (alpha)-aspartyl dipe 98.9 1.5E-08 3.2E-13 84.5 10.8 108 2-109 33-157 (233)
108 TIGR01382 PfpI intracellular p 98.8 1.9E-08 4.2E-13 79.0 8.9 84 2-87 1-108 (166)
109 KOG1559 Gamma-glutamyl hydrola 98.8 1.1E-08 2.4E-13 84.4 7.5 74 14-89 81-165 (340)
110 PF09825 BPL_N: Biotin-protein 98.8 4.4E-07 9.5E-12 80.1 15.6 106 1-108 1-125 (367)
111 PRK11780 isoprenoid biosynthes 98.7 6.7E-08 1.4E-12 79.8 9.7 87 2-88 3-145 (217)
112 cd03134 GATase1_PfpI_like A ty 98.7 4.9E-08 1.1E-12 76.6 8.4 84 2-87 1-110 (165)
113 cd03132 GATase1_catalase Type 98.7 1.3E-07 2.9E-12 72.4 10.1 86 1-87 2-111 (142)
114 cd03169 GATase1_PfpI_1 Type 1 98.7 8.4E-08 1.8E-12 76.6 9.0 84 2-87 1-124 (180)
115 cd03144 GATase1_ScBLP_like Typ 98.7 8.8E-08 1.9E-12 71.1 7.1 79 3-84 2-90 (114)
116 cd01653 GATase1 Type 1 glutami 98.6 2E-07 4.4E-12 65.9 8.6 81 3-84 1-92 (115)
117 COG0693 ThiJ Putative intracel 98.6 3E-07 6.5E-12 73.8 9.2 87 1-88 3-116 (188)
118 cd03135 GATase1_DJ-1 Type 1 gl 98.5 6E-07 1.3E-11 69.9 8.7 84 3-87 1-109 (163)
119 cd03131 GATase1_HTS Type 1 glu 98.5 3.5E-07 7.5E-12 73.0 7.0 53 35-90 60-117 (175)
120 cd03128 GAT_1 Type 1 glutamine 98.5 5.3E-07 1.1E-11 61.0 6.7 80 4-84 2-92 (92)
121 TIGR01383 not_thiJ DJ-1 family 98.5 7.2E-07 1.6E-11 70.8 8.3 85 2-87 1-112 (179)
122 PF04204 HTS: Homoserine O-suc 98.4 9.4E-07 2E-11 75.7 8.1 168 1-208 35-240 (298)
123 PRK11574 oxidative-stress-resi 98.4 2.7E-06 5.9E-11 68.7 10.4 85 1-86 3-114 (196)
124 cd03129 GAT1_Peptidase_E_like 98.4 3.7E-06 8.1E-11 68.8 10.2 107 2-109 31-159 (210)
125 cd03147 GATase1_Ydr533c_like T 98.3 2.1E-06 4.5E-11 71.6 8.0 51 36-87 93-143 (231)
126 cd03137 GATase1_AraC_1 AraC tr 98.3 2.1E-06 4.6E-11 68.6 7.8 83 3-87 1-112 (187)
127 cd03133 GATase1_ES1 Type 1 glu 98.3 3E-06 6.5E-11 69.8 8.6 76 14-89 21-143 (213)
128 cd03138 GATase1_AraC_2 AraC tr 98.3 4.8E-06 1E-10 67.1 9.4 53 35-87 67-120 (195)
129 cd03140 GATase1_PfpI_3 Type 1 98.3 1.9E-06 4.2E-11 68.1 6.6 82 3-87 1-107 (170)
130 PRK11249 katE hydroperoxidase 98.2 6.4E-06 1.4E-10 78.6 9.8 86 1-87 598-707 (752)
131 cd03136 GATase1_AraC_ArgR_like 98.2 5E-06 1.1E-10 66.4 7.4 82 3-87 1-111 (185)
132 PRK04155 chaperone protein Hch 98.2 1E-05 2.2E-10 69.5 9.0 52 35-87 145-196 (287)
133 cd03139 GATase1_PfpI_2 Type 1 98.2 5.5E-06 1.2E-10 65.9 6.8 83 3-87 1-110 (183)
134 cd03148 GATase1_EcHsp31_like T 98.1 1.2E-05 2.6E-10 67.1 7.7 51 36-87 95-145 (232)
135 TIGR01001 metA homoserine O-su 98.1 1.6E-05 3.4E-10 68.0 7.7 166 1-208 36-240 (300)
136 PF01965 DJ-1_PfpI: DJ-1/PfpI 98.0 5E-06 1.1E-10 64.2 2.9 51 36-87 36-87 (147)
137 PRK09393 ftrA transcriptional 97.9 3.9E-05 8.3E-10 66.7 8.1 83 2-87 11-122 (322)
138 cd03141 GATase1_Hsp31_like Typ 97.9 2.8E-05 6.1E-10 64.3 6.8 52 36-88 89-140 (221)
139 PF03575 Peptidase_S51: Peptid 97.8 3.7E-05 7.9E-10 60.0 5.9 95 14-109 4-113 (154)
140 COG4285 Uncharacterized conser 97.8 0.00062 1.3E-08 55.7 12.0 108 1-109 1-125 (253)
141 PF13278 DUF4066: Putative ami 97.7 5.7E-05 1.2E-09 59.3 5.1 52 34-87 58-109 (166)
142 KOG1907 Phosphoribosylformylgl 97.7 0.00043 9.4E-09 66.5 10.6 86 2-87 1060-1163(1320)
143 COG3340 PepE Peptidase E [Amin 97.6 0.00019 4E-09 58.7 6.0 74 15-89 54-136 (224)
144 KOG2764 Putative transcription 97.5 0.00051 1.1E-08 56.6 7.6 69 15-84 24-113 (247)
145 cd03145 GAT1_cyanophycinase Ty 97.2 0.0018 3.9E-08 53.4 7.6 86 2-88 31-134 (217)
146 TIGR02069 cyanophycinase cyano 97.2 0.0017 3.7E-08 54.8 7.6 105 2-107 30-162 (250)
147 COG4977 Transcriptional regula 97.1 0.002 4.4E-08 56.3 7.3 50 35-87 74-124 (328)
148 COG3155 ElbB Uncharacterized p 96.6 0.018 3.9E-07 45.2 8.4 55 36-90 84-147 (217)
149 PRK01911 ppnK inorganic polyph 95.1 0.13 2.9E-06 44.4 8.3 71 1-81 1-98 (292)
150 PF03698 UPF0180: Uncharacteri 94.4 0.11 2.4E-06 36.0 5.0 38 9-46 7-44 (80)
151 PRK03708 ppnK inorganic polyph 94.3 0.26 5.6E-06 42.2 8.2 70 1-81 1-90 (277)
152 PRK03094 hypothetical protein; 93.7 0.19 4.2E-06 34.8 5.0 38 9-46 7-44 (80)
153 PRK02649 ppnK inorganic polyph 93.3 0.51 1.1E-05 41.0 8.2 71 1-81 2-102 (305)
154 COG1897 MetA Homoserine trans- 93.0 0.15 3.3E-06 42.9 4.3 60 143-208 176-241 (307)
155 PRK14077 pnk inorganic polypho 92.1 0.9 2E-05 39.1 8.1 70 2-81 12-98 (287)
156 PRK04539 ppnK inorganic polyph 92.0 1.2 2.7E-05 38.4 8.9 70 2-81 7-102 (296)
157 PRK03378 ppnK inorganic polyph 91.8 1.1 2.4E-05 38.6 8.4 70 2-81 7-97 (292)
158 PRK03372 ppnK inorganic polyph 91.7 1.1 2.5E-05 38.9 8.3 70 2-81 7-106 (306)
159 PRK02155 ppnK NAD(+)/NADH kina 91.4 1.1 2.4E-05 38.6 8.0 70 2-81 7-97 (291)
160 COG4090 Uncharacterized protei 91.4 0.26 5.6E-06 37.3 3.5 44 31-79 79-124 (154)
161 cd03143 A4_beta-galactosidase_ 91.4 0.88 1.9E-05 34.9 6.7 56 14-76 30-85 (154)
162 PRK04885 ppnK inorganic polyph 91.2 1 2.2E-05 38.3 7.4 63 1-81 1-71 (265)
163 PRK14075 pnk inorganic polypho 90.7 1.4 3.1E-05 37.2 7.9 68 1-81 1-72 (256)
164 PF08532 Glyco_hydro_42M: Beta 90.6 0.63 1.4E-05 37.8 5.5 57 14-77 34-90 (207)
165 PF06283 ThuA: Trehalose utili 90.5 0.56 1.2E-05 38.3 5.1 62 15-81 24-91 (217)
166 COG4635 HemG Flavodoxin [Energ 90.3 1.5 3.3E-05 34.5 6.9 78 1-82 1-90 (175)
167 PRK14076 pnk inorganic polypho 90.2 1.5 3.3E-05 41.3 8.3 71 1-81 291-382 (569)
168 COG4242 CphB Cyanophycinase an 90.0 0.28 6.1E-06 41.2 2.9 93 16-108 73-187 (293)
169 PRK02645 ppnK inorganic polyph 88.2 3.5 7.5E-05 35.8 8.6 68 2-79 5-89 (305)
170 PRK11104 hemG protoporphyrinog 88.2 3.2 6.9E-05 33.0 7.7 74 1-81 1-88 (177)
171 PLN02929 NADH kinase 87.4 2.2 4.7E-05 37.1 6.7 56 14-80 38-96 (301)
172 COG0771 MurD UDP-N-acetylmuram 87.3 3.7 8.1E-05 37.6 8.5 30 1-30 8-37 (448)
173 PRK00561 ppnK inorganic polyph 85.9 3.3 7.1E-05 35.2 6.9 62 1-81 1-67 (259)
174 PRK01185 ppnK inorganic polyph 85.5 6.8 0.00015 33.5 8.7 65 1-80 1-82 (271)
175 PRK01231 ppnK inorganic polyph 85.1 5.7 0.00012 34.3 8.2 70 2-81 6-96 (295)
176 PRK09271 flavodoxin; Provision 83.2 10 0.00022 29.4 8.2 45 1-45 1-59 (160)
177 PRK06455 riboflavin synthase; 82.5 11 0.00023 29.6 7.9 76 1-77 2-97 (155)
178 PF09897 DUF2124: Uncharacteri 81.5 0.38 8.2E-06 37.1 -0.4 42 34-79 78-119 (147)
179 TIGR00200 cinA_nterm competenc 80.0 6.6 0.00014 35.6 6.9 47 1-47 1-69 (413)
180 PRK03501 ppnK inorganic polyph 79.7 9 0.0002 32.6 7.3 64 2-80 4-74 (264)
181 PRK00421 murC UDP-N-acetylmura 78.8 13 0.00029 33.8 8.6 78 1-79 8-114 (461)
182 PF00885 DMRL_synthase: 6,7-di 78.7 8.8 0.00019 29.6 6.3 76 2-78 5-107 (144)
183 PLN02404 6,7-dimethyl-8-ribity 78.4 18 0.00039 27.9 7.9 73 1-74 8-106 (141)
184 PRK02231 ppnK inorganic polyph 77.8 7.2 0.00016 33.4 6.1 57 14-80 4-75 (272)
185 TIGR00114 lumazine-synth 6,7-d 77.6 21 0.00045 27.4 8.0 73 1-74 1-99 (138)
186 COG2910 Putative NADH-flavin r 76.7 17 0.00038 29.5 7.6 81 1-84 1-109 (211)
187 PF09822 ABC_transp_aux: ABC-t 76.7 17 0.00037 30.5 8.2 58 11-75 170-229 (271)
188 COG1058 CinA Predicted nucleot 76.5 14 0.00031 31.3 7.4 48 1-48 2-71 (255)
189 cd05014 SIS_Kpsf KpsF-like pro 76.3 22 0.00048 25.8 7.8 72 2-80 2-83 (128)
190 PRK03673 hypothetical protein; 75.5 8.9 0.00019 34.6 6.4 47 1-47 2-70 (396)
191 PRK00549 competence damage-ind 75.2 9.6 0.00021 34.5 6.5 47 1-47 1-69 (414)
192 PRK12419 riboflavin synthase s 74.1 28 0.0006 27.4 8.0 73 2-75 12-110 (158)
193 TIGR00177 molyb_syn molybdenum 73.7 11 0.00024 28.7 5.7 35 14-48 31-77 (144)
194 PF09198 T4-Gluco-transf: Bact 73.6 6.6 0.00014 22.5 3.2 26 1-26 1-37 (38)
195 PLN02935 Bifunctional NADH kin 73.2 16 0.00036 34.0 7.5 70 2-81 196-296 (508)
196 cd00885 cinA Competence-damage 72.3 17 0.00036 28.7 6.6 70 13-89 22-103 (170)
197 COG0054 RibH Riboflavin syntha 71.2 25 0.00054 27.4 7.0 73 2-75 14-112 (152)
198 PRK06703 flavodoxin; Provision 70.8 17 0.00037 27.6 6.2 44 1-44 2-55 (151)
199 PRK03767 NAD(P)H:quinone oxido 70.3 11 0.00023 30.4 5.2 31 1-31 2-39 (200)
200 cd03142 GATase1_ThuA Type 1 gl 70.0 16 0.00035 30.1 6.2 63 14-81 27-98 (215)
201 PRK01215 competence damage-ind 69.9 22 0.00048 30.2 7.2 47 2-48 5-73 (264)
202 PRK03670 competence damage-ind 69.8 18 0.00038 30.6 6.5 47 1-47 1-70 (252)
203 TIGR02667 moaB_proteo molybden 69.1 27 0.00058 27.3 7.0 47 2-48 6-74 (163)
204 PRK06756 flavodoxin; Provision 68.3 17 0.00038 27.4 5.8 45 1-45 2-57 (148)
205 PF00056 Ldh_1_N: lactate/mala 68.2 24 0.00052 26.7 6.5 47 1-47 1-79 (141)
206 cd00886 MogA_MoaB MogA_MoaB fa 67.9 22 0.00047 27.3 6.3 47 2-48 2-72 (152)
207 PRK00061 ribH 6,7-dimethyl-8-r 67.7 43 0.00094 26.1 7.9 73 2-75 14-112 (154)
208 TIGR00147 lipid kinase, YegS/R 66.6 49 0.0011 28.0 8.8 49 2-50 3-70 (293)
209 PRK10446 ribosomal protein S6 65.9 13 0.00028 31.8 5.1 31 1-31 1-34 (300)
210 PLN02727 NAD kinase 65.5 20 0.00044 35.8 6.7 70 2-81 680-777 (986)
211 PRK04761 ppnK inorganic polyph 65.5 8.2 0.00018 32.5 3.6 38 34-81 22-59 (246)
212 PRK01390 murD UDP-N-acetylmura 65.5 28 0.00061 31.6 7.4 30 2-31 11-40 (460)
213 PRK03815 murD UDP-N-acetylmura 64.8 51 0.0011 29.7 8.9 30 1-31 1-30 (401)
214 PRK04690 murD UDP-N-acetylmura 64.3 44 0.00096 30.6 8.5 29 2-30 10-38 (468)
215 TIGR01754 flav_RNR ribonucleot 64.2 51 0.0011 24.6 7.6 46 1-46 1-59 (140)
216 PRK06242 flavodoxin; Provision 64.0 42 0.00092 25.1 7.2 46 1-46 1-52 (150)
217 PF01220 DHquinase_II: Dehydro 63.3 8.9 0.00019 29.5 3.1 33 16-48 35-78 (140)
218 PRK01710 murD UDP-N-acetylmura 63.2 30 0.00065 31.5 7.2 29 2-30 16-44 (458)
219 KOG4180 Predicted kinase [Gene 62.0 16 0.00035 32.1 4.8 54 14-77 79-135 (395)
220 TIGR02336 1,3-beta-galactosyl- 61.8 30 0.00066 33.4 6.9 62 16-79 474-544 (719)
221 cd00758 MoCF_BD MoCF_BD: molyb 61.5 22 0.00047 26.6 5.1 35 14-48 23-69 (133)
222 PRK13015 3-dehydroquinate dehy 61.2 47 0.001 25.7 6.8 38 11-48 27-79 (146)
223 TIGR01755 flav_wrbA NAD(P)H:qu 60.7 21 0.00046 28.7 5.2 30 1-30 1-37 (197)
224 COG0061 nadF NAD kinase [Coenz 60.7 46 0.001 28.4 7.5 70 1-80 1-88 (281)
225 PF02601 Exonuc_VII_L: Exonucl 59.2 49 0.0011 28.5 7.5 71 1-75 15-111 (319)
226 PRK09417 mogA molybdenum cofac 59.0 50 0.0011 26.7 7.0 48 1-48 4-77 (193)
227 PRK04308 murD UDP-N-acetylmura 58.6 52 0.0011 29.7 7.9 29 2-30 7-35 (445)
228 PRK05569 flavodoxin; Provision 58.6 26 0.00055 26.1 5.0 44 2-45 3-56 (141)
229 PRK03369 murD UDP-N-acetylmura 58.4 43 0.00093 30.9 7.4 29 2-30 14-42 (488)
230 PF13689 DUF4154: Domain of un 58.4 63 0.0014 24.5 7.2 69 2-82 29-102 (145)
231 COG0303 MoeA Molybdopterin bio 57.9 58 0.0013 29.5 7.9 36 14-49 207-254 (404)
232 COG5426 Uncharacterized membra 57.4 24 0.00051 28.9 4.7 65 14-78 36-117 (254)
233 cd06318 PBP1_ABC_sugar_binding 56.6 40 0.00087 27.6 6.4 33 14-46 20-64 (282)
234 TIGR01082 murC UDP-N-acetylmur 56.5 39 0.00085 30.6 6.7 76 3-79 2-106 (448)
235 PRK00141 murD UDP-N-acetylmura 56.5 45 0.00098 30.6 7.2 29 2-30 17-45 (473)
236 PRK06444 prephenate dehydrogen 54.6 35 0.00075 27.7 5.4 38 1-45 1-39 (197)
237 PRK05395 3-dehydroquinate dehy 54.3 50 0.0011 25.6 5.9 37 12-48 28-79 (146)
238 PRK00683 murD UDP-N-acetylmura 52.6 83 0.0018 28.2 8.1 29 2-30 5-33 (418)
239 PRK05568 flavodoxin; Provision 50.5 43 0.00094 24.8 5.1 45 2-46 3-57 (142)
240 PRK01368 murD UDP-N-acetylmura 50.2 72 0.0016 29.2 7.4 29 2-31 8-36 (454)
241 PF09508 Lact_bio_phlase: Lact 49.5 42 0.0009 32.3 5.7 63 14-78 469-540 (716)
242 TIGR03127 RuMP_HxlB 6-phospho 48.9 1.2E+02 0.0027 23.4 8.5 71 2-79 32-107 (179)
243 PF09075 STb_secrete: Heat-sta 48.4 4.9 0.00011 23.9 -0.3 14 74-87 32-45 (48)
244 TIGR03521 GldG gliding-associa 47.8 99 0.0021 29.1 8.0 68 2-76 185-267 (552)
245 PF10727 Rossmann-like: Rossma 47.7 35 0.00076 25.6 4.1 29 1-30 11-40 (127)
246 smart00870 Asparaginase Aspara 47.3 78 0.0017 27.6 6.9 35 37-77 235-270 (323)
247 TIGR01819 F420_cofD LPPG:FO 2- 47.1 15 0.00033 31.8 2.4 39 35-79 180-220 (297)
248 smart00852 MoCF_biosynth Proba 47.0 39 0.00084 25.1 4.3 37 12-48 20-68 (135)
249 cd06309 PBP1_YtfQ_like Peripla 46.8 1.1E+02 0.0024 24.8 7.6 33 14-46 20-64 (273)
250 cd06305 PBP1_methylthioribose_ 45.3 1.3E+02 0.0028 24.3 7.7 33 14-46 20-64 (273)
251 KOG1467 Translation initiation 44.9 46 0.00099 30.9 5.0 79 1-83 386-473 (556)
252 COG0391 Uncharacterized conser 44.5 18 0.0004 31.7 2.4 41 35-79 187-229 (323)
253 cd06320 PBP1_allose_binding Pe 44.5 1.7E+02 0.0036 23.8 8.3 67 2-77 1-88 (275)
254 cd06300 PBP1_ABC_sugar_binding 44.4 1.6E+02 0.0035 23.8 8.1 67 2-77 1-91 (272)
255 PRK09189 uroporphyrinogen-III 44.3 72 0.0016 26.1 6.0 45 1-45 1-56 (240)
256 COG1184 GCD2 Translation initi 44.2 67 0.0015 28.0 5.8 67 13-83 160-233 (301)
257 PF12641 Flavodoxin_3: Flavodo 43.9 1.4E+02 0.003 23.3 7.1 68 7-80 6-78 (160)
258 TIGR02990 ectoine_eutA ectoine 43.8 1.7E+02 0.0036 24.5 8.0 28 2-29 122-151 (239)
259 TIGR01506 ribC_arch riboflavin 42.9 1E+02 0.0022 24.0 6.1 59 15-76 18-94 (151)
260 PF10087 DUF2325: Uncharacteri 42.1 1.2E+02 0.0025 21.2 7.4 70 11-88 11-93 (97)
261 cd06310 PBP1_ABC_sugar_binding 42.0 1.2E+02 0.0026 24.6 7.0 45 2-46 1-66 (273)
262 PRK14690 molybdopterin biosynt 41.8 74 0.0016 28.9 6.0 35 14-48 224-270 (419)
263 TIGR01087 murD UDP-N-acetylmur 41.1 1.4E+02 0.003 26.8 7.7 29 2-30 1-29 (433)
264 TIGR00237 xseA exodeoxyribonuc 40.9 1.6E+02 0.0034 26.9 8.0 71 1-75 130-223 (432)
265 PRK07308 flavodoxin; Validated 39.8 42 0.00092 25.2 3.6 42 2-43 3-54 (146)
266 cd05005 SIS_PHI Hexulose-6-pho 39.4 1.8E+02 0.0039 22.5 9.0 69 2-79 35-110 (179)
267 COG1597 LCB5 Sphingosine kinas 39.2 2.2E+02 0.0047 24.6 8.3 36 14-49 24-70 (301)
268 PRK14573 bifunctional D-alanyl 39.1 1.6E+02 0.0036 29.0 8.4 87 2-89 6-127 (809)
269 PRK10333 5-formyltetrahydrofol 38.8 17 0.00037 28.9 1.3 49 37-85 109-159 (182)
270 PRK02006 murD UDP-N-acetylmura 38.7 1.1E+02 0.0024 28.1 6.8 29 2-30 9-37 (498)
271 PRK01372 ddl D-alanine--D-alan 38.0 69 0.0015 27.1 5.0 32 13-44 26-63 (304)
272 PRK05928 hemD uroporphyrinogen 38.0 64 0.0014 26.0 4.7 47 1-47 2-62 (249)
273 PRK14571 D-alanyl-alanine synt 38.0 1.1E+02 0.0023 26.0 6.2 42 1-43 1-59 (299)
274 PF12724 Flavodoxin_5: Flavodo 37.9 60 0.0013 24.4 4.2 31 16-46 19-52 (143)
275 PRK10342 glycerate kinase I; P 37.3 41 0.00089 30.3 3.6 43 33-81 280-326 (381)
276 PRK13055 putative lipid kinase 36.9 2.4E+02 0.0052 24.5 8.4 48 2-49 4-71 (334)
277 TIGR00045 glycerate kinase. Th 36.8 46 0.00099 29.9 3.8 43 33-81 279-325 (375)
278 cd00887 MoeA MoeA family. Memb 36.7 94 0.002 27.9 5.9 35 14-48 199-245 (394)
279 PF08937 DUF1863: MTH538 TIR-l 36.6 47 0.001 24.6 3.3 41 36-82 69-110 (130)
280 COG3395 Uncharacterized protei 36.3 2E+02 0.0043 26.3 7.7 44 1-45 1-49 (413)
281 cd06267 PBP1_LacI_sugar_bindin 35.3 2.1E+02 0.0045 22.6 7.3 53 14-77 20-84 (264)
282 PF13407 Peripla_BP_4: Peripla 35.2 2.3E+02 0.0051 22.6 8.0 57 15-80 20-89 (257)
283 TIGR02727 MTHFS_bact 5,10-meth 35.1 25 0.00054 27.8 1.7 50 37-86 115-165 (181)
284 cd07186 CofD_like LPPG:FO 2-ph 34.9 33 0.00071 29.9 2.5 39 35-78 181-222 (303)
285 PF04016 DUF364: Domain of unk 34.4 30 0.00066 26.5 2.0 74 2-88 13-105 (147)
286 PF01606 Arteri_env: Arterivir 34.3 7.5 0.00016 30.9 -1.4 12 195-206 118-129 (214)
287 PRK11914 diacylglycerol kinase 34.3 2.5E+02 0.0055 23.8 8.0 50 1-50 9-77 (306)
288 cd02067 B12-binding B12 bindin 34.0 1.8E+02 0.0038 20.8 6.2 62 2-66 1-76 (119)
289 PRK09932 glycerate kinase II; 33.8 53 0.0011 29.6 3.7 43 33-81 280-326 (381)
290 cd00411 Asparaginase Asparagin 33.3 1.7E+02 0.0036 25.5 6.7 39 37-81 233-274 (323)
291 PRK10355 xylF D-xylose transpo 33.3 3.1E+02 0.0068 23.5 8.9 67 2-77 27-112 (330)
292 PRK07116 flavodoxin; Provision 33.2 2E+02 0.0044 21.9 6.6 26 1-26 3-31 (160)
293 cd06316 PBP1_ABC_sugar_binding 33.2 2.8E+02 0.006 22.9 8.4 67 2-77 1-87 (294)
294 PF14403 CP_ATPgrasp_2: Circul 32.9 2E+02 0.0043 26.5 7.3 84 2-86 187-282 (445)
295 cd06292 PBP1_LacI_like_10 Liga 32.9 2.5E+02 0.0054 22.6 7.5 58 14-77 20-89 (273)
296 PRK03806 murD UDP-N-acetylmura 32.9 2.6E+02 0.0056 25.1 8.2 29 2-30 8-36 (438)
297 PRK00286 xseA exodeoxyribonucl 32.5 2.5E+02 0.0054 25.4 8.0 71 2-75 137-228 (438)
298 PF01975 SurE: Survival protei 32.3 50 0.0011 26.7 3.0 31 1-31 1-35 (196)
299 cd02071 MM_CoA_mut_B12_BD meth 32.2 2E+02 0.0043 20.9 6.8 53 2-54 1-67 (122)
300 PRK13606 LPPG:FO 2-phospho-L-l 32.2 33 0.00072 29.8 2.1 38 35-78 183-222 (303)
301 cd06282 PBP1_GntR_like_2 Ligan 32.0 2.6E+02 0.0057 22.2 7.5 33 14-46 20-64 (266)
302 cd06299 PBP1_LacI_like_13 Liga 31.7 2.4E+02 0.0053 22.5 7.2 33 14-46 20-64 (265)
303 TIGR02153 gatD_arch glutamyl-t 31.7 1.9E+02 0.004 26.3 6.9 35 37-77 299-334 (404)
304 TIGR00520 asnASE_II L-asparagi 31.5 1.9E+02 0.0041 25.6 6.8 35 37-77 262-297 (349)
305 PRK14619 NAD(P)H-dependent gly 31.3 75 0.0016 27.2 4.2 44 1-45 5-55 (308)
306 TIGR01125 MiaB-like tRNA modif 31.3 2.4E+02 0.0052 25.5 7.6 77 2-88 1-83 (430)
307 COG0252 AnsB L-asparaginase/ar 31.3 1.4E+02 0.003 26.6 5.8 36 36-77 253-289 (351)
308 cd06273 PBP1_GntR_like_1 This 31.0 2.7E+02 0.0057 22.3 7.4 33 14-46 20-64 (268)
309 PF01513 NAD_kinase: ATP-NAD k 31.0 27 0.00058 29.8 1.3 70 2-81 1-110 (285)
310 PRK10680 molybdopterin biosynt 31.0 1.1E+02 0.0025 27.6 5.4 34 15-48 209-254 (411)
311 PRK04183 glutamyl-tRNA(Gln) am 30.6 1.9E+02 0.0042 26.3 6.8 35 37-77 312-347 (419)
312 cd01538 PBP1_ABC_xylose_bindin 30.6 3E+02 0.0065 22.7 7.7 55 14-77 20-86 (288)
313 PRK10569 NAD(P)H-dependent FMN 30.5 1.4E+02 0.003 23.8 5.4 78 1-80 1-108 (191)
314 PRK04663 murD UDP-N-acetylmura 30.4 2E+02 0.0042 26.0 6.9 29 2-30 9-39 (438)
315 cd03522 MoeA_like MoeA_like. T 30.4 1.7E+02 0.0036 25.6 6.2 47 2-48 161-230 (312)
316 PRK06851 hypothetical protein; 30.3 1E+02 0.0022 27.7 4.8 32 14-45 233-264 (367)
317 PF02310 B12-binding: B12 bind 29.8 1.2E+02 0.0026 21.5 4.6 47 2-48 2-62 (121)
318 PRK12359 flavodoxin FldB; Prov 29.6 1.3E+02 0.0028 23.8 4.9 45 1-45 1-53 (172)
319 TIGR00640 acid_CoA_mut_C methy 29.4 2.4E+02 0.0053 21.1 6.5 53 2-54 4-70 (132)
320 PRK03803 murD UDP-N-acetylmura 29.4 3E+02 0.0065 24.8 8.0 29 2-30 8-36 (448)
321 PRK13337 putative lipid kinase 29.3 3.6E+02 0.0077 22.9 8.2 49 2-50 3-70 (304)
322 PRK13302 putative L-aspartate 29.3 3.5E+02 0.0076 22.8 7.9 69 1-80 7-100 (271)
323 cd01541 PBP1_AraR Ligand-bindi 28.8 2.7E+02 0.006 22.4 7.1 58 14-77 20-89 (273)
324 PF01812 5-FTHF_cyc-lig: 5-for 28.7 21 0.00046 28.1 0.3 49 37-85 117-169 (186)
325 PRK13054 lipid kinase; Reviewe 28.3 2.8E+02 0.006 23.6 7.2 48 2-49 5-68 (300)
326 PRK11096 ansB L-asparaginase I 27.9 2.5E+02 0.0054 24.9 6.9 35 37-77 256-291 (347)
327 TIGR00393 kpsF KpsF/GutQ famil 27.7 3.4E+02 0.0074 22.3 7.5 70 2-80 2-83 (268)
328 COG2185 Sbm Methylmalonyl-CoA 27.7 1.2E+02 0.0026 23.4 4.3 31 15-45 32-71 (143)
329 TIGR02634 xylF D-xylose ABC tr 27.6 2.5E+02 0.0054 23.5 6.8 33 14-46 19-63 (302)
330 PF00289 CPSase_L_chain: Carba 27.6 41 0.00088 24.5 1.6 43 2-45 4-52 (110)
331 COG1031 Uncharacterized Fe-S o 27.6 1.2E+02 0.0026 28.3 4.8 47 1-47 1-72 (560)
332 PRK02261 methylaspartate mutas 27.3 2.7E+02 0.0059 20.9 7.1 53 2-54 5-71 (137)
333 TIGR01826 CofD_related conserv 27.2 45 0.00098 29.1 2.1 43 35-81 170-214 (310)
334 cd01575 PBP1_GntR Ligand-bindi 27.1 3.2E+02 0.007 21.7 7.8 34 14-47 20-65 (268)
335 PRK14491 putative bifunctional 27.0 1.2E+02 0.0027 28.9 5.1 35 14-48 398-444 (597)
336 PRK09461 ansA cytoplasmic aspa 27.0 2.5E+02 0.0055 24.6 6.8 37 37-77 233-270 (335)
337 PRK08811 uroporphyrinogen-III 26.8 1E+02 0.0023 26.0 4.2 44 1-44 19-76 (266)
338 COG3199 Predicted inorganic po 26.6 73 0.0016 28.3 3.3 38 37-85 100-137 (355)
339 COG0616 SppA Periplasmic serin 26.6 2.1E+02 0.0046 24.8 6.2 45 37-88 97-150 (317)
340 TIGR00706 SppA_dom signal pept 26.5 1.6E+02 0.0034 23.7 5.1 62 2-80 1-70 (207)
341 PF07090 DUF1355: Protein of u 26.1 1.2E+02 0.0025 24.2 4.1 69 12-82 29-111 (177)
342 PRK05752 uroporphyrinogen-III 26.1 1.1E+02 0.0024 25.3 4.2 44 1-44 4-62 (255)
343 cd06319 PBP1_ABC_sugar_binding 26.1 3.5E+02 0.0075 21.8 7.8 32 15-46 21-64 (277)
344 COG0420 SbcD DNA repair exonuc 25.8 60 0.0013 28.8 2.7 43 37-79 40-83 (390)
345 PRK10017 colanic acid biosynth 25.7 3.6E+02 0.0077 24.6 7.7 29 1-29 1-39 (426)
346 PRK09004 FMN-binding protein M 25.6 1.4E+02 0.0031 22.6 4.5 43 1-43 2-52 (146)
347 PRK06975 bifunctional uroporph 25.5 1.1E+02 0.0024 29.5 4.6 46 1-46 4-64 (656)
348 cd06323 PBP1_ribose_binding Pe 25.5 3.2E+02 0.0068 21.8 6.8 55 14-77 20-86 (268)
349 cd06317 PBP1_ABC_sugar_binding 25.4 3.5E+02 0.0077 21.6 7.4 54 15-77 22-87 (275)
350 cd06324 PBP1_ABC_sugar_binding 25.3 3.2E+02 0.007 22.8 7.1 32 15-46 22-67 (305)
351 PF04007 DUF354: Protein of un 25.2 4.7E+02 0.01 23.0 8.8 101 1-105 1-113 (335)
352 PRK09267 flavodoxin FldA; Vali 25.2 1.1E+02 0.0024 23.5 3.8 46 1-46 2-55 (169)
353 PRK10949 protease 4; Provision 25.2 1.5E+02 0.0032 28.5 5.3 37 36-78 363-403 (618)
354 PTZ00393 protein tyrosine phos 25.1 4.2E+02 0.009 22.3 7.8 76 1-79 92-178 (241)
355 PRK02705 murD UDP-N-acetylmura 25.1 3.4E+02 0.0073 24.4 7.5 29 2-30 2-30 (459)
356 PF09370 TIM-br_sig_trns: TIM- 25.0 59 0.0013 27.8 2.3 31 60-90 3-33 (268)
357 TIGR02853 spore_dpaA dipicolin 24.9 1.7E+02 0.0037 25.0 5.2 38 8-45 7-62 (287)
358 cd07044 CofD_YvcK Family of Co 24.8 55 0.0012 28.5 2.2 43 35-81 172-216 (309)
359 PRK14498 putative molybdopteri 24.3 1.6E+02 0.0035 28.1 5.5 35 14-48 217-263 (633)
360 cd01544 PBP1_GalR Ligand-bindi 24.3 3.8E+02 0.0083 21.6 7.7 32 14-45 25-60 (270)
361 COG2984 ABC-type uncharacteriz 24.2 5E+02 0.011 22.9 8.0 70 2-78 161-246 (322)
362 PRK11557 putative DNA-binding 24.2 4.2E+02 0.0091 22.0 7.7 72 2-80 130-211 (278)
363 PRK10329 glutaredoxin-like pro 23.9 2.3E+02 0.0051 19.0 5.0 32 1-32 1-34 (81)
364 COG1570 XseA Exonuclease VII, 23.9 5.8E+02 0.013 23.5 8.6 72 2-75 137-229 (440)
365 PF14359 DUF4406: Domain of un 23.7 1.6E+02 0.0035 20.6 4.1 35 12-46 18-68 (92)
366 TIGR01088 aroQ 3-dehydroquinat 23.6 2.8E+02 0.006 21.4 5.5 38 11-48 25-77 (141)
367 cd06289 PBP1_MalI_like Ligand- 23.4 3.8E+02 0.0083 21.3 7.4 32 15-46 21-64 (268)
368 TIGR00284 dihydropteroate synt 23.2 1.8E+02 0.0039 27.2 5.3 45 1-45 1-68 (499)
369 PRK11543 gutQ D-arabinose 5-ph 23.2 4.1E+02 0.0089 22.6 7.4 77 2-87 44-133 (321)
370 PLN02522 ATP citrate (pro-S)-l 23.1 2.7E+02 0.0058 26.8 6.5 74 2-83 169-262 (608)
371 COG1587 HemD Uroporphyrinogen- 23.1 1.6E+02 0.0035 24.3 4.7 82 1-89 2-97 (248)
372 PRK14497 putative molybdopteri 22.9 1.9E+02 0.0042 27.4 5.5 34 15-48 211-256 (546)
373 COG0745 OmpR Response regulato 22.9 3.5E+02 0.0077 22.2 6.6 73 1-80 1-81 (229)
374 cd06313 PBP1_ABC_sugar_binding 22.8 4.2E+02 0.0091 21.5 7.6 31 15-45 21-63 (272)
375 TIGR00519 asnASE_I L-asparagin 22.7 3.2E+02 0.007 23.9 6.7 35 37-77 235-270 (336)
376 TIGR00768 rimK_fam alpha-L-glu 22.7 1.6E+02 0.0035 24.1 4.6 44 2-45 1-56 (277)
377 TIGR01753 flav_short flavodoxi 22.0 1.4E+02 0.003 21.7 3.7 31 15-45 19-53 (140)
378 cd06312 PBP1_ABC_sugar_binding 21.9 4.3E+02 0.0093 21.3 7.5 55 15-78 22-89 (271)
379 PRK15029 arginine decarboxylas 21.8 1.5E+02 0.0032 29.3 4.7 43 1-43 1-59 (755)
380 cd06281 PBP1_LacI_like_5 Ligan 21.7 4.3E+02 0.0093 21.2 7.7 33 14-46 20-64 (269)
381 cd02070 corrinoid_protein_B12- 21.7 4E+02 0.0087 21.2 6.6 62 2-66 84-159 (201)
382 PRK11337 DNA-binding transcrip 21.7 4.4E+02 0.0095 22.1 7.2 69 2-79 142-222 (292)
383 cd01539 PBP1_GGBP Periplasmic 21.2 4.9E+02 0.011 21.7 8.5 67 2-77 1-88 (303)
384 PRK06851 hypothetical protein; 21.0 1.7E+02 0.0037 26.2 4.5 32 14-45 49-80 (367)
385 smart00642 Aamy Alpha-amylase 20.8 1.9E+02 0.0042 22.4 4.4 23 10-32 16-41 (166)
386 PRK13059 putative lipid kinase 20.6 5.3E+02 0.011 21.8 8.4 49 2-50 3-69 (295)
387 PF12558 DUF3744: ATP-binding 20.5 52 0.0011 22.1 1.0 22 15-36 15-36 (74)
388 PRK13304 L-aspartate dehydroge 20.4 5E+02 0.011 21.7 7.2 26 1-27 2-30 (265)
389 PRK15482 transcriptional regul 20.4 5.1E+02 0.011 21.6 7.9 70 2-80 137-218 (285)
390 TIGR02370 pyl_corrinoid methyl 20.2 4.5E+02 0.0098 20.9 8.2 53 2-54 86-152 (197)
391 PRK00066 ldh L-lactate dehydro 20.1 4.7E+02 0.01 22.6 7.1 14 34-47 70-83 (315)
No 1
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-49 Score=315.47 Aligned_cols=188 Identities=28% Similarity=0.422 Sum_probs=165.2
Q ss_pred CEEEEEec-CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcC-C-CcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-G-ESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 1 m~v~il~~-~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~G-G-~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
|+|+|+++ .||+.|+.++|+++|++++++++++++.++|.||+|| | +.+.|+.|.. .++.+.|+++++.++|+|||
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~~AD~liLPGVGaf~~am~~L~~-~gl~~~i~~~~~~~kP~LGI 80 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEILKADKLILPGVGAFGAAMANLRE-RGLIEAIKEAVESGKPFLGI 80 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHhhCCEEEecCCCCHHHHHHHHHh-cchHHHHHHHHhcCCCEEEE
Confidence 59999998 6799999999999999999999999999999999999 6 6788999987 59999999999999999999
Q ss_pred ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeE
Q 028010 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD 155 (215)
Q Consensus 78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~ 155 (215)
|+|||||.+.+.+. +..++||+++++|.|.+. ..+++||||||++... ..+|+|+++++ +||
T Consensus 81 ClGMQlLfe~SeE~--~~~~GLg~i~G~V~r~~~--------~~~kvPHMGWN~l~~~------~~~~l~~gi~~~~~~Y 144 (204)
T COG0118 81 CLGMQLLFERSEEG--GGVKGLGLIPGKVVRFPA--------EDLKVPHMGWNQVEFV------RGHPLFKGIPDGAYFY 144 (204)
T ss_pred eHhHHhhhhccccc--CCCCCcceecceEEEcCC--------CCCCCCccccceeecc------CCChhhcCCCCCCEEE
Confidence 99999999998763 244899999999999641 2268999999998752 37899999965 899
Q ss_pred EEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCccc
Q 028010 156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWY 212 (215)
Q Consensus 156 ~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~ 212 (215)
|+|||++.+..++ .++++++|+ ..|.+++.++|++|+|||||||++.|+-
T Consensus 145 FVHSY~~~~~~~~--~v~~~~~YG-----~~f~AaV~k~N~~g~QFHPEKSg~~Gl~ 194 (204)
T COG0118 145 FVHSYYVPPGNPE--TVVATTDYG-----EPFPAAVAKDNVFGTQFHPEKSGKAGLK 194 (204)
T ss_pred EEEEEeecCCCCc--eEEEeccCC-----CeeEEEEEeCCEEEEecCcccchHHHHH
Confidence 9999998864443 588999998 5799999999999999999999998863
No 2
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=100.00 E-value=5.9e-48 Score=321.31 Aligned_cols=209 Identities=78% Similarity=1.233 Sum_probs=184.5
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G 80 (215)
|||+||+++|++.++.++|+++|++++++++++++.++|+||||||+++.+..+....++.+.|++++++|+|+||||+|
T Consensus 2 m~igVLa~qG~~~e~~~aL~~lG~ev~~v~~~~~L~~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~G 81 (248)
T PLN02832 2 MAIGVLALQGSFNEHIAALRRLGVEAVEVRKPEQLEGVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAG 81 (248)
T ss_pred cEEEEEeCCCchHHHHHHHHHCCCcEEEeCCHHHhccCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChh
Confidence 69999999999999999999999999999999999999999999999988888876557899999999999999999999
Q ss_pred HHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeEEEEEe
Q 028010 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160 (215)
Q Consensus 81 ~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~ 160 (215)
||+|++.+.+...++.+.+|.+|.+|.||.+|+|+.||+..+++|++|||++.+..+.++|++.|.+....+++|++|||
T Consensus 82 mqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sfe~~l~ip~~gwn~~~~~~~~~vFirap~i~~~~~~v~~l~sy 161 (248)
T PLN02832 82 LIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFETELPVPELAASEGGPETFRAVFIRAPAILSVGPGVEVLAEY 161 (248)
T ss_pred HHHHHHHhcccccCCcceeCCccceEEecccCceeEeEEcCCcCCccccccccccccceEEecCCceEeCCCcEEEEEEe
Confidence 99999998542112356799999999999999999999988899999999886445788899999887778899999999
Q ss_pred eCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010 161 PVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215 (215)
Q Consensus 161 ~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~ 215 (215)
.......+ ..+|+++|+ ...+++++++||++|+|||||+|++.++|+||
T Consensus 162 ~~~~~~~~--~~~a~~~y~----~~~~~~aV~qgnvlatqFHPEls~d~rih~~F 210 (248)
T PLN02832 162 PLPSEKAL--YSSSTDAEG----RDKVIVAVKQGNLLATAFHPELTADTRWHSYF 210 (248)
T ss_pred cccccccc--ccccccccc----CCceEEEEEeCCEEEEEccCccCCccHHHHHH
Confidence 86544332 578899997 23689999999999999999999999999997
No 3
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=4.7e-40 Score=265.14 Aligned_cols=176 Identities=20% Similarity=0.325 Sum_probs=146.9
Q ss_pred EEEEEecC-CChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCC-C-cchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (215)
Q Consensus 2 ~v~il~~~-G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG-~-~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC 78 (215)
.|+|+++. ||+.++.++|+++|++++++++++++.++|+||+||+ . .+.+..+.+ .++.+.|++ +.++|+||||
T Consensus 1 mi~iidyg~gN~~s~~~al~~~g~~~~~v~~~~~l~~~D~lIlPG~g~~~~~~~~L~~-~gl~~~i~~--~~g~PvlGIC 77 (192)
T PRK13142 1 MIVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILPGVGHFKDAMSEIKR-LNLNAILAK--NTDKKMIGIC 77 (192)
T ss_pred CEEEEEcCCccHHHHHHHHHHcCCCEEEEeCHHHhccCCEEEECCCCCHHHHHHHHHH-CCcHHHHHH--hCCCeEEEEC
Confidence 18999984 5999999999999999999999999999999999996 3 456777765 678899988 5799999999
Q ss_pred hHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeEEEE
Q 028010 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA 158 (215)
Q Consensus 79 ~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~H 158 (215)
+|||+|++.+.+ +..++||++|++|.|. +..+++|+||||.+.. ..++++ .++||+|
T Consensus 78 lGmQlL~~~~~e---g~~~GLgll~~~V~rf---------~~~~~vph~GWn~~~~--------~~~l~~---~~~yFVh 134 (192)
T PRK13142 78 LGMQLMYEHSDE---GDASGLGFIPGNISRI---------QTEYPVPHLGWNNLVS--------KHPMLN---QDVYFVH 134 (192)
T ss_pred HHHHHHhhhccc---CCcCccCceeEEEEEC---------CCCCCCCcccccccCC--------CCcccc---cEEEEEC
Confidence 999999999854 3578999999999994 3346799999998752 345554 5799999
Q ss_pred EeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCccc
Q 028010 159 DYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWY 212 (215)
Q Consensus 159 s~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~ 212 (215)
||++. . .. .++++++|+ ..+.++++++|++|+|||||+|++.|+.
T Consensus 135 Sy~v~-~-~~--~v~~~~~yg-----~~~~~~v~~~n~~g~QFHPEkS~~~G~~ 179 (192)
T PRK13142 135 SYQAP-M-SE--NVIAYAQYG-----ADIPAIVQFNNYIGIQFHPEKSGTYGLQ 179 (192)
T ss_pred CCeEC-C-CC--CEEEEEECC-----CeEEEEEEcCCEEEEecCcccCcHhHHH
Confidence 99883 2 22 578999997 4688999999999999999999998875
No 4
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=9.5e-39 Score=250.42 Aligned_cols=185 Identities=52% Similarity=0.842 Sum_probs=161.7
Q ss_pred CEEEEEecCCChHHHHHHHHHCC-CeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010 1 MVVGVLALQGSFNEHIAALKRLG-VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G-~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~ 79 (215)
|||+||++||++.++.+++++++ +++..++.+++++.+|+||||||.++++..|....++.+.|++++++|+|++|.|+
T Consensus 1 m~IGVLalQG~v~EH~~~l~~~~~~e~~~Vk~~~dL~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCA 80 (194)
T COG0311 1 MKIGVLALQGAVEEHLEALEKAGGAEVVEVKRPEDLEGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCA 80 (194)
T ss_pred CeEEEEEecccHHHHHHHHHhhcCCceEEEcCHHHhccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEech
Confidence 89999999999999999999995 99999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeEEEEE
Q 028010 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLAD 159 (215)
Q Consensus 80 G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs 159 (215)
|+.+||+...++ ...+.||++|.+|.||+||||+.||+.+..+...+- +-+++++|++.|.+..+.+.+.++.+
T Consensus 81 GlIlLakei~~~--~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~~----~~~~~avFIRAP~I~~vg~~V~vLa~ 154 (194)
T COG0311 81 GLILLAKEILDG--PEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFGL----PFPFPAVFIRAPVIEEVGDGVEVLAT 154 (194)
T ss_pred hhhhhhhhhcCC--CCCcccceEEEEEEccccccccccceeeEEeecccC----CCcceEEEEEcceeehhcCcceEeee
Confidence 999999987631 356789999999999999999999998777665552 11146789999999888655555555
Q ss_pred eeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010 160 YPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215 (215)
Q Consensus 160 ~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~ 215 (215)
+ + ..+.+++++|++|+.||||+|.+.|+|+||
T Consensus 155 l----------------~--------~~iVav~qgn~LatsFHPELT~D~r~Heyf 186 (194)
T COG0311 155 L----------------D--------GRIVAVKQGNILATSFHPELTDDTRLHEYF 186 (194)
T ss_pred e----------------C--------CEEEEEEeCCEEEEecCccccCCccHHHHH
Confidence 3 2 257888999999999999999999999997
No 5
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=100.00 E-value=9.4e-39 Score=261.92 Aligned_cols=194 Identities=19% Similarity=0.287 Sum_probs=151.9
Q ss_pred CEEEEEecC-CChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCC--cchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 1 m~v~il~~~-G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~--~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
|||+|++++ ||+.++.++|+++|+++++++++++++++|+||+||+. ...+..+.+ .++.+.|++++++++|+|||
T Consensus 2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~~~l~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pvlGI 80 (210)
T CHL00188 2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSESELAQVHALVLPGVGSFDLAMKKLEK-KGLITPIKKWIAEGNPFIGI 80 (210)
T ss_pred cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCHHHhhhCCEEEECCCCchHHHHHHHHH-CCHHHHHHHHHHcCCCEEEE
Confidence 699999998 89999999999999999999988888899999999943 356677754 58889999999999999999
Q ss_pred ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeE
Q 028010 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD 155 (215)
Q Consensus 78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~ 155 (215)
|+|||+|++.+++ +..+++|+++++|.+.+. ....++|||||+.+..+.-.....++++|+++++ .+|
T Consensus 81 ClG~Qll~~~~~~---~~~~glg~~~G~v~~~~~-------~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~ 150 (210)
T CHL00188 81 CLGLHLLFETSEE---GKEEGLGIYKGQVKRLKH-------SPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNPWAY 150 (210)
T ss_pred CHHHHHHhhcccc---CCcCCccceeEEEEECCC-------CCCCccCccCCccceecCCcccccCChhhcCCCCCCEEE
Confidence 9999999998865 467899999999998631 2235799999999875320000001569999965 489
Q ss_pred EEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcc
Q 028010 156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRW 211 (215)
Q Consensus 156 ~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~ 211 (215)
++|||.+.+... ..+++++.|+ .+.++++++.+++||+|||||++.+.|.
T Consensus 151 ~~HS~~v~p~~~--~~l~~t~~~~----~~~~v~a~~~~~i~GvQFHPE~s~~~G~ 200 (210)
T CHL00188 151 FVHSYGVMPKSQ--ACATTTTFYG----KQQMVAAIEYDNIFAMQFHPEKSGEFGL 200 (210)
T ss_pred EeCccEecCCCC--ceEEEEEecC----CcceEEEEecCCEEEEecCCccccHhHH
Confidence 999997753222 1344555553 1467899999999999999999987764
No 6
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=100.00 E-value=3.5e-37 Score=244.83 Aligned_cols=174 Identities=42% Similarity=0.704 Sum_probs=150.4
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G 80 (215)
|||+||+++|++.+..++|+++|+++.+++.+++++++|+||+|||.++.+..+..+.++.+.|+++.+ ++|++|||+|
T Consensus 3 ~~igVLalqG~~~Eh~~al~~lG~~v~~v~~~~~l~~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG 81 (179)
T PRK13526 3 QKVGVLAIQGGYQKHADMFKSLGVEVKLVKFNNDFDSIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAG 81 (179)
T ss_pred cEEEEEECCccHHHHHHHHHHcCCcEEEECCHHHHhCCCEEEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHH
Confidence 699999999999999999999999999999999999999999999966544344444688999999885 7899999999
Q ss_pred HHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeEEEEEe
Q 028010 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160 (215)
Q Consensus 81 ~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~ 160 (215)
+|+|++.. ++||++|++|.+|.+|+|..||.....++ .+ +++++|++.|.+..+++.+.++.+|
T Consensus 82 ~qlL~~~s--------~~Lg~idg~V~Rn~~Grq~~sf~~~~~~~-----~~---~~~~vFiRAP~i~~~~~~v~vla~~ 145 (179)
T PRK13526 82 SIILSKGE--------GYLNLLDLEVQRNAYGRQVDSFVADISFN-----DK---NITGVFIRAPKFIVVGNQVDILSKY 145 (179)
T ss_pred HHHHHccC--------CCCCCccEEEEEcCCCCccceeeeecCcC-----Cc---eEEEEEEcCceEeEcCCCcEEEEEE
Confidence 99999852 46999999999999999999997655443 22 2789999999999888887777776
Q ss_pred eCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010 161 PVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215 (215)
Q Consensus 161 ~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~ 215 (215)
. ..+.+++++|++|+.||||+|.|.|+|+||
T Consensus 146 ~------------------------~~~v~v~q~~~l~~~FHPElt~d~r~h~~f 176 (179)
T PRK13526 146 Q------------------------NSPVLLRQANILVSSFHPELTQDPTVHEYF 176 (179)
T ss_pred C------------------------CEEEEEEECCEEEEEeCCccCCCchHHHHH
Confidence 2 246789999999999999999999999998
No 7
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=100.00 E-value=4e-37 Score=243.68 Aligned_cols=178 Identities=60% Similarity=0.971 Sum_probs=148.0
Q ss_pred EEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcC-CcEEEEehHHHH
Q 028010 5 VLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-KPVWGTCAGLIF 83 (215)
Q Consensus 5 il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~-~PilGIC~G~Ql 83 (215)
||++||++.+..+.|+++|.+...++.+++++++|+||||||.++++..+....++.+.|+++++.| +|++|+|+|+.|
T Consensus 1 VLALQG~~~EH~~~l~~lg~~~~~Vr~~~dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIl 80 (188)
T PF01174_consen 1 VLALQGAFREHIRMLERLGAEVVEVRTPEDLEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLIL 80 (188)
T ss_dssp EESSSSSHHHHHHHHHHTTSEEEEE-SGGGGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHH
T ss_pred CCccccChHHHHHHHHHcCCCeEEeCCHHHHccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHH
Confidence 7999999999999999999999999999999999999999999999998888889999999999998 999999999999
Q ss_pred HHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecC--CCeEEEEEee
Q 028010 84 LANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG--PDVDVLADYP 161 (215)
Q Consensus 84 La~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~--~~~~~~Hs~~ 161 (215)
||+...+. +.+.||++|.+|.||+||+|..||+....+|.++ .+++++|++.|.+..+. +.+.++..+
T Consensus 81 La~~v~~~---~q~~Lg~ldi~V~RNafGrQ~~SFe~~l~i~~~~------~~~~avFIRAP~I~~v~~~~~v~vla~~- 150 (188)
T PF01174_consen 81 LAKEVEGQ---GQPLLGLLDITVRRNAFGRQLDSFEADLDIPGLG------EPFPAVFIRAPVIEEVGSPEGVEVLAEL- 150 (188)
T ss_dssp HEEEECSS---CCTSS--EEEEEETTTTCSSSCEEEEEEEETTTE------SEEEEEESS--EEEEE--TTTEEEEEEE-
T ss_pred hhhhhhhc---ccccccceeEEEEccccccchhcEEEEEEeecCC------CcEEEEEcCCcEEEEeeccccccccccc-
Confidence 99998653 5677999999999999999999999988888776 23789999999999885 344444433
Q ss_pred CCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC-CcccccC
Q 028010 162 VPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD-TRWYIIF 215 (215)
Q Consensus 162 ~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~-~~~~~~~ 215 (215)
+ ..+.+++++|++++.||||+|.+ .|+|+||
T Consensus 151 ---------------~--------g~iVav~qgn~latsFHPELT~D~~r~H~yF 182 (188)
T PF01174_consen 151 ---------------D--------GKIVAVRQGNILATSFHPELTDDDTRIHEYF 182 (188)
T ss_dssp ---------------T--------TEEEEEEETTEEEESS-GGGSSTHCHHHHHH
T ss_pred ---------------c--------cceEEEEecCEEEEEeCCcccCchhHHHHHH
Confidence 2 24677889999999999999999 9999998
No 8
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=1.1e-36 Score=249.63 Aligned_cols=192 Identities=19% Similarity=0.290 Sum_probs=149.1
Q ss_pred EEEEEec-CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCC--cchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (215)
Q Consensus 2 ~v~il~~-~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~--~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC 78 (215)
.|+|+++ .||..|+.++|+..+.++..++.++++.++|+||+||+. ...+.++.. .++.+.|++++++++|+||||
T Consensus 1 ~i~iidyg~gNl~s~~~al~~~~~~~~~~~~~~~l~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pilGiC 79 (210)
T PRK14004 1 MIAILDYGMGNIHSCLKAVSLYTKDFVFTSDPETIENSKALILPGDGHFDKAMENLNS-TGLRSTIDKHVESGKPLFGIC 79 (210)
T ss_pred CEEEEECCCchHHHHHHHHHHcCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHHH-cCcHHHHHHHHHcCCCEEEEC
Confidence 0899998 458999999999999999999999999999999999964 456777754 689999999999999999999
Q ss_pred hHHHHHHHhhccCCC----CCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--
Q 028010 79 AGLIFLANKAVGQKL----GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (215)
Q Consensus 79 ~G~QlLa~~~~~~~~----~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-- 152 (215)
+|||+|++++++... +..++||+++++|.+.+. ...++||+||+.+..++ . ..+++|+++++
T Consensus 80 ~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~--------~~~~~ph~Gw~~v~~~~--~--~~~~lf~~l~~~~ 147 (210)
T PRK14004 80 IGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEG--------KDFKVPHIGWNRLQIRR--K--DKSKLLKGIGDQS 147 (210)
T ss_pred HhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCC--------CCCcCCccCcccceecc--C--CCCccccCCCCCC
Confidence 999999999976321 236899999999998641 12468999999886421 0 26789999965
Q ss_pred CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCccc
Q 028010 153 DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWY 212 (215)
Q Consensus 153 ~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~ 212 (215)
++|++|||....... . .+.+.++|+ +..+++++.++|+||+|||||++.+.|..
T Consensus 148 ~v~~~HS~~~~~~~~-l-~~sa~~~~~----g~~~~a~~~~~~i~GvQFHPE~s~~~G~~ 201 (210)
T PRK14004 148 FFYFIHSYRPTGAEG-N-AITGLCDYY----QEKFPAVVEKENIFGTQFHPEKSHTHGLK 201 (210)
T ss_pred EEEEeceeecCCCCc-c-eEEEeeeEC----CEEEEEEEecCCEEEEeCCcccCchhHHH
Confidence 578899985422111 1 234555552 13466777888999999999999977653
No 9
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=5.8e-36 Score=243.32 Aligned_cols=182 Identities=23% Similarity=0.411 Sum_probs=145.0
Q ss_pred CEEEEEec-CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcC-CC-cchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 1 m~v~il~~-~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~G-G~-~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
|||+|+++ .||+.|+.++|+++|++++++++++++.++|+||+|| |. .+.+..+.. ..+.+.|++ .++|+|||
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~~~~d~iIlPG~G~~~~~~~~l~~-~~l~~~i~~---~~~PilGI 76 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVILAADKLFLPGVGTAQAAMDQLRE-RELIDLIKA---CTQPVLGI 76 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHhCCCCEEEECCCCchHHHHHHHHH-cChHHHHHH---cCCCEEEE
Confidence 89999998 4588899999999999999999988888999999999 54 345666654 466676765 48999999
Q ss_pred ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeE
Q 028010 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD 155 (215)
Q Consensus 78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~ 155 (215)
|+|+|+|++++++. +..++||++++++.+.+. ...++|++||+.+... .++++++++++ .+|
T Consensus 77 ClG~Qll~~~~~~~--~~~~~lg~~~g~v~~~~~--------~~~~~p~~G~~~v~~~------~~~~l~~~l~~~~~v~ 140 (196)
T PRK13170 77 CLGMQLLGERSEES--GGVDCLGIIDGPVKKMTD--------FGLPLPHMGWNQVTPQ------AGHPLFQGIEDGSYFY 140 (196)
T ss_pred CHHHHHHhhhcccC--CCCCCcccccEEEEECCC--------CCCCCCccccceeEeC------CCChhhhCCCcCCEEE
Confidence 99999999998652 237789999999998431 1246899999987642 36789999865 467
Q ss_pred EEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcc
Q 028010 156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRW 211 (215)
Q Consensus 156 ~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~ 211 (215)
++|+|..+ +. +.++|+|+++ ..++++++++++||+|||||++.+.|.
T Consensus 141 ~~Hs~~lp--~~--~~~la~s~~~-----~~~~~~~~~~~i~G~QFHPE~~~~~G~ 187 (196)
T PRK13170 141 FVHSYAMP--VN--EYTIAQCNYG-----EPFSAAIQKDNFFGVQFHPERSGAAGA 187 (196)
T ss_pred EECeeecC--CC--CcEEEEecCC-----CeEEEEEEcCCEEEEECCCCCcccccH
Confidence 78887643 22 2688999886 467788888999999999999988775
No 10
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=100.00 E-value=1.6e-35 Score=238.34 Aligned_cols=182 Identities=47% Similarity=0.743 Sum_probs=144.0
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
||+||.++|++.+..++|+++|+++++++++++++++|+||+|||+++.+..+.+..++.+.|++++++++|++|||+|+
T Consensus 1 ~igvl~~qg~~~e~~~~l~~~g~~~~~v~~~~~l~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~ 80 (184)
T TIGR03800 1 KIGVLALQGAVREHARALEALGVEGVEVKRPEQLDEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL 80 (184)
T ss_pred CEEEEEccCCHHHHHHHHHHCCCEEEEECChHHhccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence 79999999999999999999999999999988899999999999987766667665678899999999999999999999
Q ss_pred HHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeEEEEEee
Q 028010 82 IFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP 161 (215)
Q Consensus 82 QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~ 161 (215)
|+|++.+.+.. ...+|++++++.++++|+++.++...+..+..+ ++|+.. .+.|...
T Consensus 81 qlL~~~~~~~~---~~~lg~~~~~v~~~~~g~~~~s~~~~l~~~~~~--------------~~~~~~------~~~h~~~ 137 (184)
T TIGR03800 81 IMLAKEIIGQK---EGYLGLLDMTVERNAYGRQVDSFEAEVDIKGVG--------------DDPITG------VFIRAPK 137 (184)
T ss_pred HHHHhhhccCC---CCccCcEEEEEEeeccCCccccEEEEeecccCC--------------CCcceE------EEEcCCC
Confidence 99999985421 134999999999999888887775433222211 112211 2556655
Q ss_pred CCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010 162 VPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215 (215)
Q Consensus 162 ~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~ 215 (215)
+...|+.. .++|+++.+ +.+++.+++||+|||||++.+.|+|+||
T Consensus 138 v~~lp~~~-~vla~~~~~--------~~a~~~~~~~gvQfHPE~~~~~~~~~~f 182 (184)
T TIGR03800 138 IVSVGNGV-EILAKVGNR--------IVAVRQGNILVSSFHPELTDDHRVHEYF 182 (184)
T ss_pred cccCCCCe-EEEEEeCCe--------eEEEEeCCEEEEEeCCccCCCchHHHHh
Confidence 55544433 677777654 3455788999999999999999999997
No 11
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=2e-35 Score=242.34 Aligned_cols=187 Identities=23% Similarity=0.330 Sum_probs=146.6
Q ss_pred CEEEEEecCC-ChHHHHHHHHHCCC--eEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHH-HcCCcE
Q 028010 1 MVVGVLALQG-SFNEHIAALKRLGV--KGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFV-KMGKPV 74 (215)
Q Consensus 1 m~v~il~~~G-~~~s~~~~l~~~G~--~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~-~~~~Pi 74 (215)
|||+|+++.. |..++.++|+++|+ ++.+++++++++++|+|||||+.. +.+..+++ .++.+.|++.. +.++|+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l~~~d~lIlpG~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~Pv 80 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAVAAADRVVLPGVGAFADCMRGLRA-VGLGEAVIEAVLAAGRPF 80 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHhcCCCEEEECCCCcHHHHHHHHHH-CCcHHHHHHHHHhCCCcE
Confidence 7999999955 78899999999999 888888888999999999999643 33446665 35566555554 589999
Q ss_pred EEEehHHHHHHHhhccCCCCCccccceeeeEEEec-cCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC-
Q 028010 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN-FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP- 152 (215)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~-~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~- 152 (215)
||||+|+|+|++...+. +..+++|+++++|.++ +.+ ...+.|++||+.++.. .++|+|+++++
T Consensus 81 lGiC~G~q~l~~~~~e~--~~~~glg~l~g~v~~~~~~~-------~~~~~p~~G~~~v~~~------~~~~lf~~~~~~ 145 (209)
T PRK13146 81 LGICVGMQLLFERGLEH--GDTPGLGLIPGEVVRFQPDG-------PALKVPHMGWNTVDQT------RDHPLFAGIPDG 145 (209)
T ss_pred EEECHHHHHHhhccccc--CCCCCcceEeEEEEEcCCCC-------CCCccCccChHHeeeC------CCChhccCCCCC
Confidence 99999999999984332 3578999999999986 322 1236899999988742 36889999964
Q ss_pred -CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCc
Q 028010 153 -DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR 210 (215)
Q Consensus 153 -~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~ 210 (215)
.++++||+.+...++ +.++|+|+++ ..+++++.++++||+|||||++.+.+
T Consensus 146 ~~v~~~Hs~~v~~~~~--~~~la~s~~~-----~~~~a~~~~~~i~GvQFHPE~s~~~G 197 (209)
T PRK13146 146 ARFYFVHSYYAQPANP--ADVVAWTDYG-----GPFTAAVARDNLFATQFHPEKSQDAG 197 (209)
T ss_pred CEEEEEeEEEEEcCCC--CcEEEEEcCC-----CEEEEEEecCCEEEEEcCCcccHHHH
Confidence 578899998865443 2789999986 35677777889999999999986544
No 12
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=100.00 E-value=5.7e-35 Score=236.22 Aligned_cols=180 Identities=46% Similarity=0.708 Sum_probs=147.2
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G 80 (215)
|||+|+.++|++.+..++|+..|++++.++.+++++++|+||+|||..+.++.+.+...+.++|+++.++++|++|||+|
T Consensus 2 m~~~i~~~~g~~~~~~~~l~~~g~~~~~~~~~~~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G 81 (189)
T PRK13525 2 MKIGVLALQGAVREHLAALEALGAEAVEVRRPEDLDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAG 81 (189)
T ss_pred CEEEEEEcccCHHHHHHHHHHCCCEEEEeCChhHhccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHH
Confidence 79999999999999999999999999999988889999999999998766666656567789999999999999999999
Q ss_pred HHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeEEEE
Q 028010 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDVLA 158 (215)
Q Consensus 81 ~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~~~H 158 (215)
+|+|++++++. ..+++|++++++.++++|++.+++ ..++++.++++ .+++.|
T Consensus 82 ~QlL~~~~gg~---~~~~lg~~~~~v~~~~~g~~~g~~-----------------------~~~~~~~~~~~~~~~~~~H 135 (189)
T PRK13525 82 MILLAKEIEGY---EQEHLGLLDITVRRNAFGRQVDSF-----------------------EAELDIKGLGEPFPAVFIR 135 (189)
T ss_pred HHHHHhhcccC---CCCceeeEEEEEEEccCCCceeeE-----------------------EecccccCCCCCeEEEEEe
Confidence 99999999763 578999999999998765543221 13345555543 467778
Q ss_pred EeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010 159 DYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215 (215)
Q Consensus 159 s~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~ 215 (215)
++.+...|+. ++++|+++.+ +++++.+++||+|||||++.+.+|++.|
T Consensus 136 ~d~v~~lp~~-~~vlA~~~~~--------~~~~~~~~~~g~QfHPE~~~~~~~~~~f 183 (189)
T PRK13525 136 APYIEEVGPG-VEVLATVGGR--------IVAVRQGNILATSFHPELTDDTRVHRYF 183 (189)
T ss_pred CceeeccCCC-cEEEEEcCCE--------EEEEEeCCEEEEEeCCccCCCchHHHHH
Confidence 7777555543 3789998754 3456788999999999999999998876
No 13
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=100.00 E-value=1.2e-34 Score=233.12 Aligned_cols=179 Identities=51% Similarity=0.786 Sum_probs=145.8
Q ss_pred EEEEecCCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHH
Q 028010 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLI 82 (215)
Q Consensus 3 v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~Q 82 (215)
|+||.++|++.+..++|++.|++++.++..++++++|+||+|||....+..+.+...+.+.|++++++++|+||||+|+|
T Consensus 1 igvl~~qg~~~e~~~~l~~~g~~v~~v~~~~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~q 80 (183)
T cd01749 1 IGVLALQGDFREHIRALERLGVEVIEVRTPEDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLI 80 (183)
T ss_pred CEEEEecCCcHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHH
Confidence 68999999999999999999999999999888999999999999876666555556788999999999999999999999
Q ss_pred HHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec---CCCeEEEEE
Q 028010 83 FLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV---GPDVDVLAD 159 (215)
Q Consensus 83 lLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~---~~~~~~~Hs 159 (215)
+|++.+++. +..+++|++|+++.++++|++.+++..... +.++ +...++.|.
T Consensus 81 lL~~~~~~~--~~~~glG~~~~~v~~~~~g~~~g~~~~~l~-----------------------~~~~~~~~~~~~~~h~ 135 (183)
T cd01749 81 LLAKEVEDQ--GGQPLLGLLDITVRRNAFGRQVDSFEADLD-----------------------IPGLGLGPFPAVFIRA 135 (183)
T ss_pred HHHHHhccc--CCCCccCceeEEEEeeccccccceEEEcCC-----------------------CCcCCCCccEEEEEEC
Confidence 999999764 467899999999999988776655432211 1122 124567777
Q ss_pred eeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010 160 YPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215 (215)
Q Consensus 160 ~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~ 215 (215)
..+...++. ++++|+++.+ +++++++|+||+|||||++.+.++|+||
T Consensus 136 ~~v~~~p~~-~~~la~~~~~--------~~a~~~~~~~g~qfHPE~~~~~~~~~~f 182 (183)
T cd01749 136 PVIEEVGPG-VEVLAEYDGK--------IVAVRQGNVLATSFHPELTDDTRIHEYF 182 (183)
T ss_pred cEEEEcCCC-cEEEEecCCE--------EEEEEECCEEEEEcCCccCCCcchhhhh
Confidence 666444443 3899999875 3477888999999999999999999998
No 14
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=4.1e-34 Score=232.88 Aligned_cols=184 Identities=24% Similarity=0.373 Sum_probs=148.3
Q ss_pred EEEEEecCC-ChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010 2 VVGVLALQG-SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (215)
Q Consensus 2 ~v~il~~~G-~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~PilGIC 78 (215)
.|+|+++.. |+.++.++|+++|++++++++++++.++|+||+||+.. ..+.++.. .++.+.|+++++.++|+||||
T Consensus 1 ~i~vid~g~gn~~~~~~~l~~~g~~v~~~~~~~~l~~~d~lilpG~g~~~~~~~~l~~-~~~~~~i~~~~~~~~PvlGiC 79 (199)
T PRK13181 1 MIAIIDYGAGNLRSVANALKRLGVEAVVSSDPEEIAGADKVILPGVGAFGQAMRSLRE-SGLDEALKEHVEKKQPVLGIC 79 (199)
T ss_pred CEEEEeCCCChHHHHHHHHHHCCCcEEEEcChHHhccCCEEEECCCCCHHHHHHHHHH-CChHHHHHHHHHCCCCEEEEC
Confidence 189999854 88899999999999999998888888999999999533 34445544 577899999999999999999
Q ss_pred hHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeEE
Q 028010 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDV 156 (215)
Q Consensus 79 ~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~~ 156 (215)
+|+|+|+.++++ +..++||++++++.+.+.+. .+.|++||.++... .++|+|+++++ .++.
T Consensus 80 ~G~Qll~~~~~~---~~~~glg~l~~~v~~~~~~~--------~~~~~~G~~~v~~~------~~~~lf~~l~~~~~~~~ 142 (199)
T PRK13181 80 LGMQLLFESSEE---GNVKGLGLIPGDVKRFRSEP--------LKVPQMGWNSVKPL------KESPLFKGIEEGSYFYF 142 (199)
T ss_pred HhHHHhhhhccc---CCcCCcceEEEEEEEcCCCC--------CCCCccCccccccC------CCChhHcCCCCCCEEEE
Confidence 999999999864 46789999999999864210 24689999887642 36789999965 4688
Q ss_pred EEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCc
Q 028010 157 LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR 210 (215)
Q Consensus 157 ~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~ 210 (215)
+|++.+...+.. .++|+|+++ ..++++++.+++||+|||||++.+.+
T Consensus 143 ~Hs~~v~~~~~~--~~lA~s~~~-----~~~~~~~~~~~i~GvQFHPE~~~~~g 189 (199)
T PRK13181 143 VHSYYVPCEDPE--DVLATTEYG-----VPFCSAVAKDNIYAVQFHPEKSGKAG 189 (199)
T ss_pred eCeeEeccCCcc--cEEEEEcCC-----CEEEEEEECCCEEEEECCCccCCHHH
Confidence 899887655543 689999875 46778888889999999999986544
No 15
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=6.5e-33 Score=226.21 Aligned_cols=185 Identities=22% Similarity=0.377 Sum_probs=143.0
Q ss_pred EEEEEecC-CChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHH-HcCCcEEEE
Q 028010 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFV-KMGKPVWGT 77 (215)
Q Consensus 2 ~v~il~~~-G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~-~~~~PilGI 77 (215)
.|+|+++. ||..++.++|+++|++++++++++++.++|+||+||+.+ +.+..+.+ .++.+.|++++ +.++|+|||
T Consensus 1 ~i~iid~g~~n~~~v~~~l~~~g~~~~~~~~~~~l~~~d~lilPG~g~~~~~~~~l~~-~~~~~~l~~~~~~~~~pvlGi 79 (201)
T PRK13152 1 MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLPGVGSFKEAMKNLKE-LGFIEALKEQVLVQKKPILGI 79 (201)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCeEEEECCHHHHcCCCEEEECCCCchHHHHHHHHH-cCcHHHHHHHHHhCCCcEEEE
Confidence 18999984 488899999999999999999988888999999999643 44555554 46677777764 789999999
Q ss_pred ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeE
Q 028010 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVD 155 (215)
Q Consensus 78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~ 155 (215)
|+|||+|+....+. +..++||+++++|.+... ....++|++||++++.. .++++|+++++ +++
T Consensus 80 C~G~Q~l~~~~~~~--~~~~~lg~~~g~v~~~~~-------~~~~~~~~~g~~~v~~~------~~~~l~~~l~~~~~~~ 144 (201)
T PRK13152 80 CLGMQLFLERGYEG--GVCEGLGFIEGEVVKFEE-------DLNLKIPHMGWNELEIL------KQSPLYQGIPEKSDFY 144 (201)
T ss_pred CHhHHHHhhccccc--CCcCCcccccEEEEECCC-------CCCCcCCccCeEEEEEC------CCChhhhCCCCCCeEE
Confidence 99999999974221 357889999999987421 11235789999987631 36789999865 578
Q ss_pred EEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCc
Q 028010 156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR 210 (215)
Q Consensus 156 ~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~ 210 (215)
++|||++...+. .+.|.++++ ..+++++++++++|+|||||++.+.+
T Consensus 145 ~vHS~~v~~~~~---~v~a~~~~g-----~~~~~a~~~~~i~GvQFHPE~~~~~g 191 (201)
T PRK13152 145 FVHSFYVKCKDE---FVSAKAQYG-----HKFVASLQKDNIFATQFHPEKSQNLG 191 (201)
T ss_pred EEcccEeecCCC---cEEEEECCC-----CEEEEEEecCCEEEEeCCCeecChhh
Confidence 899998865442 467777775 45677888999999999999997654
No 16
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=100.00 E-value=1.4e-31 Score=218.26 Aligned_cols=183 Identities=40% Similarity=0.603 Sum_probs=137.4
Q ss_pred CEEEEEecCCChHH----HHHHHHHCCCeEEE--ECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010 1 MVVGVLALQGSFNE----HIAALKRLGVKGVE--IRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 1 m~v~il~~~G~~~s----~~~~l~~~G~~v~~--~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi 74 (215)
|||+||.++|...+ +.++|+++|+++++ ++.++++.++|+||+|||+.+.+..+.++.++.++|+++++.++|+
T Consensus 1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pi 80 (200)
T PRK13527 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPGDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPI 80 (200)
T ss_pred CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCChHHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeE
Confidence 89999999998774 45678888986554 4455678899999999998766656655567889999999999999
Q ss_pred EEEehHHHHHHHhhccC--CCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC
Q 028010 75 WGTCAGLIFLANKAVGQ--KLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (215)
Q Consensus 75 lGIC~G~QlLa~~~~~~--~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~ 152 (215)
||||+|+|+|++++++. .....+++|++++++.+++.|++...+ ..++++.+++.
T Consensus 81 lGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~~~~~~-----------------------~~~~~~~~~~~ 137 (200)
T PRK13527 81 LGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGRQRDSF-----------------------EAEIDLSGLDG 137 (200)
T ss_pred EEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccCccccE-----------------------EEeEeccccCC
Confidence 99999999999998752 122356799999999887543321111 23345666655
Q ss_pred Ce--EEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcccccC
Q 028010 153 DV--DVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215 (215)
Q Consensus 153 ~~--~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~~~~ 215 (215)
.+ ++.|++.+...++. ++++|+++.+ . .+++.+++||+|||||++.+.+++++|
T Consensus 138 ~~~~~~~H~~~v~~lp~~-~~~la~~~~~-------~-~a~~~~~~~g~QfHPE~~~~~~l~~~f 193 (200)
T PRK13527 138 PFHAVFIRAPAITKVGGD-VEVLAKLDDR-------I-VAVEQGNVLATAFHPELTDDTRIHEYF 193 (200)
T ss_pred cceEEEEccccccccCCC-eEEEEEECCE-------E-EEEEECCEEEEEeCCCCCCCCHHHHHH
Confidence 54 56677766554443 3789988865 3 355778999999999999999988876
No 17
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.98 E-value=6e-32 Score=219.89 Aligned_cols=186 Identities=24% Similarity=0.364 Sum_probs=143.2
Q ss_pred EEEEecCC-ChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010 3 VGVLALQG-SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (215)
Q Consensus 3 v~il~~~G-~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~ 79 (215)
|+|+++.. |..++.++|+++|+++++++..++++++|+||+||+.. ..+..+ +..++.+.|+++.++++|+||||+
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~l~~~d~iiipG~~~~~~~~~~~-~~~~~~~~i~~~~~~~~pilGiC~ 79 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANL-RERGLIEALKEAIASGKPFLGICL 79 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHHhccCCEEEECCCCcHHHHHHHH-HHcChHHHHHHHHHCCCcEEEECH
Confidence 67899854 67789999999999999999888888999999999632 223334 335678999999999999999999
Q ss_pred HHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeEEE
Q 028010 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDVL 157 (215)
Q Consensus 80 G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~~~ 157 (215)
|+|+|++++.+. +..+++|++++++.+.+.+ ...+.|++||..+... .++++|+++++ .++.+
T Consensus 80 G~q~l~~~~~~g--~~~~~lg~~~g~v~~~~~~-------~~~~~~~~G~~~v~~~------~~~~lf~~l~~~~~v~~~ 144 (198)
T cd01748 80 GMQLLFESSEEG--GGTKGLGLIPGKVVRFPAS-------EGLKVPHMGWNQLEIT------KESPLFKGIPDGSYFYFV 144 (198)
T ss_pred HHHHhccccccC--CCCCCCCCcceEEEECCCC-------CCceEEEeccceEEEC------CCChhhhCCCCCCeEEEE
Confidence 999999996432 3478899999999885421 0123579999876532 36789999965 46778
Q ss_pred EEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCcc
Q 028010 158 ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRW 211 (215)
Q Consensus 158 Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~ 211 (215)
||+.+..++.. .++|+|+++ ..++++.+++++||+|||||++.+.+.
T Consensus 145 Hs~~v~~~~~~--~~la~s~~~-----~~~~~~~~~~~i~GvQFHPE~~~~~g~ 191 (198)
T cd01748 145 HSYYAPPDDPD--YILATTDYG-----GKFPAAVEKDNIFGTQFHPEKSGKAGL 191 (198)
T ss_pred eEEEEecCCcc--eEEEEecCC-----CeEEEEEEcCCEEEEECCCccccHhHH
Confidence 88888655543 688988875 356666677899999999999976553
No 18
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.98 E-value=5.9e-32 Score=247.42 Aligned_cols=188 Identities=24% Similarity=0.350 Sum_probs=149.6
Q ss_pred EEEEEec-CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (215)
Q Consensus 2 ~v~il~~-~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~PilGIC 78 (215)
+|+|+++ -||..++.++|+++|+++.+++.+++++++|+||+||+.+ ..+..+.+ .++.+.|+++++.++|+||||
T Consensus 8 ~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~~~~l~~~D~lIlpG~gs~~~~m~~L~~-~gl~~~i~~~i~~g~PvLGIC 86 (538)
T PLN02617 8 EVTLLDYGAGNVRSVRNAIRHLGFTIKDVQTPEDILNADRLIFPGVGAFGSAMDVLNN-RGMAEALREYIQNDRPFLGIC 86 (538)
T ss_pred eEEEEECCCCCHHHHHHHHHHCCCeEEEECChhhhccCCEEEECCCCCHHHHHHHHHH-cCHHHHHHHHHHcCCCEEEEC
Confidence 7999998 4589999999999999999999888899999999999643 45666654 578899999999999999999
Q ss_pred hHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC-CeEEE
Q 028010 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DVDVL 157 (215)
Q Consensus 79 ~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-~~~~~ 157 (215)
+|||+|++.+.+. +..++||++++++.+++. ....++|++||+.+... .++|++.+++. .+|++
T Consensus 87 ~G~QlLa~~~~E~--g~~~glg~l~G~v~~~~~-------~~~~~vp~iGw~~V~~~------~~spL~~~l~~~~vy~v 151 (538)
T PLN02617 87 LGLQLLFESSEEN--GPVEGLGVIPGVVGRFDS-------SNGLRVPHIGWNALQIT------KDSELLDGVGGRHVYFV 151 (538)
T ss_pred HHHHHHhhhhhhc--CCccCcccccceEEECCc-------cCCCCCCeecceEEEec------CCChhHhcCCCcEEEEE
Confidence 9999999987542 457899999999998531 11246899999987642 36789988843 58899
Q ss_pred EEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCc
Q 028010 158 ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR 210 (215)
Q Consensus 158 Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~ 210 (215)
|||.+...+.....++++++|+ ..++++++++|+||+|||||++.+.+
T Consensus 152 HSy~v~~~p~~~~~v~a~~~~g-----~~~IaAI~~gnI~GVQFHPE~s~~~G 199 (538)
T PLN02617 152 HSYRATPSDENKDWVLATCNYG-----GEFIASVRKGNVHAVQFHPEKSGATG 199 (538)
T ss_pred eEEEEEecCCCCcEEEEEEccC-----CCcEEEEEeCCEEEEEcCCccCchhH
Confidence 9998644332221456777765 45889999999999999999997553
No 19
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.98 E-value=3.3e-32 Score=230.92 Aligned_cols=190 Identities=24% Similarity=0.322 Sum_probs=154.5
Q ss_pred EEEEEec-CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcC-C-CcchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-G-ESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (215)
Q Consensus 2 ~v~il~~-~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~G-G-~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC 78 (215)
.|.+|++ .||+.|+.++|+.+|+++..+..|.++.++|.||+|| | +...++.|.. .++.+.|+++++.|+|++|||
T Consensus 3 vv~~ld~~agn~~si~nal~hlg~~i~~v~~P~DI~~a~rLIfPGVGnfg~~~D~L~~-~Gf~eplr~YiesgkPfmgic 81 (541)
T KOG0623|consen 3 VVTLLDYGAGNVRSIRNALRHLGFSIKDVQTPGDILNADRLIFPGVGNFGPAMDVLNR-TGFAEPLRKYIESGKPFMGIC 81 (541)
T ss_pred eEEEEecCCccHHHHHHHHHhcCceeeeccCchhhccCceEeecCcccchHHHHHHhh-hhhHHHHHHHHhcCCCeEeeh
Confidence 3566776 6799999999999999999999999999999999999 6 5667888876 789999999999999999999
Q ss_pred hHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC-CeEEE
Q 028010 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DVDVL 157 (215)
Q Consensus 79 ~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-~~~~~ 157 (215)
.|.|+|...+.+. +..++||++++.+.++.- ....+||+|||+.... .+..+|...|. .+||+
T Consensus 82 vGlQaLF~gSvE~--p~skGLgvipg~v~RFD~--------s~k~VPhIGWNsc~v~------sd~effg~~p~~~~YFV 145 (541)
T KOG0623|consen 82 VGLQALFDGSVEN--PPSKGLGVIPGIVGRFDA--------SAKIVPHIGWNSCQVG------SDSEFFGDVPNRHVYFV 145 (541)
T ss_pred hhHHHHhcccccC--CCcCcccccccceecccC--------CCCcCCcccccccccC------CcccccccCCCceEEEE
Confidence 9999999887653 457899999999998641 2346899999987641 13334444444 69999
Q ss_pred EEeeCCCCc---cccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCccc
Q 028010 158 ADYPVPSNK---VLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWY 212 (215)
Q Consensus 158 Hs~~~~~~~---~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~~~ 212 (215)
|||-....+ +...+.+|++.|+ .+.|+++++++|++++|||||+|++.|+.
T Consensus 146 HSyl~~ek~~~len~~wkiat~kYG----~E~Fi~ai~knN~~AtQFHPEKSG~aGL~ 199 (541)
T KOG0623|consen 146 HSYLNREKPKSLENKDWKIATCKYG----SESFISAIRKNNVHATQFHPEKSGEAGLS 199 (541)
T ss_pred eeecccccccCCCCCCceEeeeccC----cHHHHHHHhcCceeeEecccccccchhHH
Confidence 999553221 1122789999998 47899999999999999999999999874
No 20
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.98 E-value=1.4e-31 Score=218.18 Aligned_cols=182 Identities=22% Similarity=0.317 Sum_probs=141.3
Q ss_pred CEEEEEecCC-ChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 1 MVVGVLALQG-SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 1 m~v~il~~~G-~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
|||.||++.+ |..++.++|+++|+++.+++.+++++++|+||+|||.. ..++++ ..+.+.|++++++++|+|||
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~d~iii~G~~~~~~~~~~~---~~~~~~i~~~~~~~~PilgI 77 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEEILDADGIVLPGVGAFGAAMENL---SPLRDVILEAARSGKPFLGI 77 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHHHccCCEEEECCCCCHHHHHHHH---HHHHHHHHHHHHcCCCEEEE
Confidence 8999999965 66789999999999999998777788999999999632 233333 45678999999999999999
Q ss_pred ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC-CeEE
Q 028010 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-DVDV 156 (215)
Q Consensus 78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-~~~~ 156 (215)
|+|+|+|++++.+. ...+++|++++++.+++. ..+.+++||..+... ..+|+++++++ .+++
T Consensus 78 C~G~q~l~~~~~~g--~~~~~lg~~~g~v~~~~~---------~~~~~~~g~~~v~~~------~~~~l~~~l~~~~~~~ 140 (200)
T PRK13143 78 CLGMQLLFESSEEG--GGVRGLGLFPGRVVRFPA---------GVKVPHMGWNTVKVV------KDCPLFEGIDGEYVYF 140 (200)
T ss_pred CHHHHHHhhhhccC--CCCCCcceeeEEEEEcCC---------CCCCCeecceEEEEc------CCChhhccCCCcEEEE
Confidence 99999999987542 356789999999987531 123567899776531 36788888844 3577
Q ss_pred EEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCC
Q 028010 157 LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT 209 (215)
Q Consensus 157 ~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~ 209 (215)
+|++.+...+. ..++|+++++ ..+++++.++++||+|||||++.+.
T Consensus 141 ~Hs~~~~~~~~--~~~la~~~~~-----~~~~~~~~~~~~~gvQfHPE~~~~~ 186 (200)
T PRK13143 141 VHSYYAYPDDE--DYVVATTDYG-----IEFPAAVCNDNVFGTQFHPEKSGET 186 (200)
T ss_pred EeeeeeCCCCc--ceEEEEEcCC-----CEEEEEEEcCCEEEEeCCCccchHH
Confidence 89987765443 2789998864 3467777788999999999998765
No 21
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.97 E-value=1.7e-30 Score=211.24 Aligned_cols=180 Identities=27% Similarity=0.397 Sum_probs=139.1
Q ss_pred EEEEec-CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCC--cchHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010 3 VGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (215)
Q Consensus 3 v~il~~-~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~--~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~ 79 (215)
|+|+++ .||..++.++|+++|+++++++++++++++|+||+||+. .+.++++.+. ....+++++++.++|+||||+
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~~l~~~d~lii~G~~~~~~~~~~l~~~-~~~~l~~~~~~~~~pvlGiC~ 79 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSKEAELADKLILPGVGAFGAAMARLREN-GLDLFVELVVRLGKPVLGICL 79 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHHHhccCCEEEECCCCCHHHHHHHHHHc-CcHHHHHHHHhCCCCEEEECH
Confidence 578887 457889999999999999999988788899999999943 2356666653 334455888889999999999
Q ss_pred HHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeEEE
Q 028010 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDVL 157 (215)
Q Consensus 80 G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~~~ 157 (215)
|+|+|++++.+. +..++||+++++|.+.+. .+.|++||..+... ..+|+|+++++ .++..
T Consensus 80 G~Qll~~~~~~~--~~~~glg~~~~~v~~~~~----------~~~~~~g~~~~~~~------~~~~l~~~l~~~~~v~~~ 141 (196)
T TIGR01855 80 GMQLLFERSEEG--GGVPGLGLIKGNVVKLEA----------RKVPHMGWNEVHPV------KESPLLNGIDEGAYFYFV 141 (196)
T ss_pred HHHHhhhccccC--CCCCCcceeeEEEEECCC----------CCCCcccCeeeeeC------CCChHHhCCCCCCEEEEE
Confidence 999999997442 468899999999988531 14679999876531 36789999976 46677
Q ss_pred EEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCC
Q 028010 158 ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT 209 (215)
Q Consensus 158 Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~ 209 (215)
|++.++..+ . .++++++.+ ..++++++++++||+|||||++.+.
T Consensus 142 Hs~~v~~~~-~--~~~a~~~~g-----~~~~~~~~~~~i~GvQFHPE~~~~~ 185 (196)
T TIGR01855 142 HSYYAVCEE-E--AVLAYADYG-----EKFPAAVQKGNIFGTQFHPEKSGKT 185 (196)
T ss_pred CeeEecCCC-C--cEEEEEcCC-----cEEEEEEecCCEEEEECCCccCcHh
Confidence 887776544 2 567777764 3677888888999999999998653
No 22
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=2.6e-30 Score=211.41 Aligned_cols=186 Identities=24% Similarity=0.340 Sum_probs=143.1
Q ss_pred EEEEEecCC-ChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010 2 VVGVLALQG-SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (215)
Q Consensus 2 ~v~il~~~G-~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~PilGIC 78 (215)
+|.||++.+ |..++.++|+++|+++.+++.+++++++|+||+|||.. +.+..+. ..++.++|+++.+.++|+||||
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~l~~~d~iiipG~~~~~~~~~~~~-~~~~~~~i~~~~~~~~pvlGIC 79 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDPEEILAADGVILPGVGAFPDAMANLR-ERGLDEVIKEAVASGKPLLGIC 79 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHH-HcChHHHHHHHHHCCCcEEEEC
Confidence 488999966 55678999999999999998888889999999999643 2333332 3577889999999999999999
Q ss_pred hHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--CeEE
Q 028010 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP--DVDV 156 (215)
Q Consensus 79 ~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~--~~~~ 156 (215)
+|+|+|++.+.+ .+.+++||++++++.+++.+ .....|++||..+..+ .+++++++++. .++.
T Consensus 80 ~G~Qll~~~~~~--~~~~~~lg~l~g~v~~~~~~-------~~~~~~~~g~~~i~~~------~~~~l~~~l~~~~~v~~ 144 (205)
T PRK13141 80 LGMQLLFESSEE--FGETEGLGLLPGRVRRFPPE-------EGLKVPHMGWNQLELK------KESPLLKGIPDGAYVYF 144 (205)
T ss_pred HHHHHhhhcccc--CCCCCccceEEEEEEEcCCC-------CCCcccEecCccceeC------CCChhhhCCCCCCEEEE
Confidence 999999998743 24678999999999986421 1124678999877642 26789999965 4678
Q ss_pred EEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCCc
Q 028010 157 LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR 210 (215)
Q Consensus 157 ~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~~ 210 (215)
+|++.+..++.. .++|+++++ ..++++...+++||+|||||++.+.+
T Consensus 145 ~Hs~~v~~~~~~--~v~a~~~~~-----~~~~a~~~~~~i~GvQfHPE~~~~~g 191 (205)
T PRK13141 145 VHSYYADPCDEE--YVAATTDYG-----VEFPAAVGKDNVFGAQFHPEKSGDVG 191 (205)
T ss_pred ECeeEeccCCcC--eEEEEEeCC-----cEEEEEEecCCEEEEeCCCccchHHH
Confidence 899888654432 688888764 34666666779999999999986543
No 23
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=99.96 E-value=4.3e-29 Score=192.95 Aligned_cols=192 Identities=36% Similarity=0.593 Sum_probs=145.3
Q ss_pred EEEEEecCCChHHHHHHHHHCC------C--eEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcC-C
Q 028010 2 VVGVLALQGSFNEHIAALKRLG------V--KGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-K 72 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G------~--~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~-~ 72 (215)
.|+||+++|++.+..+.++++- + ++..+..++|+.++|+||||||.++.|..+....+|.+.|..++.++ +
T Consensus 13 VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT~~D~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k 92 (226)
T KOG3210|consen 13 VIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKTKNDLAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSK 92 (226)
T ss_pred EEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEeecCHHHHhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCc
Confidence 5899999999999998888652 2 33456778899999999999999998888877778999999999987 9
Q ss_pred cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC
Q 028010 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (215)
Q Consensus 73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~ 152 (215)
|++|.|+||.+|++.+.++.. ..+.|++++.+|+||.+|+|.+||........+-. ....|++.|++.|....+-.
T Consensus 93 ~~WGTCAGmI~LS~ql~nek~-~~~tL~~lkv~V~RN~FG~QaqSFT~~~~~snfi~---~~~~FpATFIRAPVie~ILD 168 (226)
T KOG3210|consen 93 VTWGTCAGMIYLSQQLSNEKK-LVKTLNLLKVKVKRNAFGRQAQSFTRICDFSNFIP---HCNDFPATFIRAPVIEEILD 168 (226)
T ss_pred cceeechhhhhhhhhhcCCcc-hhhhhhheeEEEeeccccchhhhheehhccccccc---CcccCchhheechhHHHhcC
Confidence 999999999999999876432 56789999999999999999999976543333221 11235677788888777622
Q ss_pred CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEE-eeCCEEEEeeCCccC-CCCcccccC
Q 028010 153 DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAV-RQGNLLGTAFHPELT-ADTRWYIIF 215 (215)
Q Consensus 153 ~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~-~~~~v~g~QFHPE~s-~~~~~~~~~ 215 (215)
+.-+..-|..+ .|++..+.++ +++|++++.||||++ .+.|||.||
T Consensus 169 ~I~V~~l~~~~------------------~nG~~~iVAa~Q~~~iL~TSFHPELa~~D~R~HdW~ 215 (226)
T KOG3210|consen 169 PIHVQVLYKLD------------------GNGQELIVAAKQKNNILATSFHPELAENDIRFHDWF 215 (226)
T ss_pred chhheEEEEec------------------CCCcEEEEEEeccCCEeeeecChhhhcccchHHHHH
Confidence 21111111111 0112344444 458999999999999 899999998
No 24
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.96 E-value=2.8e-28 Score=197.28 Aligned_cols=165 Identities=18% Similarity=0.270 Sum_probs=115.8
Q ss_pred CEEEEEecCCChH-HHHHHHHHCCCeEEEECC----CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRK----PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~----~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
|||.|+++.+++. .+.++|+++|+++++++. +++++++|+||++||+... .+.. .+.++|++ +++++|+|
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~~-~~~~---~~~~~i~~-~~~~~PiL 76 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDVP-RAYP---QLFAMLER-YHQHKSIL 76 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCCh-HHhh---HHHHHHHH-hcCCCCEE
Confidence 8999999999877 477899999999988773 3456789999999987632 1221 23567766 67899999
Q ss_pred EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--
Q 028010 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (215)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~-- 153 (215)
|||+|+|+|+.++| ++|.+.+ +.++.+|+.+.. . .++++|+++++.
T Consensus 77 GIClG~Qlla~~~G--------------g~V~~~~------------~~~~g~~~~v~~---~---~~~~l~~~~~~~~~ 124 (190)
T PRK06895 77 GVCLGHQTLCEFFG--------------GELYNLN------------NVRHGQQRPLKV---R---SNSPLFDGLPEEFN 124 (190)
T ss_pred EEcHHHHHHHHHhC--------------CeEeecC------------CCccCceEEEEE---C---CCChhhhcCCCceE
Confidence 99999999999997 3554432 244666654432 1 367899999765
Q ss_pred eEEEEEeeCCC--CccccCCcceeeecccCCCCCceEEEEeeCC--EEEEeeCCcc-CCCCc
Q 028010 154 VDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQGN--LLGTAFHPEL-TADTR 210 (215)
Q Consensus 154 ~~~~Hs~~~~~--~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~--v~g~QFHPE~-s~~~~ 210 (215)
++++|++.+.. .+... .++|+++ ..++++++.++ +||+|||||+ +.+.|
T Consensus 125 v~~~Hs~~v~~~~lp~~l-~~~a~~~-------~~~i~a~~~~~~pi~GvQFHPE~~~~~~g 178 (190)
T PRK06895 125 IGLYHSWAVSEENFPTPL-EITAVCD-------ENVVMAMQHKTLPIYGVQFHPESYISEFG 178 (190)
T ss_pred EEcchhheecccccCCCe-EEEEECC-------CCcEEEEEECCCCEEEEEeCCCcCCCcch
Confidence 56778887752 22221 3344433 34788887764 9999999998 44443
No 25
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.96 E-value=3.2e-28 Score=203.42 Aligned_cols=169 Identities=18% Similarity=0.067 Sum_probs=120.1
Q ss_pred CEEEEEecCC--ChHHHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCC
Q 028010 1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK 72 (215)
Q Consensus 1 m~v~il~~~G--~~~s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~ 72 (215)
|||.||...+ ....+.+.|++.|.++++++. +++++++|++||+||..+..+...+...+.++|+++++.++
T Consensus 8 ~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~ 87 (239)
T PRK06490 8 RPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENK 87 (239)
T ss_pred ceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCC
Confidence 6899997655 455688999999999887753 23577899999999975443333333345789999999999
Q ss_pred cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC
Q 028010 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (215)
Q Consensus 73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~ 152 (215)
|+||||+|+|+|+.++| ++|.+++. ..+++||..+..+ ...+++.+++.
T Consensus 88 PvLGIC~G~Qlla~alG--------------G~V~~~~~-----------G~~e~G~~~i~~~------~~~~~~~~~~~ 136 (239)
T PRK06490 88 PFLGICLGAQMLARHLG--------------ARVAPHPD-----------GRVEIGYYPLRPT------EAGRALMHWPE 136 (239)
T ss_pred CEEEECHhHHHHHHHcC--------------CEeecCCC-----------CCCccceEEeEEC------CCcccccCCCC
Confidence 99999999999999997 46666431 1247788766532 13344555555
Q ss_pred CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC
Q 028010 153 DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD 208 (215)
Q Consensus 153 ~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~ 208 (215)
.++.+|++.. ..|+. +.++|+|+.| .++++..++++||+|||||++.+
T Consensus 137 ~~~~~H~d~~-~lP~~-~~~LA~s~~~------~~qa~~~~~~v~g~QfHPE~~~~ 184 (239)
T PRK06490 137 MVYHWHREGF-DLPAG-AELLATGDDF------PNQAFRYGDNAWGLQFHPEVTRA 184 (239)
T ss_pred EEEEECCccc-cCCCC-CEEEEeCCCC------CeEEEEeCCCEEEEeeCccCCHH
Confidence 6777788763 33433 4899999987 34444445589999999999853
No 26
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.95 E-value=5.2e-28 Score=201.72 Aligned_cols=172 Identities=14% Similarity=0.115 Sum_probs=121.5
Q ss_pred CEEEEEecCCC--hHHHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcchH---HHHHhh--CCHHHHHHHH
Q 028010 1 MVVGVLALQGS--FNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTTM---ARLAEY--HNLFPALREF 67 (215)
Q Consensus 1 m~v~il~~~G~--~~s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~~~---~~l~~~--~~l~~~i~~~ 67 (215)
|||.|+..... ...+...+++.|+++++++. +.+++++|+||++||+.+.. +..++. ....++|+++
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~ 80 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQA 80 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHH
Confidence 89999886552 33567788999998877542 12456899999999965421 112221 1346789999
Q ss_pred HHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCcee
Q 028010 68 VKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV 147 (215)
Q Consensus 68 ~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~ 147 (215)
++.++|+||||+|+|+|++++| ++|.+++ .+++||.+++.+. .+ .++|++
T Consensus 81 ~~~~~PvlGIC~G~Qlla~alG--------------g~V~~~~-------------~~e~G~~~v~lt~-~g--~~d~l~ 130 (235)
T PRK08250 81 IKAGKAVIGVCLGAQLIGEALG--------------AKYEHSP-------------EKEIGYFPITLTE-AG--LKDPLL 130 (235)
T ss_pred HHcCCCEEEEChhHHHHHHHhC--------------ceeccCC-------------CCceeEEEEEEcc-cc--ccCchh
Confidence 9999999999999999999997 4555542 2467876655322 11 367899
Q ss_pred eecCCCeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC
Q 028010 148 LDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD 208 (215)
Q Consensus 148 ~~~~~~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~ 208 (215)
.++++.+.+.|||.+....+..++++|+|+.| .++++..++++||+|||||++.+
T Consensus 131 ~~~~~~~~v~~~H~d~~~lP~~a~~LA~s~~~------~~qa~~~~~~~~g~QfHPE~~~~ 185 (235)
T PRK08250 131 SHFGSTLTVGHWHNDMPGLTDQAKVLATSEGC------PRQIVQYSNLVYGFQCHMEFTVE 185 (235)
T ss_pred hcCCCCcEEEEEecceecCCCCCEEEECCCCC------CceEEEeCCCEEEEeecCcCCHH
Confidence 99888887777776543333345899999988 45555556689999999999865
No 27
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.95 E-value=4.2e-28 Score=202.11 Aligned_cols=167 Identities=16% Similarity=0.122 Sum_probs=115.3
Q ss_pred EEEEEecCC--ChHHHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcch-----HHHHHhhCCHHHHHHHHH
Q 028010 2 VVGVLALQG--SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT-----MARLAEYHNLFPALREFV 68 (215)
Q Consensus 2 ~v~il~~~G--~~~s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~~-----~~~l~~~~~l~~~i~~~~ 68 (215)
||.|+...- +..++.++|++.|.++++++. +.++.++|+||++||+.+. +.++ ..+.++|++++
T Consensus 4 ~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~---~~~~~~i~~~~ 80 (234)
T PRK07053 4 TAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFL---APEIALLRQRL 80 (234)
T ss_pred eEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcH---HHHHHHHHHHH
Confidence 788887633 456789999999999888754 2345679999999986433 2344 34578999999
Q ss_pred HcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceee
Q 028010 69 KMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL 148 (215)
Q Consensus 69 ~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~ 148 (215)
+.++|+||||+|+|+|++++|+ +|.++ +.+++||..+..+. .+ ..+|+ .
T Consensus 81 ~~~~PvlGIC~G~Qlla~alGg--------------~V~~~-------------~~~e~G~~~i~~t~-~g--~~~pl-~ 129 (234)
T PRK07053 81 AAGLPTLGICLGAQLIARALGA--------------RVYPG-------------GQKEIGWAPLTLTD-AG--RASPL-R 129 (234)
T ss_pred HCCCCEEEECccHHHHHHHcCC--------------cEecC-------------CCCeEeEEEEEEec-cc--cCChh-h
Confidence 9999999999999999999973 34332 13466776554321 11 24555 3
Q ss_pred ecCCCeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC
Q 028010 149 DVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD 208 (215)
Q Consensus 149 ~~~~~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~ 208 (215)
++++.+.++|||.+....+..++++|+|+.| ..+++..++++||+|||||++.+
T Consensus 130 ~~~~~~~~~~~H~d~~~lP~ga~~La~s~~~------~~qaf~~g~~~~g~QfHpE~~~~ 183 (234)
T PRK07053 130 HLGAGTPVLHWHGDTFDLPEGATLLASTPAC------RHQAFAWGNHVLALQFHPEARED 183 (234)
T ss_pred cCCCcceEEEEeCCEEecCCCCEEEEcCCCC------CeeEEEeCCCEEEEeeCccCCHH
Confidence 5655555555554322222234899999987 34454455689999999999875
No 28
>PRK05665 amidotransferase; Provisional
Probab=99.95 E-value=4.8e-27 Score=196.32 Aligned_cols=169 Identities=14% Similarity=0.111 Sum_probs=117.1
Q ss_pred CEEEEEecC----------CChHH-HHHHHHHCCC--eEEEEC-----CCCCCCCcCEEEEcCCCcchHHHHHhhCCHHH
Q 028010 1 MVVGVLALQ----------GSFNE-HIAALKRLGV--KGVEIR-----KPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62 (215)
Q Consensus 1 m~v~il~~~----------G~~~s-~~~~l~~~G~--~v~~~~-----~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~ 62 (215)
|||+||..+ |+|.. +.+.|...+. ++++++ .+.+++++|++|++||..+.++...|...+.+
T Consensus 3 mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~dgiiitGs~~~v~~~~pwi~~l~~ 82 (240)
T PRK05665 3 LRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPADDEKFDAYLVTGSKADSFGTDPWIQTLKT 82 (240)
T ss_pred eEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCCcccCCEEEECCCCCCccccchHHHHHHH
Confidence 689999753 45555 3445666664 444443 13456789999999997665554555456789
Q ss_pred HHHHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeee
Q 028010 63 ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFI 142 (215)
Q Consensus 63 ~i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~ 142 (215)
+|++++++++|+||||+|+|+|++++| ++|.+++.| .++|+..+..+ .
T Consensus 83 ~i~~~~~~~~PilGIC~GhQlla~AlG--------------G~V~~~~~G------------~e~G~~~~~~~------~ 130 (240)
T PRK05665 83 YLLKLYERGDKLLGVCFGHQLLALLLG--------------GKAERASQG------------WGVGIHRYQLA------A 130 (240)
T ss_pred HHHHHHhcCCCEEEEeHHHHHHHHHhC--------------CEEEeCCCC------------cccceEEEEec------C
Confidence 999999999999999999999999997 466665422 13344332211 2
Q ss_pred eCceeeecCCCeEEEEEeeC--CCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC
Q 028010 143 RAPAVLDVGPDVDVLADYPV--PSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD 208 (215)
Q Consensus 143 ~~pl~~~~~~~~~~~Hs~~~--~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~ 208 (215)
..+++.+++..+..++||.+ ...|+. +.++|+|+.| .++++..++++||+|||||++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~H~D~V~~LP~g-a~~La~s~~~------~~q~~~~~~~~~g~QfHPE~~~~ 191 (240)
T PRK05665 131 HAPWMSPAVTELTLLISHQDQVTALPEG-ATVIASSDFC------PFAAYHIGDQVLCFQGHPEFVHD 191 (240)
T ss_pred CCccccCCCCceEEEEEcCCeeeeCCCC-cEEEEeCCCC------cEEEEEeCCCEEEEecCCcCcHH
Confidence 45677777666666666554 444543 4899999988 44554456689999999999876
No 29
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.95 E-value=3.6e-27 Score=188.92 Aligned_cols=160 Identities=19% Similarity=0.258 Sum_probs=113.5
Q ss_pred EEEEecCCC-hHHHHHHHHHCCCeEEEECCCC-----CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010 3 VGVLALQGS-FNEHIAALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (215)
Q Consensus 3 v~il~~~G~-~~s~~~~l~~~G~~v~~~~~~~-----~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG 76 (215)
|+|+++... ..++.++|+++|++++++.... ++.++|+||++||..+.++.. ..+..+...+.++|+||
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~~~~~~~-----~~~~~~~~~~~~~PilG 75 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEED-----APRVDPEIFELGVPVLG 75 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCcccccccc-----cchhhHHHHhcCCCEEE
Confidence 568887544 4468899999999998887542 467899999999975433211 01223444456999999
Q ss_pred EehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--e
Q 028010 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--V 154 (215)
Q Consensus 77 IC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--~ 154 (215)
||+|||+|+.++| +++.++ +.|++||+.+... ..+++|.+++.. +
T Consensus 76 IC~G~Qll~~~~g--------------g~v~~~-------------~~~~~G~~~v~~~------~~~~l~~~~~~~~~~ 122 (181)
T cd01742 76 ICYGMQLIAKALG--------------GKVERG-------------DKREYGKAEIEID------DSSPLFEGLPDEQTV 122 (181)
T ss_pred EcHHHHHHHHhcC--------------CeEEeC-------------CCCcceEEEEEec------CCChhhcCCCCceEE
Confidence 9999999999986 345543 2357888766421 367889888654 5
Q ss_pred EEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEee-C-CEEEEeeCCccCCC
Q 028010 155 DVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ-G-NLLGTAFHPELTAD 208 (215)
Q Consensus 155 ~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~-~-~v~g~QFHPE~s~~ 208 (215)
++.|++.+...++.. .++|+++.+ .+++++. + ++||+|||||++.+
T Consensus 123 ~~~H~~~v~~l~~~~-~~la~~~~~-------~i~a~~~~~~~~~g~QfHPE~~~~ 170 (181)
T cd01742 123 WMSHGDEVVKLPEGF-KVIASSDNC-------PVAAIANEEKKIYGVQFHPEVTHT 170 (181)
T ss_pred EcchhhhhhhcCCCc-EEEEeCCCC-------CEEEEEeCCCcEEEEEcCCccccC
Confidence 778888775555433 789998865 4555554 3 89999999999975
No 30
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.94 E-value=2.3e-27 Score=192.60 Aligned_cols=168 Identities=19% Similarity=0.175 Sum_probs=118.5
Q ss_pred EEEEEecCCChHH-HHHHHHHCC-CeEEEECC---CCCC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010 2 VVGVLALQGSFNE-HIAALKRLG-VKGVEIRK---PDQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 2 ~v~il~~~G~~~s-~~~~l~~~G-~~v~~~~~---~~~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi 74 (215)
+|.|+++.+.|.. +.+++++.| +..+++.. .+.+ .+.|++|++||+.+.++.-.|.....++|++....++|+
T Consensus 3 ~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pv 82 (198)
T COG0518 3 KILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPV 82 (198)
T ss_pred EEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCE
Confidence 8999999998886 567899999 54444332 2223 356999999998655433223345678888887778889
Q ss_pred EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCe
Q 028010 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV 154 (215)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~ 154 (215)
||||+|||+||.++| ++|.+++ ..++||.+++.+. .++++|++++..+
T Consensus 83 LGIC~G~Ql~A~~lG--------------g~V~~~~-------------~~E~G~~~v~~~~-----~~~~l~~gl~~~~ 130 (198)
T COG0518 83 LGICLGHQLLAKALG--------------GKVERGP-------------KREIGWTPVELTE-----GDDPLFAGLPDLF 130 (198)
T ss_pred EEEChhHHHHHHHhC--------------CEEeccC-------------CCccceEEEEEec-----CccccccCCcccc
Confidence 999999999999997 4666642 1477887665321 1347899986654
Q ss_pred -EEEEEeeC--CCCccccCCcceeeecccCCCCCceEEEEee-CCEEEEeeCCccCCCC
Q 028010 155 -DVLADYPV--PSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ-GNLLGTAFHPELTADT 209 (215)
Q Consensus 155 -~~~Hs~~~--~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~-~~v~g~QFHPE~s~~~ 209 (215)
.+.|||.+ ...|+. ++++|+|+.| + +++++. .++||+|||||++.+.
T Consensus 131 ~~v~~sH~D~v~~lP~g-~~vlA~s~~c------p-~qa~~~~~~~~gvQFHpEv~~~~ 181 (198)
T COG0518 131 TTVFMSHGDTVVELPEG-AVVLASSETC------P-NQAFRYGKRAYGVQFHPEVTHEY 181 (198)
T ss_pred CccccchhCccccCCCC-CEEEecCCCC------h-hhheecCCcEEEEeeeeEEeHHH
Confidence 35555544 544553 4899999988 3 455554 5999999999998743
No 31
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.94 E-value=4.3e-27 Score=189.87 Aligned_cols=160 Identities=20% Similarity=0.227 Sum_probs=114.9
Q ss_pred EEEEecCC-ChHHHHHHHHHCCCeEEEECCC---CCCCCc--CEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010 3 VGVLALQG-SFNEHIAALKRLGVKGVEIRKP---DQLQNV--SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (215)
Q Consensus 3 v~il~~~G-~~~s~~~~l~~~G~~v~~~~~~---~~l~~~--d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG 76 (215)
|+|+++.- +..++.++|+++|+++++++.. +++..+ |+||++||..+.+.. ...++++.+++.++|+||
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~Gg~~~~~~~-----~~~~~i~~~~~~~~PilG 75 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAE-----NAPRADEKIFELGVPVLG 75 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEECCCCCCcCcC-----CchHHHHHHHhCCCCEEE
Confidence 56888754 4557889999999999887543 344444 499999997654321 224678888889999999
Q ss_pred EehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--e
Q 028010 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--V 154 (215)
Q Consensus 77 IC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--~ 154 (215)
||+|||+|+.++| +++.++ +.+++||..+..+ ..+++|.++++. +
T Consensus 76 IC~G~Qll~~~lg--------------g~v~~~-------------~~~~~g~~~v~~~------~~~~l~~~~~~~~~~ 122 (188)
T TIGR00888 76 ICYGMQLMAKQLG--------------GEVGRA-------------EKREYGKAELEIL------DEDDLFRGLPDESTV 122 (188)
T ss_pred ECHHHHHHHHhcC--------------ceEecC-------------CCccceeEEEEEe------cCCHhhcCCCCCcEE
Confidence 9999999999986 355543 2357788765431 256888888654 5
Q ss_pred EEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe-eC-CEEEEeeCCccCCC
Q 028010 155 DVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR-QG-NLLGTAFHPELTAD 208 (215)
Q Consensus 155 ~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~-~~-~v~g~QFHPE~s~~ 208 (215)
+..|++.+...+.. ..++|+++.+ .+++++ ++ ++||+|||||++..
T Consensus 123 ~~~H~~~v~~l~~~-~~vla~~~~~-------~v~a~~~~~~~~~g~QfHPE~~~~ 170 (188)
T TIGR00888 123 WMSHGDKVKELPEG-FKVLATSDNC-------PVAAMAHEEKPIYGVQFHPEVTHT 170 (188)
T ss_pred EeEccceeecCCCC-CEEEEECCCC-------CeEEEEECCCCEEEEeeCCccCCC
Confidence 66888887544443 2688888765 455555 44 89999999999874
No 32
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.94 E-value=2.2e-27 Score=198.16 Aligned_cols=171 Identities=20% Similarity=0.175 Sum_probs=116.4
Q ss_pred CEEEEEecC----------CChHHHH-HHHHHCCCeEEEECCC-----CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHH
Q 028010 1 MVVGVLALQ----------GSFNEHI-AALKRLGVKGVEIRKP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (215)
Q Consensus 1 m~v~il~~~----------G~~~s~~-~~l~~~G~~v~~~~~~-----~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i 64 (215)
.||+||..+ |+|.... +.|...|.++++++.. .++.++|+|||+||+.+.++...|...+.++|
T Consensus 2 ~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i 81 (237)
T PRK09065 2 KPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAPDDFAGVIITGSWAMVTDRLDWSERTADWL 81 (237)
T ss_pred CcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCCCCCChhhcCEEEEeCCCcccCCCchhHHHHHHHH
Confidence 069999743 3444433 3455678887776532 24568999999999765544444444568899
Q ss_pred HHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeC
Q 028010 65 REFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRA 144 (215)
Q Consensus 65 ~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~ 144 (215)
+++++.++|+||||+|+|+|+.++|+ +|.+++. ..++||..++.+. .+ ..+
T Consensus 82 ~~~~~~~~PvlGIC~G~Qlla~alGg--------------~V~~~~~------------g~e~G~~~v~~~~-~~--~~~ 132 (237)
T PRK09065 82 RQAAAAGMPLLGICYGHQLLAHALGG--------------EVGYNPA------------GRESGTVTVELHP-AA--ADD 132 (237)
T ss_pred HHHHHCCCCEEEEChhHHHHHHHcCC--------------ccccCCC------------CCccceEEEEEcc-cc--ccC
Confidence 99999999999999999999999973 4444432 1345665444211 11 256
Q ss_pred ceeeecCCC--eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe-eCCEEEEeeCCccCCC
Q 028010 145 PAVLDVGPD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR-QGNLLGTAFHPELTAD 208 (215)
Q Consensus 145 pl~~~~~~~--~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~-~~~v~g~QFHPE~s~~ 208 (215)
|+|.++++. ++.+|++.+...|+. +.++|+|++| . +++++ ++++||+|||||++.+
T Consensus 133 ~l~~~~~~~~~v~~~H~d~v~~lp~~-~~~la~s~~~------~-iqa~~~~~~i~gvQfHPE~~~~ 191 (237)
T PRK09065 133 PLFAGLPAQFPAHLTHLQSVLRLPPG-AVVLARSAQD------P-HQAFRYGPHAWGVQFHPEFTAH 191 (237)
T ss_pred hhhhcCCccCcEeeehhhhhhhCCCC-CEEEEcCCCC------C-eeEEEeCCCEEEEEeCCcCCHH
Confidence 788888664 466777776554543 3899999987 3 45555 4589999999999764
No 33
>PRK00758 GMP synthase subunit A; Validated
Probab=99.94 E-value=1.2e-26 Score=186.62 Aligned_cols=157 Identities=21% Similarity=0.235 Sum_probs=111.6
Q ss_pred EEEEecCCChH-HHHHHHHHCCCeEEEECC---CCCCCCc-CEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 3 VGVLALQGSFN-EHIAALKRLGVKGVEIRK---PDQLQNV-SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 3 v~il~~~G~~~-s~~~~l~~~G~~v~~~~~---~~~l~~~-d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
|+|+++.+.+. ++.++|+++|+++++++. +++++++ |+||++||+. +++. ..+.++++ +.++|+|||
T Consensus 2 i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~l~~~~dgivi~Gg~~--~~~~---~~~~~~l~---~~~~PilGI 73 (184)
T PRK00758 2 IVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIKAFEDGLILSGGPD--IERA---GNCPEYLK---ELDVPILGI 73 (184)
T ss_pred EEEEECCCchHHHHHHHHHHcCCcEEEEECCCCHHHHhhcCCEEEECCCCC--hhhc---cccHHHHH---hCCCCEEEE
Confidence 88999877666 577899999999988773 3456677 9999999973 2222 23344554 468999999
Q ss_pred ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--eE
Q 028010 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VD 155 (215)
Q Consensus 78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~--~~ 155 (215)
|+|||+|+.++| ++|.+++ .+++||..+..+ ..+++|.++++. ++
T Consensus 74 C~G~Q~L~~a~G--------------g~v~~~~-------------~~~~g~~~i~~~------~~~~l~~~~~~~~~~~ 120 (184)
T PRK00758 74 CLGHQLIAKAFG--------------GEVGRGE-------------YGEYALVEVEIL------DEDDILKGLPPEIRVW 120 (184)
T ss_pred eHHHHHHHHhcC--------------cEEecCC-------------CceeeeEEEEEc------CCChhhhCCCCCcEEE
Confidence 999999999986 3555432 346677554321 246788888654 56
Q ss_pred EEEEeeCCCCccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccCCC
Q 028010 156 VLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTAD 208 (215)
Q Consensus 156 ~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s~~ 208 (215)
+.|++.+...++. ..++|++++| .+++++. .++||+|||||++..
T Consensus 121 ~~H~~~v~~l~~~-~~~la~~~~~-------~v~a~~~~~~~~~g~QfHPE~~~~ 167 (184)
T PRK00758 121 ASHADEVKELPDG-FEILARSDIC-------EVEAMKHKEKPIYGVQFHPEVAHT 167 (184)
T ss_pred eehhhhhhhCCCC-CEEEEECCCC-------CEEEEEECCCCEEEEEcCCccCCC
Confidence 7788776555543 3789999987 3555553 359999999999764
No 34
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.93 E-value=3.6e-25 Score=178.03 Aligned_cols=159 Identities=20% Similarity=0.248 Sum_probs=111.9
Q ss_pred EEEEecCCChHH-HHHHHHHCCCeEEEECCCC------CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 3 v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~------~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
|.|+++.+.|.. +.+.|+++|+++++++..+ ++.++|+||++||..+..+. ...+.+++++++++|+|
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~-----~~~~~i~~~~~~~~Pvl 75 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDA-----GISLEIIRALAGKVPIL 75 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccc-----hhHHHHHHHHhcCCCEE
Confidence 578899898885 6789999999998886532 35789999998886543221 12445666677899999
Q ss_pred EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccC-CCCCCcceeeeeeeCceeeecCC--
Q 028010 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS-QEGGPETFRGVFIRAPAVLDVGP-- 152 (215)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw-~~~~~~~~~~~~~~~pl~~~~~~-- 152 (215)
|||+|+|+|+.++| +++.+.+ .++.|| ..+. ...+++|+++++
T Consensus 76 GIC~G~Qlla~~~G--------------g~v~~~~-------------~~~~g~~~~v~-------~~~~~~~~~~~~~~ 121 (184)
T cd01743 76 GVCLGHQAIAEAFG--------------GKVVRAP-------------EPMHGKTSEIH-------HDGSGLFKGLPQPF 121 (184)
T ss_pred EECHhHHHHHHHhC--------------CEEEeCC-------------CCCcCceeEEE-------ECCCccccCCCCCc
Confidence 99999999999987 4555532 223343 2221 135678888865
Q ss_pred CeEEEEEeeCCCCccc-cCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccCC
Q 028010 153 DVDVLADYPVPSNKVL-YSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTA 207 (215)
Q Consensus 153 ~~~~~Hs~~~~~~~~~-~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s~ 207 (215)
.++..|+|.+...+.. .+.++|+++.| .+++++.+ ++||+|||||+..
T Consensus 122 ~~~~~H~~~v~~~~~~~~~~~la~~~~~-------~v~a~~~~~~~i~gvQfHPE~~~ 172 (184)
T cd01743 122 TVGRYHSLVVDPDPLPDLLEVTASTEDG-------VIMALRHRDLPIYGVQFHPESIL 172 (184)
T ss_pred EEEeCcEEEEecCCCCceEEEEEeCCCC-------eEEEEEeCCCCEEEEeeCCCcCC
Confidence 4677888877554432 12688888875 67777755 4999999999943
No 35
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.93 E-value=2.1e-25 Score=183.55 Aligned_cols=161 Identities=20% Similarity=0.214 Sum_probs=113.2
Q ss_pred CEEEEEecCCChHH-HHHHHHHCCCeEEEECCCC----C----CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcC
Q 028010 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----Q----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG 71 (215)
Q Consensus 1 m~v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~----~----l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~ 71 (215)
|||.|+++.+.+.. +.+.|+++|+++.+++... + ++++|+||++||+.+..+ . ....++++++.+++
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~-~---~~~~~~i~~~~~~~ 76 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPER-A---GASIDMVRACAAAG 76 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhh-c---chHHHHHHHHHhCC
Confidence 89999999887664 5688999999988876432 1 347999999999765322 2 22357889988899
Q ss_pred CcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecC
Q 028010 72 KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG 151 (215)
Q Consensus 72 ~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~ 151 (215)
+|+||||+|+|+|+.++| ++|.+.+ .++.|+.... ....+++|.+++
T Consensus 77 ~PiLGIC~G~Qlla~a~G--------------G~v~~~~-------------~~~~g~~~~v------~~~~~~~~~~~~ 123 (214)
T PRK07765 77 TPLLGVCLGHQAIGVAFG--------------ATVDRAP-------------ELLHGKTSSV------HHTGVGVLAGLP 123 (214)
T ss_pred CCEEEEccCHHHHHHHhC--------------CEEeeCC-------------CCccCceeEE------EECCCccccCCC
Confidence 999999999999999997 3555432 2233442110 012445777775
Q ss_pred CC--eEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccC
Q 028010 152 PD--VDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELT 206 (215)
Q Consensus 152 ~~--~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s 206 (215)
.. ++.+|++.+. ..++. ..++|++++| .+++++.+ ++||+|||||++
T Consensus 124 ~~~~v~~~H~~~v~~~~lp~~-~~vla~s~~~-------~vqa~~~~~~~i~gvQfHPE~~ 176 (214)
T PRK07765 124 DPFTATRYHSLTILPETLPAE-LEVTARTDSG-------VIMAVRHRELPIHGVQFHPESV 176 (214)
T ss_pred CccEEEecchheEecccCCCc-eEEEEEcCCC-------cEEEEEeCCCCEEEEeeCCCcc
Confidence 53 5667888774 23333 2789999876 46777654 699999999985
No 36
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.93 E-value=4.6e-25 Score=178.52 Aligned_cols=167 Identities=18% Similarity=0.164 Sum_probs=115.8
Q ss_pred EEEEEecCCChHH-HHHHHHHCCCeEEEECCCC----CCC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 2 ~v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~----~l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi 74 (215)
.|.+++..++|.. +++.|+++|+++.+++..+ ++. ++|+||+.||+.+..+. ....+.++. .+.++|+
T Consensus 1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~----~~~~~~i~~-~~~~~Pi 75 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEA----GISLAVIRH-FADKLPI 75 (191)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhC----CCchHHHHH-hcCCCCE
Confidence 1889999998885 7889999999999887542 232 57999999998765432 112455554 4679999
Q ss_pred EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--
Q 028010 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (215)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-- 152 (215)
||||+|+|+|+.++| ++|.+.+ .+++||..+... ..+++|++++.
T Consensus 76 LGIC~G~Qlla~~~G--------------G~v~~~~-------------~~~~G~~~~~~~------~~~~lf~~l~~~~ 122 (191)
T PRK06774 76 LGVCLGHQALGQAFG--------------ARVVRAR-------------QVMHGKTSAICH------SGQGVFRGLNQPL 122 (191)
T ss_pred EEECHHHHHHHHHhC--------------CEEEeCC-------------cceecceEEEEe------cCchhhcCCCCCc
Confidence 999999999999987 4555532 134587654321 35678888854
Q ss_pred CeEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCcc-CCCCc
Q 028010 153 DVDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPEL-TADTR 210 (215)
Q Consensus 153 ~~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~-s~~~~ 210 (215)
.++++|++.+. ..++. ..++|+|++++ ....++++++. ++||+|||||+ +...|
T Consensus 123 ~v~~~Hs~~v~~~~lp~~-~~vlA~s~~d~---~~~~i~~~~~~~~~i~GvQfHPE~~~~~~G 181 (191)
T PRK06774 123 TVTRYHSLVIAADSLPGC-FELTAWSERGG---EMDEIMGIRHRTLPLEGVQFHPESILSEQG 181 (191)
T ss_pred EEEEeCcceeeccCCCCC-eEEEEEeCCCC---CcceEEEEEeCCCCEEEEEECCCcCCCccH
Confidence 57888998773 33332 27899988651 01234555554 89999999999 55444
No 37
>PLN02347 GMP synthetase
Probab=99.93 E-value=2.5e-25 Score=204.11 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=117.4
Q ss_pred EEEEEecCCChH-HHHHHHHHCCCeEEEECCC---CCCC--CcCEEEEcCCCcchHHHHHhhCCHH-HHHHHHHHcCCcE
Q 028010 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP---DQLQ--NVSSLIIPGGESTTMARLAEYHNLF-PALREFVKMGKPV 74 (215)
Q Consensus 2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~---~~l~--~~d~lil~GG~~~~~~~l~~~~~l~-~~i~~~~~~~~Pi 74 (215)
||+||+|...|. ++.++|+++|+.++++... +++. ++|+||++||+.+.++.-. ..+. ..++...+.++|+
T Consensus 12 ~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~~~~~i~~~~~dgIILsGGP~sv~~~~~--p~~~~~i~~~~~~~~iPI 89 (536)
T PLN02347 12 VVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGA--PTVPEGFFDYCRERGVPV 89 (536)
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCeEEEEECCCCHHHHhcCCCCEEEECCCCCcccccCC--chhhHHHHHHHHhcCCcE
Confidence 799999988776 6788999999998887432 3333 5899999999765432100 1112 2333334579999
Q ss_pred EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--
Q 028010 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (215)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-- 152 (215)
||||+|||+|+.++| ++|.+.+ .+++||+.+... .++++|++++.
T Consensus 90 LGIClG~QlLa~alG--------------G~V~~~~-------------~~e~G~~~v~i~------~~~~Lf~~l~~~~ 136 (536)
T PLN02347 90 LGICYGMQLIVQKLG--------------GEVKPGE-------------KQEYGRMEIRVV------CGSQLFGDLPSGE 136 (536)
T ss_pred EEECHHHHHHHHHcC--------------CEEEecC-------------CcccceEEEEEc------CCChhhhcCCCCc
Confidence 999999999999987 4555531 346788765421 36789999854
Q ss_pred --CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCCC
Q 028010 153 --DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTAD 208 (215)
Q Consensus 153 --~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~~ 208 (215)
.+|+.|++.+...|... .++|+|++| .+++++ ..++||+|||||++..
T Consensus 137 ~~~v~~~Hsd~V~~lP~g~-~vlA~s~~~-------~iaai~~~~~~i~GvQFHPE~~~t 188 (536)
T PLN02347 137 TQTVWMSHGDEAVKLPEGF-EVVAKSVQG-------AVVAIENRERRIYGLQYHPEVTHS 188 (536)
T ss_pred eEEEEEEEEEEeeeCCCCC-EEEEEeCCC-------cEEEEEECCCCEEEEEccCCCCcc
Confidence 47888998875555543 789999987 357765 5689999999999873
No 38
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.92 E-value=9e-26 Score=182.19 Aligned_cols=166 Identities=20% Similarity=0.290 Sum_probs=116.1
Q ss_pred EEEecCCChH-HHHHHHHHCCCeEEEECCCC-------CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 4 GVLALQGSFN-EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 4 ~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~-------~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
.|+++...+. ++.++|+++|+++++++... ++.++|++||+||..+..+ + ..+.+.++++.+.++|+|
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d-~---~~~~~~i~~~~~~~~Pil 76 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD-I---EGLIELIREARERKIPIL 76 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS-H---HHHHHHHHHHHHTTSEEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc-c---cccccccccccccceEEE
Confidence 3677755444 78899999999998887432 2678999999999776543 2 234678888888999999
Q ss_pred EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--
Q 028010 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (215)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~-- 153 (215)
|||+|||+|+.++|+ +|.+.+ +.++.||+..... . ..+++|.+.++.
T Consensus 77 GIC~G~Q~la~~~G~--------------~v~~~~------------~~~~~g~~~~~~~--~---~~~~~~~~~~~~~~ 125 (192)
T PF00117_consen 77 GICLGHQILAHALGG--------------KVVPSP------------EKPHHGGNIPISE--T---PEDPLFYGLPESFK 125 (192)
T ss_dssp EETHHHHHHHHHTTH--------------EEEEEE------------SEEEEEEEEEEEE--E---EEHGGGTTSTSEEE
T ss_pred EEeehhhhhHHhcCC--------------cccccc------------ccccccccccccc--c---cccccccccccccc
Confidence 999999999999973 444321 1456677532210 0 124788888665
Q ss_pred eEEEEEeeCCC---CccccCCcceeeecccCCCCCceEEEEeeCC-EEEEeeCCccCCCCc
Q 028010 154 VDVLADYPVPS---NKVLYSSSTVEIQEENAMPEKKVIVAVRQGN-LLGTAFHPELTADTR 210 (215)
Q Consensus 154 ~~~~Hs~~~~~---~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~-v~g~QFHPE~s~~~~ 210 (215)
++..|++.+.. .|... .++|+|+++ ...++++..++ +||+|||||++.+..
T Consensus 126 ~~~~H~~~v~~~~~~p~~~-~~la~s~~~-----~~~~~~~~~~~~i~g~QfHPE~~~~~~ 180 (192)
T PF00117_consen 126 AYQYHSDAVNPDDLLPEGF-EVLASSSDG-----CPIQAIRHKDNPIYGVQFHPEFSSSPG 180 (192)
T ss_dssp EEEEECEEEEEGHHHHTTE-EEEEEETTT-----TEEEEEEECTTSEEEESSBTTSTTSTT
T ss_pred cccccceeeeccccccccc-ccccccccc-----cccccccccccEEEEEecCCcCCCCCC
Confidence 45667777665 44432 789999652 13555555554 999999999998764
No 39
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.92 E-value=3.5e-25 Score=185.41 Aligned_cols=170 Identities=21% Similarity=0.186 Sum_probs=109.5
Q ss_pred CEEEEEecCCC----hHHHHHHHHHCCCe---EEEECC--C----CCCCCcCEEEEcCCCcch-------HHHHHhhC-C
Q 028010 1 MVVGVLALQGS----FNEHIAALKRLGVK---GVEIRK--P----DQLQNVSSLIIPGGESTT-------MARLAEYH-N 59 (215)
Q Consensus 1 m~v~il~~~G~----~~s~~~~l~~~G~~---v~~~~~--~----~~l~~~d~lil~GG~~~~-------~~~l~~~~-~ 59 (215)
+.|+||...-. -.++.+.|++.|.. +++++. . .+++++|+|||+||..+. .+|+.... .
T Consensus 2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~ 81 (242)
T PRK07567 2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAE 81 (242)
T ss_pred CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHH
Confidence 14888886432 13466778888864 444431 1 256789999999996432 33433211 1
Q ss_pred HHHHHHHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceee
Q 028010 60 LFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRG 139 (215)
Q Consensus 60 l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~ 139 (215)
+.++++.+++.++|+||||+|+|+|+.++| ++|.+ +. -+++||..+..+. .+
T Consensus 82 i~~~i~~~~~~~~PvLGIC~G~Qlla~a~G--------------G~V~~-~~------------g~e~G~~~v~l~~-~g 133 (242)
T PRK07567 82 LSGLLDEVVARDFPFLGACYGVGTLGHHQG--------------GVVDR-TY------------GEPVGAVTVSLTD-AG 133 (242)
T ss_pred HHHHHHHHHhcCCCEEEEchhHHHHHHHcC--------------CEEec-CC------------CCcCccEEEEECC-cc
Confidence 234555556899999999999999999997 35554 21 1356766554321 11
Q ss_pred eeeeCceeeecCCCeEEE--EEeeCCCCccccCCcceeeecccCCCCCceEEEEe-eCCEEEEeeCCccCCC
Q 028010 140 VFIRAPAVLDVGPDVDVL--ADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR-QGNLLGTAFHPELTAD 208 (215)
Q Consensus 140 ~~~~~pl~~~~~~~~~~~--Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~-~~~v~g~QFHPE~s~~ 208 (215)
..+|+|.+++..+... |++.+...|+. +.++|+|+.| .+++++ ++++||+|||||++.+
T Consensus 134 --~~~~l~~~~~~~~~~~~~H~d~V~~lp~~-~~vlA~s~~~-------~vqa~~~~~~~~gvQfHPE~~~~ 195 (242)
T PRK07567 134 --RADPLLAGLPDTFTAFVGHKEAVSALPPG-AVLLATSPTC-------PVQMFRVGENVYATQFHPELDAD 195 (242)
T ss_pred --CCChhhcCCCCceEEEeehhhhhhhCCCC-CEEEEeCCCC-------CEEEEEeCCCEEEEEeCCcCCHH
Confidence 2578998887766554 55555444443 3799999876 345555 5689999999999875
No 40
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.92 E-value=6.5e-25 Score=176.89 Aligned_cols=167 Identities=19% Similarity=0.100 Sum_probs=116.5
Q ss_pred EEEEEecCCC--hHHHHHHHHHCC---CeEEEECCC-----CCCCCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHc
Q 028010 2 VVGVLALQGS--FNEHIAALKRLG---VKGVEIRKP-----DQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKM 70 (215)
Q Consensus 2 ~v~il~~~G~--~~s~~~~l~~~G---~~v~~~~~~-----~~l~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~ 70 (215)
||+||..... .....+.|+++| +++++++.. .+++++|+||++||..+. .+...+...+.+.|+.+.++
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAA 80 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHC
Confidence 5788877554 356788999998 677776532 356789999999996544 22222324567889999999
Q ss_pred CCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec
Q 028010 71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV 150 (215)
Q Consensus 71 ~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~ 150 (215)
++|++|||+|+|+|+.++| +++.+++. .++.||..+..+. ....++++.++
T Consensus 81 ~~pilgiC~G~q~l~~~lG--------------G~v~~~~~------------~~~~g~~~v~~~~---~~~~~~l~~~~ 131 (188)
T cd01741 81 GKPVLGICLGHQLLARALG--------------GKVGRNPK------------GWEIGWFPVTLTE---AGKADPLFAGL 131 (188)
T ss_pred CCCEEEECccHHHHHHHhC--------------CEEecCCC------------cceeEEEEEEecc---ccccCchhhcC
Confidence 9999999999999999986 45555432 1355665554321 11245677777
Q ss_pred CC--CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCc
Q 028010 151 GP--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPE 204 (215)
Q Consensus 151 ~~--~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE 204 (215)
+. .++..|++.+...++. +.++|++++| .++++...+++||+|||||
T Consensus 132 ~~~~~v~~~H~~~v~~lp~~-~~~la~~~~~------~v~~~~~~~~~~g~QfHPE 180 (188)
T cd01741 132 PDEFPVFHWHGDTVVELPPG-AVLLASSEAC------PNQAFRYGDRALGLQFHPE 180 (188)
T ss_pred CCcceEEEEeccChhhCCCC-CEEeecCCCC------CcceEEecCCEEEEccCch
Confidence 55 4677888877655543 3789999886 3444444579999999999
No 41
>CHL00101 trpG anthranilate synthase component 2
Probab=99.92 E-value=2.9e-24 Score=173.78 Aligned_cols=159 Identities=15% Similarity=0.134 Sum_probs=111.3
Q ss_pred EEEEecCCChHH-HHHHHHHCCCeEEEECCCC----CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 3 v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~----~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
|.|+++.+.|.. +.+.|+++|+++.+++..+ ++ .++|+||+.||+.+..+ ..+...+.++++.++|+|
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~-----~~~~~~i~~~~~~~~PiL 76 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRD-----SGISLDVISSYAPYIPIL 76 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHH-----CcchHHHHHHhcCCCcEE
Confidence 899999999885 6789999999998877432 22 46899999999865432 122344555677899999
Q ss_pred EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--
Q 028010 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (215)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~-- 153 (215)
|||+|||+|+.++| ++|.+.+ .++.||..... . ..+++|.++++.
T Consensus 77 GIClG~Qlla~~~G--------------g~V~~~~-------------~~~~g~~~~~~---~---~~~~l~~~~~~~~~ 123 (190)
T CHL00101 77 GVCLGHQSIGYLFG--------------GKIIKAP-------------KPMHGKTSKIY---H---NHDDLFQGLPNPFT 123 (190)
T ss_pred EEchhHHHHHHHhC--------------CEEEECC-------------CcccCceeeEe---e---CCcHhhccCCCceE
Confidence 99999999999997 4666542 22345432211 1 356788888664
Q ss_pred eEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEee--CC-EEEEeeCCccCC
Q 028010 154 VDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GN-LLGTAFHPELTA 207 (215)
Q Consensus 154 ~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~-v~g~QFHPE~s~ 207 (215)
++..|++.+. ..+.. ..++|++++| .+++++. .+ +||+|||||++.
T Consensus 124 v~~~H~~~v~~~~lp~~-~~vla~s~~~-------~v~a~~~~~~~~i~gvQfHPE~~~ 174 (190)
T CHL00101 124 ATRYHSLIIDPLNLPSP-LEITAWTEDG-------LIMACRHKKYKMLRGIQFHPESLL 174 (190)
T ss_pred EEcchhheeecccCCCc-eEEEEEcCCC-------cEEEEEeCCCCCEEEEEeCCccCC
Confidence 4667877763 22332 3789999876 3455543 35 999999999973
No 42
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.92 E-value=4.4e-24 Score=173.43 Aligned_cols=158 Identities=19% Similarity=0.135 Sum_probs=109.7
Q ss_pred EEEEecCCChHH-HHHHHHHCCCeEEEECCCC----C--CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----Q--LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 3 v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~----~--l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
|.|++..++|.. +.+.|+++|.++.+++..+ + ..++|+||+.||+.+..+. ....+.++. .+.++|+|
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~----~~~~~~i~~-~~~~~PvL 76 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEA----GISMEVIRY-FAGKIPIF 76 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhC----CCchHHHHH-hcCCCCEE
Confidence 889999998885 7899999999999887542 1 2368999999998765431 123455554 35789999
Q ss_pred EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCe-
Q 028010 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV- 154 (215)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~- 154 (215)
|||+|+|+|+.++| ++|.+.+ .++.|+.... . ....|+|.++++.+
T Consensus 77 GIClG~Qlla~~lG--------------g~V~~~~-------------~~~~G~~~~i----~--~~~~~lf~~~~~~~~ 123 (195)
T PRK07649 77 GVCLGHQSIAQVFG--------------GEVVRAE-------------RLMHGKTSLM----H--HDGKTIFSDIPNPFT 123 (195)
T ss_pred EEcHHHHHHHHHcC--------------CEEeeCC-------------CcccCCeEEE----E--ECCChhhcCCCCCCE
Confidence 99999999999997 4555532 1233543211 1 02568999997654
Q ss_pred -EEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccC
Q 028010 155 -DVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELT 206 (215)
Q Consensus 155 -~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s 206 (215)
+..|++.+. ..|+. .+++|+|++| .+++++.+ ++||+|||||..
T Consensus 124 v~~~H~~~v~~~~lp~~-~~~~a~s~~~-------~v~a~~~~~~~i~gvQFHPE~~ 172 (195)
T PRK07649 124 ATRYHSLIVKKETLPDC-LEVTSWTEEG-------EIMAIRHKTLPIEGVQFHPESI 172 (195)
T ss_pred EEEechheEecccCCCC-eEEEEEcCCC-------cEEEEEECCCCEEEEEECCCCC
Confidence 556666652 23332 3789998876 45666654 599999999975
No 43
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.91 E-value=2e-23 Score=166.08 Aligned_cols=159 Identities=21% Similarity=0.268 Sum_probs=113.0
Q ss_pred CEEEEEecCCChH-HHHHHHHHCCCeEEEECCCC----CC--CCcCEEEEcCCCcchHHHHHhhCC-HHHHHHHHHHcCC
Q 028010 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHN-LFPALREFVKMGK 72 (215)
Q Consensus 1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~----~l--~~~d~lil~GG~~~~~~~l~~~~~-l~~~i~~~~~~~~ 72 (215)
|+|.+++..+++. .+++.|+++|.++.++++.+ .+ .++|+|||+-|+....+ .+ ..+.|+++ ...+
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d-----~G~~~~~i~~~-~~~~ 75 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKD-----AGISLELIRRF-AGRI 75 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHH-----cchHHHHHHHh-cCCC
Confidence 5899999999887 47899999999998887641 12 35899999666543321 22 35777777 5679
Q ss_pred cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC
Q 028010 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (215)
Q Consensus 73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~ 152 (215)
|+||||+|+|.|++++| ++|.+. +.|..|-.+.... ....+|+++++
T Consensus 76 PiLGVCLGHQai~~~fG--------------g~V~~a-------------~~~~HGK~s~i~h------~g~~iF~glp~ 122 (191)
T COG0512 76 PILGVCLGHQAIAEAFG--------------GKVVRA-------------KEPMHGKTSIITH------DGSGLFAGLPN 122 (191)
T ss_pred CEEEECccHHHHHHHhC--------------CEEEec-------------CCCcCCeeeeeec------CCcccccCCCC
Confidence 99999999999999998 355542 1334453221110 24689999987
Q ss_pred Ce--EEEEEeeCCC--CccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCcc
Q 028010 153 DV--DVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPEL 205 (215)
Q Consensus 153 ~~--~~~Hs~~~~~--~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~ 205 (215)
.| ..+||..+.. .|... .+.|+++.+ ..++++++. +++|+|||||.
T Consensus 123 ~f~v~RYHSLvv~~~~lP~~l-~vtA~~~d~------~~IMai~h~~~pi~gvQFHPES 174 (191)
T COG0512 123 PFTVTRYHSLVVDPETLPEEL-EVTAESEDG------GVIMAVRHKKLPIYGVQFHPES 174 (191)
T ss_pred CCEEEeeEEEEecCCCCCCce-EEEEEeCCC------CEEEEEeeCCCCEEEEecCCcc
Confidence 65 5589987754 45443 678888753 478998755 79999999996
No 44
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.91 E-value=1.6e-23 Score=169.29 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=109.2
Q ss_pred EEEEEecCCChH-HHHHHHHHCCCeEEEECCCC----CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~----~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi 74 (215)
.|.|+++.+.|. ++.+.|+++|+++++++... ++ .++|+||++||+.+..+ . ....+++++ +..++|+
T Consensus 1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d-~---~~~~~~l~~-~~~~~Pv 75 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAE-A---GISLELIRE-FAGKVPI 75 (189)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHH-c---chHHHHHHH-hcCCCCE
Confidence 189999999887 57899999999998886532 12 24899999998765432 1 122456654 4678999
Q ss_pred EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC-
Q 028010 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD- 153 (215)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~- 153 (215)
||||+|||+|+.++| +++.+.+ .++.||..... ...++++.+++..
T Consensus 76 LGIClG~Qlla~alG--------------g~v~~~~-------------~~~~g~~~~v~------~~~~~l~~~~~~~~ 122 (189)
T PRK05670 76 LGVCLGHQAIGEAFG--------------GKVVRAK-------------EIMHGKTSPIE------HDGSGIFAGLPNPF 122 (189)
T ss_pred EEECHHHHHHHHHhC--------------CEEEecC-------------CcccCceeEEE------eCCCchhccCCCCc
Confidence 999999999999997 3454432 12345532111 0256788887654
Q ss_pred -eEEEEEeeCCC--CccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccC
Q 028010 154 -VDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELT 206 (215)
Q Consensus 154 -~~~~Hs~~~~~--~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s 206 (215)
++..|++.+.. .+.. .+++|++++| .+++++. .++||+|||||++
T Consensus 123 ~v~~~H~~~v~~~~lp~~-~~~la~s~~~-------~i~a~~~~~~~~~gvQfHPE~~ 172 (189)
T PRK05670 123 TVTRYHSLVVDRESLPDC-LEVTAWTDDG-------EIMGVRHKELPIYGVQFHPESI 172 (189)
T ss_pred EEEcchhheeccccCCCc-eEEEEEeCCC-------cEEEEEECCCCEEEEeeCCCcC
Confidence 56677777642 3433 3789998765 5666664 4799999999996
No 45
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.91 E-value=5.3e-24 Score=200.74 Aligned_cols=159 Identities=14% Similarity=0.163 Sum_probs=117.3
Q ss_pred CEEEEEecCCC-hHHHHHHHHHCCCeEEEECCC--CCC---CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010 1 MVVGVLALQGS-FNEHIAALKRLGVKGVEIRKP--DQL---QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 1 m~v~il~~~G~-~~s~~~~l~~~G~~v~~~~~~--~~l---~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi 74 (215)
+||+|+++... ..++.++|+++|+++.+++.. +++ .++|+||+.||+.+..+ .+..+.|+++++.++|+
T Consensus 517 ~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILsgGPGsp~d-----~~~~~~I~~~~~~~iPv 591 (717)
T TIGR01815 517 RRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPAD-----FDVAGTIDAALARGLPV 591 (717)
T ss_pred CEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEcCCCCCchh-----cccHHHHHHHHHCCCCE
Confidence 48999998764 457889999999999888653 222 46899999888765432 23467888888899999
Q ss_pred EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCC-CCCCcceeeeeeeCceeeecCC-
Q 028010 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQ-EGGPETFRGVFIRAPAVLDVGP- 152 (215)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~-~~~~~~~~~~~~~~pl~~~~~~- 152 (215)
||||+|||+|+.++| ++|.+. +.|++||. .+... ..+++|.+++.
T Consensus 592 LGICLG~QlLa~a~G--------------G~V~~~-------------~~p~~G~~~~V~~~------~~~~Lf~~lp~~ 638 (717)
T TIGR01815 592 FGVCLGLQGMVEAFG--------------GALDVL-------------PEPVHGKASRIRVL------GPDALFAGLPER 638 (717)
T ss_pred EEECHHHHHHhhhhC--------------CEEEEC-------------CCCeeCcceEEEEC------CCChhhhcCCCC
Confidence 999999999999986 455553 35788853 33321 25689999865
Q ss_pred -CeEEEEEeeC--CCCccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCcc
Q 028010 153 -DVDVLADYPV--PSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPEL 205 (215)
Q Consensus 153 -~~~~~Hs~~~--~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~ 205 (215)
.++++|||.+ ...|.. ..++|+++++ .+++++. .++||+|||||+
T Consensus 639 ~~v~~~HS~~~~~~~LP~~-~~vlA~s~d~-------~v~Ai~~~~~~i~GVQFHPEs 688 (717)
T TIGR01815 639 LTVGRYHSLFARRDRLPAE-LTVTAESADG-------LIMAIEHRRLPLAAVQFHPES 688 (717)
T ss_pred CEEEEECCCCcccccCCCC-eEEEEEeCCC-------cEEEEEECCCCEEEEEeCCee
Confidence 4677888765 223333 3788988875 5777774 579999999999
No 46
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.91 E-value=2e-23 Score=168.53 Aligned_cols=161 Identities=18% Similarity=0.160 Sum_probs=111.0
Q ss_pred EEEEecCCChHH-HHHHHHHCCCeEEEECCCC----CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 3 v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~----~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
|.+++..++|.. +.+.|+++|+++.+++..+ ++ .++|+||++||+.+..+. ....+.++. .+.++|+|
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~----~~~~~~~~~-~~~~~PiL 76 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEA----GISLDVIRH-YAGRLPIL 76 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHC----CccHHHHHH-hcCCCCEE
Confidence 889999998884 7889999999999887542 22 258999999998765322 122455655 56789999
Q ss_pred EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCC-CCCcceeeeeeeCceeeecCC--
Q 028010 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE-GGPETFRGVFIRAPAVLDVGP-- 152 (215)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~-~~~~~~~~~~~~~pl~~~~~~-- 152 (215)
|||+|+|+|+.++| +++.+.+ .++.|+.. +.. ...++|++++.
T Consensus 77 GIClG~Q~la~a~G--------------g~v~~~~-------------~~~~g~~~~v~~-------~~~~l~~~~~~~~ 122 (187)
T PRK08007 77 GVCLGHQAMAQAFG--------------GKVVRAA-------------KVMHGKTSPITH-------NGEGVFRGLANPL 122 (187)
T ss_pred EECHHHHHHHHHcC--------------CEEEeCC-------------CcccCCceEEEE-------CCCCcccCCCCCc
Confidence 99999999999997 4565532 22334321 111 24568888755
Q ss_pred CeEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCcc-CCCCc
Q 028010 153 DVDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPEL-TADTR 210 (215)
Q Consensus 153 ~~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~-s~~~~ 210 (215)
.++.+|++.+. ..|+.. .++|++++| .+++++ ..+++|+|||||+ ..+.|
T Consensus 123 ~v~~~H~~~v~~~~lp~~~-~v~a~~~~~-------~i~a~~~~~~~i~GvQfHPE~~~t~~G 177 (187)
T PRK08007 123 TVTRYHSLVVEPDSLPACF-EVTAWSETR-------EIMGIRHRQWDLEGVQFHPESILSEQG 177 (187)
T ss_pred EEEEcchhEEccCCCCCCe-EEEEEeCCC-------cEEEEEeCCCCEEEEEeCCcccCCcch
Confidence 46677888763 333332 688988876 456665 4479999999998 43433
No 47
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.90 E-value=4.3e-24 Score=195.75 Aligned_cols=161 Identities=19% Similarity=0.274 Sum_probs=115.2
Q ss_pred EEEEEecCCChH-HHHHHHHHCCCeEEEECCC---CCCCCc--CEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP---DQLQNV--SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~---~~l~~~--d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
+|+||+|...|. .+.++|+++|+..+++... ++++++ |+||++||+.+.++.-. ..+ .+...+.++|+|
T Consensus 5 ~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~~~~~l~~~~~dgIIlsGGp~sv~~~~~--p~~---~~~i~~~~~PvL 79 (511)
T PRK00074 5 KILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEGA--PRA---DPEIFELGVPVL 79 (511)
T ss_pred EEEEEECCCCcHHHHHHHHHHCCCeEEEEECCCCHHHHhccCCCEEEECCCCcccccCCC--ccc---cHHHHhCCCCEE
Confidence 799999988777 4678999999988777432 344444 99999999775543111 112 234456799999
Q ss_pred EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC--
Q 028010 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-- 153 (215)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~-- 153 (215)
|||+|||+|+.++| ++|.+.+ .++.||..+... .++++|.+++..
T Consensus 80 GIC~G~QlLa~~lG--------------G~V~~~~-------------~~e~G~~~i~i~------~~~~Lf~~l~~~~~ 126 (511)
T PRK00074 80 GICYGMQLMAHQLG--------------GKVERAG-------------KREYGRAELEVD------NDSPLFKGLPEEQD 126 (511)
T ss_pred EECHHHHHHHHHhC--------------CeEEecC-------------CcccceEEEEEc------CCChhhhcCCCceE
Confidence 99999999999987 3454431 246687665421 256789888654
Q ss_pred eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCCC
Q 028010 154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTAD 208 (215)
Q Consensus 154 ~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~~ 208 (215)
++..|++.+...|+.. .++|+|+.+ .+++++ ++++||+|||||++..
T Consensus 127 v~~~H~d~V~~lp~g~-~vlA~s~~~-------~v~ai~~~~~~i~GvQFHPE~~~t 175 (511)
T PRK00074 127 VWMSHGDKVTELPEGF-KVIASTENC-------PIAAIANEERKFYGVQFHPEVTHT 175 (511)
T ss_pred EEEECCeEEEecCCCc-EEEEEeCCC-------CEEEEEeCCCCEEEEeCCCCcCCc
Confidence 6778888776555543 789999875 456665 5689999999999874
No 48
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.90 E-value=5.6e-23 Score=166.04 Aligned_cols=160 Identities=21% Similarity=0.201 Sum_probs=108.6
Q ss_pred EEEEEecCCChH-HHHHHHHHCCCeEEEECCC----CCCC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP----DQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~----~~l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi 74 (215)
.|.|++..++|. ++.+.|+++|+++.++... +++. ++|+|||+||+.+..+. . ...+.++++ +.++|+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~-~---~~~~~i~~~-~~~~Pv 75 (188)
T TIGR00566 1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEA-G---ISLEAIRHF-AGKLPI 75 (188)
T ss_pred CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhc-c---hhHHHHHHh-ccCCCE
Confidence 188999999988 5789999999998887642 2232 47899999998654321 1 115667766 679999
Q ss_pred EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC--
Q 028010 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-- 152 (215)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-- 152 (215)
||||+|||+|+.++| ++|.+.+ +.++.+|..+.. ..++++.+++.
T Consensus 76 LGIC~G~Qll~~~~G--------------G~v~~~~------------~~~~g~~~~v~~-------~~~~~~~~l~~~~ 122 (188)
T TIGR00566 76 LGVCLGHQAMGQAFG--------------GDVVRAN------------TVMHGKTSEIEH-------NGAGIFRGLFNPL 122 (188)
T ss_pred EEECHHHHHHHHHcC--------------CEEeeCC------------CccccceEEEEE-------CCCccccCCCCCc
Confidence 999999999999997 4555432 122333443321 24456777744
Q ss_pred CeEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccC
Q 028010 153 DVDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELT 206 (215)
Q Consensus 153 ~~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s 206 (215)
.++..|++.+. ..+... .++|+++.+ ..+++++.. ++||+|||||..
T Consensus 123 ~v~~~H~~~v~~~~l~~~~-~v~a~s~~~------~~v~a~~~~~~~i~gvQfHPE~~ 173 (188)
T TIGR00566 123 TATRYHSLVVEPETLPTCF-PVTAWEEEN------IEIMAIRHRDLPLEGVQFHPESI 173 (188)
T ss_pred EEEEcccceEecccCCCce-EEEEEcCCC------CEEEEEEeCCCCEEEEEeCCCcc
Confidence 45778888763 333332 678888764 256666543 799999999984
No 49
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.90 E-value=7.9e-23 Score=167.53 Aligned_cols=168 Identities=18% Similarity=0.237 Sum_probs=103.9
Q ss_pred CEEEEEecCCChH-HHHHHHHHCCCeEEEECCCC---CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~---~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi 74 (215)
.||+++++.+.+. ++.+.|+++|+++++++... ++ .++|+||+.||+.+..+.- . ..+.++.+. .++|+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~~-~---~~~li~~~~-~~~Pi 76 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAG-N---MMALIDRTL-GQIPL 76 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHhh-H---HHHHHHHHh-CCCCE
Confidence 1899999877666 68899999999999887532 23 2579999999887654321 1 134555443 58999
Q ss_pred EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecC---
Q 028010 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG--- 151 (215)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~--- 151 (215)
||||+|+|+|+.++|+.. ...+...+.... .....-| .++|+|.+++
T Consensus 77 LGIClG~Qlla~alGG~V----~~~~~~~G~~~~-------------i~~~~~~-------------~~~~l~~~~~~~~ 126 (208)
T PRK05637 77 LGICLGFQALLEHHGGKV----EPCGPVHGTTDN-------------MILTDAG-------------VQSPVFAGLATDV 126 (208)
T ss_pred EEEcHHHHHHHHHcCCee----ccCCcccceEEE-------------eEECCCC-------------CCCcccCCCCccc
Confidence 999999999999997421 101100000000 0000001 1233444332
Q ss_pred ---------C--CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCCC
Q 028010 152 ---------P--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTAD 208 (215)
Q Consensus 152 ---------~--~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~~ 208 (215)
. .++.+|++.+...|+.. .++|+|+.+ .-..+++++ ..++||+|||||....
T Consensus 127 ~~~~~~~~g~~~~V~~~H~~~v~~lp~~~-~vlA~s~~~----~~~v~~a~~~~~~~~~GvQfHPE~~~T 191 (208)
T PRK05637 127 EPDHPEIPGRKVPIARYHSLGCVVAPDGM-ESLGTCSSE----IGPVIMAAETTDGKAIGLQFHPESVLS 191 (208)
T ss_pred ccccccccCCceEEEEechhhhhcCCCCe-EEEEEecCC----CCCEEEEEEECCCCEEEEEeCCccCcC
Confidence 2 35667887776555543 789987642 013556644 5689999999998764
No 50
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.89 E-value=2.2e-22 Score=163.16 Aligned_cols=165 Identities=17% Similarity=0.132 Sum_probs=109.8
Q ss_pred EEEEEecCCChH-HHHHHHHHCCCeEEEECCC-CCC-----CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP-DQL-----QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~-~~l-----~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi 74 (215)
.|.+++..++|. .+.+.|+++|+++.+++.. .++ .++|+||+.||+.+..+. ....++++. ++.++|+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~----~~~~~~i~~-~~~~~Pi 75 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEA----GISLQAIEH-FAGKLPI 75 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHC----cchHHHHHH-hcCCCCE
Confidence 188999999888 4789999999999888753 121 247899999997654322 122456654 5789999
Q ss_pred EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC-
Q 028010 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD- 153 (215)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~- 153 (215)
||||+|+|+|+.++| ++|.+.+ .++.||.... . ...+++|.+++..
T Consensus 76 LGIClG~Qlia~a~G--------------g~v~~~~-------------~~~~G~~~~~----~--~~~~~l~~~~~~~~ 122 (193)
T PRK08857 76 LGVCLGHQAIAQVFG--------------GQVVRAR-------------QVMHGKTSPI----R--HTGRSVFKGLNNPL 122 (193)
T ss_pred EEEcHHHHHHHHHhC--------------CEEEeCC-------------CceeCceEEE----E--ECCCcccccCCCcc
Confidence 999999999999997 3555432 2344663211 0 1245688888654
Q ss_pred -eEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccCC
Q 028010 154 -VDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTA 207 (215)
Q Consensus 154 -~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s~ 207 (215)
++..|++.+. ..+.. ..++|++++.+ .....+++++.. ++||+|||||+..
T Consensus 123 ~v~~~H~~~v~~~~lp~~-~~v~a~s~~~~--~~~~~i~~~~~~~~pi~gvQfHPE~~~ 178 (193)
T PRK08857 123 TVTRYHSLVVKNDTLPEC-FELTAWTELED--GSMDEIMGFQHKTLPIEAVQFHPESIK 178 (193)
T ss_pred EEEEccEEEEEcCCCCCC-eEEEEEecCcC--CCcceEEEEEeCCCCEEEEeeCCCcCC
Confidence 5667777653 23332 26888886420 012356666544 8999999999973
No 51
>PRK13566 anthranilate synthase; Provisional
Probab=99.89 E-value=2.8e-22 Score=189.33 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=116.5
Q ss_pred CEEEEEecCCChH-HHHHHHHHCCCeEEEECCCC-----CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~-----~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi 74 (215)
|||+|+++...+. .+.+.|+++|+++++++... +..++|+||+.||+.+..+ .++.++|+.++++++|+
T Consensus 527 ~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d-----~~~~~lI~~a~~~~iPI 601 (720)
T PRK13566 527 KRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSD-----FDCKATIDAALARNLPI 601 (720)
T ss_pred CEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhh-----CCcHHHHHHHHHCCCcE
Confidence 6899999987544 67899999999999987642 2246899999888755321 24568899999999999
Q ss_pred EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccC-CCCCCcceeeeeeeCceeeecCCC
Q 028010 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS-QEGGPETFRGVFIRAPAVLDVGPD 153 (215)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw-~~~~~~~~~~~~~~~pl~~~~~~~ 153 (215)
||||+|||+|+.++| +++.+. +.|+.|+ +.+..+ ..+++|.+++..
T Consensus 602 LGIClG~QlLa~alG--------------G~V~~~-------------~~~~~G~~~~V~v~------~~~~Lf~~lp~~ 648 (720)
T PRK13566 602 FGVCLGLQAIVEAFG--------------GELGQL-------------AYPMHGKPSRIRVR------GPGRLFSGLPEE 648 (720)
T ss_pred EEEehhHHHHHHHcC--------------CEEEEC-------------CCCccCCceEEEEC------CCCchhhcCCCC
Confidence 999999999999997 345443 2344454 333321 245788888664
Q ss_pred --eEEEEEeeCCC--CccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccC
Q 028010 154 --VDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELT 206 (215)
Q Consensus 154 --~~~~Hs~~~~~--~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s 206 (215)
++.+|++++.. .++.. .++|++++| .+++++++ ++||+|||||+.
T Consensus 649 ~~v~~~Hs~~v~~~~Lp~~~-~vlA~s~dg-------~V~ai~~~~~pi~GVQFHPE~i 699 (720)
T PRK13566 649 FTVGRYHSLFADPETLPDEL-LVTAETEDG-------VIMAIEHKTLPVAAVQFHPESI 699 (720)
T ss_pred CEEEEecceeEeeccCCCce-EEEEEeCCC-------cEEEEEECCCCEEEEeccCeeC
Confidence 57788876532 33332 789999875 67887754 899999999994
No 52
>PLN02335 anthranilate synthase
Probab=99.88 E-value=7.7e-22 Score=163.27 Aligned_cols=166 Identities=19% Similarity=0.188 Sum_probs=108.1
Q ss_pred CEEEEEecCCChH-HHHHHHHHCCCeEEEECCCC-C---C--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCc
Q 028010 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKPD-Q---L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (215)
Q Consensus 1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~-~---l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~P 73 (215)
+||.|+++.+.|. .+.+.|+++|+++.+++... + + .++|+||+.||+.+..+. . ...+.+++ ...++|
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~-~---~~~~~~~~-~~~~~P 93 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDS-G---ISLQTVLE-LGPLVP 93 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhc-c---chHHHHHH-hCCCCC
Confidence 3799999988777 57799999999999987531 2 2 257999999998765321 1 11344433 456799
Q ss_pred EEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC
Q 028010 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD 153 (215)
Q Consensus 74 ilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~ 153 (215)
+||||+|+|+|+.++| +++.+.+.+ ..+.+|..+.... . .++++|.+++..
T Consensus 94 iLGIClG~QlLa~alG--------------g~v~~~~~~-----------~~~G~~~~v~~~~-~---~~~~Lf~~l~~~ 144 (222)
T PLN02335 94 LFGVCMGLQCIGEAFG--------------GKIVRSPFG-----------VMHGKSSPVHYDE-K---GEEGLFSGLPNP 144 (222)
T ss_pred EEEecHHHHHHHHHhC--------------CEEEeCCCc-----------cccCceeeeEECC-C---CCChhhhCCCCC
Confidence 9999999999999987 344443211 1122343332211 0 245899998664
Q ss_pred --eEEEEEeeCCC--CccccCCcceeeecccCCCCCceEEEEeeC---CEEEEeeCCccCC
Q 028010 154 --VDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQG---NLLGTAFHPELTA 207 (215)
Q Consensus 154 --~~~~Hs~~~~~--~~~~~~~~la~s~~~~~~~~~~~~~~~~~~---~v~g~QFHPE~s~ 207 (215)
++..|++.+.. .+...-.++|+++.+ .+++++.. ++||+|||||+..
T Consensus 145 ~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~-------~v~ai~~~~~~~i~GvQfHPE~~~ 198 (222)
T PLN02335 145 FTAGRYHSLVIEKDTFPSDELEVTAWTEDG-------LIMAARHRKYKHIQGVQFHPESII 198 (222)
T ss_pred CEEEechhheEecccCCCCceEEEEEcCCC-------CEEEEEecCCCCEEEEEeCCCCCC
Confidence 56667776642 232211577887765 46776644 4999999999974
No 53
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.87 E-value=4e-21 Score=153.89 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=100.3
Q ss_pred EEEEecCCChHHHHHHHHHCCCeEEEECCCCC-----CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQ-----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 3 v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~-----l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
|+|++|...| .+.++|+++|+++++++...+ ..++|+||++||+.+... . ....+.++++.++++|+|||
T Consensus 1 i~i~d~g~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~-~---~~~~~~~~~~~~~~~PvlGI 75 (178)
T cd01744 1 VVVIDFGVKH-NILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPAL-L---DEAIKTVRKLLGKKIPIFGI 75 (178)
T ss_pred CEEEecCcHH-HHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChhH-h---HHHHHHHHHHHhCCCCEEEE
Confidence 6899997776 589999999999988764322 246999999999754322 1 23467888999999999999
Q ss_pred ehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC---e
Q 028010 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD---V 154 (215)
Q Consensus 78 C~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~---~ 154 (215)
|+|+|+|+.++|+ ++.+.+ .++.|. .+++....... +
T Consensus 76 C~G~Q~l~~~~Gg--------------~v~~~~-------------~~~~g~-------------~~~v~~~~~~~~~~v 115 (178)
T cd01744 76 CLGHQLLALALGA--------------KTYKMK-------------FGHRGS-------------NHPVKDLITGRVYIT 115 (178)
T ss_pred CHHHHHHHHHcCC--------------ceecCC-------------CCCCCC-------------ceeeEEcCCCCcEEE
Confidence 9999999999973 333211 111121 11221111111 2
Q ss_pred EEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccCCC
Q 028010 155 DVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTAD 208 (215)
Q Consensus 155 ~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s~~ 208 (215)
...|++.+. ..+... .++|++... ..+++++. .++||+|||||++..
T Consensus 116 ~~~H~~~v~~~~lp~~~-~v~a~s~~~------~~i~a~~~~~~~i~GvQfHPE~~~~ 166 (178)
T cd01744 116 SQNHGYAVDPDSLPGGL-EVTHVNLND------GTVEGIRHKDLPVFSVQFHPEASPG 166 (178)
T ss_pred EcCceEEEcccccCCce-EEEEEECCC------CcEEEEEECCCCeEEEeeCCCCCCC
Confidence 345777663 233332 678876321 24666654 479999999999763
No 54
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.86 E-value=1.1e-21 Score=166.89 Aligned_cols=158 Identities=18% Similarity=0.260 Sum_probs=95.0
Q ss_pred HHHHHHHHCCCeEEEECCC---CC----CCCcCEEEEcCCCcch--HHHHHhhCCHHHHHHHHHHc---C--CcEEEEeh
Q 028010 14 EHIAALKRLGVKGVEIRKP---DQ----LQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKM---G--KPVWGTCA 79 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~---~~----l~~~d~lil~GG~~~~--~~~l~~~~~l~~~i~~~~~~---~--~PilGIC~ 79 (215)
++++++++.|+.++.+..+ +. ++.+|+|++|||..+. .+++... ..+++.+++. | +|+||||+
T Consensus 24 ~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~---~~l~~~a~~~~~~g~~~Pv~GiCl 100 (273)
T cd01747 24 SYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTA---KIIYNLALERNDAGDYFPVWGTCL 100 (273)
T ss_pred HHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHH---HHHHHHHHHhhhcCCCCcEEEEcH
Confidence 5789999999997766533 22 5678999999986432 2233222 3344555443 3 89999999
Q ss_pred HHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccC-CCCCCcceeeeeeeCceeeecC-------
Q 028010 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS-QEGGPETFRGVFIRAPAVLDVG------- 151 (215)
Q Consensus 80 G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw-~~~~~~~~~~~~~~~pl~~~~~------- 151 (215)
|+|+|+.++++.. ..+ . ..+.+|+ .++.. .....++++|++++
T Consensus 101 G~QlL~~~~gg~~----~~~---------~-------------~~~~~~~~~~l~~---t~~~~~s~lF~~~p~~l~~~l 151 (273)
T cd01747 101 GFELLTYLTSGET----LLL---------E-------------ATEATNSALPLNF---TEDALQSRLFKRFPPDLLKSL 151 (273)
T ss_pred HHHHHHHHhCCCc----ccc---------C-------------CCccccceEEEEE---ccccccChhhhcCCHHHHHHH
Confidence 9999999987420 000 0 0001111 11110 00012345555553
Q ss_pred ---CCeEEEEEeeCCCCc--c------ccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccCC
Q 028010 152 ---PDVDVLADYPVPSNK--V------LYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTA 207 (215)
Q Consensus 152 ---~~~~~~Hs~~~~~~~--~------~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s~ 207 (215)
+.+|++|+|++.+.. . .. .+++++++. ++..+++.++.. |++|+|||||++.
T Consensus 152 ~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~-~vla~~~d~---~g~~fis~ie~~~~pi~gvQFHPEks~ 216 (273)
T cd01747 152 ATEPLTMNNHRYGISPENFTENGLLSDFF-NVLTTNDDW---NGVEFISTVEAYKYPIYGVQWHPEKNA 216 (273)
T ss_pred hcccHHHhhcccccCHhhcccccccccce-EEEEEEecC---CCceEEEEEEecCCceEEEecCCCccc
Confidence 247889999884321 1 11 467777651 125688999877 8999999999984
No 55
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.85 E-value=5.3e-21 Score=158.79 Aligned_cols=87 Identities=29% Similarity=0.504 Sum_probs=68.5
Q ss_pred CEEEEEecCCChH--HHHHHHHHCCCeEEEECCC-CCCCCcCEEEEcCCCcchH----HHHHhhCCHHHHHHHHHHcCCc
Q 028010 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRKP-DQLQNVSSLIIPGGESTTM----ARLAEYHNLFPALREFVKMGKP 73 (215)
Q Consensus 1 m~v~il~~~G~~~--s~~~~l~~~G~~v~~~~~~-~~l~~~d~lil~GG~~~~~----~~l~~~~~l~~~i~~~~~~~~P 73 (215)
|||+||.++|.+. ++.++|+++|+++.++... ..++++|+||+|||.+... ..+.....+.++|+++.+.++|
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~~l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~p 80 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVP 80 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCCCCCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCE
Confidence 8999999998753 6889999999998877543 3478899999999864210 1122223457889999999999
Q ss_pred EEEEehHHHHHHHh
Q 028010 74 VWGTCAGLIFLANK 87 (215)
Q Consensus 74 ilGIC~G~QlLa~~ 87 (215)
++|||.|+|+|+++
T Consensus 81 vlgIC~G~QlLa~~ 94 (227)
T TIGR01737 81 VLGICNGFQILVEA 94 (227)
T ss_pred EEEECHHHHHHHHc
Confidence 99999999999986
No 56
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.83 E-value=4.4e-20 Score=169.67 Aligned_cols=161 Identities=17% Similarity=0.144 Sum_probs=105.5
Q ss_pred CEEEEEecCCChHH-HHHHHHHCCCeEEEECCCC-------CCC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHc
Q 028010 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD-------QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKM 70 (215)
Q Consensus 1 m~v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~-------~l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~ 70 (215)
|||.|+++.++|.. +.+.|+++|+++.++++.. ++. ++|+|||.||+.+..+. +....+.+.+..
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~-----~~~~~i~~~~~~ 76 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEA-----GCMPELLTRLRG 76 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhC-----CCCHHHHHHHhc
Confidence 49999999999985 6789999999988886421 122 46799999998765321 112233344456
Q ss_pred CCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec
Q 028010 71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV 150 (215)
Q Consensus 71 ~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~ 150 (215)
++|+||||+|+|+|+.++|+ +|.+.+ .+..|+.... . ....++|.++
T Consensus 77 ~iPILGIClG~QlLa~a~GG--------------~V~~~~-------------~~~~G~~~~i----~--~~~~~lf~~~ 123 (531)
T PRK09522 77 KLPIIGICLGHQAIVEAYGG--------------YVGQAG-------------EILHGKASSI----E--HDGQAMFAGL 123 (531)
T ss_pred CCCEEEEcHHHHHHHHhcCC--------------EEEeCC-------------ceeeeeEEEE----e--ecCCccccCC
Confidence 89999999999999999973 444321 1122331100 0 0244678887
Q ss_pred CCC--eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccCCC
Q 028010 151 GPD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTAD 208 (215)
Q Consensus 151 ~~~--~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s~~ 208 (215)
+.. ++.+|++.+...|... +++|+++. .+++++. .++||+|||||....
T Consensus 124 ~~~~~v~~~Hs~~v~~lP~~l-~vlA~sd~--------~v~ai~~~~~~i~GVQFHPEs~~T 176 (531)
T PRK09522 124 TNPLPVARYHSLVGSNIPAGL-TINAHFNG--------MVMAVRHDADRVCGFQFHPESILT 176 (531)
T ss_pred CCCcEEEEehheecccCCCCc-EEEEecCC--------CEEEEEECCCCEEEEEecCccccC
Confidence 654 4557777765455433 78887653 3455543 689999999997543
No 57
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.83 E-value=5.2e-20 Score=152.04 Aligned_cols=99 Identities=32% Similarity=0.528 Sum_probs=77.4
Q ss_pred CEEEEEecCCChH--HHHHHHH-HCCCeEEEEC-CCCCCCCcCEEEEcCCCcchH----HHHHhhCCHHHHHHHHHHcCC
Q 028010 1 MVVGVLALQGSFN--EHIAALK-RLGVKGVEIR-KPDQLQNVSSLIIPGGESTTM----ARLAEYHNLFPALREFVKMGK 72 (215)
Q Consensus 1 m~v~il~~~G~~~--s~~~~l~-~~G~~v~~~~-~~~~l~~~d~lil~GG~~~~~----~~l~~~~~l~~~i~~~~~~~~ 72 (215)
|||+||.++|.+. +..++|+ .+|+++..+. ...+++++|+||+|||++... ..+.....+.++|+++.++++
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~~~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~ 80 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGK 80 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCcCCCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCC
Confidence 8999999999774 5789999 8999987774 345788999999999865311 112222346788999999999
Q ss_pred cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccC
Q 028010 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFF 111 (215)
Q Consensus 73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~ 111 (215)
|++|||.|+|+|+++ |++++++.+|..
T Consensus 81 ~ilgIC~G~qlLa~~------------GLL~g~l~~n~~ 107 (219)
T PRK03619 81 PVLGICNGFQILTEA------------GLLPGALTRNAS 107 (219)
T ss_pred EEEEECHHHHHHHHc------------CCCCCeEEEcCC
Confidence 999999999999985 566678887753
No 58
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.82 E-value=4.1e-19 Score=156.10 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=101.5
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEECCCC---CCC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~---~l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
+||+|+++ |.-.++.++|+++|++++++.... ++. ++|+|+|+||+.+... .. ...+.++++++.++|+|
T Consensus 178 ~~I~viD~-G~k~nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPgdp~~-~~---~~~~~i~~~~~~~~Pil 252 (360)
T PRK12564 178 YKVVAIDF-GVKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPAA-LD---YAIEMIRELLEKKIPIF 252 (360)
T ss_pred CEEEEEeC-CcHHHHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCCChHH-HH---HHHHHHHHHHHcCCeEE
Confidence 37999999 566689999999999999887532 222 5899999999754322 21 23578888888899999
Q ss_pred EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCe-
Q 028010 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV- 154 (215)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~- 154 (215)
|||+|+|+|+.++|+ ++.+.+ ..+.|. .+|+...-..+.
T Consensus 253 GIClG~QlLa~a~Gg--------------~v~kl~-------------~gh~G~-------------~~pv~~~~~~~~~ 292 (360)
T PRK12564 253 GICLGHQLLALALGA--------------KTYKMK-------------FGHRGA-------------NHPVKDLETGKVE 292 (360)
T ss_pred EECHHHHHHHHHhCC--------------cEeccC-------------CCccCC-------------ceeeEECCCCcEE
Confidence 999999999999973 333321 112232 122211111122
Q ss_pred --EEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccCC
Q 028010 155 --DVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTA 207 (215)
Q Consensus 155 --~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s~ 207 (215)
...|+|.+. ..+... .+++++.. ...+++++. .++||+|||||...
T Consensus 293 its~~H~~~V~~~~lp~~l-~v~a~~~~------Dg~iegi~~~~~pi~gVQfHPE~~~ 344 (360)
T PRK12564 293 ITSQNHGFAVDEDSLPANL-EVTHVNLN------DGTVEGLRHKDLPAFSVQYHPEASP 344 (360)
T ss_pred EEecCcccEEcccccCCce-EEEEEeCC------CCcEEEEEECCCCEEEEEeCCcCCC
Confidence 335877763 233322 56666632 125677765 37999999999875
No 59
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.82 E-value=5.3e-20 Score=148.79 Aligned_cols=131 Identities=24% Similarity=0.344 Sum_probs=89.4
Q ss_pred HHHHHHHHCCCeEEEECCCC-------CCCCcCEEEEcCCCcchHH--------HH-----HhhCCHHHHHHHHHHcCCc
Q 028010 14 EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMA--------RL-----AEYHNLFPALREFVKMGKP 73 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~-------~l~~~d~lil~GG~~~~~~--------~l-----~~~~~l~~~i~~~~~~~~P 73 (215)
++.++|+.+|++++++.... .+.++|+||+|||.+.... ++ .......+.++.+++.++|
T Consensus 23 ~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~P 102 (189)
T cd01745 23 YYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKP 102 (189)
T ss_pred HHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCC
Confidence 57899999999988887542 2467999999998643211 11 1001125778888889999
Q ss_pred EEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC
Q 028010 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD 153 (215)
Q Consensus 74 ilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~ 153 (215)
+||||+|+|+|+.++|+ ++.+. + .
T Consensus 103 ilgiC~G~Q~l~~~~Gg--------------~v~~~-----------------------------------~-------~ 126 (189)
T cd01745 103 ILGICRGMQLLNVALGG--------------TLYQD-----------------------------------I-------R 126 (189)
T ss_pred EEEEcchHHHHHHHhCC--------------eEEcC-----------------------------------C-------c
Confidence 99999999999999973 33321 0 2
Q ss_pred eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeC---CEEEEeeCCccCCC
Q 028010 154 VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQG---NLLGTAFHPELTAD 208 (215)
Q Consensus 154 ~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~---~v~g~QFHPE~s~~ 208 (215)
+...|++.+...++.. +++|+++.+ .+++++.+ +++|+|||||.+..
T Consensus 127 v~~~H~~~v~~~~~~~-~vla~~~d~-------~vea~~~~~~~~~~gvQfHPE~~~~ 176 (189)
T cd01745 127 VNSLHHQAIKRLADGL-RVEARAPDG-------VIEAIESPDRPFVLGVQWHPEWLAD 176 (189)
T ss_pred eechHHHHHhhcCCCC-EEEEECCCC-------cEEEEEeCCCCeEEEEecCCCcCcc
Confidence 2335666554333322 677877655 56666543 79999999999775
No 60
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.81 E-value=5.8e-19 Score=154.93 Aligned_cols=83 Identities=17% Similarity=0.324 Sum_probs=65.0
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEECCCC---CCC--CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~---~l~--~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG 76 (215)
||+|+++ |.-.++.++|+++|++++++.... ++. .+|+|||+||+.+.. .+. ...+.++++++ ++|+||
T Consensus 175 ~i~viD~-G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGPgdp~-~~~---~~i~~i~~~~~-~~PILG 248 (358)
T TIGR01368 175 RVVVIDF-GVKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPA-AVE---PAIETIRKLLE-KIPIFG 248 (358)
T ss_pred EEEEEeC-CcHHHHHHHHHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCCCCHH-HHH---HHHHHHHHHHc-CCCEEE
Confidence 7999999 666789999999999998886433 222 359999999976542 221 23577888876 999999
Q ss_pred EehHHHHHHHhhcc
Q 028010 77 TCAGLIFLANKAVG 90 (215)
Q Consensus 77 IC~G~QlLa~~~~~ 90 (215)
||+|+|+|+.++|+
T Consensus 249 IClG~QlLa~a~Gg 262 (358)
T TIGR01368 249 ICLGHQLLALAFGA 262 (358)
T ss_pred ECHHHHHHHHHhCC
Confidence 99999999999974
No 61
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.81 E-value=5.8e-19 Score=156.45 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=100.2
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEECCCCC---C--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQ---L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~---l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG 76 (215)
||+++++ |+-.++.+.|+++|++++++....+ + .++|+|||+||+.+.. ... ...+.+++.+ .++|+||
T Consensus 242 ~IvviD~-G~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGPGDP~-~~~---~~ie~ik~l~-~~iPIlG 315 (415)
T PLN02771 242 HVIAYDF-GIKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGPGDPS-AVP---YAVETVKELL-GKVPVFG 315 (415)
T ss_pred EEEEECC-ChHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCCCChh-Hhh---HHHHHHHHHH-hCCCEEE
Confidence 6788888 7788899999999999999875432 2 3689999999976542 222 2356666665 4799999
Q ss_pred EehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeE-
Q 028010 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD- 155 (215)
Q Consensus 77 IC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~- 155 (215)
||+|+|+|+.++| +++.+.++ .+.|- .+|+.......++
T Consensus 316 ICLGhQlLa~AlG--------------Gkv~K~~~-------------Gh~G~-------------n~pV~~~~~~~v~i 355 (415)
T PLN02771 316 ICMGHQLLGQALG--------------GKTFKMKF-------------GHHGG-------------NHPVRNNRTGRVEI 355 (415)
T ss_pred EcHHHHHHHHhcC--------------CeEEECCC-------------Ccccc-------------eEEEEECCCCCEEE
Confidence 9999999999997 45555432 22231 3343322223444
Q ss_pred --EEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccCC
Q 028010 156 --VLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTA 207 (215)
Q Consensus 156 --~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s~ 207 (215)
..|+|.+. ..+... .+++.+.. ...+++++. .+++|+|||||.+.
T Consensus 356 tsqnHg~aVd~~sLp~~~-~vt~~nln------Dgtvegi~~~~~pi~gVQFHPEa~p 406 (415)
T PLN02771 356 SAQNHNYAVDPASLPEGV-EVTHVNLN------DGSCAGLAFPALNVMSLQYHPEASP 406 (415)
T ss_pred EecCHHHhhccccCCCce-EEEEEeCC------CCcEEEEEECCCCEEEEEcCCCCCC
Confidence 35777662 233322 56665522 124556553 48999999999865
No 62
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.81 E-value=2.1e-19 Score=165.83 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=107.9
Q ss_pred EEEEecCCChH-HHHHHHHHCCCe-EEEECCCC----CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010 3 VGVLALQGSFN-EHIAALKRLGVK-GVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 3 v~il~~~G~~~-s~~~~l~~~G~~-v~~~~~~~----~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pi 74 (215)
|.|++..++|. .+.+.|+++|.+ +.++.+.+ ++ .++|+||++||+.+..+. . ...+.++. +..++|+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~-~---~~~~li~~-~~~~~Pv 76 (534)
T PRK14607 2 IILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEA-G---ISVEVIRH-FSGKVPI 76 (534)
T ss_pred EEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhC-C---ccHHHHHH-hhcCCCE
Confidence 88899888887 578899999996 76664322 22 257999999998765322 1 12455655 4678999
Q ss_pred EEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC-
Q 028010 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD- 153 (215)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~- 153 (215)
||||+|||+|+.++| +++.+.+ .++.|+..... ....++|.++++.
T Consensus 77 LGIClG~QlLa~a~G--------------g~V~~~~-------------~~~~G~~~~v~------~~~~~lf~~~~~~~ 123 (534)
T PRK14607 77 LGVCLGHQAIGYAFG--------------GKIVHAK-------------RILHGKTSPID------HNGKGLFRGIPNPT 123 (534)
T ss_pred EEEcHHHHHHHHHcC--------------CeEecCC-------------ccccCCceeEE------ECCCcchhcCCCCc
Confidence 999999999999987 3444421 22445532211 1245688888654
Q ss_pred -eEEEEEeeCC--CCccccCCcceeeecccCCCCCceEEEEeeC--CEEEEeeCCccCC
Q 028010 154 -VDVLADYPVP--SNKVLYSSSTVEIQEENAMPEKKVIVAVRQG--NLLGTAFHPELTA 207 (215)
Q Consensus 154 -~~~~Hs~~~~--~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~--~v~g~QFHPE~s~ 207 (215)
++.+|++.+. ..+.. ..++|++++| .+++++.+ ++||+|||||...
T Consensus 124 ~v~~~Hs~~v~~~~lp~~-~~vlA~s~d~-------~i~a~~~~~~pi~GvQFHPE~~~ 174 (534)
T PRK14607 124 VATRYHSLVVEEASLPEC-LEVTAKSDDG-------EIMGIRHKEHPIFGVQFHPESIL 174 (534)
T ss_pred EEeeccchheecccCCCC-eEEEEEcCCC-------CEEEEEECCCCEEEEEeCCCCCC
Confidence 5667887763 23333 2788998876 46666653 6999999999864
No 63
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.80 E-value=7.6e-19 Score=167.00 Aligned_cols=164 Identities=14% Similarity=0.167 Sum_probs=104.2
Q ss_pred CEEEEEecCCChH-HHHHHHHHC-C--CeEEEECCC-------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHH
Q 028010 1 MVVGVLALQGSFN-EHIAALKRL-G--VKGVEIRKP-------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK 69 (215)
Q Consensus 1 m~v~il~~~G~~~-s~~~~l~~~-G--~~v~~~~~~-------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~ 69 (215)
|||+++++.++|. .+++.|++. | +++.+++.. +++..+|+|||+||+..... ... ...+++..+
T Consensus 6 ~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~-~~~----~~i~~~i~~ 80 (742)
T TIGR01823 6 LHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNN-AQD----MGIISELWE 80 (742)
T ss_pred ceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccc-hhh----hHHHHHHHH
Confidence 6899999998887 577888886 3 566666542 13457999999988764321 111 123333333
Q ss_pred ----cCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCc
Q 028010 70 ----MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAP 145 (215)
Q Consensus 70 ----~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~p 145 (215)
.++|+||||+|+|+|+.++| +++.+++ .++.|+.... . ....+
T Consensus 81 ~~~~~~iPvLGIClG~QlLa~a~G--------------G~v~~~~-------------~~~hG~~~~v----~--~~~~~ 127 (742)
T TIGR01823 81 LANLDEVPVLGICLGFQSLCLAQG--------------ADISRLP-------------TPKHGQVYEM----H--TNDAA 127 (742)
T ss_pred hcccCCCcEEEEchhhHHHHhhcC--------------CEEEECC-------------CCCcCeEEEE----E--ECCcc
Confidence 25999999999999999987 3455432 3455652110 1 02456
Q ss_pred eeeecCC-CeEEEEEeeCCCCcccc--CCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccCCC
Q 028010 146 AVLDVGP-DVDVLADYPVPSNKVLY--SSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELTAD 208 (215)
Q Consensus 146 l~~~~~~-~~~~~Hs~~~~~~~~~~--~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s~~ 208 (215)
+|.+++. .++.+|++.+....... +.+++.++++ ..+++++ ..++||+|||||....
T Consensus 128 lf~gl~~~~v~~~Hs~~v~~~~~~~l~~~~~a~~~~~------~~i~ai~h~~~pi~GVQFHPE~~~s 189 (742)
T TIGR01823 128 IFCGLFSVKSTRYHSLYANPEGIDTLLPLCLTEDEEG------IILMSAQTKKKPWFGVQYHPESCCS 189 (742)
T ss_pred ccCCCCCCceeEEEEEEccCCCCCcceEEEEEEcCCC------CeEEEEEEcCCceEEEEeCcccCCC
Confidence 7888754 56788998874422211 1345555543 3566665 5589999999998543
No 64
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.80 E-value=2.3e-18 Score=150.93 Aligned_cols=83 Identities=16% Similarity=0.326 Sum_probs=65.4
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEECCCC---CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~---~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
++|+++++ |...++.++|+++|+++.++.... ++ .++|+||++||+.+..+.. ...+.+++++++ +|+|
T Consensus 168 ~~V~viD~-G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGPgdp~~~~----~~~~~i~~~~~~-~Pvl 241 (354)
T PRK12838 168 KHVALIDF-GYKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDPKELQ----PYLPEIKKLISS-YPIL 241 (354)
T ss_pred CEEEEECC-CHHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEEcCCCCChHHhH----HHHHHHHHHhcC-CCEE
Confidence 37899999 677889999999999998886432 23 2689999999986543221 235678887766 9999
Q ss_pred EEehHHHHHHHhhc
Q 028010 76 GTCAGLIFLANKAV 89 (215)
Q Consensus 76 GIC~G~QlLa~~~~ 89 (215)
|||+|+|+|+.++|
T Consensus 242 GIClG~QlLa~a~G 255 (354)
T PRK12838 242 GICLGHQLIALALG 255 (354)
T ss_pred EECHHHHHHHHHhC
Confidence 99999999999997
No 65
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.78 E-value=9.1e-18 Score=148.25 Aligned_cols=84 Identities=15% Similarity=0.321 Sum_probs=65.1
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEECCCC---CC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~---~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
+||+|+++ |.-.++.+.|+++|+++.++.... ++ .++|+|+++||+.+... .. .+.+.++++++.++|+|
T Consensus 193 ~~I~viD~-g~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilSgGPg~p~~-~~---~~i~~i~~~~~~~~Pil 267 (382)
T CHL00197 193 LKIIVIDF-GVKYNILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGDPSA-IH---YGIKTVKKLLKYNIPIF 267 (382)
T ss_pred CEEEEEEC-CcHHHHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEcCCCCChhH-HH---HHHHHHHHHHhCCCCEE
Confidence 48999999 544569999999999999986532 22 26899999998765321 11 23567777777799999
Q ss_pred EEehHHHHHHHhhc
Q 028010 76 GTCAGLIFLANKAV 89 (215)
Q Consensus 76 GIC~G~QlLa~~~~ 89 (215)
|||+|+|+|+.++|
T Consensus 268 GIClGhQlLa~a~G 281 (382)
T CHL00197 268 GICMGHQILSLALE 281 (382)
T ss_pred EEcHHHHHHHHHhC
Confidence 99999999999997
No 66
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.78 E-value=4.9e-18 Score=143.45 Aligned_cols=85 Identities=33% Similarity=0.590 Sum_probs=66.0
Q ss_pred CEEEEEecCCCh--HHHHHHHHHCCCeEEEECCC------CCCCCcCEEEEcCCCcch--H-------HHHHhhCCHHHH
Q 028010 1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTT--M-------ARLAEYHNLFPA 63 (215)
Q Consensus 1 m~v~il~~~G~~--~s~~~~l~~~G~~v~~~~~~------~~l~~~d~lil~GG~~~~--~-------~~l~~~~~l~~~ 63 (215)
|||+||.++|.. .+..++|+++|+++.++... .+++++|+|++|||++.. . ..+. ..+.+.
T Consensus 4 ~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~--~~l~~~ 81 (261)
T PRK01175 4 IRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLK--AVLRKD 81 (261)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHH--HHHHHH
Confidence 599999999964 46789999999998776531 346789999999996421 1 1221 124478
Q ss_pred HHHHHHcCCcEEEEehHHHHHHHh
Q 028010 64 LREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 64 i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
|++++++++|+||||.|+|+|+++
T Consensus 82 Ik~f~~~gkpVLGICnG~QlLa~~ 105 (261)
T PRK01175 82 IEEFIDEGYPIIGICNGFQVLVEL 105 (261)
T ss_pred HHHHHHCCCeEEEECHHHHHHHHC
Confidence 899999999999999999999985
No 67
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=99.78 E-value=3e-18 Score=139.54 Aligned_cols=113 Identities=19% Similarity=0.355 Sum_probs=92.3
Q ss_pred cCCChHHHHHHHHHCCCeEEEECCC--CCCCCcCEEEEcCCCcc-hHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHH
Q 028010 8 LQGSFNEHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGEST-TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL 84 (215)
Q Consensus 8 ~~G~~~s~~~~l~~~G~~v~~~~~~--~~l~~~d~lil~GG~~~-~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlL 84 (215)
|.-.|.+..++|+++|++++.+++. +++.++|+||||||.+. .+++|.++.++.+.|++++++|+|++|||.|+|+|
T Consensus 9 F~f~y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL 88 (198)
T cd03130 9 FNFYYPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYL 88 (198)
T ss_pred cccccHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHH
Confidence 5556889999999999999999874 66777999999999754 36677655578899999999999999999999999
Q ss_pred HHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCC
Q 028010 85 ANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGG 133 (215)
Q Consensus 85 a~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~ 133 (215)
++.+.+......++||++|+++...+ +. ++||+.+.
T Consensus 89 ~~~~~d~~g~~~~glGll~~~~~~~~------------~~-~~g~~~~~ 124 (198)
T cd03130 89 GESLDDEEGQSYPMAGVLPGDARMTK------------RL-GLGYREAE 124 (198)
T ss_pred HHHhhccCCCEeccccccceeeEEcC------------CC-cccCEEEE
Confidence 99997532235789999999998742 23 88997654
No 68
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.77 E-value=3.6e-18 Score=138.83 Aligned_cols=99 Identities=30% Similarity=0.500 Sum_probs=78.9
Q ss_pred CEEEEEecCCChH--HHHHHHHHCCCeEEEECCCC-CCC-CcCEEEEcCCCcch----HHHHHhhCCHHHHHHHHHHcCC
Q 028010 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRKPD-QLQ-NVSSLIIPGGESTT----MARLAEYHNLFPALREFVKMGK 72 (215)
Q Consensus 1 m~v~il~~~G~~~--s~~~~l~~~G~~v~~~~~~~-~l~-~~d~lil~GG~~~~----~~~l~~~~~l~~~i~~~~~~~~ 72 (215)
|||+||.|+|... +...+++++|.+...+.-.+ .+. ++|+|++|||++.. ..++.+...+.+.++++++.|+
T Consensus 3 ~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~ 82 (231)
T COG0047 3 PKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGK 82 (231)
T ss_pred ceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccCCCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCC
Confidence 6999999999766 57889999999988776433 345 69999999998631 2234444567889999999999
Q ss_pred cEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccC
Q 028010 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFF 111 (215)
Q Consensus 73 PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~ 111 (215)
|+||||.|+|+|.++ |++++..++|..
T Consensus 83 ~vLGICNGfQiL~e~------------gLlPGal~~N~s 109 (231)
T COG0047 83 PVLGICNGFQILSEA------------GLLPGALTRNES 109 (231)
T ss_pred eEEEEcchhHHHHHc------------CcCCcceecCCC
Confidence 999999999999954 778888888753
No 69
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.76 E-value=7e-18 Score=161.66 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=88.5
Q ss_pred CEEEEEecCCChHH-HHHHHHHC-CCeEEEECCCC----C-------CCCcCEEEEcCCCcch--HHHHHhhCCHHHHHH
Q 028010 1 MVVGVLALQGSFNE-HIAALKRL-GVKGVEIRKPD----Q-------LQNVSSLIIPGGESTT--MARLAEYHNLFPALR 65 (215)
Q Consensus 1 m~v~il~~~G~~~s-~~~~l~~~-G~~v~~~~~~~----~-------l~~~d~lil~GG~~~~--~~~l~~~~~l~~~i~ 65 (215)
|||.+++..++|.. ++..|+++ |.+++++++.+ + +..+|+|||.||+... ...+. -..+.|+
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~G---i~~~~i~ 158 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIG---ICLRLLL 158 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHH---HHHHHHH
Confidence 78999999998884 67889888 99988876542 1 2468999998887532 11221 1134444
Q ss_pred HHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCc
Q 028010 66 EFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAP 145 (215)
Q Consensus 66 ~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~p 145 (215)
++ .++||||||+|||+|+.++| ++|.+. +.|..|+... +. .....
T Consensus 159 ~~--~~iPILGICLGhQ~i~~~~G--------------g~V~~~-------------~~~~HG~~s~----I~--h~~~~ 203 (918)
T PLN02889 159 EC--RDIPILGVCLGHQALGYVHG--------------ARIVHA-------------PEPVHGRLSE----IE--HNGCR 203 (918)
T ss_pred Hh--CCCcEEEEcHHHHHHHHhcC--------------ceEEeC-------------CCceeeeeee----Ee--ecCch
Confidence 42 47999999999999999997 345442 2344554211 00 02456
Q ss_pred eeeecCC------CeEEEEEeeCC--CCccccCCcceeeec
Q 028010 146 AVLDVGP------DVDVLADYPVP--SNKVLYSSSTVEIQE 178 (215)
Q Consensus 146 l~~~~~~------~~~~~Hs~~~~--~~~~~~~~~la~s~~ 178 (215)
+|++++. .+..+||..+. ..|... .++|+++.
T Consensus 204 lF~glp~~~~~~f~v~RYHSL~v~~~~lP~~L-~~~A~t~~ 243 (918)
T PLN02889 204 LFDDIPSGRNSGFKVVRYHSLVIDAESLPKEL-VPIAWTSS 243 (918)
T ss_pred hhcCCCcCCCCCceEEeCCCcccccCCCCCce-EEEEEECC
Confidence 8888854 34456887663 223322 56777654
No 70
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.76 E-value=1.3e-18 Score=138.70 Aligned_cols=173 Identities=16% Similarity=0.114 Sum_probs=112.1
Q ss_pred EEEEEec----------CCChHHH-HHHHHHCCCeEEE---ECC----CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHH
Q 028010 2 VVGVLAL----------QGSFNEH-IAALKRLGVKGVE---IRK----PDQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (215)
Q Consensus 2 ~v~il~~----------~G~~~s~-~~~l~~~G~~v~~---~~~----~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~ 63 (215)
|++++.. .|+|..+ +..|.+-|..... ++. .+|+++||++||+|+..++.+...|...|...
T Consensus 6 r~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~ 85 (245)
T KOG3179|consen 6 RIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSDADWIKKLCSF 85 (245)
T ss_pred eEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccccchHHHHHHHH
Confidence 6777653 3555544 4566677765433 332 25788999999999865544344444567888
Q ss_pred HHHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeee
Q 028010 64 LREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIR 143 (215)
Q Consensus 64 i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~ 143 (215)
+++.....++|+|||+|||++|++.|. +|.|++. -|.++..+++.-.... ..
T Consensus 86 ~kkld~mkkkvlGICFGHQiiara~Gg--------------~Vgra~K------------G~~~~lg~itivk~~~--~~ 137 (245)
T KOG3179|consen 86 VKKLDFMKKKVLGICFGHQIIARAKGG--------------KVGRAPK------------GPDLGLGSITIVKDAE--KP 137 (245)
T ss_pred HHHHHhhccceEEEeccHHHHHHhhCC--------------ccccCCC------------CCcccccceEEEEecc--cc
Confidence 888888899999999999999999874 3444432 2233332222100000 01
Q ss_pred CceeeecCC--CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCCC
Q 028010 144 APAVLDVGP--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT 209 (215)
Q Consensus 144 ~pl~~~~~~--~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~~ 209 (215)
..+|..++. +.--.|++.+...|+. +.++|+|+.| .+..+.+.++++.+|-|||.+.+.
T Consensus 138 ~~yFG~~~~~l~IikcHqDevle~PE~-a~llasSe~c------eve~fs~~~~~l~fQGHPEyn~ei 198 (245)
T KOG3179|consen 138 EKYFGEIPKSLNIIKCHQDEVLELPEG-AELLASSEKC------EVEMFSIEDHLLCFQGHPEYNKEI 198 (245)
T ss_pred hhhcccchhhhhHHhhcccceecCCch-hhhhcccccc------ceEEEEecceEEEecCCchhhHHH
Confidence 112322222 2344799888766664 4899999998 577888888999999999998654
No 71
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.75 E-value=3.1e-18 Score=144.45 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=92.4
Q ss_pred HHHHHHHHCCCeEEEECCC----CC----CCCcCEEEEcCCCcch----H------HHHHhh--CCHHHHHHHHHHcCCc
Q 028010 14 EHIAALKRLGVKGVEIRKP----DQ----LQNVSSLIIPGGESTT----M------ARLAEY--HNLFPALREFVKMGKP 73 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~----~~----l~~~d~lil~GG~~~~----~------~~l~~~--~~l~~~i~~~~~~~~P 73 (215)
.+.++++++|....++... +. ++.+|+||++||..+. + .+.... .-..++|+.++++++|
T Consensus 30 ~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~P 109 (254)
T PRK11366 30 KYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIP 109 (254)
T ss_pred HHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCC
Confidence 4678888888766555532 11 2569999999984321 1 000000 1224788888999999
Q ss_pred EEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCC-Ccceeee--eecccC--cccCCCCCCcceeeeeeeCceee
Q 028010 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG-SQIQSFE--AELSVP--ALASQEGGPETFRGVFIRAPAVL 148 (215)
Q Consensus 74 ilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~-~~~~~~~--~~~~~p--~~Gw~~~~~~~~~~~~~~~pl~~ 148 (215)
+||||+|+|+|+.++|+ ++.+.... ....... ...+.+ ...++.+.. ..+.++.
T Consensus 110 ILGICrG~Qllnva~GG--------------tl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~-------~~~s~l~ 168 (254)
T PRK11366 110 IFAICRGLQELVVATGG--------------SLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQV-------EEGGLLS 168 (254)
T ss_pred EEEECHhHHHHHHHhCC--------------eEeecccccccccccccCCccccccccCCceEEEE-------CCCCcHH
Confidence 99999999999999974 22221000 0000000 000000 001111111 2333444
Q ss_pred ec-C--CCeEE--EEEeeCCCCccccCCcceeeecccCCCCCceEEEEeeC-C--EEEEeeCCccCCC
Q 028010 149 DV-G--PDVDV--LADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQG-N--LLGTAFHPELTAD 208 (215)
Q Consensus 149 ~~-~--~~~~~--~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~~-~--v~g~QFHPE~s~~ 208 (215)
.+ + +.+.+ +|+..+...++.. .++|+++.| .+++++.. + ++|+|||||...+
T Consensus 169 ~i~~~~~~~~Vns~H~q~V~~l~~gl-~v~A~s~dg-------~ieAie~~~~~~~~GVQwHPE~~~~ 228 (254)
T PRK11366 169 ALLPECSNFWVNSLHGQGAKVVSPRL-RVEARSPDG-------LVEAVSVINHPFALGVQWHPEWNSS 228 (254)
T ss_pred HhcCCCceEEeehHHHHHHhhcccce-EEEEEcCCC-------cEEEEEeCCCCCEEEEEeCCCcCCC
Confidence 44 2 23443 3554555455443 789998876 67777643 3 7999999998764
No 72
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.74 E-value=5e-17 Score=139.79 Aligned_cols=155 Identities=17% Similarity=0.265 Sum_probs=103.2
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEECCC---CCC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~---~~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG 76 (215)
+|+++++ |--.++.+.|.++|++++++... +++ .+.|+|+|+-|+++. ..+. ...+.|++.++..+|++|
T Consensus 181 ~Vv~iD~-GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP-~~~~---~~i~~ik~l~~~~iPifG 255 (368)
T COG0505 181 HVVVIDF-GVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDP-APLD---YAIETIKELLGTKIPIFG 255 (368)
T ss_pred EEEEEEc-CccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCCh-hHHH---HHHHHHHHHhccCCCeEE
Confidence 6888888 77778999999999999999754 333 478999999987754 2232 236789999988889999
Q ss_pred EehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCCeEE
Q 028010 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDV 156 (215)
Q Consensus 77 IC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~ 156 (215)
||+|+|||+.++|. +..|..|| |.|- ++|..+-...+++.
T Consensus 256 ICLGHQllalA~Ga--------------~T~KmkFG-------------HrG~-------------NhPV~dl~tgrv~I 295 (368)
T COG0505 256 ICLGHQLLALALGA--------------KTYKMKFG-------------HRGA-------------NHPVKDLDTGRVYI 295 (368)
T ss_pred EcHHHHHHHHhcCC--------------ceeecccC-------------CCCC-------------CcCcccccCCeEEE
Confidence 99999999999984 34443332 4453 34444333456655
Q ss_pred E---EEeeCCCCccc-cCCcceeeecccCCCCCceEEEEee--CCEEEEeeCCccCC
Q 028010 157 L---ADYPVPSNKVL-YSSSTVEIQEENAMPEKKVIVAVRQ--GNLLGTAFHPELTA 207 (215)
Q Consensus 157 ~---Hs~~~~~~~~~-~~~~la~s~~~~~~~~~~~~~~~~~--~~v~g~QFHPE~s~ 207 (215)
. |.|.+...... ...+.-.+-. ...+..++. .+++.+|||||.+.
T Consensus 296 TSQNHGyaVd~~s~~~~~~vth~nln------DgTvEGi~h~~~P~fSVQ~HPEAsP 346 (368)
T COG0505 296 TSQNHGYAVDEDSLVETLKVTHVNLN------DGTVEGIRHKDLPAFSVQYHPEASP 346 (368)
T ss_pred EecCCceecChhhcCCCceeEEEeCC------CCCccceecCCCceEEEccCCCCCC
Confidence 3 77776533110 0012222221 123455543 47999999999875
No 73
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.73 E-value=3.7e-17 Score=140.22 Aligned_cols=165 Identities=16% Similarity=0.099 Sum_probs=100.6
Q ss_pred CEEEEEecCCChHHHHHH-HHHCC-----CeEEEECCC-------------------CCC--CCcCEEEEcCCCcc--hH
Q 028010 1 MVVGVLALQGSFNEHIAA-LKRLG-----VKGVEIRKP-------------------DQL--QNVSSLIIPGGEST--TM 51 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~-l~~~G-----~~v~~~~~~-------------------~~l--~~~d~lil~GG~~~--~~ 51 (215)
+||+||++.-+-....+- ++.++ +++..+... +++ .++||+||+|++-. ..
T Consensus 36 l~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~f 115 (302)
T PRK05368 36 LKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLPF 115 (302)
T ss_pred ccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCccC
Confidence 489999997766654433 33333 334444321 122 47999999998643 22
Q ss_pred HHHH-h--hCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhccCC--CCCccccceeeeEEEeccCCCcceeeeeecccCc
Q 028010 52 ARLA-E--YHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQK--LGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPA 126 (215)
Q Consensus 52 ~~l~-~--~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~~~--~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~ 126 (215)
+... | ...+.++++ +..+|+||||+|+|+++.++++.. ..+.++.|+...++
T Consensus 116 edv~YW~El~~i~~w~~---~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~-------------------- 172 (302)
T PRK05368 116 EDVDYWDELKEILDWAK---THVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRV-------------------- 172 (302)
T ss_pred CCCchHHHHHHHHHHHH---HcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEE--------------------
Confidence 2211 1 122334444 368999999999999999997521 11112233221111
Q ss_pred ccCCCCCCcceeeeeeeCceeeecCCCeEEEEEeeCCC------CccccCCcceeeecccCCCCCceEEEEe-eCCEEEE
Q 028010 127 LASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPS------NKVLYSSSTVEIQEENAMPEKKVIVAVR-QGNLLGT 199 (215)
Q Consensus 127 ~Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~~~------~~~~~~~~la~s~~~~~~~~~~~~~~~~-~~~v~g~ 199 (215)
. . ..+||+.+++..|+.-||..... .++ .+.+||+|+.+ .+.++.. +++++++
T Consensus 173 ------~----~---~~~pL~~g~~d~F~~phSr~~~V~~~~i~~~~-~l~vLA~S~~~------gv~~~~~~~~r~~~v 232 (302)
T PRK05368 173 ------L----D---PHHPLLRGFDDSFLVPHSRYTEVREEDIRAAT-GLEILAESEEA------GVYLFASKDKREVFV 232 (302)
T ss_pred ------c----C---CCChhhcCCCCccccceeehhhccHHHhccCC-CCEEEecCCCC------CeEEEEeCCCCEEEE
Confidence 0 0 25689999988888888864422 233 23789999877 3444444 5579999
Q ss_pred eeCCccCCC
Q 028010 200 AFHPELTAD 208 (215)
Q Consensus 200 QFHPE~s~~ 208 (215)
|+|||.+.+
T Consensus 233 QgHPEYd~~ 241 (302)
T PRK05368 233 TGHPEYDAD 241 (302)
T ss_pred ECCCCCCHH
Confidence 999999865
No 74
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.70 E-value=3.5e-17 Score=135.06 Aligned_cols=160 Identities=22% Similarity=0.341 Sum_probs=85.2
Q ss_pred HHHHHHHHCCCeEEEECCCC-------CCCCcCEEEEcCCCcch------------HHHHHhhCCH--HHHHHHHHHcCC
Q 028010 14 EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTT------------MARLAEYHNL--FPALREFVKMGK 72 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~-------~l~~~d~lil~GG~~~~------------~~~l~~~~~l--~~~i~~~~~~~~ 72 (215)
+++++++.+|..+..+.... -++.+|+|++|||..+. .......++. ..+++.+.++++
T Consensus 28 ~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~ 107 (217)
T PF07722_consen 28 SYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGK 107 (217)
T ss_dssp HHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT-
T ss_pred HHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCC
Confidence 68999999999988886542 14689999999986211 0111111111 356777778899
Q ss_pred cEEEEehHHHHHHHhhccCCCCCccc-cceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec-
Q 028010 73 PVWGTCAGLIFLANKAVGQKLGGQEL-VGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV- 150 (215)
Q Consensus 73 PilGIC~G~QlLa~~~~~~~~~~~~~-lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~- 150 (215)
|+||||.|||+|..++|+......+. .+..+..... ....++.+. ...+.++..+
T Consensus 108 PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~----------------~~~~~h~v~-------i~~~s~l~~~~ 164 (217)
T PF07722_consen 108 PILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHP----------------QDFPSHPVR-------IVPGSLLAKIL 164 (217)
T ss_dssp -EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-----------------TS--EEEE-------EETTSTCCCTS
T ss_pred CEEEEcHHHHHHHHHhCCCceeecccCcCcccccccc----------------cccccccce-------eccCchHHHHh
Confidence 99999999999999987531111110 1111110000 011111111 1233344444
Q ss_pred C-C--CeEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe---eC-CEEEEeeCCc
Q 028010 151 G-P--DVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR---QG-NLLGTAFHPE 204 (215)
Q Consensus 151 ~-~--~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~---~~-~v~g~QFHPE 204 (215)
+ . .+..+|.+.+....+.. .++|.+.++ .+.+++ +. +++|+|||||
T Consensus 165 ~~~~~~vns~Hhq~v~~l~~~l-~v~A~s~Dg-------~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 165 GSEEIEVNSFHHQAVKPLGEGL-RVTARSPDG-------VIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp HHCTEEEEEEECEEECCHHCCE-EEEEEECTS-------SEEEEEECCESS-EEEESS-CC
T ss_pred CcCcceeecchhhhhhccCCCc-eEEEEecCC-------cEEEEEEcCCCCCEEEEEeCCC
Confidence 2 2 35667777776655444 678888865 456654 33 6999999999
No 75
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=99.69 E-value=2.7e-16 Score=127.61 Aligned_cols=105 Identities=26% Similarity=0.431 Sum_probs=85.9
Q ss_pred EEEEec--CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcch--HHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010 3 VGVLAL--QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWGTC 78 (215)
Q Consensus 3 v~il~~--~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~--~~~l~~~~~l~~~i~~~~~~~~PilGIC 78 (215)
|+|+.+ .||+.++.+++++.|+++++++..+++.++|+||||||.... +.++. +..+.+.|++++++|+|+||||
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~~~~~d~lilpGg~~~~~~~~~~~-~~~~~~~i~~~~~~g~pvlgiC 79 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPEGLGDADLIILPGSKDTIQDLAWLR-KRGLAEAIKNYARAGGPVLGIC 79 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCCEEEECCCcchHHHHHHHH-HcCHHHHHHHHHHCCCcEEEEC
Confidence 466676 579999999999999999999988888899999999997432 33332 3578899999999999999999
Q ss_pred hHHHHHHHhhccCCC----CCccccceeeeEEEe
Q 028010 79 AGLIFLANKAVGQKL----GGQELVGGLDCTVHR 108 (215)
Q Consensus 79 ~G~QlLa~~~~~~~~----~~~~~lG~~~~~v~~ 108 (215)
.|+|+|++.+.+... +..++||++|++++.
T Consensus 80 ~G~qlL~~~~~~~~g~~~~~~~~glGll~~~~~~ 113 (194)
T cd01750 80 GGYQMLGKYIVDPEGVEGPGEIEGLGLLDVETEF 113 (194)
T ss_pred HHHHHhhhhccCCCCcccCCCcccccccceEEEe
Confidence 999999999864321 126899999998875
No 76
>PRK06186 hypothetical protein; Validated
Probab=99.68 E-value=4.3e-17 Score=134.56 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=60.7
Q ss_pred EEEEE----ecCCChHHHHHHHHHCCC----eEE--EECCC-----CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHH
Q 028010 2 VVGVL----ALQGSFNEHIAALKRLGV----KGV--EIRKP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (215)
Q Consensus 2 ~v~il----~~~G~~~s~~~~l~~~G~----~v~--~~~~~-----~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~ 66 (215)
||+++ .+..+|.|+.++|+.+|+ ++. .++.. +.|+++|+|++|||++.. .. .+....++.
T Consensus 3 ~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~r--g~---~Gki~ai~~ 77 (229)
T PRK06186 3 RIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYR--ND---DGALTAIRF 77 (229)
T ss_pred EEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcc--cH---hHHHHHHHH
Confidence 56664 367889999999998763 333 34321 246789999999997641 11 345678899
Q ss_pred HHHcCCcEEEEehHHHHHHHhhc
Q 028010 67 FVKMGKPVWGTCAGLIFLANKAV 89 (215)
Q Consensus 67 ~~~~~~PilGIC~G~QlLa~~~~ 89 (215)
+.++++|+||||+|||++.-.+.
T Consensus 78 Are~~iP~LGIClGmQ~avIe~a 100 (229)
T PRK06186 78 ARENGIPFLGTCGGFQHALLEYA 100 (229)
T ss_pred HHHcCCCeEeechhhHHHHHHHH
Confidence 99999999999999998665553
No 77
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.66 E-value=9.1e-16 Score=129.40 Aligned_cols=190 Identities=24% Similarity=0.304 Sum_probs=105.3
Q ss_pred EEEEEecCCChH--HHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcch--------H-HHHHhhCCHHHHH
Q 028010 2 VVGVLALQGSFN--EHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTT--------M-ARLAEYHNLFPAL 64 (215)
Q Consensus 2 ~v~il~~~G~~~--s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~~--------~-~~l~~~~~l~~~i 64 (215)
||+||.+.|... +...+|+..|++++.+.. ...++++|+|++|||++.. . ..+..+..+.+.|
T Consensus 3 kV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i 82 (259)
T PF13507_consen 3 KVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAI 82 (259)
T ss_dssp EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHHH
Confidence 899999999655 678999999999887642 3478899999999987531 1 1222124678999
Q ss_pred HHHHHc-CCcEEEEehHHHHHHHhhccCCCCCccccceeee----------EEEeccCCCcceeeeeec---cc----Cc
Q 028010 65 REFVKM-GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDC----------TVHRNFFGSQIQSFEAEL---SV----PA 126 (215)
Q Consensus 65 ~~~~~~-~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~----------~v~~~~~~~~~~~~~~~~---~~----p~ 126 (215)
++++++ |+++||||-|+|+|.+. |++++ ..++|..++ |++.+ .+ |.
T Consensus 83 ~~f~~~~g~~vLGIcNGfQiL~~~------------Gllp~~~~~~~~~~~~L~~N~s~~----fe~rwv~~~v~~~s~~ 146 (259)
T PF13507_consen 83 REFLERPGGFVLGICNGFQILVEL------------GLLPGGEIKDSEQSPALTPNASGR----FESRWVNLVVNENSPS 146 (259)
T ss_dssp HHHHHCTT-EEEEECHHHHHHCCC------------CCSTT------TT--EEE--TTSS-----EEEEEEEEE--SSTT
T ss_pred HHHHhcCCCeEEEEchHhHHHHHh------------CcCCCccccccCCCcEEcCCCCCC----eEEEEEEEEEecCCcc
Confidence 999998 99999999999999876 33333 666665433 33322 11 11
Q ss_pred ccCCCCCCcceee------eee-eCceeeecCCCeEEEEEeeCCCCccccCCcceeeecccCCCC-CceEEEEe--eCCE
Q 028010 127 LASQEGGPETFRG------VFI-RAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPE-KKVIVAVR--QGNL 196 (215)
Q Consensus 127 ~Gw~~~~~~~~~~------~~~-~~pl~~~~~~~~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~-~~~~~~~~--~~~v 196 (215)
+--..++...++- .+. +...++.+..+-++.-.|.+....+ +.+|.-|+|+ ...++++- .|+|
T Consensus 147 ~~~~~~~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~-------a~~yP~NPNGS~~~IAGics~~Grv 219 (259)
T PF13507_consen 147 IFLRGLEGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNP-------AQEYPRNPNGSVNNIAGICSPDGRV 219 (259)
T ss_dssp CCCTTTTCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB---------STTTSSS--GGGEEEEE-TTSSE
T ss_pred eecCCCCEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCc-------ccCCCCCCCCCccceeEEEcCCCCE
Confidence 1111111100000 000 1112222233335555665542211 1234445555 35677775 6899
Q ss_pred EEEeeCCccCCCCccccc
Q 028010 197 LGTAFHPELTADTRWYII 214 (215)
Q Consensus 197 ~g~QFHPE~s~~~~~~~~ 214 (215)
+|+.+|||.+...-.+.+
T Consensus 220 lglMpHPEr~~~~~~~~~ 237 (259)
T PF13507_consen 220 LGLMPHPERAFEPWQWPH 237 (259)
T ss_dssp EEESSBCCGTTCCCCSS-
T ss_pred EEEcCChHHhCchhhcCC
Confidence 999999999887766653
No 78
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.65 E-value=1.6e-15 Score=126.86 Aligned_cols=84 Identities=27% Similarity=0.458 Sum_probs=65.6
Q ss_pred EEEEecCCChH--HHHHHHHHCCCeEEEECCCC------CCCCcCEEEEcCCCcchHHHHH-----hhCC-HHHHHHHHH
Q 028010 3 VGVLALQGSFN--EHIAALKRLGVKGVEIRKPD------QLQNVSSLIIPGGESTTMARLA-----EYHN-LFPALREFV 68 (215)
Q Consensus 3 v~il~~~G~~~--s~~~~l~~~G~~v~~~~~~~------~l~~~d~lil~GG~~~~~~~l~-----~~~~-l~~~i~~~~ 68 (215)
|+||.++|... ++.++|++.|+++.++...+ +++++|+||+|||++.. +.+. .... +.+.|++++
T Consensus 1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~-d~l~~~~~~~~~~~~~~~l~~~~ 79 (238)
T cd01740 1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYG-DYLRAGAIAAASPLLMEEVKEFA 79 (238)
T ss_pred CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcc-cccccccccccChhHHHHHHHHH
Confidence 68999999644 78999999999988876432 46789999999996421 1111 1122 678899999
Q ss_pred HcCCcEEEEehHHHHHHHh
Q 028010 69 KMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 69 ~~~~PilGIC~G~QlLa~~ 87 (215)
++++|+||||.|+|+|+++
T Consensus 80 ~~g~pvlGIC~G~QlL~~~ 98 (238)
T cd01740 80 ERGGLVLGICNGFQILVEL 98 (238)
T ss_pred hCCCeEEEECcHHHHHHHc
Confidence 9999999999999999996
No 79
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.63 E-value=2.2e-16 Score=138.58 Aligned_cols=162 Identities=19% Similarity=0.279 Sum_probs=106.0
Q ss_pred EEEEEecCCChHHHH-HHHHHCCCeEEEECCC---CCC--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 2 VVGVLALQGSFNEHI-AALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 2 ~v~il~~~G~~~s~~-~~l~~~G~~v~~~~~~---~~l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
+|+||+|.-.|..++ +++|++.+...++.-. ..+ -.+.++||.||+.+.++... ..+...|-+ -++|+|
T Consensus 18 ~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~dA--P~~dp~if~---~~vpvL 92 (552)
T KOG1622|consen 18 TILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDA--PSFDPAIFE---LGVPVL 92 (552)
T ss_pred eEEEEeccchhhHHHHHHHHHHhhhhhhccCCChhhhhhcCCceEEEEeCCCCccccCcC--CCCChhHhc---cCCcce
Confidence 799999988898765 6799998766655432 233 35789999999877654332 233444433 589999
Q ss_pred EEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCC-C-
Q 028010 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP-D- 153 (215)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~-~- 153 (215)
|||+|||++++..|+ .|.+.. .| +-|-..+... ...++|.++.. .
T Consensus 93 GICYGmQ~i~~~~Gg--------------~V~~~~-~R------------E~G~~eI~v~------~~~~lF~~~~~~~~ 139 (552)
T KOG1622|consen 93 GICYGMQLINKLNGG--------------TVVKGM-VR------------EDGEDEIEVD------DSVDLFSGLHKTEF 139 (552)
T ss_pred eehhHHHHHHHHhCC--------------cccccc-cc------------CCCCceEEcC------chhhhhhhhcccce
Confidence 999999999999873 333211 01 1122222211 13457777722 2
Q ss_pred --eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEE--eeCCEEEEeeCCccCCCC
Q 028010 154 --VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAV--RQGNLLGTAFHPELTADT 209 (215)
Q Consensus 154 --~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~--~~~~v~g~QFHPE~s~~~ 209 (215)
+...|++.....+... .+.|+|... ..+++ +..++||+|||||++.+.
T Consensus 140 ~~VlltHgdsl~~v~~g~-kv~a~s~n~-------~va~i~~e~kkiyglqfhpEV~~t~ 191 (552)
T KOG1622|consen 140 MTVLLTHGDSLSKVPEGF-KVVAFSGNK-------PVAGILNELKKIYGLQFHPEVTLTP 191 (552)
T ss_pred eeeeeccccchhhccccc-eeEEeecCc-------ceeeehhhhhhhhcCCCCCcccccC
Confidence 5667888776666555 688888742 34444 345899999999998753
No 80
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.61 E-value=2.2e-15 Score=136.70 Aligned_cols=98 Identities=24% Similarity=0.399 Sum_probs=71.2
Q ss_pred CEEEEEecCCChHHHHHHHHHCCC-eEEE--ECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGV-KGVE--IRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~-~v~~--~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
|||+||++++.+ ++++.+|. ++.+ ++.++++.++|+||||||.......+. .++.+.|+++ |+|+|||
T Consensus 1 m~iGvlal~sv~----~al~~lg~~~~~vv~~~~~~~l~~~D~lILPGG~~~~~~~l~--~~l~~~i~~~---g~pvlGI 71 (476)
T PRK06278 1 MEIGLLDIKGSL----PCFENFGNLPTKIIDENNIKEIKDLDGLIIPGGSLVESGSLT--DELKKEILNF---DGYIIGI 71 (476)
T ss_pred CEEEEEehhhHH----HHHHHhcCCCcEEEEeCChHHhccCCEEEECCCchhhcchHH--HHHHHHHHHc---CCeEEEE
Confidence 899999997755 45666665 4444 777888999999999998532222231 3455556554 9999999
Q ss_pred ehHHHHHHHhhccCCC----CCccccceeeeEEE
Q 028010 78 CAGLIFLANKAVGQKL----GGQELVGGLDCTVH 107 (215)
Q Consensus 78 C~G~QlLa~~~~~~~~----~~~~~lG~~~~~v~ 107 (215)
|.|||||++.+.+... +..++||++|++..
T Consensus 72 CgG~QmLg~~~~eg~e~~~~~~~~GLGll~~~~~ 105 (476)
T PRK06278 72 CSGFQILSEKIDIGRKSPVPIIKEGLGLLDVEFS 105 (476)
T ss_pred cHHHHhcccccccCcccccccccCccceeeeeec
Confidence 9999999999854221 23789999998743
No 81
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.60 E-value=6.1e-15 Score=134.09 Aligned_cols=84 Identities=24% Similarity=0.390 Sum_probs=62.0
Q ss_pred EEEEEe----cCCChHHHHHHHHHCCC----eEEE--ECCC-------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHH
Q 028010 2 VVGVLA----LQGSFNEHIAALKRLGV----KGVE--IRKP-------DQLQNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (215)
Q Consensus 2 ~v~il~----~~G~~~s~~~~l~~~G~----~v~~--~~~~-------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i 64 (215)
||+++- +..+|.|+.++|+.+|+ .+.+ ++.. +.+.++|+|++|||+++.. . .+..+.+
T Consensus 291 ~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~--~---~g~i~ai 365 (525)
T TIGR00337 291 TIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERG--V---EGKILAI 365 (525)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChh--h---cChHHHH
Confidence 566643 55688999999999997 2322 2221 1256799999999986531 1 3456778
Q ss_pred HHHHHcCCcEEEEehHHHHHHHhhcc
Q 028010 65 REFVKMGKPVWGTCAGLIFLANKAVG 90 (215)
Q Consensus 65 ~~~~~~~~PilGIC~G~QlLa~~~~~ 90 (215)
+.+.+.++|+||||+|||+++.+++.
T Consensus 366 ~~a~e~~iP~LGIClG~Qll~i~~gr 391 (525)
T TIGR00337 366 KYARENNIPFLGICLGMQLAVIEFAR 391 (525)
T ss_pred HHHHHcCCCEEEEcHHHHHHHHHHHH
Confidence 88888999999999999999999864
No 82
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.60 E-value=1.7e-15 Score=137.73 Aligned_cols=84 Identities=23% Similarity=0.399 Sum_probs=63.2
Q ss_pred EEEEEe----cCCChHHHHHHHHHCCC----eEE--EECC--------CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHH
Q 028010 2 VVGVLA----LQGSFNEHIAALKRLGV----KGV--EIRK--------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (215)
Q Consensus 2 ~v~il~----~~G~~~s~~~~l~~~G~----~v~--~~~~--------~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~ 63 (215)
+|+++- +..+|.|+.++|+.+|+ ++. .++. .+.+.++|+|++|||++.. .. .+..+.
T Consensus 290 ~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~--~~---~g~i~~ 364 (533)
T PRK05380 290 TIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGER--GI---EGKILA 364 (533)
T ss_pred EEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCcc--cc---ccHHHH
Confidence 566643 56789999999999875 233 3332 1346789999999997642 11 345778
Q ss_pred HHHHHHcCCcEEEEehHHHHHHHhhcc
Q 028010 64 LREFVKMGKPVWGTCAGLIFLANKAVG 90 (215)
Q Consensus 64 i~~~~~~~~PilGIC~G~QlLa~~~~~ 90 (215)
++.+.++++|+||||+|||+|+.+++.
T Consensus 365 i~~a~e~~iPiLGIClGmQll~va~Gg 391 (533)
T PRK05380 365 IRYARENNIPFLGICLGMQLAVIEFAR 391 (533)
T ss_pred HHHHHHCCCcEEEEchHHHHHHHHhcc
Confidence 888888999999999999999999874
No 83
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.59 E-value=1.9e-14 Score=120.11 Aligned_cols=84 Identities=20% Similarity=0.351 Sum_probs=58.9
Q ss_pred EEEEEe----cCCChHHHHHHHHHC----CCeEEE--ECCC--------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHH
Q 028010 2 VVGVLA----LQGSFNEHIAALKRL----GVKGVE--IRKP--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (215)
Q Consensus 2 ~v~il~----~~G~~~s~~~~l~~~----G~~v~~--~~~~--------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~ 63 (215)
||+++- +..+|.|+.++|+.+ +.++.+ ++.. +.+.++|+||++||++.. .+ .+..+.
T Consensus 2 ~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~--~~---~~~~~~ 76 (235)
T cd01746 2 RIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIR--GV---EGKILA 76 (235)
T ss_pred EEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCc--ch---hhHHHH
Confidence 455543 345677887777764 344443 3321 245679999999997542 12 234577
Q ss_pred HHHHHHcCCcEEEEehHHHHHHHhhcc
Q 028010 64 LREFVKMGKPVWGTCAGLIFLANKAVG 90 (215)
Q Consensus 64 i~~~~~~~~PilGIC~G~QlLa~~~~~ 90 (215)
++.+.+.++|+||||+|+|+|+.++|+
T Consensus 77 i~~~~~~~~PvlGIClG~Q~l~~~~g~ 103 (235)
T cd01746 77 IKYARENNIPFLGICLGMQLAVIEFAR 103 (235)
T ss_pred HHHHHHCCceEEEEEhHHHHHHHHHHH
Confidence 888888999999999999999999975
No 84
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.57 E-value=3.7e-15 Score=122.47 Aligned_cols=167 Identities=19% Similarity=0.283 Sum_probs=91.8
Q ss_pred HHHHHHHHCCCeEEEECC---CCC----CCCcCEEEEcCCCc---chH-----HH---HHhhCC--HHHHHHHHHHcCCc
Q 028010 14 EHIAALKRLGVKGVEIRK---PDQ----LQNVSSLIIPGGES---TTM-----AR---LAEYHN--LFPALREFVKMGKP 73 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~---~~~----l~~~d~lil~GG~~---~~~-----~~---l~~~~~--l~~~i~~~~~~~~P 73 (215)
.+.++...+|.-..++.. .++ ++..|+||++||.+ ..| +. ....++ -..+|++++++|+|
T Consensus 30 ~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iP 109 (243)
T COG2071 30 DYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIP 109 (243)
T ss_pred HHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCC
Confidence 356777778766555552 222 45789999999931 101 00 111122 24689999999999
Q ss_pred EEEEehHHHHHHHhhccCCCCCccc-cceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeec-C
Q 028010 74 VWGTCAGLIFLANKAVGQKLGGQEL-VGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDV-G 151 (215)
Q Consensus 74 ilGIC~G~QlLa~~~~~~~~~~~~~-lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~-~ 151 (215)
|||||.|+|+|..++|+......+. .|.++-+. . ..+...-+.+.. .....+..+ +
T Consensus 110 ILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~-~--------------~~~~~~~H~V~i-------~~~s~La~i~g 167 (243)
T COG2071 110 ILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQ-P--------------NPVHIESHEVHI-------EPGSKLAKILG 167 (243)
T ss_pred EEEEccchHHHHHHhcCeeehhhhcccccccccC-C--------------CCcccceeEEEe-------cCCccHHHhcC
Confidence 9999999999999998532111111 11111000 0 001111111111 123333444 3
Q ss_pred CCeEEEEEeeC---CCCccccCCcceeeecccCCCCCceEEEEee---CCEEEEeeCCccCCCCc
Q 028010 152 PDVDVLADYPV---PSNKVLYSSSTVEIQEENAMPEKKVIVAVRQ---GNLLGTAFHPELTADTR 210 (215)
Q Consensus 152 ~~~~~~Hs~~~---~~~~~~~~~~la~s~~~~~~~~~~~~~~~~~---~~v~g~QFHPE~s~~~~ 210 (215)
+.-..+.|++. ....+.. .+.|.++++ .+.|+.. .+++|||+|||...+..
T Consensus 168 ~~~~~VNS~HhQaIk~La~~L-~V~A~a~DG-------~VEAie~~~~~fvlGVQWHPE~~~~~~ 224 (243)
T COG2071 168 ESEFMVNSFHHQAIKKLAPGL-VVEARAPDG-------TVEAVEVKNDAFVLGVQWHPEYLVDTN 224 (243)
T ss_pred ccceeecchHHHHHHHhCCCc-EEEEECCCC-------cEEEEEecCCceEEEEecChhhhccCC
Confidence 22133444433 2333333 678888875 6677653 47999999999987665
No 85
>PLN02327 CTP synthase
Probab=99.53 E-value=1.6e-13 Score=125.20 Aligned_cols=95 Identities=18% Similarity=0.252 Sum_probs=65.6
Q ss_pred EEEEE----ecCCChHHHHHHHHHCCC----eE--EEECC-----C-------------CCCCCcCEEEEcCCCcchHHH
Q 028010 2 VVGVL----ALQGSFNEHIAALKRLGV----KG--VEIRK-----P-------------DQLQNVSSLIIPGGESTTMAR 53 (215)
Q Consensus 2 ~v~il----~~~G~~~s~~~~l~~~G~----~v--~~~~~-----~-------------~~l~~~d~lil~GG~~~~~~~ 53 (215)
||+++ .+..+|.|+.++|+.+|+ ++ ..++. . +.+.++|+|++|||+++. .
T Consensus 299 ~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~--~ 376 (557)
T PLN02327 299 RIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDR--G 376 (557)
T ss_pred EEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCc--c
Confidence 45554 356789999999998763 33 33321 1 135689999999997542 1
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEE
Q 028010 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVH 107 (215)
Q Consensus 54 l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~ 107 (215)
. .+....++.+.+.++|+||||+|||+++..++. .-+|+-+...+
T Consensus 377 ~---~G~i~ai~~are~~iP~LGIClGmQl~viefaR------nvlG~~dAnS~ 421 (557)
T PLN02327 377 V---EGKILAAKYARENKVPYLGICLGMQIAVIEFAR------SVLGLKDANST 421 (557)
T ss_pred c---ccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHH------hhcCCcCCCcc
Confidence 1 244567777778999999999999999999863 33555555444
No 86
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.50 E-value=7.8e-14 Score=124.29 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=59.5
Q ss_pred EEEEE----ecCCChHHHHHHHHHCCCe------EEEECCC-------CCCCC-cCEEEEcCCCcchHHHHHhhCCHHHH
Q 028010 2 VVGVL----ALQGSFNEHIAALKRLGVK------GVEIRKP-------DQLQN-VSSLIIPGGESTTMARLAEYHNLFPA 63 (215)
Q Consensus 2 ~v~il----~~~G~~~s~~~~l~~~G~~------v~~~~~~-------~~l~~-~d~lil~GG~~~~~~~l~~~~~l~~~ 63 (215)
||+++ .+.++|.|+.++|+..|+. +..++.. +.+.. +|++++|||++.- .. .+....
T Consensus 290 ~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~R--G~---eGkI~A 364 (533)
T COG0504 290 TIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYR--GV---EGKIAA 364 (533)
T ss_pred EEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcC--ch---HHHHHH
Confidence 45653 3788999999999998752 3334321 12223 8999999998731 11 234677
Q ss_pred HHHHHHcCCcEEEEehHHHHHHHhhc
Q 028010 64 LREFVKMGKPVWGTCAGLIFLANKAV 89 (215)
Q Consensus 64 i~~~~~~~~PilGIC~G~QlLa~~~~ 89 (215)
++.+.++++|+||||+|||+..-.+-
T Consensus 365 i~yAREn~iP~lGIClGmQ~aviE~A 390 (533)
T COG0504 365 IRYARENNIPFLGICLGMQLAVIEFA 390 (533)
T ss_pred HHHHHhcCCCEEEEchhHHHHHHHHH
Confidence 88888899999999999999877663
No 87
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.48 E-value=7.4e-13 Score=102.83 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=99.2
Q ss_pred EEEEecCCChH-HHHHHH-HHCCCeEEEECCCC----CC--CCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHcCCc
Q 028010 3 VGVLALQGSFN-EHIAAL-KRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKP 73 (215)
Q Consensus 3 v~il~~~G~~~-s~~~~l-~~~G~~v~~~~~~~----~l--~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~~~P 73 (215)
|.+++..+++. .+...| -+.|+.+.+.++.+ ++ .+.+.|+|.-|+... ..-+ -.+.|+++ .-.+|
T Consensus 21 iv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGI-----s~~~i~~f-~~~iP 94 (223)
T KOG0026|consen 21 IIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGI-----SLQTVLEL-GPLVP 94 (223)
T ss_pred EEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccc-----hHHHHHHh-CCCCc
Confidence 44555555544 456677 57789998887643 23 256787775544321 1111 13556554 35799
Q ss_pred EEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCceeeecCCC
Q 028010 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD 153 (215)
Q Consensus 74 ilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~pl~~~~~~~ 153 (215)
+||||+|.|.+.+++|+. -...+.+++.+++.+-. +-+ . .+--+|++++..
T Consensus 95 ~fGvCMGlQCi~e~fGGk--v~~a~~~i~HGK~S~i~---------------~D~---------~---~~~G~f~g~~q~ 145 (223)
T KOG0026|consen 95 LFGVCMGLQCIGEAFGGK--IVRSPFGVMHGKSSMVH---------------YDE---------K---GEEGLFSGLSNP 145 (223)
T ss_pred eeeeehhhhhhhhhhCcE--EeccCcceeeccccccc---------------cCC---------c---cccccccCCCCC
Confidence 999999999999999852 12334555555544311 101 0 123567888765
Q ss_pred --eEEEEEeeCCC--CccccCCcceeeecccCCCCCceEEEEeeC---CEEEEeeCCcc
Q 028010 154 --VDVLADYPVPS--NKVLYSSSTVEIQEENAMPEKKVIVAVRQG---NLLGTAFHPEL 205 (215)
Q Consensus 154 --~~~~Hs~~~~~--~~~~~~~~la~s~~~~~~~~~~~~~~~~~~---~v~g~QFHPE~ 205 (215)
+..+||..... .|.++-.+.||++.+ .++++|+. +|-|+|||||.
T Consensus 146 ~~V~RYHSLa~~~sSlP~d~L~VTawTEnG-------~iMgaRHkKY~~ieGVQfHPES 197 (223)
T KOG0026|consen 146 FIVGRYHSLVIEKDSFPSDELEVTAWTEDG-------LVMAARHRKYKHIQGVQFHPES 197 (223)
T ss_pred eEEEeeeeeeeecccCCccceeeeEeccCc-------EEEeeeccccccccceeecchh
Confidence 45589986632 332222688999875 77887754 58899999995
No 88
>PRK00784 cobyric acid synthase; Provisional
Probab=99.48 E-value=3e-13 Score=123.88 Aligned_cols=106 Identities=26% Similarity=0.392 Sum_probs=85.3
Q ss_pred EEEEEecCCChH-HHHHHHHH-CCCeEEEECCCCCCCCcCEEEEcCCCcch--HHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 2 VVGVLALQGSFN-EHIAALKR-LGVKGVEIRKPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 2 ~v~il~~~G~~~-s~~~~l~~-~G~~v~~~~~~~~l~~~d~lil~GG~~~~--~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
||+|..++..+. +..++|++ .|++++.+++.++++++|+||||||.+.. +.++ .+.++.+.|++++++|+|++||
T Consensus 253 ~i~v~~~~~a~~f~nl~~l~~~~g~~v~~~s~~~~l~~~d~lilpGg~~~~~~~~~~-~~~~l~~~i~~~~~~g~pilg~ 331 (488)
T PRK00784 253 RIAVIRLPRISNFTDFDPLRAEPGVDVRYVRPGEPLPDADLVILPGSKNTIADLAWL-RESGWDEAIRAHARRGGPVLGI 331 (488)
T ss_pred EEEEEeCCCcCCccChHHHhhcCCCeEEEECCccccccCCEEEECCccchHHHHHHH-HHcCHHHHHHHHHHcCCeEEEE
Confidence 789988665322 67789987 99999999998888899999999997643 3333 3467899999999999999999
Q ss_pred ehHHHHHHHhhccCC-----CCCccccceeeeEEEe
Q 028010 78 CAGLIFLANKAVGQK-----LGGQELVGGLDCTVHR 108 (215)
Q Consensus 78 C~G~QlLa~~~~~~~-----~~~~~~lG~~~~~v~~ 108 (215)
|.|+|+|++.+.+.. .+..+++|++|++++.
T Consensus 332 C~G~~~L~~~~~~~~G~~~~~~~~~glG~l~~~~~~ 367 (488)
T PRK00784 332 CGGYQMLGRRIADPDGVEGAPGSVEGLGLLDVETVF 367 (488)
T ss_pred CHHHHHHhhhccCCCCcccCCCCcCCCCceeeEEEe
Confidence 999999999985321 1224899999998864
No 89
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.47 E-value=6.1e-13 Score=120.81 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=87.1
Q ss_pred EEEEEec---CCChHHHHHHHHHCCCeEEEECC--CCCCCCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 2 VVGVLAL---QGSFNEHIAALKRLGVKGVEIRK--PDQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 2 ~v~il~~---~G~~~s~~~~l~~~G~~v~~~~~--~~~l~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
||+|... .-.|.+..++|++.|++++.++. .+++.++|+||||||++.. ...+..+..+.+.|+++.++|+|++
T Consensus 247 ~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~~~~l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~ 326 (451)
T PRK01077 247 RIAVARDAAFNFYYPENLELLRAAGAELVFFSPLADEALPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIY 326 (451)
T ss_pred eEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcCCCCCCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEE
Confidence 6788764 44577889999999999999986 3567899999999998753 2455556788899999999999999
Q ss_pred EEehHHHHHHHhhccCCCCCccccceeeeEEEe
Q 028010 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR 108 (215)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~ 108 (215)
|||.|+|+|++.+.+......+++|++|.++.-
T Consensus 327 aiCgG~~~L~~~i~d~~g~~~~~lGll~~~t~~ 359 (451)
T PRK01077 327 AECGGLMYLGESLEDADGERHPMVGLLPGEASM 359 (451)
T ss_pred EEcHHHHHHHhhhcCCCCCeeecccccceeEEE
Confidence 999999999999975432346899999998754
No 90
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.46 E-value=6.6e-13 Score=120.48 Aligned_cols=106 Identities=23% Similarity=0.387 Sum_probs=86.2
Q ss_pred EEEEEec---CCChHHHHHHHHHCCCeEEEECCC--CCCCCcCEEEEcCCCcchHH-HHHhhCCHHHHHHHHHHcCCcEE
Q 028010 2 VVGVLAL---QGSFNEHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 2 ~v~il~~---~G~~~s~~~~l~~~G~~v~~~~~~--~~l~~~d~lil~GG~~~~~~-~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
||+|... .-.|.+..+.|++.|++++.+++. ++++++|+|+||||+++.+. .+..+.++.+.|++++++|+|++
T Consensus 246 ~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~~d~~l~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~ 325 (449)
T TIGR00379 246 RIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPLEDTELPDVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIY 325 (449)
T ss_pred EEEEEechhhceeHHHHHHHHHHCCCEEEEECCccCCCCCCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEE
Confidence 6777663 334568889999999999999874 56789999999999876543 45545778999999999999999
Q ss_pred EEehHHHHHHHhhccCCCCCccccceeeeEEEe
Q 028010 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR 108 (215)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~ 108 (215)
|||.|+|+|++.+.+. .+..+++|++|+.++-
T Consensus 326 g~CgG~~~L~~~i~~~-~g~~~~~Gllp~~t~~ 357 (449)
T TIGR00379 326 GECGGLMYLSQSLDNF-EGQIFMVGMLPTAATM 357 (449)
T ss_pred EEcHHHHHHHhhhcCC-CCceeceeeeeeEEEE
Confidence 9999999999999652 2345999999998764
No 91
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.45 E-value=4.9e-13 Score=131.95 Aligned_cols=87 Identities=20% Similarity=0.312 Sum_probs=68.0
Q ss_pred CEEEEEecCCChH--HHHHHHHHCCCeEEEEC--CC-------------CCCCCcCEEEEcCCCcc--hH-------HHH
Q 028010 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR--KP-------------DQLQNVSSLIIPGGEST--TM-------ARL 54 (215)
Q Consensus 1 m~v~il~~~G~~~--s~~~~l~~~G~~v~~~~--~~-------------~~l~~~d~lil~GG~~~--~~-------~~l 54 (215)
+||+||.++|... +...+|+++|+++..+. +. ..+.++|+|++|||++. .. ..+
T Consensus 978 pkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~aa~ 1057 (1239)
T TIGR01857 978 PRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAI 1057 (1239)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHHHH
Confidence 5999999999766 56889999998866553 21 24688999999999752 11 123
Q ss_pred HhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 55 ~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
..+..+.+.++++++.++++||||.|+|+|.+.
T Consensus 1058 ~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857 1058 LRNPKVRVAIDSFLARDGLILGICNGFQALVKS 1090 (1239)
T ss_pred hhChHHHHHHHHHHhCCCcEEEechHHHHHHHc
Confidence 333567888999999999999999999999986
No 92
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.40 E-value=1e-12 Score=130.51 Aligned_cols=87 Identities=21% Similarity=0.275 Sum_probs=68.0
Q ss_pred CEEEEEecCCChH--HHHHHHHHCCCeEEEECC------CCCCCCcCEEEEcCCCcc------h---HHHHHhhCCHHHH
Q 028010 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGEST------T---MARLAEYHNLFPA 63 (215)
Q Consensus 1 m~v~il~~~G~~~--s~~~~l~~~G~~v~~~~~------~~~l~~~d~lil~GG~~~------~---~~~l~~~~~l~~~ 63 (215)
+||+||.++|... +...+|+.+|+++..+.- ...++++++|++|||++. . ...+..+..+.+.
T Consensus 1038 pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~ 1117 (1307)
T PLN03206 1038 PKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQ 1117 (1307)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHH
Confidence 5999999999766 578999999988766542 235789999999999752 1 1233334567888
Q ss_pred HHHHHH-cCCcEEEEehHHHHHHHh
Q 028010 64 LREFVK-MGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 64 i~~~~~-~~~PilGIC~G~QlLa~~ 87 (215)
++++++ .++++||||.|+|+|++.
T Consensus 1118 ~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1118 FQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred HHHHHhCCCceEEEEcHHHHHHHHc
Confidence 999995 599999999999999986
No 93
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.39 E-value=3.5e-12 Score=114.82 Aligned_cols=105 Identities=25% Similarity=0.346 Sum_probs=84.5
Q ss_pred EEEEEe---cCCChHHHHHHHHHCCCeEEEECC--CCCCCCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 2 VVGVLA---LQGSFNEHIAALKRLGVKGVEIRK--PDQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 2 ~v~il~---~~G~~~s~~~~l~~~G~~v~~~~~--~~~l~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
||+|-. |.--|.+..+.|+++ ++++.+++ .+.++++|+|+||||+++. ..++..+ ...+.|++++++|+|++
T Consensus 235 ~iavA~D~AF~FyY~enl~~L~~~-aelv~fSPl~~~~lp~~D~l~lpGG~~e~~~~~L~~n-~~~~~i~~~~~~G~pi~ 312 (433)
T PRK13896 235 TVAVARDAAFCFRYPATIERLRER-ADVVTFSPVAGDPLPDCDGVYLPGGYPELHADALADS-PALDELADRAADGLPVL 312 (433)
T ss_pred eEEEEEcCccceeCHHHHHHHHhc-CcEEEEcCCCCCCCCCCCEEEeCCCchhhHHHHHHhC-CcHHHHHHHHHCCCcEE
Confidence 566643 555688999999999 99999887 4567789999999998754 3456553 44589999999999999
Q ss_pred EEehHHHHHHHhhccCCCCCccccceeeeEEEe
Q 028010 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR 108 (215)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~ 108 (215)
|||.|+|+|++.+.+......+++|++|+++.-
T Consensus 313 aeCGG~q~L~~~i~d~eG~~~~m~Gllp~~t~m 345 (433)
T PRK13896 313 GECGGLMALAESLTTTDGDTHEMAGVLPADVTM 345 (433)
T ss_pred EEehHHHHhhccccCCCCCEecccceeeEEEEE
Confidence 999999999999965322357899999998864
No 94
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=99.36 E-value=3.5e-12 Score=100.28 Aligned_cols=76 Identities=20% Similarity=0.357 Sum_probs=62.2
Q ss_pred CCCCCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhc-----cCCCCCccccceeeeEE
Q 028010 33 DQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV-----GQKLGGQELVGGLDCTV 106 (215)
Q Consensus 33 ~~l~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~-----~~~~~~~~~lG~~~~~v 106 (215)
+.+.++|+|+||||++.. ...+.++.++.+.|++++++|+||+|||.|+|+|++.+. +......+++|++|..+
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~d~~e~~~~g~~~~glGllp~~t 82 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESIIDGVEGDADGKRYPGLGLLPIDT 82 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHhhccccCCCCcceeeeceeeeEE
Confidence 456789999999998753 234555678999999999999999999999999999997 32222488999999987
Q ss_pred Ee
Q 028010 107 HR 108 (215)
Q Consensus 107 ~~ 108 (215)
+.
T Consensus 83 ~~ 84 (158)
T PF07685_consen 83 TM 84 (158)
T ss_pred EE
Confidence 65
No 95
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.35 E-value=9.5e-12 Score=124.48 Aligned_cols=87 Identities=23% Similarity=0.322 Sum_probs=66.7
Q ss_pred CEEEEEecCCChH--HHHHHHHHCCCeEEEEC--C----CCCCCCcCEEEEcCCCcc--h----H---HHHHhhCCHHHH
Q 028010 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR--K----PDQLQNVSSLIIPGGEST--T----M---ARLAEYHNLFPA 63 (215)
Q Consensus 1 m~v~il~~~G~~~--s~~~~l~~~G~~v~~~~--~----~~~l~~~d~lil~GG~~~--~----~---~~l~~~~~l~~~ 63 (215)
+||+||.++|... +...+|+.+|+++..+. + ...++++++|++|||++. . - ..+..+..+.+.
T Consensus 1036 pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~ 1115 (1290)
T PRK05297 1036 PKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQ 1115 (1290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcccchHHHHHHHHhhccHHHHHH
Confidence 4899999999766 57889999999876654 2 134789999999999752 1 1 112223466788
Q ss_pred HHHHH-HcCCcEEEEehHHHHHHHh
Q 028010 64 LREFV-KMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 64 i~~~~-~~~~PilGIC~G~QlLa~~ 87 (215)
+++++ +.++++||||.|+|+|.+.
T Consensus 1116 ~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1116 FEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHHHHhCCCceEEEEcHHHHHHHHh
Confidence 88877 6799999999999999996
No 96
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.34 E-value=1.7e-11 Score=122.55 Aligned_cols=88 Identities=24% Similarity=0.281 Sum_probs=67.7
Q ss_pred CEEEEEecCCChH--HHHHHHHHCCCeEEEEC--C----CCCCCCcCEEEEcCCCcc--h----H---HHHHhhCCHHHH
Q 028010 1 MVVGVLALQGSFN--EHIAALKRLGVKGVEIR--K----PDQLQNVSSLIIPGGEST--T----M---ARLAEYHNLFPA 63 (215)
Q Consensus 1 m~v~il~~~G~~~--s~~~~l~~~G~~v~~~~--~----~~~l~~~d~lil~GG~~~--~----~---~~l~~~~~l~~~ 63 (215)
+||+||.++|... +...+|+.+|+++..+. + ...++++++|++|||++. . . ..+..+..+.+.
T Consensus 1056 p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~ 1135 (1310)
T TIGR01735 1056 PKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQ 1135 (1310)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHH
Confidence 4899999999766 57889999998876654 2 134789999999999752 1 1 123334567888
Q ss_pred HHHHH-HcCCcEEEEehHHHHHHHhh
Q 028010 64 LREFV-KMGKPVWGTCAGLIFLANKA 88 (215)
Q Consensus 64 i~~~~-~~~~PilGIC~G~QlLa~~~ 88 (215)
+++++ +.++++||||.|+|+|+..+
T Consensus 1136 ~~~f~~~~d~~~LGiCNGfQ~L~~~~ 1161 (1310)
T TIGR01735 1136 FQAFFKRPDTFSLGVCNGCQMLSNLL 1161 (1310)
T ss_pred HHHHHhCCCceEEEecHHHHHHHHHh
Confidence 99999 78999999999999999443
No 97
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.31 E-value=1.3e-11 Score=112.67 Aligned_cols=105 Identities=26% Similarity=0.359 Sum_probs=79.1
Q ss_pred EEEEEecCCChH-HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcch--HHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWGTC 78 (215)
Q Consensus 2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~--~~~l~~~~~l~~~i~~~~~~~~PilGIC 78 (215)
||+|..++..+. ...++|+.. -.+..+..++++.++|+|++|||.+.. +..+. +.++.+.|++++++|+|++|||
T Consensus 249 ~Iav~~~~~~~nf~~~~~L~~~-~~~~f~~~~~~l~~~d~lilpGg~~~~~~~~~l~-~~~~~~~i~~~~~~G~pvlgiC 326 (475)
T TIGR00313 249 RIGVVRLPRISNFTDFEPLRYE-AFVKFLDLDDSLTGCDAVIIPGSKSTIADLYALK-QSGFAEEILDFAKEGGIVIGIC 326 (475)
T ss_pred EEEEEcCCcccCccChHHHhhC-CCeEEeCCccccccCCEEEECCcchHHHHHHHHH-hcChHHHHHHHHHcCCcEEEEc
Confidence 788888665322 155677766 245556666778899999999998653 33443 4678999999999999999999
Q ss_pred hHHHHHHHhhccCC-----CCCccccceeeeEEEe
Q 028010 79 AGLIFLANKAVGQK-----LGGQELVGGLDCTVHR 108 (215)
Q Consensus 79 ~G~QlLa~~~~~~~-----~~~~~~lG~~~~~v~~ 108 (215)
.|||+|++.+.+.. .+..+++|++|++++.
T Consensus 327 gG~q~Lg~~i~d~~g~e~~~~~~~glGll~~~t~~ 361 (475)
T TIGR00313 327 GGYQMLGKELIDKEKKESDVGDIEGLGLLDAKTYF 361 (475)
T ss_pred HHHHHhhhhhcCCccccCCCCCcceeeeeeeEEEE
Confidence 99999999885421 2356899999998764
No 98
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.29 E-value=9.3e-11 Score=110.97 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=60.9
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEECCCCCC--CCcCEEEEcCCCcc--hHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQL--QNVSSLIIPGGEST--TMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~~l--~~~d~lil~GG~~~--~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
||.+++. |-....++.|..+|+++.++...-++ .+||+|++..|+++ ..+.+ .+-+++.++.++|++||
T Consensus 174 ~I~aiDc-G~K~N~IRcL~~RGa~vtVvPw~~~i~~~~yDGlflSNGPGdPe~~~~~------v~~vr~lL~~~~PvfGI 246 (1435)
T KOG0370|consen 174 RILAIDC-GLKYNQIRCLVKRGAEVTVVPWDYPIAKEEYDGLFLSNGPGDPELCPLL------VQNVRELLESNVPVFGI 246 (1435)
T ss_pred EEEEccc-CchHHHHHHHHHhCceEEEecCCccccccccceEEEeCCCCCchhhHHH------HHHHHHHHhCCCCeEEE
Confidence 3444444 44556789999999999998755443 47999999998754 33333 45566666668999999
Q ss_pred ehHHHHHHHhhcc
Q 028010 78 CAGLIFLANKAVG 90 (215)
Q Consensus 78 C~G~QlLa~~~~~ 90 (215)
|+|+|+||.+.|.
T Consensus 247 ClGHQllA~AaGa 259 (1435)
T KOG0370|consen 247 CLGHQLLALAAGA 259 (1435)
T ss_pred ehhhHHHHHhhCC
Confidence 9999999999974
No 99
>PHA03366 FGAM-synthase; Provisional
Probab=99.28 E-value=4.5e-11 Score=119.59 Aligned_cols=86 Identities=24% Similarity=0.267 Sum_probs=67.0
Q ss_pred EEEEEecCCChH--HHHHHHHHCCCeEEEEC--C---CCCCCCcCEEEEcCCCcc------h---HHHHHhhCCHHHHHH
Q 028010 2 VVGVLALQGSFN--EHIAALKRLGVKGVEIR--K---PDQLQNVSSLIIPGGEST------T---MARLAEYHNLFPALR 65 (215)
Q Consensus 2 ~v~il~~~G~~~--s~~~~l~~~G~~v~~~~--~---~~~l~~~d~lil~GG~~~------~---~~~l~~~~~l~~~i~ 65 (215)
||+||.++|... +...+|+++|+++..+. + ...++++++|+++||++. . ...+..+..+.+.++
T Consensus 1030 rVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~ 1109 (1304)
T PHA03366 1030 RVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTFLDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALL 1109 (1304)
T ss_pred eEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCccccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHH
Confidence 899999999766 57899999999876654 2 123889999999999752 1 123333456778899
Q ss_pred HHHH-cCCcEEEEeh-HHHHHHHh
Q 028010 66 EFVK-MGKPVWGTCA-GLIFLANK 87 (215)
Q Consensus 66 ~~~~-~~~PilGIC~-G~QlLa~~ 87 (215)
++.+ .++++||||- |.|+|++.
T Consensus 1110 ~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1110 RFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred HHHhCCCCeEEEeCcHHHHHHHHc
Confidence 9985 5999999998 99999986
No 100
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.26 E-value=5.3e-11 Score=105.53 Aligned_cols=106 Identities=22% Similarity=0.395 Sum_probs=88.6
Q ss_pred EEEEEe---cCCChHHHHHHHHHCCCeEEEECCCC--CCC-CcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHcCCcE
Q 028010 2 VVGVLA---LQGSFNEHIAALKRLGVKGVEIRKPD--QLQ-NVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 2 ~v~il~---~~G~~~s~~~~l~~~G~~v~~~~~~~--~l~-~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~~~Pi 74 (215)
||+|-. |.--|.+..+.|+++|++++.+++.+ +++ ++|+|+|+||++.. .+.|..++.+++.|+++++.|+|+
T Consensus 247 rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~pi 326 (451)
T COG1797 247 RIAVARDAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPI 326 (451)
T ss_pred eEEEEecchhccccHHHHHHHHHCCCEEEEeCCcCCCCCCCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCce
Confidence 677643 55678899999999999999998754 466 69999999999864 457777777899999999999999
Q ss_pred EEEehHHHHHHHhhccCCCCCccccceeeeEEE
Q 028010 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVH 107 (215)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~ 107 (215)
+|.|.|+..|++.+.+......+++|++++.+.
T Consensus 327 yaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~ 359 (451)
T COG1797 327 YAECGGLMYLGESLEDADGDTYEMVGVLPGSTR 359 (451)
T ss_pred EEecccceeehhheeccCCceeeeeeeeccchh
Confidence 999999999999997654446789999988754
No 101
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.22 E-value=1.7e-11 Score=107.95 Aligned_cols=90 Identities=19% Similarity=0.297 Sum_probs=60.7
Q ss_pred cCCChHHHHHHHHHCCC------eEEEECC--C----------------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHH
Q 028010 8 LQGSFNEHIAALKRLGV------KGVEIRK--P----------------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (215)
Q Consensus 8 ~~G~~~s~~~~l~~~G~------~v~~~~~--~----------------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~ 63 (215)
+.++|.|+.++|+.+.+ ++..++. . +.+..+|++++|||++.. -. .+....
T Consensus 310 l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~R--Gv---eG~i~A 384 (585)
T KOG2387|consen 310 LSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDR--GV---EGKILA 384 (585)
T ss_pred chHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCccccc--ch---hHHHHH
Confidence 56789999999998753 3444432 1 124579999999998641 01 233455
Q ss_pred HHHHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEe
Q 028010 64 LREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR 108 (215)
Q Consensus 64 i~~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~ 108 (215)
++-+.++++|+||||+|||+-.-.+. +.-||+-|...++
T Consensus 385 ak~ARen~iP~LGiCLGmQ~AvIEfa------RnvLg~~dAnStE 423 (585)
T KOG2387|consen 385 AKWARENKIPFLGICLGMQLAVIEFA------RNVLGLKDANSTE 423 (585)
T ss_pred HHHHHhcCCCeEeeehhhhHHHHHHH------HHhhCCCCCCccc
Confidence 66666789999999999999776653 3445666555544
No 102
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=99.18 E-value=3.2e-10 Score=91.92 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=71.9
Q ss_pred CCChHHHHHHHHHCCCeEEEEC--CCCC--CCCcCEEEEcCCCcch----HHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010 9 QGSFNEHIAALKRLGVKGVEIR--KPDQ--LQNVSSLIIPGGESTT----MARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (215)
Q Consensus 9 ~G~~~s~~~~l~~~G~~v~~~~--~~~~--l~~~d~lil~GG~~~~----~~~l~~~~~l~~~i~~~~~~~~PilGIC~G 80 (215)
.||...+..+.+.+|+.+.++. ..+. .+++|.+++.||.+.. ++.+ ....+.|+.+++.++|+|.||.|
T Consensus 20 ~GNil~Lr~ra~~rgi~v~i~~vsl~d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~---~~k~~~l~~~i~~g~p~laiCgg 96 (250)
T COG3442 20 NGNILVLRQRAEKRGIKVEIVEVSLTDTFPDDSYDLYFLGGGQDYEQEIATRDL---LTKKEGLKDAIENGKPVLAICGG 96 (250)
T ss_pred CCceeeehHHHHhcCCceEEEEeecCCCCCcccccEEEecCchHHHHHHHhhhh---ccccHHHHHHHhcCCcEEEEccc
Confidence 4555667788999998776643 3333 3579999999987542 2222 22357899999999999999999
Q ss_pred HHHHHHhhccCCCCCccccceeeeEEE
Q 028010 81 LIFLANKAVGQKLGGQELVGGLDCTVH 107 (215)
Q Consensus 81 ~QlLa~~~~~~~~~~~~~lG~~~~~v~ 107 (215)
.|+|++.+........++||++|....
T Consensus 97 ~QlLG~yY~~a~G~ri~GlGiLd~~T~ 123 (250)
T COG3442 97 YQLLGQYYETASGTRIDGLGILDHYTE 123 (250)
T ss_pred hhhccceeecCCCcEeecccceeeeec
Confidence 999999997655456899999987655
No 103
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=99.16 E-value=1e-10 Score=96.20 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=79.7
Q ss_pred EEEEEecCCC-----hHHHHHHHHHC-CCeEEEEC-----C-CCCCCCcCEEEEcCCCc-chHHHHHhhCCHHHHHHHHH
Q 028010 2 VVGVLALQGS-----FNEHIAALKRL-GVKGVEIR-----K-PDQLQNVSSLIIPGGES-TTMARLAEYHNLFPALREFV 68 (215)
Q Consensus 2 ~v~il~~~G~-----~~s~~~~l~~~-G~~v~~~~-----~-~~~l~~~d~lil~GG~~-~~~~~l~~~~~l~~~i~~~~ 68 (215)
||+++-.... ..+..++++++ |++++.+. . .+.+.++|+|++|||.. ..+..++. .++.+.|++++
T Consensus 33 ~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~-~~l~~~l~~~~ 111 (212)
T cd03146 33 KVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWRE-HGLDAILKAAL 111 (212)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHH-cCHHHHHHHHH
Confidence 5677665332 22567899999 99988776 2 34567899999999853 45667765 58899999999
Q ss_pred HcCCcEEEEehHHHHHHHhhcc------CCCCCccccceeeeEEEec
Q 028010 69 KMGKPVWGTCAGLIFLANKAVG------QKLGGQELVGGLDCTVHRN 109 (215)
Q Consensus 69 ~~~~PilGIC~G~QlLa~~~~~------~~~~~~~~lG~~~~~v~~~ 109 (215)
++|+|++|+|+|+|+++..... ......++||++++.+..|
T Consensus 112 ~~g~~i~G~SAGa~i~~~~~~~~~~~~~e~~~~~~GLGll~~~v~pH 158 (212)
T cd03146 112 ERGVVYIGWSAGSNCWFPSIGTTDSMPIELPPSFNGLGLLPFQICPH 158 (212)
T ss_pred HCCCEEEEECHhHHhhCCCccccCCCCCccccccceecCcCccccCC
Confidence 9999999999999999995211 1112468999998877665
No 104
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=99.13 E-value=4.5e-10 Score=101.19 Aligned_cols=105 Identities=23% Similarity=0.380 Sum_probs=83.7
Q ss_pred EEEEEecCC--ChHHHHHHHHHC-CCeEEEECCCCCCCCcCEEEEcCCCcc--hHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010 2 VVGVLALQG--SFNEHIAALKRL-GVKGVEIRKPDQLQNVSSLIIPGGEST--TMARLAEYHNLFPALREFVKMGKPVWG 76 (215)
Q Consensus 2 ~v~il~~~G--~~~s~~~~l~~~-G~~v~~~~~~~~l~~~d~lil~GG~~~--~~~~l~~~~~l~~~i~~~~~~~~PilG 76 (215)
+|+|+.++. |+. -.+.|+.. ++++.+++..+++.++|.+||||+.++ .+.+++. .++.+.|.++++.+.+++|
T Consensus 253 ~Iav~~lp~isNFt-D~dpL~~~~~v~v~~v~~~~~l~~~dlvIlPGsk~t~~DL~~lr~-~g~d~~i~~~~~~~~~viG 330 (486)
T COG1492 253 RIAVIRLPRISNFT-DFDPLRAEPDVRVRFVKPGSDLRDADLVILPGSKNTIADLKILRE-GGMDEKILEYARKGGDVIG 330 (486)
T ss_pred EEEEecCCCccccc-cchhhhcCCCeEEEEeccCCCCCCCCEEEeCCCcccHHHHHHHHH-cCHHHHHHHHHhCCCCEEE
Confidence 678887755 343 34566655 899999999999999999999999764 3556665 6888999999999999999
Q ss_pred EehHHHHHHHhhccCC-----CCCccccceeeeEEEe
Q 028010 77 TCAGLIFLANKAVGQK-----LGGQELVGGLDCTVHR 108 (215)
Q Consensus 77 IC~G~QlLa~~~~~~~-----~~~~~~lG~~~~~v~~ 108 (215)
||.|+|||++.+-+.. .+..++||++|.+..-
T Consensus 331 ICGG~QmLG~~i~Dp~g~Eg~~~~~~GLgLldv~T~~ 367 (486)
T COG1492 331 ICGGYQMLGRRLKDPSGIEGAKGEAEGLGLLDVETCF 367 (486)
T ss_pred EcchHHhhhhhhcCcccccCcccccCCccceEEEEEe
Confidence 9999999999987631 2246799999988764
No 105
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=99.13 E-value=6.2e-10 Score=111.02 Aligned_cols=86 Identities=28% Similarity=0.287 Sum_probs=66.5
Q ss_pred EEEEEecCCChH--HHHHHHHHCCCeEEEECC-----CCCCCCcCEEEEcCCCcc------h---HHHHHhhCCHHHHHH
Q 028010 2 VVGVLALQGSFN--EHIAALKRLGVKGVEIRK-----PDQLQNVSSLIIPGGEST------T---MARLAEYHNLFPALR 65 (215)
Q Consensus 2 ~v~il~~~G~~~--s~~~~l~~~G~~v~~~~~-----~~~l~~~d~lil~GG~~~------~---~~~l~~~~~l~~~i~ 65 (215)
||+||.++|... +...||+++|+++..+.- ...++++++|+++||++. . ...+..+..+.+.++
T Consensus 931 ~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~ 1010 (1202)
T TIGR01739 931 QVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFLDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLL 1010 (1202)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCchhheEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHH
Confidence 799999999766 578999999998776642 134678999999998642 1 123333456788899
Q ss_pred HHHH-cCCcEEEEeh-HHHHHHHh
Q 028010 66 EFVK-MGKPVWGTCA-GLIFLANK 87 (215)
Q Consensus 66 ~~~~-~~~PilGIC~-G~QlLa~~ 87 (215)
++++ .++++||||- |.|+|++.
T Consensus 1011 ~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 1011 TFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred HHHhCCCceEEEeCcHHHHHHHHc
Confidence 9994 5999999997 99999986
No 106
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=3.1e-09 Score=95.75 Aligned_cols=162 Identities=15% Similarity=0.158 Sum_probs=85.9
Q ss_pred EEEEEecCCChH-HHHHHHHHC-CCe-EEEECCC-------CC---CCCcCEEEEcCCCcchH--HHHHhhCCH-HHHHH
Q 028010 2 VVGVLALQGSFN-EHIAALKRL-GVK-GVEIRKP-------DQ---LQNVSSLIIPGGESTTM--ARLAEYHNL-FPALR 65 (215)
Q Consensus 2 ~v~il~~~G~~~-s~~~~l~~~-G~~-v~~~~~~-------~~---l~~~d~lil~GG~~~~~--~~l~~~~~l-~~~i~ 65 (215)
++..++-.+.|. .+.+.|... |+. |.+++.. +. ...+|+||+..|++..+ +.. +. .+++.
T Consensus 16 ~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~----gI~~rl~~ 91 (767)
T KOG1224|consen 16 RTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADI----GICLRLLL 91 (767)
T ss_pred eEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHH----HHHHHHHH
Confidence 455555556655 456677654 443 3334321 12 23499999855543322 221 11 12222
Q ss_pred HHHHcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeEEEeccCCCcceeeeeecccCcccCCCCCCcceeeeeeeCc
Q 028010 66 EFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAP 145 (215)
Q Consensus 66 ~~~~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~Gw~~~~~~~~~~~~~~~p 145 (215)
.+ +++||||||+|+|.|+-+-|+ .|... ..|..|- +.. ++ ..+.-
T Consensus 92 ~~--~~iPilGICLGfQal~l~hGA--------------~v~~~-------------n~p~HGr--vs~--i~--~~~~~ 136 (767)
T KOG1224|consen 92 EC--RDIPILGICLGFQALGLVHGA--------------HVVHA-------------NEPVHGR--VSG--IE--HDGNI 136 (767)
T ss_pred hc--CCCceeeeehhhHhHhhhccc--------------ceecC-------------CCcccce--eee--EE--ecCcE
Confidence 22 479999999999999988763 22211 1222231 110 00 12445
Q ss_pred eeeecC----CC--eEEEEEeeCCCCccccCCcceeeecccCCCCCceEEEEe--eCCEEEEeeCCccC
Q 028010 146 AVLDVG----PD--VDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR--QGNLLGTAFHPELT 206 (215)
Q Consensus 146 l~~~~~----~~--~~~~Hs~~~~~~~~~~~~~la~s~~~~~~~~~~~~~~~~--~~~v~g~QFHPE~s 206 (215)
+|.+++ .. ...+||..+.+.|-+. ..++++.|. +|+. ..+.+. +-+-||+|||||.-
T Consensus 137 ~f~gi~sg~~~~fK~~RYHSL~in~~pid~-l~il~t~~d--dng~-ilMsi~~~~fPhfG~qyHPES~ 201 (767)
T KOG1224|consen 137 LFSGIPSGRNSDFKVVRYHSLIINSLPIDL-LPILWTIYD--DNGH-ILMSIMHSSFPHFGLQYHPESI 201 (767)
T ss_pred EEccCCCCCcccceeEEeEEEEecCCchhh-hcceeEeec--CCce-EEEEeeccCCCccceeeChHHh
Confidence 666663 23 4567998887666554 334444443 1111 344444 34789999999963
No 107
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=98.90 E-value=1.5e-08 Score=84.49 Aligned_cols=108 Identities=19% Similarity=0.304 Sum_probs=81.2
Q ss_pred EEEEEecCC---ChH----HHHHHHHHCCCeEEEECCCCC----CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHc
Q 028010 2 VVGVLALQG---SFN----EHIAALKRLGVKGVEIRKPDQ----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM 70 (215)
Q Consensus 2 ~v~il~~~G---~~~----s~~~~l~~~G~~v~~~~~~~~----l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~ 70 (215)
||+++-.-. ++. ...++++++|++++.++..++ +.++|+|+++||....+-..-...++.+.|++++++
T Consensus 33 ~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~ 112 (233)
T PRK05282 33 KAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKN 112 (233)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHC
Confidence 677766533 323 466789999999988887666 789999999999875443333347899999999999
Q ss_pred CCcEEEEehHHHHHHHhhccCC------CCCccccceeeeEEEec
Q 028010 71 GKPVWGTCAGLIFLANKAVGQK------LGGQELVGGLDCTVHRN 109 (215)
Q Consensus 71 ~~PilGIC~G~QlLa~~~~~~~------~~~~~~lG~~~~~v~~~ 109 (215)
|+|++|+|+|+.+++..+.... ....++||+++..+..+
T Consensus 113 G~~~~G~SAGAii~~~~i~~~~~~~~~~~~~~~gLglv~~~i~pH 157 (233)
T PRK05282 113 GTPYIGWSAGANVAGPTIRTTNDMPIVDPPSFDALGLFPFQINPH 157 (233)
T ss_pred CCEEEEECHHHHhhhccceecCCCCcccccCCCcccceeeeeccc
Confidence 9999999999999998765321 12256899998766654
No 108
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=98.84 E-value=1.9e-08 Score=79.00 Aligned_cols=84 Identities=27% Similarity=0.411 Sum_probs=63.8
Q ss_pred EEEEEecCCChH----HHHHHHHHCCCeEEEECCC------------------CCCC--CcCEEEEcCCCcchHHHHHhh
Q 028010 2 VVGVLALQGSFN----EHIAALKRLGVKGVEIRKP------------------DQLQ--NVSSLIIPGGESTTMARLAEY 57 (215)
Q Consensus 2 ~v~il~~~G~~~----s~~~~l~~~G~~v~~~~~~------------------~~l~--~~d~lil~GG~~~~~~~l~~~ 57 (215)
||+||.++|... ...+.|++.|+++.++... ++++ ++|+|++|||... ..+..+
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~--~~~~~~ 78 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAP--EYLRLN 78 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCH--HHhccC
Confidence 689999988533 5678899999988776421 1122 5899999998642 223233
Q ss_pred CCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 58 HNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 58 ~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
..+.++|+++.++++|+.+||.|.++|+++
T Consensus 79 ~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 79 NKAVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 457899999999999999999999999986
No 109
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=98.83 E-value=1.1e-08 Score=84.36 Aligned_cols=74 Identities=22% Similarity=0.391 Sum_probs=48.8
Q ss_pred HHHHHHHHCCCeEEEECC--CCC-----CCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcC--CcEEEEehHHH
Q 028010 14 EHIAALKRLGVKGVEIRK--PDQ-----LQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMG--KPVWGTCAGLI 82 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~--~~~-----l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~--~PilGIC~G~Q 82 (215)
|+++.++..|++|+.+.. +++ ++..++||++||-. ..+-.+.+ .......+..++| .|+.|||+|+.
T Consensus 81 SYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~vvk--kifnk~le~nDaGehFPvyg~CLGFE 158 (340)
T KOG1559|consen 81 SYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFEVVK--KIFNKVLERNDAGEHFPVYGICLGFE 158 (340)
T ss_pred HHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHHHHH--HHHHHHHhccCCccccchhhhhhhHH
Confidence 678888999999887653 332 35689999999943 22223321 1122222223333 89999999999
Q ss_pred HHHHhhc
Q 028010 83 FLANKAV 89 (215)
Q Consensus 83 lLa~~~~ 89 (215)
+|...+.
T Consensus 159 ~lsmiIS 165 (340)
T KOG1559|consen 159 LLSMIIS 165 (340)
T ss_pred HHHHHHh
Confidence 9998875
No 110
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=98.75 E-value=4.4e-07 Score=80.12 Aligned_cols=106 Identities=20% Similarity=0.297 Sum_probs=69.7
Q ss_pred CEEEEEecCCC----hHHHHHHHHHC---CCeEEEECC----CCC-CCCcCEEEEcCCCcchHH-HHHhhCCHHHHHHHH
Q 028010 1 MVVGVLALQGS----FNEHIAALKRL---GVKGVEIRK----PDQ-LQNVSSLIIPGGESTTMA-RLAEYHNLFPALREF 67 (215)
Q Consensus 1 m~v~il~~~G~----~~s~~~~l~~~---G~~v~~~~~----~~~-l~~~d~lil~GG~~~~~~-~l~~~~~l~~~i~~~ 67 (215)
|+|.|..=.|. ....+..|++. .+.|..+.. .+. ..+++.||+|||.+..+. .|. ..-.+.||++
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~--~~g~~~Ir~f 78 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADELLNEPWQSKCALLVMPGGADLPYCRSLN--GEGNRRIRQF 78 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHHhhcCccccCCcEEEECCCcchHHHHhhC--hHHHHHHHHH
Confidence 78888887773 33455666653 356666652 122 357999999999765433 232 1235789999
Q ss_pred HHcCCcEEEEehHHHHHHHhhccC--CC----CCccccceeeeEEEe
Q 028010 68 VKMGKPVWGTCAGLIFLANKAVGQ--KL----GGQELVGGLDCTVHR 108 (215)
Q Consensus 68 ~~~~~PilGIC~G~QlLa~~~~~~--~~----~~~~~lG~~~~~v~~ 108 (215)
+++|.-.||||+|..+-+....-. .+ .+...|++++|....
T Consensus 79 V~~GG~YlGiCAGaY~as~~~ef~~g~p~lev~g~ReL~ffpG~~rG 125 (367)
T PF09825_consen 79 VENGGGYLGICAGAYYASSRCEFEVGNPKLEVVGPRELAFFPGIARG 125 (367)
T ss_pred HHcCCcEEEECcchhhhcceeEeccCCcceEeecCcccccccCCccC
Confidence 999999999999999887764211 10 123458888876554
No 111
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=98.75 E-value=6.7e-08 Score=79.81 Aligned_cols=87 Identities=24% Similarity=0.372 Sum_probs=64.2
Q ss_pred EEEEEec-----CCC----hHHHHHHHHHCCCeEEEECCC---------------------------------C-----C
Q 028010 2 VVGVLAL-----QGS----FNEHIAALKRLGVKGVEIRKP---------------------------------D-----Q 34 (215)
Q Consensus 2 ~v~il~~-----~G~----~~s~~~~l~~~G~~v~~~~~~---------------------------------~-----~ 34 (215)
||+|+.- +|. +.....+|++.|++++++.+. . +
T Consensus 3 kVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ 82 (217)
T PRK11780 3 KIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEAD 82 (217)
T ss_pred EEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCC
Confidence 8998875 563 334678999999988775420 0 1
Q ss_pred CCCcCEEEEcCCCcch--H-------HHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010 35 LQNVSSLIIPGGESTT--M-------ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (215)
Q Consensus 35 l~~~d~lil~GG~~~~--~-------~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~ 88 (215)
.++||+|++|||.... + +.++.+..+.++++++.++|||+.+||.|.++|+.++
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 2469999999996421 1 1223345678999999999999999999999999876
No 112
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=98.74 E-value=4.9e-08 Score=76.58 Aligned_cols=84 Identities=26% Similarity=0.445 Sum_probs=63.3
Q ss_pred EEEEEecCCC----hHHHHHHHHHCCCeEEEECCC-C-------------------CC--CCcCEEEEcCCCcchHHHHH
Q 028010 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP-D-------------------QL--QNVSSLIIPGGESTTMARLA 55 (215)
Q Consensus 2 ~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~-~-------------------~l--~~~d~lil~GG~~~~~~~l~ 55 (215)
||+||.++|- +....+.|+..|++++++... . +. .++|+|++|||... ..+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~--~~~~ 78 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNP--DKLR 78 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCCh--hhhc
Confidence 6899999884 334578899999988776422 1 11 25799999999632 2233
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 56 ~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
.+..+.++|+++.++++++.+||.|.++|+++
T Consensus 79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 79 RDPDAVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 33457899999999999999999999999986
No 113
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=98.72 E-value=1.3e-07 Score=72.44 Aligned_cols=86 Identities=24% Similarity=0.308 Sum_probs=65.7
Q ss_pred CEEEEEecCCC----hHHHHHHHHHCCCeEEEECCC------------------CCC--CCcCEEEEcCCCcchHHHHHh
Q 028010 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE 56 (215)
Q Consensus 1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~------------------~~l--~~~d~lil~GG~~~~~~~l~~ 56 (215)
+||+||.++|. +....+.|+..|+++.++... ++. .++|+|++|||.... ..+..
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~-~~~~~ 80 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAA-FALAP 80 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCH-HHHcc
Confidence 58999999994 335678899999998876421 122 258999999986532 12223
Q ss_pred hCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 57 ~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
+..+.++|+++.++++|+.+||.|..+|+++
T Consensus 81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred ChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 3567899999999999999999999999986
No 114
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.71 E-value=8.4e-08 Score=76.60 Aligned_cols=84 Identities=24% Similarity=0.357 Sum_probs=62.4
Q ss_pred EEEEEecCCC----hHHHHHHHHHCCCeEEEECCC----------------------------------CCC--CCcCEE
Q 028010 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP----------------------------------DQL--QNVSSL 41 (215)
Q Consensus 2 ~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~----------------------------------~~l--~~~d~l 41 (215)
||+|+.++|. +....+.|++.|++++++... +++ .++|+|
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 80 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL 80 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence 6899998884 334678899999888776421 011 257999
Q ss_pred EEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 42 IIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 42 il~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
++|||.... .+..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus 81 iv~GG~~~~--~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 81 VIPGGRAPE--YLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred EEcCCCChh--hhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 999996421 22222456789999999999999999999999986
No 115
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=98.66 E-value=8.8e-08 Score=71.11 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=53.3
Q ss_pred EEEEecCCChH----HHHHHHHHCCCeEEEECCC----CCC-CCcCEEEEcCC-CcchHHHHHhhCCHHHHHHHHHHcCC
Q 028010 3 VGVLALQGSFN----EHIAALKRLGVKGVEIRKP----DQL-QNVSSLIIPGG-ESTTMARLAEYHNLFPALREFVKMGK 72 (215)
Q Consensus 3 v~il~~~G~~~----s~~~~l~~~G~~v~~~~~~----~~l-~~~d~lil~GG-~~~~~~~l~~~~~l~~~i~~~~~~~~ 72 (215)
|+|.+=.|.-. .+.+.|+..- ++..++.. ..+ .++|.||+||| +...|..|.. .+ .+.|++++++|+
T Consensus 2 v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~I~~~~~~~~ad~lVlPGGa~~~~~~~L~~-~g-~~~i~~~v~~g~ 78 (114)
T cd03144 2 VLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADELAVGPWESKTALLVVPGGADLPYCRALNG-KG-NRRIRNFVRNGG 78 (114)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHHHhcCchhhCCCEEEECCCChHHHHHHHHh-hC-cHHHHHHHHCCC
Confidence 56666555322 3344444322 44444321 222 48999999997 4567777866 45 889999999999
Q ss_pred cEEEEehHHHHH
Q 028010 73 PVWGTCAGLIFL 84 (215)
Q Consensus 73 PilGIC~G~QlL 84 (215)
|+||||+|+-+.
T Consensus 79 p~LGIClGAy~a 90 (114)
T cd03144 79 NYLGICAGAYLA 90 (114)
T ss_pred cEEEEecCccce
Confidence 999999998875
No 116
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.65 E-value=2e-07 Score=65.90 Aligned_cols=81 Identities=31% Similarity=0.476 Sum_probs=60.4
Q ss_pred EEEEecCCCh----HHHHHHHHHCCCeEEEECCCC-------CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcC
Q 028010 3 VGVLALQGSF----NEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG 71 (215)
Q Consensus 3 v~il~~~G~~----~s~~~~l~~~G~~v~~~~~~~-------~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~ 71 (215)
|+|+..++.. ....+.|+..++++.++.... ...++|+|++|||........ .+..+.+.+++..+++
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~-~~~~~~~~i~~~~~~~ 79 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-RDEALLALLREAAAAG 79 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhc-cCHHHHHHHHHHHHcC
Confidence 4566666654 467889999999999887543 256899999999865432111 1134578888988889
Q ss_pred CcEEEEehHHHHH
Q 028010 72 KPVWGTCAGLIFL 84 (215)
Q Consensus 72 ~PilGIC~G~QlL 84 (215)
+|++|+|.|+|++
T Consensus 80 ~~i~~~c~g~~~l 92 (115)
T cd01653 80 KPILGICLGAQLL 92 (115)
T ss_pred CEEEEECchhHhH
Confidence 9999999999999
No 117
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=98.60 E-value=3e-07 Score=73.82 Aligned_cols=87 Identities=25% Similarity=0.396 Sum_probs=64.9
Q ss_pred CEEEEEecCCC----hHHHHHHHHHCCCeEEEECCC---------------------CCC--CCcCEEEEcCCCcchHHH
Q 028010 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP---------------------DQL--QNVSSLIIPGGESTTMAR 53 (215)
Q Consensus 1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~---------------------~~l--~~~d~lil~GG~~~~~~~ 53 (215)
|||+|+..+|. +....+.|++.|.++.++... +++ ++||+|++|||....+..
T Consensus 3 ~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~ 82 (188)
T COG0693 3 KKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYL 82 (188)
T ss_pred ceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhc
Confidence 48999999884 445678999999876554211 123 389999999994332222
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (215)
Q Consensus 54 l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~ 88 (215)
..+ ..+.++++++.+.++|+.+||.|.++|+.+.
T Consensus 83 ~~~-~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 83 RPD-PDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred cCc-HHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 221 4678999999999999999999999999873
No 118
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=98.52 E-value=6e-07 Score=69.95 Aligned_cols=84 Identities=26% Similarity=0.414 Sum_probs=62.7
Q ss_pred EEEEecCCC----hHHHHHHHHHCCCeEEEECCC-------------------CCC--CCcCEEEEcCCCcchHHHHHhh
Q 028010 3 VGVLALQGS----FNEHIAALKRLGVKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMARLAEY 57 (215)
Q Consensus 3 v~il~~~G~----~~s~~~~l~~~G~~v~~~~~~-------------------~~l--~~~d~lil~GG~~~~~~~l~~~ 57 (215)
|+||.++|. +....+.|+..|+++.++... ++. .++|.|++|||.... ..+..+
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~-~~~~~~ 79 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGA-QNLADN 79 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchH-HHHHhC
Confidence 578888884 335678899999887765321 122 479999999986322 223333
Q ss_pred CCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 58 HNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 58 ~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
..+.++|+++.++++++.+||.|..+|+++
T Consensus 80 ~~l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 80 EKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 567899999999999999999999999987
No 119
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.50 E-value=3.5e-07 Score=73.01 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=35.3
Q ss_pred CCCcCEEEEcCCCcchHH-----HHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhcc
Q 028010 35 LQNVSSLIIPGGESTTMA-----RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG 90 (215)
Q Consensus 35 l~~~d~lil~GG~~~~~~-----~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~ 90 (215)
..++||+|++|++-..++ .......+.++.+ ++.+|+|++|.|+|+....+++
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~---~~v~stl~iCWgaqaal~~~yG 117 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAK---THVTSTLFSCWAAMAALYYFYG 117 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHH---HhCcchHHHHHHHHHHHHHHcC
Confidence 357999999998643211 1111122344444 3689999999999999888864
No 120
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.48 E-value=5.3e-07 Score=60.98 Aligned_cols=80 Identities=33% Similarity=0.467 Sum_probs=57.0
Q ss_pred EEEecCCCh----HHHHHHHHHCCCeEEEECCCC-------CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCC
Q 028010 4 GVLALQGSF----NEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK 72 (215)
Q Consensus 4 ~il~~~G~~----~s~~~~l~~~G~~v~~~~~~~-------~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~ 72 (215)
+++...+.. ....+.+++.++++.++.... ...++|+||+|||........ ++....+++++..++++
T Consensus 2 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (92)
T cd03128 2 AVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-WDEALLALLREAAAAGK 80 (92)
T ss_pred EEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc-cCHHHHHHHHHHHHcCC
Confidence 455554433 467889999999888876432 256899999999865432211 12345678888888899
Q ss_pred cEEEEehHHHHH
Q 028010 73 PVWGTCAGLIFL 84 (215)
Q Consensus 73 PilGIC~G~QlL 84 (215)
|++|+|.|+|++
T Consensus 81 ~i~~~~~g~~~~ 92 (92)
T cd03128 81 PVLGICLGAQLL 92 (92)
T ss_pred EEEEEecccccC
Confidence 999999999874
No 121
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=98.48 E-value=7.2e-07 Score=70.78 Aligned_cols=85 Identities=25% Similarity=0.343 Sum_probs=62.1
Q ss_pred EEEEEecCCC----hHHHHHHHHHCCCeEEE--ECC----C---------------CC--CCCcCEEEEcCCCcchHHHH
Q 028010 2 VVGVLALQGS----FNEHIAALKRLGVKGVE--IRK----P---------------DQ--LQNVSSLIIPGGESTTMARL 54 (215)
Q Consensus 2 ~v~il~~~G~----~~s~~~~l~~~G~~v~~--~~~----~---------------~~--l~~~d~lil~GG~~~~~~~l 54 (215)
||+||.++|. +....+.|+..|.++++ +.. + ++ ..++|.|++|||.... ..+
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~-~~~ 79 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGA-ENL 79 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHH-HHH
Confidence 6999999994 33567888888876653 321 1 01 3469999999985321 222
Q ss_pred HhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 55 ~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
..+..+.++|+++.++++++.+||.|..+|+++
T Consensus 80 ~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 80 RNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred hhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 223457899999999999999999999999997
No 122
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.42 E-value=9.4e-07 Score=75.74 Aligned_cols=168 Identities=18% Similarity=0.165 Sum_probs=79.3
Q ss_pred CEEEEEecCCChHHHHHHH-HHCC-----CeEEEECCC-------------------CCC--CCcCEEEEcCCCcchHH-
Q 028010 1 MVVGVLALQGSFNEHIAAL-KRLG-----VKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMA- 52 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l-~~~G-----~~v~~~~~~-------------------~~l--~~~d~lil~GG~~~~~~- 52 (215)
+||+||++.-+-......| +-++ ++++.+... +++ ..+||+||+|.+-..++
T Consensus 35 L~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l~F 114 (298)
T PF04204_consen 35 LKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQLPF 114 (298)
T ss_dssp EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS-G
T ss_pred eEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCCCc
Confidence 3899999988877655433 3333 344444321 123 47999999998543221
Q ss_pred -HHHhhCCHHHHHHHHH-HcCCcEEEEehHHHH-HHHhhccCCC-CCccccceeeeEEEeccCCCcceeeeeecccCccc
Q 028010 53 -RLAEYHNLFPALREFV-KMGKPVWGTCAGLIF-LANKAVGQKL-GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA 128 (215)
Q Consensus 53 -~l~~~~~l~~~i~~~~-~~~~PilGIC~G~Ql-La~~~~~~~~-~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~G 128 (215)
...-=..+.+.+ ++. +.-.+.|.||.|+|. |-...|-... -..+..|+.+.++.
T Consensus 115 e~V~YW~El~~i~-dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfGVf~~~~~--------------------- 172 (298)
T PF04204_consen 115 EEVDYWDELTEIF-DWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKLFGVFEHRVL--------------------- 172 (298)
T ss_dssp GGSTTHHHHHHHH-HHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEEEEEEEES---------------------
T ss_pred ccCCcHHHHHHHH-HHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCcceeceeeecc---------------------
Confidence 110001122222 333 357899999999999 4444442100 00112222221111
Q ss_pred CCCCCCcceeeeeeeCceeeecCCCeEEEEEeeCCCC------ccccCCcceeeecccCCCCCceEEEEeeCCEEEEeeC
Q 028010 129 SQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSN------KVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFH 202 (215)
Q Consensus 129 w~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~~~~------~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFH 202 (215)
..++||++|+...|+.=||-+.... .+.. .++|.|+.. -..+..-..++-+=+|-|
T Consensus 173 ------------~~~~pLl~Gfdd~f~~PhSR~t~i~~~~i~~~~~L-~vLa~s~~~-----G~~l~~~~d~r~vfi~GH 234 (298)
T PF04204_consen 173 ------------DPDHPLLRGFDDTFFAPHSRYTEIDRDDIKKAPGL-EVLAESEEA-----GVFLVASKDGRQVFITGH 234 (298)
T ss_dssp -------------SS-GGGTT--SEEEEEEEEEEE--HHHHCT-TTE-EEEEEETTT-----EEEEEEECCCTEEEE-S-
T ss_pred ------------CCCChhhcCCCccccCCcccccCCCHHHHhcCCCc-EEEeccCCc-----ceEEEEcCCCCEEEEeCC
Confidence 0267899999888888888544221 1112 578888754 133444456788889999
Q ss_pred CccCCC
Q 028010 203 PELTAD 208 (215)
Q Consensus 203 PE~s~~ 208 (215)
||.+.+
T Consensus 235 ~EYd~~ 240 (298)
T PF04204_consen 235 PEYDAD 240 (298)
T ss_dssp TT--TT
T ss_pred CccChh
Confidence 998765
No 123
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=98.42 E-value=2.7e-06 Score=68.73 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=61.6
Q ss_pred CEEEEEecCCC----hHHHHHHHHHCCCeEEEECC------C---------------CCC--CCcCEEEEcCCCcchHHH
Q 028010 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRK------P---------------DQL--QNVSSLIIPGGESTTMAR 53 (215)
Q Consensus 1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~------~---------------~~l--~~~d~lil~GG~~~~~~~ 53 (215)
|||.||.++|. +....+.|++.|+++.++.. + +++ +++|.|++|||.... ..
T Consensus 3 ~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~-~~ 81 (196)
T PRK11574 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGA-EC 81 (196)
T ss_pred ceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchh-hh
Confidence 49999999884 44577889999987766421 0 112 368999999986422 12
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHH
Q 028010 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN 86 (215)
Q Consensus 54 l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~ 86 (215)
+..+..+.++|+++.++++++.+||.|..+|..
T Consensus 82 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 82 FRDSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 222234789999999999999999999987554
No 124
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=98.37 E-value=3.7e-06 Score=68.85 Aligned_cols=107 Identities=22% Similarity=0.211 Sum_probs=75.0
Q ss_pred EEEEEecCC-----ChHHHHHHHHHCCCeEEEECCC---------CCCCCcCEEEEcCCCcc-hHHHHHhhCCHHHHHHH
Q 028010 2 VVGVLALQG-----SFNEHIAALKRLGVKGVEIRKP---------DQLQNVSSLIIPGGEST-TMARLAEYHNLFPALRE 66 (215)
Q Consensus 2 ~v~il~~~G-----~~~s~~~~l~~~G~~v~~~~~~---------~~l~~~d~lil~GG~~~-~~~~l~~~~~l~~~i~~ 66 (215)
||+++.... ......++++++|++++.+... +.+.++|+|+++||... .+..+.. .++.+.|++
T Consensus 31 ~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~-t~~~~~i~~ 109 (210)
T cd03129 31 RVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRE-TPLLDAILK 109 (210)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHh-CChHHHHHH
Confidence 677776543 2335678999999987654321 23578999999999764 3445543 457777778
Q ss_pred HHHcCCcEEEEehHHHHHHHh-hc-cCCCC-----CccccceeeeEEEec
Q 028010 67 FVKMGKPVWGTCAGLIFLANK-AV-GQKLG-----GQELVGGLDCTVHRN 109 (215)
Q Consensus 67 ~~~~~~PilGIC~G~QlLa~~-~~-~~~~~-----~~~~lG~~~~~v~~~ 109 (215)
.+++|+|+.|+|+|+.+++.. .. ..... ...+||+++..+..|
T Consensus 110 ~~~~G~v~~G~SAGA~~~~~~~~~~~~~~~~~~~~~~~GLgl~~~~i~pH 159 (210)
T cd03129 110 RVARGVVIGGTSAGAAVMGETGIGTTPSEPEVTPPMAPGLGLLPGIIDPH 159 (210)
T ss_pred HHHcCCeEEEcCHHHHHhhhccccCCCCccccccccccCCCCcceeECCC
Confidence 777999999999999999995 22 22111 356899997777665
No 125
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=98.33 E-value=2.1e-06 Score=71.60 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=42.4
Q ss_pred CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 36 ~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
++||+|++|||.... ..+..+..+.++|+++.+++||+.+||.|.++|+.+
T Consensus 93 ~dYDav~iPGG~g~~-~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 93 DDYGIFFVAGGHGTL-FDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hhCcEEEECCCCchh-hhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 479999999996532 344455567899999999999999999999999986
No 126
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.33 E-value=2.1e-06 Score=68.59 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=60.5
Q ss_pred EEEEecCCC----hHHHHHHHHHCC-------CeEEEECCC------------------CCCCCcCEEEEcCCCcchHHH
Q 028010 3 VGVLALQGS----FNEHIAALKRLG-------VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMAR 53 (215)
Q Consensus 3 v~il~~~G~----~~s~~~~l~~~G-------~~v~~~~~~------------------~~l~~~d~lil~GG~~~~~~~ 53 (215)
|+||.++|. +....+.|+.++ +++.++... ++..++|.|++|||.... .
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~g~~v~~d~~~~~~~~~D~liipGg~~~~--~ 78 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGGPVRSSSGLSLVADAGLDALAAADTVIVPGGPDVD--G 78 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCCceeecCCcEEEcCcCccccCCCCEEEECCCcccc--c
Confidence 578888884 335677787766 666665421 134579999999985432 1
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 54 l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
+..++.+.++|+++.++++++.+||.|.++|+++
T Consensus 79 ~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 79 RPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred ccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 2233457899999999999999999999999987
No 127
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=98.32 E-value=3e-06 Score=69.78 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=56.1
Q ss_pred HHHHHHHHCCCeEEEECCC---------------------------------CC-----CCCcCEEEEcCCCcc--hHHH
Q 028010 14 EHIAALKRLGVKGVEIRKP---------------------------------DQ-----LQNVSSLIIPGGEST--TMAR 53 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~---------------------------------~~-----l~~~d~lil~GG~~~--~~~~ 53 (215)
...+.|++.|++++++... .. +++||+|++|||.+. .+..
T Consensus 21 ~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D 100 (213)
T cd03133 21 LTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSD 100 (213)
T ss_pred HHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhh
Confidence 4578999999998875430 01 236999999999642 1211
Q ss_pred HH-------hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhc
Q 028010 54 LA-------EYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV 89 (215)
Q Consensus 54 l~-------~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~ 89 (215)
+. .+..+.++++++.++|||+.+||.|.++|+.+.+
T Consensus 101 ~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 101 FAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred hcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 11 2345788999999999999999999999998753
No 128
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.31 E-value=4.8e-06 Score=67.06 Aligned_cols=53 Identities=26% Similarity=0.370 Sum_probs=41.6
Q ss_pred CCCcCEEEEcCCCcchHH-HHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 35 LQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 35 l~~~d~lil~GG~~~~~~-~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
.+++|.|+||||...... .+..+..+.++|+++.++++++.+||.|..+|+++
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 457999999997543211 23333567899999999999999999999999986
No 129
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.29 E-value=1.9e-06 Score=68.12 Aligned_cols=82 Identities=28% Similarity=0.375 Sum_probs=58.2
Q ss_pred EEEEecCCC----hHHHHHHHHHC-CCeEEEECCC------------------CCC--CCcCEEEEcCCCcchHHHHHhh
Q 028010 3 VGVLALQGS----FNEHIAALKRL-GVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAEY 57 (215)
Q Consensus 3 v~il~~~G~----~~s~~~~l~~~-G~~v~~~~~~------------------~~l--~~~d~lil~GG~~~~~~~l~~~ 57 (215)
|+|+.++|- +......|++. ++++.++... +++ .++|.|++|||...... .+
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~~---~~ 77 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDNP---EA 77 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCcccccC---Cc
Confidence 467777773 33456777775 6777665321 123 46899999999642211 22
Q ss_pred CCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 58 HNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 58 ~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
+.+.++|+++.++++++.+||.|.++|+++
T Consensus 78 ~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 78 PDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 456889999999999999999999999997
No 130
>PRK11249 katE hydroperoxidase II; Provisional
Probab=98.23 E-value=6.4e-06 Score=78.60 Aligned_cols=86 Identities=24% Similarity=0.181 Sum_probs=66.1
Q ss_pred CEEEEEecCCCh----HHHHHHHHHCCCeEEEECCC------------------CCC--CCcCEEEEcCCCcchHHHHHh
Q 028010 1 MVVGVLALQGSF----NEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE 56 (215)
Q Consensus 1 m~v~il~~~G~~----~s~~~~l~~~G~~v~~~~~~------------------~~l--~~~d~lil~GG~~~~~~~l~~ 56 (215)
+||+||..+|.. ..+.++|+..|+.+.++... ++. ..+|+|+||||.... ..+..
T Consensus 598 RKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~-~~L~~ 676 (752)
T PRK11249 598 RKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANI-ADLAD 676 (752)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhH-HHHhh
Confidence 589999999953 35678999999988876431 111 258999999986432 23433
Q ss_pred hCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 57 ~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
+..+.++|+++.+.+|+|.+||.|.++|+.+
T Consensus 677 d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 677 NGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred CHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 3457899999999999999999999999986
No 131
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=98.21 E-value=5e-06 Score=66.45 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=57.0
Q ss_pred EEEEecCCChH----HHHHHHHHCC-------CeEEEECCC------------------CCCCCcCEEEEcCCCcchHHH
Q 028010 3 VGVLALQGSFN----EHIAALKRLG-------VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMAR 53 (215)
Q Consensus 3 v~il~~~G~~~----s~~~~l~~~G-------~~v~~~~~~------------------~~l~~~d~lil~GG~~~~~~~ 53 (215)
|+|+.++|... ...+.|+..+ ++++++... .+..++|.|++|||....
T Consensus 1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~liipgg~~~~--- 77 (185)
T cd03136 1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGAPVTSSNGLRVAPDAALEDAPPLDYLFVVGGLGAR--- 77 (185)
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCCeeecCCCcEEeCCccccccCCCCEEEEeCCCCcc---
Confidence 67888888543 2345554432 455554311 133579999999985432
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 54 l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
+..+..+.++|+++.++++.+.++|.|..+|+++
T Consensus 78 ~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 78 RAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 2233457899999999999999999999999986
No 132
>PRK04155 chaperone protein HchA; Provisional
Probab=98.18 E-value=1e-05 Score=69.50 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=43.3
Q ss_pred CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 35 l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
.++||+|+||||... +..+..+..+.++|+.+.+++|||.+||.|.++|..+
T Consensus 145 ~~dYDaV~iPGG~g~-~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 145 DSDYAAVFIPGGHGA-LIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred cccccEEEECCCCch-HHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 357999999999654 3456666678899999999999999999999988774
No 133
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.17 E-value=5.5e-06 Score=65.87 Aligned_cols=83 Identities=23% Similarity=0.363 Sum_probs=61.4
Q ss_pred EEEEecCCC----hHHHHHHHHHCC-----CeEEEECCC------------------CCCCCcCEEEEcCCCcchHHHHH
Q 028010 3 VGVLALQGS----FNEHIAALKRLG-----VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMARLA 55 (215)
Q Consensus 3 v~il~~~G~----~~s~~~~l~~~G-----~~v~~~~~~------------------~~l~~~d~lil~GG~~~~~~~l~ 55 (215)
|+||.++|. +....+.|+..+ +++.++... ++...+|.|++|||.... .+.
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg~~~~--~~~ 78 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFADPPDLDVLLVPGGGGTR--ALV 78 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCCceEeCCCCEEcCCcccccCCCCCEEEECCCcchh--hhc
Confidence 578888873 445678888887 887776421 123479999999985422 233
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 56 ~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
.+..+.++|+++.++++++.++|.|..+|+++
T Consensus 79 ~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 79 NDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred cCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 33457899999999999999999999999886
No 134
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=98.10 E-value=1.2e-05 Score=67.09 Aligned_cols=51 Identities=22% Similarity=0.366 Sum_probs=42.2
Q ss_pred CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 36 ~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
++||+|++|||... +..+..+..+.+.++++.++|||+..||.|.+.|..+
T Consensus 95 ~dYDav~iPGG~g~-~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGA-LIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCC-hhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 47999999999653 3345555667899999999999999999999988775
No 135
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=98.06 E-value=1.6e-05 Score=67.98 Aligned_cols=166 Identities=14% Similarity=0.030 Sum_probs=88.6
Q ss_pred CEEEEEecCCChHHHHH----HHHHCCC--eEEEECCC-------------------CCC--CCcCEEEEcCCCcchHH-
Q 028010 1 MVVGVLALQGSFNEHIA----ALKRLGV--KGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMA- 52 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~----~l~~~G~--~v~~~~~~-------------------~~l--~~~d~lil~GG~~~~~~- 52 (215)
+||+||++.-+-..... .|..... +++.+... +++ ..+||+||+|.+-..++
T Consensus 36 L~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~l~F 115 (300)
T TIGR01001 36 LEILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVELVPF 115 (300)
T ss_pred eeEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCCCCc
Confidence 48999999777665433 3333333 34443211 122 46999999998532211
Q ss_pred -HH-HhhCCHHHHHHHHHH-cCCcEEEEehHHHHHHHhhcc-CCC-CCccccceeeeEEEeccCCCcceeeeeecccCcc
Q 028010 53 -RL-AEYHNLFPALREFVK-MGKPVWGTCAGLIFLANKAVG-QKL-GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPAL 127 (215)
Q Consensus 53 -~l-~~~~~l~~~i~~~~~-~~~PilGIC~G~QlLa~~~~~-~~~-~~~~~lG~~~~~v~~~~~~~~~~~~~~~~~~p~~ 127 (215)
.. -| ..+.+ |-++.+ .-...|.||.|+|.-....-+ ... -..+..|+++ +
T Consensus 116 eeV~YW-~El~~-I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfGVf~----------------------h- 170 (300)
T TIGR01001 116 EDVAYW-EELTE-IMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKLSGVYK----------------------H- 170 (300)
T ss_pred ccCCcH-HHHHH-HHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCceEEeec----------------------C-
Confidence 00 01 11122 233333 567899999999985555432 100 0011112111 1
Q ss_pred cCCCCCCcceeeeeeeCceeeecCCCeEEEEEeeCCCC------ccccCCcceeeecccCCCCCceEEEEeeCCEEEEee
Q 028010 128 ASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSN------KVLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAF 201 (215)
Q Consensus 128 Gw~~~~~~~~~~~~~~~pl~~~~~~~~~~~Hs~~~~~~------~~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QF 201 (215)
.+. ..+||++|+...|+.=||-+.... .++. .++|.|+.. -..+.+-..++-+=++-
T Consensus 171 ---~~~--------~~~pL~rGfdd~f~~PhSR~t~i~~~~i~~~~~L-~vla~s~e~-----G~~l~~s~d~r~vfi~G 233 (300)
T TIGR01001 171 ---DIA--------PDSLLLRGFDDFFLAPHSRYADFDAEDIDKVTDL-EILAESDEA-----GVYLAANKDERNIFVTG 233 (300)
T ss_pred ---ccC--------CCCccccCCCCccccCCCCCCCCCHHHHhcCCCC-eEEecCCCc-----ceEEEEcCCCCEEEEcC
Confidence 011 267899999888888888644322 1122 467777643 12333334446666999
Q ss_pred CCccCCC
Q 028010 202 HPELTAD 208 (215)
Q Consensus 202 HPE~s~~ 208 (215)
|||-+.+
T Consensus 234 H~EYd~~ 240 (300)
T TIGR01001 234 HPEYDAY 240 (300)
T ss_pred CCccChh
Confidence 9998764
No 136
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=97.97 E-value=5e-06 Score=64.22 Aligned_cols=51 Identities=33% Similarity=0.647 Sum_probs=39.9
Q ss_pred CCcCEEEEcCCCcchHHHHH-hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 36 QNVSSLIIPGGESTTMARLA-EYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 36 ~~~d~lil~GG~~~~~~~l~-~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
.+||+||+|||.... ..+. .+..+.++++++.+++||+.+||.|..+|+.+
T Consensus 36 ~~yDalilpGG~~~~-~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 36 SDYDALILPGGHGGA-DDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGESEEEEE-BTHHH-HHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred hhCCEEEECCCCchh-hhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 469999999997633 3444 22467899999999999999999999999987
No 137
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=97.93 E-value=3.9e-05 Score=66.72 Aligned_cols=83 Identities=23% Similarity=0.320 Sum_probs=57.3
Q ss_pred EEEEEecCCC----hHHHHHHHHHC----C---CeEEEECC------------------CCCCCCcCEEEEcCCCcchHH
Q 028010 2 VVGVLALQGS----FNEHIAALKRL----G---VKGVEIRK------------------PDQLQNVSSLIIPGGESTTMA 52 (215)
Q Consensus 2 ~v~il~~~G~----~~s~~~~l~~~----G---~~v~~~~~------------------~~~l~~~d~lil~GG~~~~~~ 52 (215)
+|+|+.++|. +....+.|+.. + ++++++.. .++.+++|.||+|||......
T Consensus 11 ~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~~v~ss~g~~i~~d~~~~~~~~~D~livpGg~~~~~~ 90 (322)
T PRK09393 11 LVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPGPLRAAGGITVVADGGLELLDRADTIVIPGWRGPDAP 90 (322)
T ss_pred EEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCCceEeCCCcEEeCCCCccccCCCCEEEECCCCccccc
Confidence 8999999994 22345555322 1 24444321 123567999999998542211
Q ss_pred HHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 53 ~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
.+..+.++|++..++++++.+||.|..+|+++
T Consensus 91 ---~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 91 ---VPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred ---CCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 22457899999999999999999999999987
No 138
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=97.93 E-value=2.8e-05 Score=64.31 Aligned_cols=52 Identities=33% Similarity=0.496 Sum_probs=41.0
Q ss_pred CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (215)
Q Consensus 36 ~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~ 88 (215)
+++|+|+||||.... ..+..+..+.++|+++.++++++.+||.|..+|+.+-
T Consensus 89 ~~~dal~ipGG~~~~-~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag 140 (221)
T cd03141 89 SDYDAIFIPGGHGPM-FDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVK 140 (221)
T ss_pred hHceEEEECCCcccc-cccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhcc
Confidence 368999999986432 1232334578999999999999999999999999863
No 139
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=97.85 E-value=3.7e-05 Score=59.98 Aligned_cols=95 Identities=21% Similarity=0.331 Sum_probs=65.2
Q ss_pred HHHHHHHHCCCeEEEECCCC--------CCCCcCEEEEcCCCcc-hHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHH
Q 028010 14 EHIAALKRLGVKGVEIRKPD--------QLQNVSSLIIPGGEST-TMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL 84 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~--------~l~~~d~lil~GG~~~-~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlL 84 (215)
...++|+++|++++.++..+ .+.++|+|++.||... .+..++. .++.+.|++++++|+++.|+-+|+.++
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~-t~l~~~i~~~~~~G~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKE-TGLDEAIREAYRKGGVIIGTSAGAMIL 82 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHH-TTHHHHHHHHHHTTSEEEEETHHHHCT
T ss_pred HHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHh-CCHHHHHHHHHHCCCEEEEEChHHhhc
Confidence 46789999999988876543 2457999999999764 3555654 789999999999999999999999988
Q ss_pred HHhhccCC--C----CCccccceeeeEEEec
Q 028010 85 ANKAVGQK--L----GGQELVGGLDCTVHRN 109 (215)
Q Consensus 85 a~~~~~~~--~----~~~~~lG~~~~~v~~~ 109 (215)
+..+.... + ...++||+++..+..|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~gLgl~~~~i~pH 113 (154)
T PF03575_consen 83 GPSIETDSDSDDVELTNYDGLGLLPFVIIPH 113 (154)
T ss_dssp SSBSCCGTTCCGCCECESB---SSSSEEETS
T ss_pred cCceeecCcCCcccCCCCCcCCCCCCEeECC
Confidence 76653321 0 1135888888777654
No 140
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.00062 Score=55.65 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=64.0
Q ss_pred CEEEEEecCCC----hHHHHHHHHHCC---CeEEEECCC----C-CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHH
Q 028010 1 MVVGVLALQGS----FNEHIAALKRLG---VKGVEIRKP----D-QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFV 68 (215)
Q Consensus 1 m~v~il~~~G~----~~s~~~~l~~~G---~~v~~~~~~----~-~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~ 68 (215)
|+|.|..-.|. +...++.|+..- +++..++.. + ..+....||+|||.+..+-+.-. .--.+.|..++
T Consensus 1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~~Li~EpW~~~T~lLV~pGGaDlpY~~~l~-g~g~a~i~~yv 79 (253)
T COG4285 1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQFLIKEPWEETTLLLVFPGGADLPYVQVLQ-GLGTARIKNYV 79 (253)
T ss_pred CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeheeecCcchhceEEEEecCCCCchHHHHhc-chhhhhHHHHH
Confidence 78888877773 223345555443 244444321 2 23456789999997754322211 11246789999
Q ss_pred HcCCcEEEEehHHHHHHHhhcc--CC---CCCccccceeeeEEEec
Q 028010 69 KMGKPVWGTCAGLIFLANKAVG--QK---LGGQELVGGLDCTVHRN 109 (215)
Q Consensus 69 ~~~~PilGIC~G~QlLa~~~~~--~~---~~~~~~lG~~~~~v~~~ 109 (215)
++|.-.||||+|.-.=+...+- +. -.+...|++++|++...
T Consensus 80 k~GG~fLGiCAG~YFg~~~veF~~p~~~~vvgkRdL~fFpGT~~GP 125 (253)
T COG4285 80 KEGGNFLGICAGGYFGSAYVEFAEPTGIEVVGKRDLGFFPGTARGP 125 (253)
T ss_pred hcCCeEEEEeccccccceEEEEecCCCceeeecccccccCCccCCC
Confidence 9999999999997654433321 10 11245688888877643
No 141
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=97.72 E-value=5.7e-05 Score=59.26 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=40.0
Q ss_pred CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 34 ~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
+..++|.|++|||.. ......+..+.++|++..++++++.+||.|..+|+++
T Consensus 58 ~~~~~D~lvvpg~~~--~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 58 DAPDFDILVVPGGPG--FDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CCSCCSEEEEE-STT--HHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred hcccCCEEEeCCCCC--chhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 456799999999976 2222222456788988888999999999999999998
No 142
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.00043 Score=66.48 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=58.6
Q ss_pred EEEEEecCCCh--HHHHHHHHHCCCeEEE---ECCC---CCCCCcCEEEEcCCCcch------HHHH---HhhCCHHHHH
Q 028010 2 VVGVLALQGSF--NEHIAALKRLGVKGVE---IRKP---DQLQNVSSLIIPGGESTT------MARL---AEYHNLFPAL 64 (215)
Q Consensus 2 ~v~il~~~G~~--~s~~~~l~~~G~~v~~---~~~~---~~l~~~d~lil~GG~~~~------~~~l---~~~~~l~~~i 64 (215)
||+||.-+|.. .+...+|..+|++..- .+.. ..+++|-+|+.+||++.+ ..|- .-+++++...
T Consensus 1060 kVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF 1139 (1320)
T KOG1907|consen 1060 KVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQF 1139 (1320)
T ss_pred ceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHH
Confidence 89999999964 4678899999986543 3322 357889999999997632 1121 1123333333
Q ss_pred HHHH-HcCCcEEEEehHHHHHHHh
Q 028010 65 REFV-KMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 65 ~~~~-~~~~PilGIC~G~QlLa~~ 87 (215)
.++. +.+.--||||.|.|+|+..
T Consensus 1140 ~~F~~R~DtFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1140 EAFFNRQDTFSLGICNGCQLMSRL 1163 (1320)
T ss_pred HHHhcCCCceeeecccHhHHHHHh
Confidence 3333 3567799999999999985
No 143
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00019 Score=58.65 Aligned_cols=74 Identities=26% Similarity=0.326 Sum_probs=58.1
Q ss_pred HHHHHHHCCCeEEEECCC----CC----CCCcCEEEEcCCCcch-HHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHH
Q 028010 15 HIAALKRLGVKGVEIRKP----DQ----LQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~~~~----~~----l~~~d~lil~GG~~~~-~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa 85 (215)
..++|+++|+.++-++.. ++ +.+.|+|++.||..-. +..+ ++.++++.|++.+++|+|++|+.+|+-+-+
T Consensus 54 ~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~l-ke~gld~iIr~~vk~G~~YiG~SAGA~ia~ 132 (224)
T COG3340 54 VRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQEL-KETGLDDIIRERVKAGTPYIGWSAGANIAG 132 (224)
T ss_pred HHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHH-HHhCcHHHHHHHHHcCCceEEeccCceeec
Confidence 568999999988776532 22 4569999999997643 3344 347999999999999999999999998877
Q ss_pred Hhhc
Q 028010 86 NKAV 89 (215)
Q Consensus 86 ~~~~ 89 (215)
..+.
T Consensus 133 p~I~ 136 (224)
T COG3340 133 PTIE 136 (224)
T ss_pred Ccee
Confidence 7654
No 144
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=97.48 E-value=0.00051 Score=56.62 Aligned_cols=69 Identities=22% Similarity=0.333 Sum_probs=50.0
Q ss_pred HHHHHHHCCCeEEEECCCC-------------------C--CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCc
Q 028010 15 HIAALKRLGVKGVEIRKPD-------------------Q--LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~~~~~-------------------~--l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~P 73 (215)
..+.|++.|++++++.... | -+.||.+|||||.... ..|.....+.+.++++.+.|+.
T Consensus 24 p~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~-e~L~~~~~v~~lvK~q~~~gkL 102 (247)
T KOG2764|consen 24 PIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGA-ETLSECEKVVDLVKEQAESGKL 102 (247)
T ss_pred eHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhh-hhhhhcHHHHHHHHHHHhcCCe
Confidence 3688999999998875320 1 1479999999994322 2333334567889999999999
Q ss_pred EEEEehHHHHH
Q 028010 74 VWGTCAGLIFL 84 (215)
Q Consensus 74 ilGIC~G~QlL 84 (215)
+..||.|.-++
T Consensus 103 IaaICaap~~a 113 (247)
T KOG2764|consen 103 IAAICAAPLTA 113 (247)
T ss_pred EEEeecchHHH
Confidence 99999997433
No 145
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=97.17 E-value=0.0018 Score=53.43 Aligned_cols=86 Identities=21% Similarity=0.319 Sum_probs=63.0
Q ss_pred EEEEEecCCC-----hHHHHHHHHHCCCe-EEEECCC-----------CCCCCcCEEEEcCCCcch-HHHHHhhCCHHHH
Q 028010 2 VVGVLALQGS-----FNEHIAALKRLGVK-GVEIRKP-----------DQLQNVSSLIIPGGESTT-MARLAEYHNLFPA 63 (215)
Q Consensus 2 ~v~il~~~G~-----~~s~~~~l~~~G~~-v~~~~~~-----------~~l~~~d~lil~GG~~~~-~~~l~~~~~l~~~ 63 (215)
||+++...+. ...+.++++++|++ +..+... +.+.++|+|++.||.... +..+.. .++.+.
T Consensus 31 ~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~-t~l~~~ 109 (217)
T cd03145 31 RIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGG-TPLLDA 109 (217)
T ss_pred cEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcC-ChHHHH
Confidence 6777776441 23467788999985 4444321 125689999999997643 344543 678899
Q ss_pred HHHHHHcCCcEEEEehHHHHHHHhh
Q 028010 64 LREFVKMGKPVWGTCAGLIFLANKA 88 (215)
Q Consensus 64 i~~~~~~~~PilGIC~G~QlLa~~~ 88 (215)
|++.+++|+|+.|+-+|+.+++...
T Consensus 110 l~~~~~~G~v~~G~SAGA~i~~~~~ 134 (217)
T cd03145 110 LRKVYRGGVVIGGTSAGAAVMSDTM 134 (217)
T ss_pred HHHHHHcCCEEEEccHHHHhhhhcc
Confidence 9999999999999999999998864
No 146
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=97.17 E-value=0.0017 Score=54.76 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=72.1
Q ss_pred EEEEEecCC-Ch----HHHHHHHHHCCCe-EEEECC--C---------CCCCCcCEEEEcCCCcch-HHHHHhhCCHHHH
Q 028010 2 VVGVLALQG-SF----NEHIAALKRLGVK-GVEIRK--P---------DQLQNVSSLIIPGGESTT-MARLAEYHNLFPA 63 (215)
Q Consensus 2 ~v~il~~~G-~~----~s~~~~l~~~G~~-v~~~~~--~---------~~l~~~d~lil~GG~~~~-~~~l~~~~~l~~~ 63 (215)
||+|+-.-. .. ....++|+++|++ +.++.. . +.+.++|+|++.||.... .+.+. ..++.+.
T Consensus 30 rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~-~t~l~~~ 108 (250)
T TIGR02069 30 IIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLG-DTPLLDR 108 (250)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHc-CCcHHHH
Confidence 678876533 22 2456788999984 554432 1 125689999999997643 34453 4688899
Q ss_pred HHHHHHcCCcEEEEehHHHHHHHhhccC-----CC--C---CccccceeeeEEE
Q 028010 64 LREFVKMGKPVWGTCAGLIFLANKAVGQ-----KL--G---GQELVGGLDCTVH 107 (215)
Q Consensus 64 i~~~~~~~~PilGIC~G~QlLa~~~~~~-----~~--~---~~~~lG~~~~~v~ 107 (215)
|++++++|+|+.|+-+|+.+++...-.. .+ . ..++||+++..+.
T Consensus 109 l~~~~~~G~vi~G~SAGA~i~~~~~~~~g~~~~~p~~~~~~~~~GLgll~~~vi 162 (250)
T TIGR02069 109 LRKRVHEGIILGGTSAGAAVMSDTMIVGGDSEESPRKETVDMAPGLGLLPNVLI 162 (250)
T ss_pred HHHHHHcCCeEEEccHHHHhcccceEecCCCcCCccccceecccCccccCCcee
Confidence 9999999999999999999998765211 01 1 1257888887754
No 147
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=97.07 E-value=0.002 Score=56.30 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=37.2
Q ss_pred CCCcCEEEEcCCCc-chHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHHh
Q 028010 35 LQNVSSLIIPGGES-TTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (215)
Q Consensus 35 l~~~d~lil~GG~~-~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~ 87 (215)
...+|.+++.||.. ...... +.+.++|++..+.|..+.|||.|.-+|+++
T Consensus 74 ~~~~~~v~v~~g~~~~~~~~~---~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 74 APPIDILPVCGGLGPERPVNA---PALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred cCcceEEEEecCCCcccccch---HHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 34588888866633 211111 235789999999999999999999999997
No 148
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.58 E-value=0.018 Score=45.22 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=42.6
Q ss_pred CCcCEEEEcCCCcch--HHHHH-------hhCCHHHHHHHHHHcCCcEEEEehHHHHHHHhhcc
Q 028010 36 QNVSSLIIPGGESTT--MARLA-------EYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG 90 (215)
Q Consensus 36 ~~~d~lil~GG~~~~--~~~l~-------~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~ 90 (215)
+.+|+||+|||++.+ ..++. -+.++..+.+.+.++|||+--||....++.+.+|.
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~ 147 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGF 147 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCC
Confidence 468999999997532 11111 12456788899999999999999999999999975
No 149
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.09 E-value=0.13 Score=44.36 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=48.6
Q ss_pred CEEEEEecCCC------hHHHHHHHHHCCCeEEEECC-------------------C-CCCC-CcCEEEEcCCCcchHHH
Q 028010 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRK-------------------P-DQLQ-NVSSLIIPGGESTTMAR 53 (215)
Q Consensus 1 m~v~il~~~G~------~~s~~~~l~~~G~~v~~~~~-------------------~-~~l~-~~d~lil~GG~~~~~~~ 53 (215)
|||+|+...+. ...+.++|++.|+++.+... . +++. .+|.+|.-||-++.+
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L-- 78 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDGTFL-- 78 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcHHHH--
Confidence 89999987664 22456778889998776431 0 1222 589999999977643
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 54 LAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 54 l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
...+.+...++|+|||=.|.
T Consensus 79 --------~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 79 --------RTATYVGNSNIPILGINTGR 98 (292)
T ss_pred --------HHHHHhcCCCCCEEEEecCC
Confidence 22334444689999999885
No 150
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=94.44 E-value=0.11 Score=36.04 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=33.9
Q ss_pred CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCC
Q 028010 9 QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (215)
Q Consensus 9 ~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG 46 (215)
...+..+.++|++.|++++..+...++..+|++|++|-
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~ 44 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQ 44 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECC
Confidence 45667889999999999999998888999999999994
No 151
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.32 E-value=0.26 Score=42.23 Aligned_cols=70 Identities=26% Similarity=0.277 Sum_probs=48.2
Q ss_pred CEEEEEecCCC------hHHHHHHHHHCCCeEEEECC-----C-------CCC--CCcCEEEEcCCCcchHHHHHhhCCH
Q 028010 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRK-----P-------DQL--QNVSSLIIPGGESTTMARLAEYHNL 60 (215)
Q Consensus 1 m~v~il~~~G~------~~s~~~~l~~~G~~v~~~~~-----~-------~~l--~~~d~lil~GG~~~~~~~l~~~~~l 60 (215)
|||+|+...+. ...+.++|++.|+++.+... . ..+ .++|.+|.-||-++..
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL--------- 71 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTIL--------- 71 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHH---------
Confidence 89999988775 22456778899998877521 0 011 2589999999976543
Q ss_pred HHHHHHHHHcCCcEEEEehHH
Q 028010 61 FPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 61 ~~~i~~~~~~~~PilGIC~G~ 81 (215)
+.++ ....++|++||=.|.
T Consensus 72 -~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 72 -RIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred -HHHH-hcCCCCeEEEEeCCC
Confidence 2233 334589999999886
No 152
>PRK03094 hypothetical protein; Provisional
Probab=93.70 E-value=0.19 Score=34.80 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=32.6
Q ss_pred CCChHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCC
Q 028010 9 QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (215)
Q Consensus 9 ~G~~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG 46 (215)
.-++..+.++|++.|++|+-++...+...+|++|++|-
T Consensus 7 E~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~ 44 (80)
T PRK03094 7 EQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQ 44 (80)
T ss_pred ecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCC
Confidence 34566788999999999999988777889999999994
No 153
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.28 E-value=0.51 Score=41.04 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=47.1
Q ss_pred CEEEEEecCCCh------HHHHHHHHHCCCeEEEECCC-----------------------CCC-CCcCEEEEcCCCcch
Q 028010 1 MVVGVLALQGSF------NEHIAALKRLGVKGVEIRKP-----------------------DQL-QNVSSLIIPGGESTT 50 (215)
Q Consensus 1 m~v~il~~~G~~------~s~~~~l~~~G~~v~~~~~~-----------------------~~l-~~~d~lil~GG~~~~ 50 (215)
+||+|+...+.- ..+.++|++.|+++.+.... .++ .++|.+|.-||-++.
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTl 81 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDGTV 81 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEEeCcHHH
Confidence 269999876642 24566788899988664320 112 258999999997754
Q ss_pred HHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 51 MARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 51 ~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
+ ...+.+...++|+|||=.|.
T Consensus 82 L----------~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 82 L----------SAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred H----------HHHHHhcCCCCcEEEEeCCC
Confidence 3 23344445689999998773
No 154
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=92.99 E-value=0.15 Score=42.94 Aligned_cols=60 Identities=15% Similarity=0.035 Sum_probs=36.8
Q ss_pred eCceeeecCCCeEEEEEeeCCCCc------cccCCcceeeecccCCCCCceEEEEeeCCEEEEeeCCccCCC
Q 028010 143 RAPAVLDVGPDVDVLADYPVPSNK------VLYSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTAD 208 (215)
Q Consensus 143 ~~pl~~~~~~~~~~~Hs~~~~~~~------~~~~~~la~s~~~~~~~~~~~~~~~~~~~v~g~QFHPE~s~~ 208 (215)
.++++.|....|+.=||-+..... ++. .+|++|+.. -....+-+.++.+=+--|||.+.+
T Consensus 176 ~~~l~rGfdd~f~~PhSR~t~~~~e~i~~~~~L-eIL~es~e~-----G~~l~a~k~~r~ifv~gH~EYD~~ 241 (307)
T COG1897 176 HSLLTRGFDDSFLAPHSRYTDVPKEDILAVPDL-EILAESKEA-----GVYLLASKDGRNIFVTGHPEYDAT 241 (307)
T ss_pred cchhhccCCccccCcccccccCCHHHHhhCCCc-eeeeccccc-----ceEEEecCCCCeEEEeCCcchhhh
Confidence 567788887788888885443221 122 567777754 133444455666666679998654
No 155
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.09 E-value=0.9 Score=39.14 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=46.7
Q ss_pred EEEEEecCCCh-----HHHHHHHHHCCCeEEEECCC-----------CCC-CCcCEEEEcCCCcchHHHHHhhCCHHHHH
Q 028010 2 VVGVLALQGSF-----NEHIAALKRLGVKGVEIRKP-----------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (215)
Q Consensus 2 ~v~il~~~G~~-----~s~~~~l~~~G~~v~~~~~~-----------~~l-~~~d~lil~GG~~~~~~~l~~~~~l~~~i 64 (215)
||+|+...+.. ..+.++|++.|+++.+-... +++ .++|.+|.-||-++.+ ...
T Consensus 12 ~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L----------~aa 81 (287)
T PRK14077 12 KIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDGTLI----------SLC 81 (287)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCHHHH----------HHH
Confidence 69998776631 13456788889887764321 222 3589999999976543 233
Q ss_pred HHHHHcCCcEEEEehHH
Q 028010 65 REFVKMGKPVWGTCAGL 81 (215)
Q Consensus 65 ~~~~~~~~PilGIC~G~ 81 (215)
+.+...++|+|||=.|.
T Consensus 82 ~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 82 RKAAEYDKFVLGIHAGH 98 (287)
T ss_pred HHhcCCCCcEEEEeCCC
Confidence 44445689999999886
No 156
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.96 E-value=1.2 Score=38.45 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=46.8
Q ss_pred EEEEEecCCC------hHHHHHHHHHCCCeEEEECCC-------------------CCCC-CcCEEEEcCCCcchHHHHH
Q 028010 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP-------------------DQLQ-NVSSLIIPGGESTTMARLA 55 (215)
Q Consensus 2 ~v~il~~~G~------~~s~~~~l~~~G~~v~~~~~~-------------------~~l~-~~d~lil~GG~~~~~~~l~ 55 (215)
||+|+...+. ...+.++|++.|+++.+.... .++. .+|.+|.-||-++.+.
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~--- 83 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTFLS--- 83 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCcHHHHH---
Confidence 6999877664 224567788899987764210 1222 5899999999776432
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 56 EYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 56 ~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
..+.+...++|++||=.|.
T Consensus 84 -------aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 84 -------VAREIAPRAVPIIGINQGH 102 (296)
T ss_pred -------HHHHhcccCCCEEEEecCC
Confidence 2333444689999999885
No 157
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.82 E-value=1.1 Score=38.63 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=46.9
Q ss_pred EEEEEecCCCh------HHHHHHHHHCCCeEEEECCC--------------CCC-CCcCEEEEcCCCcchHHHHHhhCCH
Q 028010 2 VVGVLALQGSF------NEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL 60 (215)
Q Consensus 2 ~v~il~~~G~~------~s~~~~l~~~G~~v~~~~~~--------------~~l-~~~d~lil~GG~~~~~~~l~~~~~l 60 (215)
+|+|+...+.- ..+.++|++.|+++.+.... +++ .++|.+|.-||-++...
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT~L~-------- 78 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDGNMLG-------- 78 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcHHHHH--------
Confidence 68998876642 24567788899987764320 122 25899999999776432
Q ss_pred HHHHHHHHHcCCcEEEEehHH
Q 028010 61 FPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 61 ~~~i~~~~~~~~PilGIC~G~ 81 (215)
..+.+...++|++||=.|.
T Consensus 79 --aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 79 --AARVLARYDIKVIGINRGN 97 (292)
T ss_pred --HHHHhcCCCCeEEEEECCC
Confidence 2333434579999999887
No 158
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.67 E-value=1.1 Score=38.90 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=46.9
Q ss_pred EEEEEecCCCh------HHHHHHHHHCCCeEEEECCC-----------------------CCC-CCcCEEEEcCCCcchH
Q 028010 2 VVGVLALQGSF------NEHIAALKRLGVKGVEIRKP-----------------------DQL-QNVSSLIIPGGESTTM 51 (215)
Q Consensus 2 ~v~il~~~G~~------~s~~~~l~~~G~~v~~~~~~-----------------------~~l-~~~d~lil~GG~~~~~ 51 (215)
||+|+...+.- ..+.++|++.|+++.+.... +.+ .++|.+|.-||-++.+
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L 86 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGDGTIL 86 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEcCCHHHH
Confidence 69998876642 24567788899987764310 112 3579999999977653
Q ss_pred HHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 52 ~~l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
. ..+.+...++|+|||=.|.
T Consensus 87 ~----------aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 87 R----------AAELARAADVPVLGVNLGH 106 (306)
T ss_pred H----------HHHHhccCCCcEEEEecCC
Confidence 2 2334445789999998874
No 159
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=91.45 E-value=1.1 Score=38.65 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=47.1
Q ss_pred EEEEEecCCC------hHHHHHHHHHCCCeEEEECCC--------------CCC-CCcCEEEEcCCCcchHHHHHhhCCH
Q 028010 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL 60 (215)
Q Consensus 2 ~v~il~~~G~------~~s~~~~l~~~G~~v~~~~~~--------------~~l-~~~d~lil~GG~~~~~~~l~~~~~l 60 (215)
+|+|+...+. ...+.++|++.|+++.+.... +++ ..+|.+|.-||-++..
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l--------- 77 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTML--------- 77 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcHHHH---------
Confidence 5888877664 235677888899987664310 122 2589999999976553
Q ss_pred HHHHHHHHHcCCcEEEEehHH
Q 028010 61 FPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 61 ~~~i~~~~~~~~PilGIC~G~ 81 (215)
+.++.+...++|+|||=.|.
T Consensus 78 -~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 78 -GIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred -HHHHHhcCCCCCEEEEcCCC
Confidence 23344445689999998886
No 160
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.43 E-value=0.26 Score=37.33 Aligned_cols=44 Identities=16% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHH--cCCcEEEEeh
Q 028010 31 KPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK--MGKPVWGTCA 79 (215)
Q Consensus 31 ~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~--~~~PilGIC~ 79 (215)
..+++.++|.+|+.||.... ..... .+.+++.++ .++|+.|+|+
T Consensus 79 e~e~~n~aDvvVLlGGLaMP--~~gv~---~d~~kel~ee~~~kkliGvCf 124 (154)
T COG4090 79 EREELNSADVVVLLGGLAMP--KIGVT---PDDAKELLEELGNKKLIGVCF 124 (154)
T ss_pred CccccccccEEEEEcccccC--cCCCC---HHHHHHHHHhcCCCceEEeeH
Confidence 34567789999999985421 11100 122223332 4678999997
No 161
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=91.39 E-value=0.88 Score=34.93 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=43.0
Q ss_pred HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010 14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG 76 (215)
...++|.++|+.+.++....++.+|+.||+|.-.... + ...+.|++++++|.-++.
T Consensus 30 ~~~~~l~~~gi~~d~v~~~~~l~~y~~vi~P~~~~~~-~------~~~~~l~~~v~~GG~li~ 85 (154)
T cd03143 30 ALYRALRELGIPVDVVPPDADLSGYKLVVLPDLYLLS-D------ATAAALRAYVENGGTLVA 85 (154)
T ss_pred HHHHHHHHCCCCEEEECCCCCcccCCEEEECchhcCC-H------HHHHHHHHHHHCCCEEEE
Confidence 5678999999999999988888999999999854321 1 225778899998765444
No 162
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.17 E-value=1 Score=38.33 Aligned_cols=63 Identities=22% Similarity=0.262 Sum_probs=42.1
Q ss_pred CEEEEEecCCChH------HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHH--cCC
Q 028010 1 MVVGVLALQGSFN------EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK--MGK 72 (215)
Q Consensus 1 m~v~il~~~G~~~------s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~--~~~ 72 (215)
|||+|+.. ..-. .+.+.|++.|+++. ..++|.+|.-||-++.+. .++.+.. .++
T Consensus 1 M~i~Ii~~-~~~~~~~~~~~l~~~l~~~g~~~~-------~~~~Dlvi~iGGDGT~L~----------a~~~~~~~~~~i 62 (265)
T PRK04885 1 MKVAIISN-GDPKSKRVASKLKKYLKDFGFILD-------EKNPDIVISVGGDGTLLS----------AFHRYENQLDKV 62 (265)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHHHHcCCccC-------CcCCCEEEEECCcHHHHH----------HHHHhcccCCCC
Confidence 89999966 3311 24556777888731 246899999999776432 3334433 589
Q ss_pred cEEEEehHH
Q 028010 73 PVWGTCAGL 81 (215)
Q Consensus 73 PilGIC~G~ 81 (215)
|++||=.|.
T Consensus 63 PilGIN~G~ 71 (265)
T PRK04885 63 RFVGVHTGH 71 (265)
T ss_pred eEEEEeCCC
Confidence 999998875
No 163
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.73 E-value=1.4 Score=37.17 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=45.6
Q ss_pred CEEEEEecCCChH---HHHHHHHHCCCeEEEECCCC-CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010 1 MVVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD-QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (215)
Q Consensus 1 m~v~il~~~G~~~---s~~~~l~~~G~~v~~~~~~~-~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG 76 (215)
||++|..-+.... .+.+.|.+.|.++....... ...++|.+|.-||-++.+.. ++.+ ++|++|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT~L~a----------~~~~---~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGDGTVLKA----------AKKV---GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCcHHHHHH----------HHHc---CCCEEE
Confidence 8999996555333 35667778888766543322 23578999999997654322 2222 899999
Q ss_pred EehHH
Q 028010 77 TCAGL 81 (215)
Q Consensus 77 IC~G~ 81 (215)
|=.|.
T Consensus 68 in~G~ 72 (256)
T PRK14075 68 FKAGR 72 (256)
T ss_pred EeCCC
Confidence 98875
No 164
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=90.65 E-value=0.63 Score=37.85 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+.++|+++|+.+.+++..+++++|..||+|.-.-.. + ...+.|++++++|..++..
T Consensus 34 ~~y~al~~~gi~vDvv~~~~dL~~Ykllv~P~~~~l~-~------~~~~~L~~yV~~GG~li~~ 90 (207)
T PF08532_consen 34 GWYRALRELGIPVDVVSPDDDLSGYKLLVLPSLYILS-P------EFAERLRAYVENGGTLILT 90 (207)
T ss_dssp HHHHHHHTTT--EEEE-TTS--TT-SEEEES--SC---H------HH---HHHHHT-SS-EEE-
T ss_pred HHHHHHHHcCCceEEecCcCCcccCcEEEEeeEEEEC-h------HHHHHHHHHHHCCCEEEEE
Confidence 4567899999999999988899999999999864321 1 1245678888887665533
No 165
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=90.54 E-value=0.56 Score=38.28 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=40.1
Q ss_pred HHHHHH-HCCCeEEEECCCC-----CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 15 HIAALK-RLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 15 ~~~~l~-~~G~~v~~~~~~~-----~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
+.+.|+ ..|+++++.++++ .|+++|.||+.......+.. ...+.|++++++|++++|+..++
T Consensus 24 l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l~~-----~~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 24 LAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDELTD-----EQRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp HHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS-H-----HHHHHHHHHHHTT-EEEEEGGGG
T ss_pred HHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcCCH-----HHHHHHHHHHHcCCCEEEEcccc
Confidence 345566 5688898877643 56899999987644322211 22577889999999999999443
No 166
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=90.31 E-value=1.5 Score=34.53 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=52.5
Q ss_pred CEEEEEec--CCChHH----HHHHHHHCCCeEEEECCC--C--CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHH-
Q 028010 1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRKP--D--QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK- 69 (215)
Q Consensus 1 m~v~il~~--~G~~~s----~~~~l~~~G~~v~~~~~~--~--~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~- 69 (215)
||+.|+-- .|+=.. ++..|++.|.++.+.+.. . ++.+||.+||.-+... .... +.+.+++++..+
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~--~h~~--~~~~~Fv~k~~e~ 76 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRY--GHFH--EAVQSFVKKHAEA 76 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhh--hhhH--HHHHHHHHHHHHH
Confidence 78888764 555333 455688899999887643 2 6789999999866322 1221 234566666665
Q ss_pred -cCCcEEEEehHHH
Q 028010 70 -MGKPVWGTCAGLI 82 (215)
Q Consensus 70 -~~~PilGIC~G~Q 82 (215)
+.+|...+|.+.-
T Consensus 77 L~~kP~A~f~vnl~ 90 (175)
T COG4635 77 LSTKPSAFFSVNLT 90 (175)
T ss_pred HhcCCceEEEeehh
Confidence 5899999998743
No 167
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.21 E-value=1.5 Score=41.33 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=47.7
Q ss_pred CEEEEEecCCCh------HHHHHHHHHCCCeEEEECC-----C----------CCCCCcCEEEEcCCCcchHHHHHhhCC
Q 028010 1 MVVGVLALQGSF------NEHIAALKRLGVKGVEIRK-----P----------DQLQNVSSLIIPGGESTTMARLAEYHN 59 (215)
Q Consensus 1 m~v~il~~~G~~------~s~~~~l~~~G~~v~~~~~-----~----------~~l~~~d~lil~GG~~~~~~~l~~~~~ 59 (215)
|||+|+...+.- ..+.++|++.|+++.+... . .++.++|.+|.-||-++.+
T Consensus 291 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L-------- 362 (569)
T PRK14076 291 TKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDGTVL-------- 362 (569)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcHHHH--------
Confidence 689998876642 2356678888988766421 0 1234689999999977643
Q ss_pred HHHHHHHHHHcCCcEEEEehHH
Q 028010 60 LFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 60 l~~~i~~~~~~~~PilGIC~G~ 81 (215)
...+.+...++|+|||=.|.
T Consensus 363 --~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 363 --RASKLVNGEEIPIICINMGT 382 (569)
T ss_pred --HHHHHhcCCCCCEEEEcCCC
Confidence 22334445689999998875
No 168
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=89.97 E-value=0.28 Score=41.20 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=63.6
Q ss_pred HHHHHHCCCe-EEEE--CCCC---------CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHH
Q 028010 16 IAALKRLGVK-GVEI--RKPD---------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIF 83 (215)
Q Consensus 16 ~~~l~~~G~~-v~~~--~~~~---------~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~Ql 83 (215)
.+.++..|++ +.++ ++.+ .+.++++|+++||-...+-..-++..+.+.|++..+.|.-+-|..+|+.+
T Consensus 73 ~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAav 152 (293)
T COG4242 73 IRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAV 152 (293)
T ss_pred hhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhh
Confidence 3578888874 4443 3332 24679999999996532222223467889999999999999999999999
Q ss_pred HHHhhccC---C--CC-----CccccceeeeEEEe
Q 028010 84 LANKAVGQ---K--LG-----GQELVGGLDCTVHR 108 (215)
Q Consensus 84 La~~~~~~---~--~~-----~~~~lG~~~~~v~~ 108 (215)
|..-.-.. . +. .-.+||++++.+..
T Consensus 153 M~~~mi~~g~s~~~pn~~~v~m~~glg~lp~~ivD 187 (293)
T COG4242 153 MSDHMIVAGDSGEYPNRELVDMGFGLGFLPGVIVD 187 (293)
T ss_pred cCCceEeccCCCCCCCcchhhhccccccccceeee
Confidence 98764221 1 11 12478999888765
No 169
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.22 E-value=3.5 Score=35.80 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=45.4
Q ss_pred EEEEEecCCChH------HHHHHHHHCCCeEEEECCC----------CCC-CCcCEEEEcCCCcchHHHHHhhCCHHHHH
Q 028010 2 VVGVLALQGSFN------EHIAALKRLGVKGVEIRKP----------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (215)
Q Consensus 2 ~v~il~~~G~~~------s~~~~l~~~G~~v~~~~~~----------~~l-~~~d~lil~GG~~~~~~~l~~~~~l~~~i 64 (215)
||+++...+.-. .+.+.|++.|+++.+.... ... ..+|.+|.-||-++... .+
T Consensus 5 kv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~----------~~ 74 (305)
T PRK02645 5 QVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLA----------AA 74 (305)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHHH----------HH
Confidence 688888777422 3466788889987764321 111 35899999999776532 22
Q ss_pred HHHHHcCCcEEEEeh
Q 028010 65 REFVKMGKPVWGTCA 79 (215)
Q Consensus 65 ~~~~~~~~PilGIC~ 79 (215)
+.+...++|++||=.
T Consensus 75 ~~~~~~~~pv~gin~ 89 (305)
T PRK02645 75 RHLAPHDIPILSVNV 89 (305)
T ss_pred HHhccCCCCEEEEec
Confidence 333346999999987
No 170
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=88.20 E-value=3.2 Score=32.96 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=42.1
Q ss_pred CEEEEEec--CCChHHHH----HHHHHCCCeEEEECCC----CCCCCcCEEEEcCCC--cchHHHHHhhCCHHHHHHHHH
Q 028010 1 MVVGVLAL--QGSFNEHI----AALKRLGVKGVEIRKP----DQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFV 68 (215)
Q Consensus 1 m~v~il~~--~G~~~s~~----~~l~~~G~~v~~~~~~----~~l~~~d~lil~GG~--~~~~~~l~~~~~l~~~i~~~~ 68 (215)
||++|+-. .|+=..++ +.|+. |.++.+++.. .++.+||.||+.++. +..... +.+++++..
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~------~~~fl~~~~ 73 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSA------LYKFVKKHA 73 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHH------HHHHHHHHH
Confidence 88888776 45544444 44444 6676665432 356789998887752 111111 123333322
Q ss_pred H--cCCcEEEEehHH
Q 028010 69 K--MGKPVWGTCAGL 81 (215)
Q Consensus 69 ~--~~~PilGIC~G~ 81 (215)
. .++|+.-.|.|+
T Consensus 74 ~~l~~K~v~~F~v~l 88 (177)
T PRK11104 74 TQLNQMPSAFFSVNL 88 (177)
T ss_pred HHhCCCeEEEEEech
Confidence 1 588988888773
No 171
>PLN02929 NADH kinase
Probab=87.36 E-value=2.2 Score=37.07 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=40.3
Q ss_pred HHHHHHHHCCCeEEEECCC---CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010 14 EHIAALKRLGVKGVEIRKP---DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~---~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G 80 (215)
.+.+.|++.|+++..+... +.+.++|.+|.-||-++... ..+.+ ..++|++||=.|
T Consensus 38 ~~~~~L~~~gi~~~~v~r~~~~~~~~~~Dlvi~lGGDGT~L~----------aa~~~-~~~iPvlGIN~G 96 (301)
T PLN02929 38 FCKDILQQKSVDWECVLRNELSQPIRDVDLVVAVGGDGTLLQ----------ASHFL-DDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHHcCCEEEEeeccccccccCCCCEEEEECCcHHHHH----------HHHHc-CCCCcEEEEECC
Confidence 4567899999998665432 34567999999999776432 22333 568999999988
No 172
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.32 E-value=3.7 Score=37.62 Aligned_cols=30 Identities=27% Similarity=0.051 Sum_probs=27.2
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEEC
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~ 30 (215)
|||+|+-+...=.++.+.|.+.|+++.+.+
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D 37 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSD 37 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEEEc
Confidence 689999998888999999999999998876
No 173
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.92 E-value=3.3 Score=35.20 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=39.4
Q ss_pred CEEEEEecCCChH-HHHHHHH----HCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 1 MVVGVLALQGSFN-EHIAALK----RLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 1 m~v~il~~~G~~~-s~~~~l~----~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
||..|++-.-.-. ++.+.|+ ..+. ..+++|.+|.-||-++.+ ..++.+...++|++
T Consensus 1 ~~~~i~~~~~~~s~~~~~~l~~~~~~~~~---------~~~~~D~vi~iGGDGT~L----------~a~~~~~~~~iPil 61 (259)
T PRK00561 1 MKYKIFASTTPQTEPVLPKLKKVLKKKLA---------VEDGADYLFVLGGDGFFV----------STAANYNCAGCKVV 61 (259)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHhhCCC---------ccCCCCEEEEECCcHHHH----------HHHHHhcCCCCcEE
Confidence 7888888755322 2334343 3332 235689999999977643 23344445789999
Q ss_pred EEehHH
Q 028010 76 GTCAGL 81 (215)
Q Consensus 76 GIC~G~ 81 (215)
||=+|.
T Consensus 62 GIN~G~ 67 (259)
T PRK00561 62 GINTGH 67 (259)
T ss_pred EEecCC
Confidence 999874
No 174
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.53 E-value=6.8 Score=33.48 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=41.0
Q ss_pred CEEEEEecCCChH------HHHHHHHHCCCeEEEECCC-----------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHH
Q 028010 1 MVVGVLALQGSFN------EHIAALKRLGVKGVEIRKP-----------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (215)
Q Consensus 1 m~v~il~~~G~~~------s~~~~l~~~G~~v~~~~~~-----------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~ 63 (215)
|||+|+...+.-. .+.++| +.|+++.+.... ++. ++|.+|.-||-++.+...
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~-~~D~vi~lGGDGT~L~a~--------- 69 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEI-NADVIITIGGDGTILRTL--------- 69 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCccccc-CCCEEEEEcCcHHHHHHH---------
Confidence 8999998766422 244556 468877654321 112 689999999977643222
Q ss_pred HHHHHHcCCcEEEEehH
Q 028010 64 LREFVKMGKPVWGTCAG 80 (215)
Q Consensus 64 i~~~~~~~~PilGIC~G 80 (215)
+. ...|++||=.|
T Consensus 70 -~~---~~~PilGIN~G 82 (271)
T PRK01185 70 -QR---AKGPILGINMG 82 (271)
T ss_pred -HH---cCCCEEEEECC
Confidence 11 24699999888
No 175
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.08 E-value=5.7 Score=34.33 Aligned_cols=70 Identities=21% Similarity=0.351 Sum_probs=46.2
Q ss_pred EEEEEecCCC------hHHHHHHHHHCCCeEEEECC-----C---------CCCC-CcCEEEEcCCCcchHHHHHhhCCH
Q 028010 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRK-----P---------DQLQ-NVSSLIIPGGESTTMARLAEYHNL 60 (215)
Q Consensus 2 ~v~il~~~G~------~~s~~~~l~~~G~~v~~~~~-----~---------~~l~-~~d~lil~GG~~~~~~~l~~~~~l 60 (215)
||+|+...+. ...+.+.|++.|+++.+... + .++. .+|.+|.-||-++....
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~------- 78 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLGA------- 78 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHHH-------
Confidence 6999877664 22456678888998776431 1 1122 48999999997655322
Q ss_pred HHHHHHHHHcCCcEEEEehHH
Q 028010 61 FPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 61 ~~~i~~~~~~~~PilGIC~G~ 81 (215)
.+.+...++|++||=.|.
T Consensus 79 ---~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 79 ---ARALARHNVPVLGINRGR 96 (295)
T ss_pred ---HHHhcCCCCCEEEEeCCc
Confidence 233334689999999875
No 176
>PRK09271 flavodoxin; Provisional
Probab=83.24 E-value=10 Score=29.37 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=29.3
Q ss_pred CEEEEEec--CCChHH----HHHHHHHCCCeEEEECC--------CCCCCCcCEEEEcC
Q 028010 1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRK--------PDQLQNVSSLIIPG 45 (215)
Q Consensus 1 m~v~il~~--~G~~~s----~~~~l~~~G~~v~~~~~--------~~~l~~~d~lil~G 45 (215)
|||.|+-. .||-.. +.+.|+..|+++++.+. ..++.++|.|++..
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt 59 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGT 59 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEEC
Confidence 88888774 555333 45667788988765432 12445789888865
No 177
>PRK06455 riboflavin synthase; Provisional
Probab=82.52 E-value=11 Score=29.56 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=43.4
Q ss_pred CEEEEEecCCChH----HHHHHHHHCC--CeEEEECCCC------------CCCCcCEEEEcC--CCcchHHHHHhhCCH
Q 028010 1 MVVGVLALQGSFN----EHIAALKRLG--VKGVEIRKPD------------QLQNVSSLIIPG--GESTTMARLAEYHNL 60 (215)
Q Consensus 1 m~v~il~~~G~~~----s~~~~l~~~G--~~v~~~~~~~------------~l~~~d~lil~G--G~~~~~~~l~~~~~l 60 (215)
|||+|+.-+=|.. ...+.|++.| .++.+++.|- .-..||++|..| |.....+.... .-.
T Consensus 2 ~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~Va~-~vS 80 (155)
T PRK06455 2 MKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYCAH-EAS 80 (155)
T ss_pred cEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhHHH-HHH
Confidence 5999998655543 3567888844 6777766542 114699999998 44433222221 111
Q ss_pred HHHHHHHHHcCCcEEEE
Q 028010 61 FPALREFVKMGKPVWGT 77 (215)
Q Consensus 61 ~~~i~~~~~~~~PilGI 77 (215)
.-+++-.++.++||.-+
T Consensus 81 ~GL~~lsL~t~~PVi~v 97 (155)
T PRK06455 81 IGLIMAQLMTNKHIIEV 97 (155)
T ss_pred HHHHHHHhhhCCCEEEE
Confidence 22334444567776554
No 178
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=81.53 E-value=0.38 Score=37.15 Aligned_cols=42 Identities=12% Similarity=0.305 Sum_probs=22.6
Q ss_pred CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010 34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (215)
Q Consensus 34 ~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~ 79 (215)
++. .|.||+.||-...-..... ....++|.+.. .+.+.|||+
T Consensus 78 ~~~-~D~vVlmGGLAMP~~~v~~-e~v~~li~ki~--~~~iiGiCF 119 (147)
T PF09897_consen 78 DPH-PDVVVLMGGLAMPKSGVTP-EDVNELIKKIS--PKKIIGICF 119 (147)
T ss_dssp -S--EEEEEEEGGGGSTTTS--H-HHHHHHHHHHE--EEEEEEEEE
T ss_pred CCC-CCEEEEEcccccCCCCCCH-HHHHHHHHHhC--cCCEEEEeh
Confidence 344 8999999995432111111 12234555543 344999997
No 179
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=80.03 E-value=6.6 Score=35.63 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=32.4
Q ss_pred CEEEEEecC-----C-----ChHHHHHHHHHCCCeEEE---ECCC-C--------CCCCcCEEEEcCCC
Q 028010 1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVE---IRKP-D--------QLQNVSSLIIPGGE 47 (215)
Q Consensus 1 m~v~il~~~-----G-----~~~s~~~~l~~~G~~v~~---~~~~-~--------~l~~~d~lil~GG~ 47 (215)
|||+|+... | |-..+.+.|+++|+++.. +.+. + .+.++|.||++||.
T Consensus 1 m~v~Ii~tGdEll~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGl 69 (413)
T TIGR00200 1 LKAEIISVGDELLLGQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGL 69 (413)
T ss_pred CEEEEEEECccccCCcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 899998753 2 333567889999998754 3332 1 23579999999974
No 180
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.67 E-value=9 Score=32.59 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=41.1
Q ss_pred EEEEEecCCChH-----HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHH-cCCcEE
Q 028010 2 VVGVLALQGSFN-----EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK-MGKPVW 75 (215)
Q Consensus 2 ~v~il~~~G~~~-----s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~-~~~Pil 75 (215)
+|+|+....... .+.++|++.|+++..- ..++|.+|.-||-++.+. ..+.+.. .+.|++
T Consensus 4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~-----~~~~D~vi~lGGDGT~L~----------a~~~~~~~~~~pil 68 (264)
T PRK03501 4 NLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH-----PKNANIIVSIGGDGTFLQ----------AVRKTGFREDCLYA 68 (264)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC-----CCCccEEEEECCcHHHHH----------HHHHhcccCCCeEE
Confidence 677776554311 2455678889877632 245899999999766432 2233322 378999
Q ss_pred EEeh-H
Q 028010 76 GTCA-G 80 (215)
Q Consensus 76 GIC~-G 80 (215)
||=. |
T Consensus 69 gIn~~G 74 (264)
T PRK03501 69 GISTKD 74 (264)
T ss_pred eEecCC
Confidence 9998 6
No 181
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=78.75 E-value=13 Score=33.77 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=48.4
Q ss_pred CEEEEEecCCChHH-HHHHHHHCCCeEEEECCC---------------------CCCCCcCEEEEcCCCcch---HHHHH
Q 028010 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIPGGESTT---MARLA 55 (215)
Q Consensus 1 m~v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~---------------------~~l~~~d~lil~GG~~~~---~~~l~ 55 (215)
+||.|+-+.+.-.+ +.+.|.+.|++|...+.. +.++++|.||++-|.+.. ....+
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 87 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR 87 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence 37899999888788 689999999998877531 113468988887664322 11111
Q ss_pred h----hCCHHHHHHHHHHcCCcEEEEeh
Q 028010 56 E----YHNLFPALREFVKMGKPVWGTCA 79 (215)
Q Consensus 56 ~----~~~l~~~i~~~~~~~~PilGIC~ 79 (215)
+ ..+-.+++.+..+ .+|+.||..
T Consensus 88 ~~~i~i~~~~e~~~~~~~-~~~~I~ITG 114 (461)
T PRK00421 88 ELGIPVVRRAEMLAELMR-FRTSIAVAG 114 (461)
T ss_pred HCCCcEEeHHHHHHHHHc-cCcEEEEEC
Confidence 1 0122344444332 458888874
No 182
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=78.70 E-value=8.8 Score=29.56 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=44.8
Q ss_pred EEEEEecCCChH-------HHHHHHHHCCC---eEEEECCCC------------CCCCcCEEEEcC----CCcchHHHHH
Q 028010 2 VVGVLALQGSFN-------EHIAALKRLGV---KGVEIRKPD------------QLQNVSSLIIPG----GESTTMARLA 55 (215)
Q Consensus 2 ~v~il~~~G~~~-------s~~~~l~~~G~---~v~~~~~~~------------~l~~~d~lil~G----G~~~~~~~l~ 55 (215)
||+|+.-+-|.. ...+.|++.|+ ++.+++.|- .-.+||++|..| |....++.+.
T Consensus 5 ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v~ 84 (144)
T PF00885_consen 5 RIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFEYVA 84 (144)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHHH
T ss_pred EEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHHHHH
Confidence 899998666533 35677888898 666665442 114699999988 4444444443
Q ss_pred hhCCHHHHHHHHHHcCCcE-EEEe
Q 028010 56 EYHNLFPALREFVKMGKPV-WGTC 78 (215)
Q Consensus 56 ~~~~l~~~i~~~~~~~~Pi-lGIC 78 (215)
. .-...+++--++.++|+ +||.
T Consensus 85 ~-~v~~gl~~lsl~~~~PV~~gvl 107 (144)
T PF00885_consen 85 N-AVSRGLMDLSLEYGIPVIFGVL 107 (144)
T ss_dssp H-HHHHHHHHHHHHHTSEEEEEEE
T ss_pred H-HHHHHHHHHhccCCccEEEEec
Confidence 2 11123344445678884 4443
No 183
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=78.44 E-value=18 Score=27.86 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=43.2
Q ss_pred CEEEEEecCCChH-------HHHHHHHHCCCe---EEEECCCC------------CCCCcCEEEEcC----CCcchHHHH
Q 028010 1 MVVGVLALQGSFN-------EHIAALKRLGVK---GVEIRKPD------------QLQNVSSLIIPG----GESTTMARL 54 (215)
Q Consensus 1 m~v~il~~~G~~~-------s~~~~l~~~G~~---v~~~~~~~------------~l~~~d~lil~G----G~~~~~~~l 54 (215)
+||+|+.-+-|.. ...+.|++.|++ +.+++.|- .-.+||++|..| |....++.+
T Consensus 8 ~ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H~e~V 87 (141)
T PLN02404 8 LRFGVVVARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTHYDAV 87 (141)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCchhHHH
Confidence 4888888655422 346678888974 55555441 114699999998 444444444
Q ss_pred HhhCCHHHHHHHHHHcCCcE
Q 028010 55 AEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 55 ~~~~~l~~~i~~~~~~~~Pi 74 (215)
.. .-...+.+-.++.++|+
T Consensus 88 ~~-~v~~gl~~vsl~~~~PV 106 (141)
T PLN02404 88 AN-SAASGVLSAGLNSGVPC 106 (141)
T ss_pred HH-HHHHHHHHHHhccCCCE
Confidence 32 11223445555678994
No 184
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.75 E-value=7.2 Score=33.35 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCeEEEECCC--------------CCC-CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010 14 EHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~--------------~~l-~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC 78 (215)
.+.++|++.|+++.+-... +++ ..+|.+|.-||-++.+ ...+.+...++|++||=
T Consensus 4 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT~L----------~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 4 NLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDGNML----------GRARVLAKYDIPLIGIN 73 (272)
T ss_pred HHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcHHHH----------HHHHHhccCCCcEEEEe
Confidence 4667899999988764321 122 2589999999976543 22334444689999998
Q ss_pred hH
Q 028010 79 AG 80 (215)
Q Consensus 79 ~G 80 (215)
.|
T Consensus 74 ~G 75 (272)
T PRK02231 74 RG 75 (272)
T ss_pred CC
Confidence 77
No 185
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=77.58 E-value=21 Score=27.36 Aligned_cols=73 Identities=26% Similarity=0.312 Sum_probs=43.0
Q ss_pred CEEEEEecCCChH-------HHHHHHHHCCCe---EEEECCCC---------CC---CCcCEEEEcC----CCcchHHHH
Q 028010 1 MVVGVLALQGSFN-------EHIAALKRLGVK---GVEIRKPD---------QL---QNVSSLIIPG----GESTTMARL 54 (215)
Q Consensus 1 m~v~il~~~G~~~-------s~~~~l~~~G~~---v~~~~~~~---------~l---~~~d~lil~G----G~~~~~~~l 54 (215)
|||+|+.-+=|-. ...+.|++.|+. +.+++.|- .+ .+||++|..| |....++..
T Consensus 1 ~ri~IV~s~~n~~i~~~L~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H~e~v 80 (138)
T TIGR00114 1 VRVGIVIARFNRDITDMLLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTPHFEYV 80 (138)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCchhHHH
Confidence 6889988554422 356778888975 44555441 11 4699999998 444444444
Q ss_pred HhhCCHHHHHHHHHHcCCcE
Q 028010 55 AEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 55 ~~~~~l~~~i~~~~~~~~Pi 74 (215)
.. .-...+++-.++.++|+
T Consensus 81 ~~-~v~~gl~~~sl~~~~PV 99 (138)
T TIGR00114 81 AD-EAAKGIADLALDYDKPV 99 (138)
T ss_pred HH-HHHHHHHHHHhhhCCCE
Confidence 32 11223444555678995
No 186
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=76.72 E-value=17 Score=29.53 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=49.6
Q ss_pred CEEEEEecCCChHH-HHHHHHHCCCeEEE-ECCC-----------------------CCCCCcCEEEEcCCC--cchHHH
Q 028010 1 MVVGVLALQGSFNE-HIAALKRLGVKGVE-IRKP-----------------------DQLQNVSSLIIPGGE--STTMAR 53 (215)
Q Consensus 1 m~v~il~~~G~~~s-~~~~l~~~G~~v~~-~~~~-----------------------~~l~~~d~lil~GG~--~~~~~~ 53 (215)
|||+||...|...+ +.+...++|.+++- ++++ +++...|.||-.=|. ++....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~~ 80 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDEL 80 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCCCCChhHH
Confidence 99999999998886 56778888988754 3332 134567888874332 222221
Q ss_pred HHhhCCHHHHHHHHHH-cCCcEEEEehHHHHH
Q 028010 54 LAEYHNLFPALREFVK-MGKPVWGTCAGLIFL 84 (215)
Q Consensus 54 l~~~~~l~~~i~~~~~-~~~PilGIC~G~QlL 84 (215)
..+ ..+.|.+.++ ++.|-|=+-.|+--|
T Consensus 81 ~~k---~~~~li~~l~~agv~RllVVGGAGSL 109 (211)
T COG2910 81 HSK---SIEALIEALKGAGVPRLLVVGGAGSL 109 (211)
T ss_pred HHH---HHHHHHHHHhhcCCeeEEEEcCccce
Confidence 111 1344445555 488877777775443
No 187
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=76.67 E-value=17 Score=30.52 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHCCCeEEEECC-CCCC-CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 11 SFNEHIAALKRLGVKGVEIRK-PDQL-QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 11 ~~~s~~~~l~~~G~~v~~~~~-~~~l-~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
.+..+.+.|++. +++..++. ...+ +++|.|||.|....-.+. -...|.+++.+|.++|
T Consensus 170 ~~~~l~~~L~~~-y~V~~~~l~~~~IP~~~d~Lvi~~P~~~ls~~------e~~~l~~yl~~GG~ll 229 (271)
T PF09822_consen 170 SYSSLKSLLEKN-YDVEELNLANEEIPDDADVLVIAGPKTDLSEE------ELYALDQYLMNGGKLL 229 (271)
T ss_pred hHHHHHHHHHhc-CceeecCCcccccCCCCCEEEEECCCCCCCHH------HHHHHHHHHHcCCeEE
Confidence 345678889988 99988876 4556 789999999864421111 1456788888887654
No 188
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=76.52 E-value=14 Score=31.30 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=32.2
Q ss_pred CEEEEEec-----CC-----ChHHHHHHHHHCCCeEEEEC---CC-CC--------CCCcCEEEEcCCCc
Q 028010 1 MVVGVLAL-----QG-----SFNEHIAALKRLGVKGVEIR---KP-DQ--------LQNVSSLIIPGGES 48 (215)
Q Consensus 1 m~v~il~~-----~G-----~~~s~~~~l~~~G~~v~~~~---~~-~~--------l~~~d~lil~GG~~ 48 (215)
|+..||.. .| |-.-+.+.|...|+++..+. +. ++ ..++|.||++||-+
T Consensus 2 ~~a~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG 71 (255)
T COG1058 2 MKAEIIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLG 71 (255)
T ss_pred ceEEEEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 46777764 23 34457889999999875543 32 21 24699999999853
No 189
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=76.27 E-value=22 Score=25.82 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=43.5
Q ss_pred EEEEEecCCChH---HHHHHHHHCCCeEEEECCC-------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcC
Q 028010 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKP-------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG 71 (215)
Q Consensus 2 ~v~il~~~G~~~---s~~~~l~~~G~~v~~~~~~-------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~ 71 (215)
||-++...++.. .....|.+.|..+..+.+. ..+.+-|.+|+-.-.+.. +...+.++.+.++|
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t-------~~~~~~~~~a~~~g 74 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGET-------DELLNLLPHLKRRG 74 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCC-------HHHHHHHHHHHHCC
Confidence 566666666544 2445667788887766543 223455777765522211 11245666777789
Q ss_pred CcEEEEehH
Q 028010 72 KPVWGTCAG 80 (215)
Q Consensus 72 ~PilGIC~G 80 (215)
.|+++|+-.
T Consensus 75 ~~vi~iT~~ 83 (128)
T cd05014 75 APIIAITGN 83 (128)
T ss_pred CeEEEEeCC
Confidence 999999964
No 190
>PRK03673 hypothetical protein; Provisional
Probab=75.53 E-value=8.9 Score=34.60 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=31.4
Q ss_pred CEEEEEecCC----------ChHHHHHHHHHCCCeEEEE---CCC-C--------CCCCcCEEEEcCCC
Q 028010 1 MVVGVLALQG----------SFNEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGE 47 (215)
Q Consensus 1 m~v~il~~~G----------~~~s~~~~l~~~G~~v~~~---~~~-~--------~l~~~d~lil~GG~ 47 (215)
|||.|+.... |-.-+.+.|.++|+++... .+. + .+..+|.||++||-
T Consensus 2 ~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGl 70 (396)
T PRK03673 2 LRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGL 70 (396)
T ss_pred CEEEEEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCC
Confidence 5888888532 2224567799999987543 332 1 23579999999974
No 191
>PRK00549 competence damage-inducible protein A; Provisional
Probab=75.15 E-value=9.6 Score=34.55 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=32.0
Q ss_pred CEEEEEecC-----C-----ChHHHHHHHHHCCCeEEEE---CCC-C--------CCCCcCEEEEcCCC
Q 028010 1 MVVGVLALQ-----G-----SFNEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGE 47 (215)
Q Consensus 1 m~v~il~~~-----G-----~~~s~~~~l~~~G~~v~~~---~~~-~--------~l~~~d~lil~GG~ 47 (215)
||++||... | |-..+.+.|+++|+++..+ .+. + ...++|.||++||.
T Consensus 1 m~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGl 69 (414)
T PRK00549 1 MKAEIIAVGTELLLGQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGL 69 (414)
T ss_pred CEEEEEEecccccCCceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCC
Confidence 888988752 2 2335678899999987543 332 1 13578999999974
No 192
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=74.11 E-value=28 Score=27.36 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=42.9
Q ss_pred EEEEEecCCChH-------HHHHHHHHCCC---eEEEECCCC------------CCCCcCEEEEcC----CCcchHHHHH
Q 028010 2 VVGVLALQGSFN-------EHIAALKRLGV---KGVEIRKPD------------QLQNVSSLIIPG----GESTTMARLA 55 (215)
Q Consensus 2 ~v~il~~~G~~~-------s~~~~l~~~G~---~v~~~~~~~------------~l~~~d~lil~G----G~~~~~~~l~ 55 (215)
||+|+.-+-|.. ...+.|++.|+ ++.+++.|- .-.+||++|..| |....++.+.
T Consensus 12 riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H~e~V~ 91 (158)
T PRK12419 12 RIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYRHEFVA 91 (158)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCchhHHHH
Confidence 788887544422 34677888895 356665441 114699999999 4444444443
Q ss_pred hhCCHHHHHHHHHHcCCcEE
Q 028010 56 EYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 56 ~~~~l~~~i~~~~~~~~Pil 75 (215)
.. -.....+-.++.++|+.
T Consensus 92 ~~-v~~gl~~vsl~~~~PV~ 110 (158)
T PRK12419 92 QA-VIDGLMRVQLDTEVPVF 110 (158)
T ss_pred HH-HHHHHHHHHhccCCCEE
Confidence 21 11234444556789953
No 193
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=73.67 E-value=11 Score=28.69 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=24.7
Q ss_pred HHHHHHHHCCCeEEEEC---CC-C--------CCCCcCEEEEcCCCc
Q 028010 14 EHIAALKRLGVKGVEIR---KP-D--------QLQNVSSLIIPGGES 48 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~---~~-~--------~l~~~d~lil~GG~~ 48 (215)
.+...|++.|+++.... +. + .++++|.||.+||.+
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g 77 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG 77 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 46778999999876543 22 1 124799999999854
No 194
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=73.58 E-value=6.6 Score=22.49 Aligned_cols=26 Identities=8% Similarity=0.314 Sum_probs=16.2
Q ss_pred CEEEEEecCCChH-----------HHHHHHHHCCCeE
Q 028010 1 MVVGVLALQGSFN-----------EHIAALKRLGVKG 26 (215)
Q Consensus 1 m~v~il~~~G~~~-----------s~~~~l~~~G~~v 26 (215)
|||+|++...|.. -+.+.+++.|.++
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~v 37 (38)
T PF09198_consen 1 MKIAIINMGNNIQNFKTTPSSETIYLFKCISDMGLNV 37 (38)
T ss_dssp -EEEEEESSS--SSSSSHHHHHHHHHHHHHHTTT-EE
T ss_pred CeEEEEecCCceeceeecCccceEeHHHHHHHhCCCC
Confidence 8999999866533 1456777888776
No 195
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=73.19 E-value=16 Score=33.97 Aligned_cols=70 Identities=23% Similarity=0.220 Sum_probs=44.4
Q ss_pred EEEEEecCCCh------HHHHHHHH-HCCCeEEEECC-------------------C-CC---C-CCcCEEEEcCCCcch
Q 028010 2 VVGVLALQGSF------NEHIAALK-RLGVKGVEIRK-------------------P-DQ---L-QNVSSLIIPGGESTT 50 (215)
Q Consensus 2 ~v~il~~~G~~------~s~~~~l~-~~G~~v~~~~~-------------------~-~~---l-~~~d~lil~GG~~~~ 50 (215)
+|+|+.-.+.- ..+.++|+ ..|+++.+-.. . .+ + .++|.+|.-||-++.
T Consensus 196 ~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDGTl 275 (508)
T PLN02935 196 TVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDGTV 275 (508)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCcHHH
Confidence 78888776642 23566677 47887765321 0 11 2 258999999997765
Q ss_pred HHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 51 MARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 51 ~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
+. ..+.+...++|||||=+|.
T Consensus 276 L~----------Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 276 LW----------AASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred HH----------HHHHhccCCCcEEEEeCCC
Confidence 32 2334444689999998773
No 196
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=72.25 E-value=17 Score=28.68 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=42.0
Q ss_pred HHHHHHHHHCCCeEEE---ECCC-C--------CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010 13 NEHIAALKRLGVKGVE---IRKP-D--------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (215)
Q Consensus 13 ~s~~~~l~~~G~~v~~---~~~~-~--------~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G 80 (215)
..+.+.|++.|+++.. +.+. + .++.+|.||.+||.+...+++- .+.+.++. ++++.+.=--
T Consensus 22 ~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t-----~ea~~~~~--~~~l~~~~e~ 94 (170)
T cd00885 22 AFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDDLT-----REAVAKAF--GRPLVLDEEA 94 (170)
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCChH-----HHHHHHHh--CCCcccCHHH
Confidence 3567889999998654 3332 1 1246899999998543222221 24454443 6777777666
Q ss_pred HHHHHHhhc
Q 028010 81 LIFLANKAV 89 (215)
Q Consensus 81 ~QlLa~~~~ 89 (215)
.+.|-+.+.
T Consensus 95 ~~~i~~~~~ 103 (170)
T cd00885 95 LERIEARFA 103 (170)
T ss_pred HHHHHHHHH
Confidence 666665553
No 197
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=71.17 E-value=25 Score=27.40 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=42.8
Q ss_pred EEEEEecCCChH-------HHHHHHHHCCCeE---EEECCCC------------CCCCcCEEEEcC----CCcchHHHHH
Q 028010 2 VVGVLALQGSFN-------EHIAALKRLGVKG---VEIRKPD------------QLQNVSSLIIPG----GESTTMARLA 55 (215)
Q Consensus 2 ~v~il~~~G~~~-------s~~~~l~~~G~~v---~~~~~~~------------~l~~~d~lil~G----G~~~~~~~l~ 55 (215)
||+|+.-+-|.. ...+.|++.|.+. .+++.|- .-.+||++|..| |....++...
T Consensus 14 riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va 93 (152)
T COG0054 14 RIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGETYHFDYVA 93 (152)
T ss_pred eEEEEEeehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCCccHHHHH
Confidence 788887555432 2456788888654 3555442 124699999888 4444444443
Q ss_pred hhCCHHHHHHHHHHcCCcEE
Q 028010 56 EYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 56 ~~~~l~~~i~~~~~~~~Pil 75 (215)
. .-.....+-.++.++||.
T Consensus 94 ~-~~~~gl~~vsl~~~~PV~ 112 (152)
T COG0054 94 N-EVARGLMDVSLETGVPVT 112 (152)
T ss_pred H-HHHHHHHHHHHhhCCCeE
Confidence 2 222344555667899964
No 198
>PRK06703 flavodoxin; Provisional
Probab=70.79 E-value=17 Score=27.59 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=28.7
Q ss_pred CEEEEEecC--CChH----HHHHHHHHCCCeEEEECCC----CCCCCcCEEEEc
Q 028010 1 MVVGVLALQ--GSFN----EHIAALKRLGVKGVEIRKP----DQLQNVSSLIIP 44 (215)
Q Consensus 1 m~v~il~~~--G~~~----s~~~~l~~~G~~v~~~~~~----~~l~~~d~lil~ 44 (215)
|||.|+-+. |+=. .+.+.|+..|+++.+.+.. .++.++|.|++.
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~viig 55 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILG 55 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEEE
Confidence 588888764 3333 2445677778887766532 356789988884
No 199
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=70.30 E-value=11 Score=30.36 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=20.2
Q ss_pred CEEEEEecC--CChH----HHHHHHHH-CCCeEEEECC
Q 028010 1 MVVGVLALQ--GSFN----EHIAALKR-LGVKGVEIRK 31 (215)
Q Consensus 1 m~v~il~~~--G~~~----s~~~~l~~-~G~~v~~~~~ 31 (215)
|||+|+-.. |+-. .+.+.+++ .|+++++++.
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 489998874 3322 34556666 8888877653
No 200
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=70.03 E-value=16 Score=30.06 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=42.1
Q ss_pred HHHHHHHHCCCeEEEE--CCCC------CCCCcCEEEEcCCCc-chHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 14 EHIAALKRLGVKGVEI--RKPD------QLQNVSSLIIPGGES-TTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~--~~~~------~l~~~d~lil~GG~~-~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
.+...|++.|++|++. .+++ .|.++|.||.-+-.. +.+.. ...+.+.+++++|+-++|+=.|+
T Consensus 27 ~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~l~~-----eq~~~l~~~V~~GgGlv~lHsg~ 98 (215)
T cd03142 27 TIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDEVKD-----EIVERVHRRVLDGMGLIVLHSGH 98 (215)
T ss_pred HHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCcCCH-----HHHHHHHHHHHcCCCEEEECCCc
Confidence 3567899999998843 3332 478999999844211 11111 12456788899999999998876
No 201
>PRK01215 competence damage-inducible protein A; Provisional
Probab=69.85 E-value=22 Score=30.17 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=30.7
Q ss_pred EEEEEecCC----------ChHHHHHHHHHCCCeEEEE---CCC-C--------CCCCcCEEEEcCCCc
Q 028010 2 VVGVLALQG----------SFNEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGES 48 (215)
Q Consensus 2 ~v~il~~~G----------~~~s~~~~l~~~G~~v~~~---~~~-~--------~l~~~d~lil~GG~~ 48 (215)
||+|+.... |-..+.+.|++.|+++... .+. + .++++|.||++||.+
T Consensus 5 ~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 5 FAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred EEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 788876422 2334677899999987543 332 1 134689999999854
No 202
>PRK03670 competence damage-inducible protein A; Provisional
Probab=69.78 E-value=18 Score=30.60 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=31.0
Q ss_pred CEEEEEecCC----------ChHHHHHHHHHCCCeEEEE---CCC-C--------CCC-CcCEEEEcCCC
Q 028010 1 MVVGVLALQG----------SFNEHIAALKRLGVKGVEI---RKP-D--------QLQ-NVSSLIIPGGE 47 (215)
Q Consensus 1 m~v~il~~~G----------~~~s~~~~l~~~G~~v~~~---~~~-~--------~l~-~~d~lil~GG~ 47 (215)
||++||.... |...+.+.|+++|+++..+ .+. + .+. .+|.||++||.
T Consensus 1 m~a~Ii~iGdEll~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGl 70 (252)
T PRK03670 1 MFAEIITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGL 70 (252)
T ss_pred CEEEEEEeCCcCcCCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCc
Confidence 7888887432 2334678899999987543 332 1 123 47999999974
No 203
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=69.10 E-value=27 Score=27.32 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=30.5
Q ss_pred EEEEEecCC--------ChHHHHHHHHHCCCeEEEE---CCC-C-------C---CCCcCEEEEcCCCc
Q 028010 2 VVGVLALQG--------SFNEHIAALKRLGVKGVEI---RKP-D-------Q---LQNVSSLIIPGGES 48 (215)
Q Consensus 2 ~v~il~~~G--------~~~s~~~~l~~~G~~v~~~---~~~-~-------~---l~~~d~lil~GG~~ 48 (215)
||+|+.... |-..+...|++.|+++... .+. + + ..++|.||++||.+
T Consensus 6 rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 6 RIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred EEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 677875433 3335667899999987543 332 1 1 23699999999854
No 204
>PRK06756 flavodoxin; Provisional
Probab=68.27 E-value=17 Score=27.42 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=29.6
Q ss_pred CEEEEEecC--CChH----HHHHHHHHCCCeEEEECCC-----CCCCCcCEEEEcC
Q 028010 1 MVVGVLALQ--GSFN----EHIAALKRLGVKGVEIRKP-----DQLQNVSSLIIPG 45 (215)
Q Consensus 1 m~v~il~~~--G~~~----s~~~~l~~~G~~v~~~~~~-----~~l~~~d~lil~G 45 (215)
|||.|+-+. |+-. .+.+.|+..|+++.+.+.. .++.++|.|++.-
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gs 57 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGA 57 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEe
Confidence 588888764 4433 3456677788888765432 3456899988864
No 205
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=68.19 E-value=24 Score=26.74 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=32.1
Q ss_pred CEEEEEecCCChHHH-HHHHHHCCC--eEEEECCC-----------------------------CCCCCcCEEEEcCCC
Q 028010 1 MVVGVLALQGSFNEH-IAALKRLGV--KGVEIRKP-----------------------------DQLQNVSSLIIPGGE 47 (215)
Q Consensus 1 m~v~il~~~G~~~s~-~~~l~~~G~--~v~~~~~~-----------------------------~~l~~~d~lil~GG~ 47 (215)
|||+|+-..|+..+. ...|...++ ++.+++.. +++.++|.+|++.|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 899999998887753 344544443 45555432 346789999999985
No 206
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=67.89 E-value=22 Score=27.30 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=30.0
Q ss_pred EEEEEec-----CC-----ChHHHHHHHHHCCCeEEEE---CCC-C--------CCC--CcCEEEEcCCCc
Q 028010 2 VVGVLAL-----QG-----SFNEHIAALKRLGVKGVEI---RKP-D--------QLQ--NVSSLIIPGGES 48 (215)
Q Consensus 2 ~v~il~~-----~G-----~~~s~~~~l~~~G~~v~~~---~~~-~--------~l~--~~d~lil~GG~~ 48 (215)
||+|+.. .| |-..+...|++.|+++... .+. + .++ .+|.||.+||.+
T Consensus 2 ~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 2 RAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred EEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 6777753 22 2334667899999986554 222 1 123 699999999854
No 207
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=67.74 E-value=43 Score=26.08 Aligned_cols=73 Identities=25% Similarity=0.275 Sum_probs=42.8
Q ss_pred EEEEEecCCChH-------HHHHHHHHCCC---eEEEECCCC---------CC---CCcCEEEEcC----CCcchHHHHH
Q 028010 2 VVGVLALQGSFN-------EHIAALKRLGV---KGVEIRKPD---------QL---QNVSSLIIPG----GESTTMARLA 55 (215)
Q Consensus 2 ~v~il~~~G~~~-------s~~~~l~~~G~---~v~~~~~~~---------~l---~~~d~lil~G----G~~~~~~~l~ 55 (215)
||+|+.-+=|.. ...+.|++.|+ ++.+++.|- .+ .+||++|..| |....++.+.
T Consensus 14 riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T~H~e~V~ 93 (154)
T PRK00061 14 RIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAESGKYDAVIALGAVIRGETPHFDYVA 93 (154)
T ss_pred EEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCCchHHHHH
Confidence 888888654422 35667888893 456665441 11 4699999998 4444444443
Q ss_pred hhCCHHHHHHHHHHcCCcEE
Q 028010 56 EYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 56 ~~~~l~~~i~~~~~~~~Pil 75 (215)
. .-...+++-.++.++|+.
T Consensus 94 ~-~v~~gl~~v~l~~~~PV~ 112 (154)
T PRK00061 94 N-EVAKGLADVSLETGVPVG 112 (154)
T ss_pred H-HHHHHHHHHHhccCCCEE
Confidence 2 111234455556789953
No 208
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=66.63 E-value=49 Score=27.98 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=32.5
Q ss_pred EEEEEecC--CC------hHHHHHHHHHCCCeEEEEC--CCCC-------C--CCcCEEEEcCCCcch
Q 028010 2 VVGVLALQ--GS------FNEHIAALKRLGVKGVEIR--KPDQ-------L--QNVSSLIIPGGESTT 50 (215)
Q Consensus 2 ~v~il~~~--G~------~~s~~~~l~~~G~~v~~~~--~~~~-------l--~~~d~lil~GG~~~~ 50 (215)
|+.|+..+ |. +..+.+.|++.|+++.+.. ...+ . ..+|.||+.||-++.
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl 70 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTI 70 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChH
Confidence 88888876 53 2246677888998876543 2211 1 357899999997654
No 209
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=65.89 E-value=13 Score=31.80 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=25.4
Q ss_pred CEEEEEecCCChHH---HHHHHHHCCCeEEEECC
Q 028010 1 MVVGVLALQGSFNE---HIAALKRLGVKGVEIRK 31 (215)
Q Consensus 1 m~v~il~~~G~~~s---~~~~l~~~G~~v~~~~~ 31 (215)
|||+||....+..| +.++++++|+++..++.
T Consensus 1 m~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~ 34 (300)
T PRK10446 1 MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDP 34 (300)
T ss_pred CeEEEEecCCcchhHHHHHHHHHHcCCeEEEEeh
Confidence 89999997766554 78899999999988763
No 210
>PLN02727 NAD kinase
Probab=65.52 E-value=20 Score=35.81 Aligned_cols=70 Identities=20% Similarity=0.130 Sum_probs=45.3
Q ss_pred EEEEEecCCCh-----HHHHHHHHHC-CCeEEEECCC---------------------CCC-CCcCEEEEcCCCcchHHH
Q 028010 2 VVGVLALQGSF-----NEHIAALKRL-GVKGVEIRKP---------------------DQL-QNVSSLIIPGGESTTMAR 53 (215)
Q Consensus 2 ~v~il~~~G~~-----~s~~~~l~~~-G~~v~~~~~~---------------------~~l-~~~d~lil~GG~~~~~~~ 53 (215)
+|+|+.-.++- ..+.++|... |+++.+-... .++ ..+|.+|.-||-++.+.
T Consensus 680 tVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDGTlLr- 758 (986)
T PLN02727 680 TVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILH- 758 (986)
T ss_pred EEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCcHHHHH-
Confidence 78888876641 1356778876 8887643210 112 25899999999776532
Q ss_pred HHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 54 LAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 54 l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
..+.+...++|||||=+|.
T Consensus 759 ---------Aar~~~~~~iPILGINlGr 777 (986)
T PLN02727 759 ---------ASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred ---------HHHHhcCCCCCEEEEeCCC
Confidence 2334445689999999884
No 211
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=65.52 E-value=8.2 Score=32.51 Aligned_cols=38 Identities=24% Similarity=0.601 Sum_probs=28.1
Q ss_pred CCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 34 ~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
+++++|.+|.-||-++.+ ..++.+...++|+|||=.|.
T Consensus 22 ~~~~~Dlvi~iGGDGTlL----------~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 22 PIEEADVIVALGGDGFML----------QTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred CcccCCEEEEECCCHHHH----------HHHHHhcCCCCeEEEEeCCC
Confidence 556789999999976543 33445555689999999885
No 212
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.49 E-value=28 Score=31.62 Aligned_cols=30 Identities=27% Similarity=0.196 Sum_probs=25.9
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEECC
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRK 31 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~ 31 (215)
||.|+-+.|.-.+..+.|.++|++|...+.
T Consensus 11 ~i~viG~G~~G~~~a~~l~~~G~~v~~~D~ 40 (460)
T PRK01390 11 TVAVFGLGGSGLATARALVAGGAEVIAWDD 40 (460)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEECC
Confidence 789999988888889999999999887763
No 213
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.79 E-value=51 Score=29.65 Aligned_cols=30 Identities=10% Similarity=-0.099 Sum_probs=26.3
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEECC
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK 31 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~ 31 (215)
|||.|+-+.+.-.++.+.|+ .|++|...+.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~ 30 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDD 30 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcC
Confidence 89999999888789999999 9999888763
No 214
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.27 E-value=44 Score=30.62 Aligned_cols=29 Identities=10% Similarity=-0.141 Sum_probs=23.6
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEEC
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~ 30 (215)
||+|+-+.-+=.+..+.|.+.|+++.+.+
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d 38 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTL 38 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEc
Confidence 78888885455678899999999988776
No 215
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=64.24 E-value=51 Score=24.63 Aligned_cols=46 Identities=20% Similarity=0.092 Sum_probs=27.9
Q ss_pred CEEEEEec--CCChHHH----HHHHHHCCCeEEE-ECC------CCCCCCcCEEEEcCC
Q 028010 1 MVVGVLAL--QGSFNEH----IAALKRLGVKGVE-IRK------PDQLQNVSSLIIPGG 46 (215)
Q Consensus 1 m~v~il~~--~G~~~s~----~~~l~~~G~~v~~-~~~------~~~l~~~d~lil~GG 46 (215)
|||.|+-. .|+-..+ .+.|+..|+++++ .+. ..++.++|.|++..+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~ 59 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTW 59 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcC
Confidence 88888775 4554433 4555666887762 221 124567898888653
No 216
>PRK06242 flavodoxin; Provisional
Probab=63.98 E-value=42 Score=25.11 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=30.4
Q ss_pred CEEEEEecC---CChHHHHHHHH-HCCCeEEEECC--CCCCCCcCEEEEcCC
Q 028010 1 MVVGVLALQ---GSFNEHIAALK-RLGVKGVEIRK--PDQLQNVSSLIIPGG 46 (215)
Q Consensus 1 m~v~il~~~---G~~~s~~~~l~-~~G~~v~~~~~--~~~l~~~d~lil~GG 46 (215)
||+.|+-+. |+=..+++.+. .++.++..+.. ..++.++|.||+...
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~~~~~i~~~~~~~~~~~d~ii~g~p 52 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLDAEVIDPGDVNPEDLSEYDLIGFGSG 52 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcCcEEecHHHCCcccHhHCCEEEEeCc
Confidence 888888874 56666666654 45666554433 245678999888653
No 217
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=63.25 E-value=8.9 Score=29.48 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=20.7
Q ss_pred HHHHHHCCCeEEEECCCC----------CCCCcCEEEE-cCCCc
Q 028010 16 IAALKRLGVKGVEIRKPD----------QLQNVSSLII-PGGES 48 (215)
Q Consensus 16 ~~~l~~~G~~v~~~~~~~----------~l~~~d~lil-~GG~~ 48 (215)
.+..+++|+++....... ..+++|++|| ||+..
T Consensus 35 ~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~t 78 (140)
T PF01220_consen 35 KETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYT 78 (140)
T ss_dssp HHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGG
T ss_pred HHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhc
Confidence 344556788888765431 2356999988 88865
No 218
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.20 E-value=30 Score=31.52 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=23.5
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEEC
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~ 30 (215)
||+|+-+.+.=.++.+.|.+.|++|...+
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D 44 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFD 44 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEEC
Confidence 78888887766688888999998887765
No 219
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=61.99 E-value=16 Score=32.14 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=37.2
Q ss_pred HHHHHHHHCCCeEEEECC---CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 14 EHIAALKRLGVKGVEIRK---PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~---~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+.+.|.+.|++.+.+.. ..+++.+|+||--||-++.+ +.+ .+.++..+||+||
T Consensus 79 ~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL--~Aa--------srv~~~~~PViGv 135 (395)
T KOG4180|consen 79 FCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFL--LAA--------SRVIDDSKPVIGV 135 (395)
T ss_pred HHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCcccee--ehh--------hhhhccCCceeee
Confidence 356677888998777642 35688899999999876532 111 1244578999998
No 220
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=61.76 E-value=30 Score=33.37 Aligned_cols=62 Identities=18% Similarity=0.159 Sum_probs=40.6
Q ss_pred HHHHHHCCCeEEEECC-----CCCCCCcCEEEEcCCCcc----hHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010 16 IAALKRLGVKGVEIRK-----PDQLQNVSSLIIPGGEST----TMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (215)
Q Consensus 16 ~~~l~~~G~~v~~~~~-----~~~l~~~d~lil~GG~~~----~~~~l~~~~~l~~~i~~~~~~~~PilGIC~ 79 (215)
.++|.-+-++|+.++- ..-+++.|.||-.|...+ ...|.. ..+.+.|++++++|.-++|++-
T Consensus 474 lE~LSG~p~dV~FisFdDi~~~gi~~didViIN~G~a~ta~SGG~~W~d--~~~~~aLr~fV~~GGglIGVgD 544 (719)
T TIGR02336 474 LECLSGMPVEVEFISFDDILEHGIDSDIDVIINGGDADTAWSGGDVWTN--PKLVETVRAWVRGGGGFVGVGE 544 (719)
T ss_pred HHHhcCCCeeEEEecHHHHhhcCCCcCCcEEEecCcccccccCccccCC--HHHHHHHHHHHHcCCeEEEEEC
Confidence 4444434467777752 134568899999884322 222332 3567899999999999999874
No 221
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=61.47 E-value=22 Score=26.56 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=24.2
Q ss_pred HHHHHHHHCCCeEEEE---CCC-C--------CCCCcCEEEEcCCCc
Q 028010 14 EHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGES 48 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~---~~~-~--------~l~~~d~lil~GG~~ 48 (215)
.+.+.|++.|+++... .+. + .++++|.||.+||.+
T Consensus 23 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g 69 (133)
T cd00758 23 ALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG 69 (133)
T ss_pred HHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 4667899999987654 221 1 134689999999854
No 222
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=61.18 E-value=47 Score=25.74 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=23.2
Q ss_pred ChHHHHHHH----HHCCCeEEEECCC----------CCCCCcCEEEE-cCCCc
Q 028010 11 SFNEHIAAL----KRLGVKGVEIRKP----------DQLQNVSSLII-PGGES 48 (215)
Q Consensus 11 ~~~s~~~~l----~~~G~~v~~~~~~----------~~l~~~d~lil-~GG~~ 48 (215)
++.++.+.+ +.+|+++...... +..+++|++|| ||++.
T Consensus 27 tl~~i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~T 79 (146)
T PRK13015 27 TLADVEALCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYT 79 (146)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHh
Confidence 344554444 4568888876543 12346899888 77765
No 223
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=60.73 E-value=21 Score=28.67 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=18.8
Q ss_pred CEEEEEecC--CChHH----HHHHHHHC-CCeEEEEC
Q 028010 1 MVVGVLALQ--GSFNE----HIAALKRL-GVKGVEIR 30 (215)
Q Consensus 1 m~v~il~~~--G~~~s----~~~~l~~~-G~~v~~~~ 30 (215)
|||+|+-.. |+-.. +.+.+++. |+++++++
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~ 37 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKR 37 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 688888764 44333 34456655 88887765
No 224
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=60.67 E-value=46 Score=28.40 Aligned_cols=70 Identities=21% Similarity=0.280 Sum_probs=43.7
Q ss_pred CEEEEEecCCCh------HHHHHHHHHCCCeEEEECCC----C--------CCCCcCEEEEcCCCcchHHHHHhhCCHHH
Q 028010 1 MVVGVLALQGSF------NEHIAALKRLGVKGVEIRKP----D--------QLQNVSSLIIPGGESTTMARLAEYHNLFP 62 (215)
Q Consensus 1 m~v~il~~~G~~------~s~~~~l~~~G~~v~~~~~~----~--------~l~~~d~lil~GG~~~~~~~l~~~~~l~~ 62 (215)
|+|+|..-...- ..+...+...+.++.+.... . +.+.+|.+++.||-++.. .
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGDGtlL----------~ 70 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGDGTLL----------R 70 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCcHHHH----------H
Confidence 577887766642 23455666677776654321 1 114588888888866542 2
Q ss_pred HHHHHHHcCCcEEEEehH
Q 028010 63 ALREFVKMGKPVWGTCAG 80 (215)
Q Consensus 63 ~i~~~~~~~~PilGIC~G 80 (215)
..+...+.++|++||=.|
T Consensus 71 ~~~~~~~~~~pilgin~G 88 (281)
T COG0061 71 AARLLARLDIPVLGINLG 88 (281)
T ss_pred HHHHhccCCCCEEEEeCC
Confidence 334444567999999999
No 225
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=59.16 E-value=49 Score=28.54 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=39.7
Q ss_pred CEEEEEecCC--ChHHHHHHHHHCC--CeEEEECCC-----------------CCC---CCcCEEEE-cC-CCcchHHHH
Q 028010 1 MVVGVLALQG--SFNEHIAALKRLG--VKGVEIRKP-----------------DQL---QNVSSLII-PG-GESTTMARL 54 (215)
Q Consensus 1 m~v~il~~~G--~~~s~~~~l~~~G--~~v~~~~~~-----------------~~l---~~~d~lil-~G-G~~~~~~~l 54 (215)
.||||+.-.. .+..+.+-+++.+ +++.++... ... ..+|.||| -| |.-..+..+
T Consensus 15 ~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~F 94 (319)
T PF02601_consen 15 KRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAF 94 (319)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhccc
Confidence 3789988644 3556777777665 455554421 011 25898887 34 332222222
Q ss_pred HhhCCHHHHHHHHHHcCCcEE
Q 028010 55 AEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 55 ~~~~~l~~~i~~~~~~~~Pil 75 (215)
.. ....+...+..+||+
T Consensus 95 N~----e~varai~~~~~Pvi 111 (319)
T PF02601_consen 95 ND----EEVARAIAASPIPVI 111 (319)
T ss_pred Ch----HHHHHHHHhCCCCEE
Confidence 22 355666666789965
No 226
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=59.04 E-value=50 Score=26.67 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=29.1
Q ss_pred CEEEEEecCC----------ChHHHHHHHHHCCCe---E--EEECCC-C--------CCC--CcCEEEEcCCCc
Q 028010 1 MVVGVLALQG----------SFNEHIAALKRLGVK---G--VEIRKP-D--------QLQ--NVSSLIIPGGES 48 (215)
Q Consensus 1 m~v~il~~~G----------~~~s~~~~l~~~G~~---v--~~~~~~-~--------~l~--~~d~lil~GG~~ 48 (215)
||++||.... |-..+...|++.|.+ + .++.+. + .++ ++|.||.+||.+
T Consensus 4 ~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg 77 (193)
T PRK09417 4 LKIGLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTG 77 (193)
T ss_pred cEEEEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 4788886433 223467788888653 2 233332 1 122 699999999854
No 227
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.64 E-value=52 Score=29.70 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=22.9
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEEC
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~ 30 (215)
||.|+-..+.=.+..+.|.+.|++|...+
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d 35 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYD 35 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 78888887766678888999998877664
No 228
>PRK05569 flavodoxin; Provisional
Probab=58.56 E-value=26 Score=26.12 Aligned_cols=44 Identities=7% Similarity=0.076 Sum_probs=28.8
Q ss_pred EEEEEecCC--ChH----HHHHHHHHCCCeEEEECCC----CCCCCcCEEEEcC
Q 028010 2 VVGVLALQG--SFN----EHIAALKRLGVKGVEIRKP----DQLQNVSSLIIPG 45 (215)
Q Consensus 2 ~v~il~~~G--~~~----s~~~~l~~~G~~v~~~~~~----~~l~~~d~lil~G 45 (215)
||.|+-+.. |=. .+.+.+++.|+++.+.+.. .++.++|+|++.-
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgs 56 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVLEADAVAFGS 56 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHhhCCEEEEEC
Confidence 788887754 322 2345566679888776533 2556899998855
No 229
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.43 E-value=43 Score=30.90 Aligned_cols=29 Identities=24% Similarity=0.139 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEEC
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~ 30 (215)
||+|+-+...=.+..+.|...|+++...+
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D 42 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCD 42 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEc
Confidence 66777765555566677888888777665
No 230
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=58.39 E-value=63 Score=24.45 Aligned_cols=69 Identities=26% Similarity=0.409 Sum_probs=39.6
Q ss_pred EEEEEecCCChHHHHHHHHHC---C--CeEEEECCCCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010 2 VVGVLALQGSFNEHIAALKRL---G--VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~---G--~~v~~~~~~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG 76 (215)
+|+|+.-+. +......+... | +.++.+....++.+||.|++..+...... +.++.. .++|+|-
T Consensus 29 ~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~~~~~~~~C~ilyi~~~~~~~~~---------~i~~~~--~~~~vLt 96 (145)
T PF13689_consen 29 RICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLSSPNEISGCHILYISSSESSQLP---------EILRKL--PGKPVLT 96 (145)
T ss_pred EEEEECChH-HHHHHHHhhhcccCCCcEEEEECCCCcccccccEEEECCCChHHHH---------HHHHhc--CCCceEE
Confidence 567765433 33333333311 3 34444556677889999999887643221 222222 5899999
Q ss_pred EehHHH
Q 028010 77 TCAGLI 82 (215)
Q Consensus 77 IC~G~Q 82 (215)
||-+-.
T Consensus 97 Isd~~~ 102 (145)
T PF13689_consen 97 ISDGEG 102 (145)
T ss_pred EECCCC
Confidence 987643
No 231
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=57.88 E-value=58 Score=29.53 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=25.5
Q ss_pred HHHHHHHHCCCeEEEEC---CC---------CCCCCcCEEEEcCCCcc
Q 028010 14 EHIAALKRLGVKGVEIR---KP---------DQLQNVSSLIIPGGEST 49 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~---~~---------~~l~~~d~lil~GG~~~ 49 (215)
.+...|++.|+++.... +. +.++++|.||.+||.+-
T Consensus 207 ~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~Sv 254 (404)
T COG0303 207 MLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGVSV 254 (404)
T ss_pred HHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCccC
Confidence 46778999999776543 21 12356999999998653
No 232
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=57.41 E-value=24 Score=28.86 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=42.8
Q ss_pred HHHHHHHHCCCeEEEECC-------C---CCCCCcCEEEEcC-CCcc------hHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010 14 EHIAALKRLGVKGVEIRK-------P---DQLQNVSSLIIPG-GEST------TMARLAEYHNLFPALREFVKMGKPVWG 76 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~-------~---~~l~~~d~lil~G-G~~~------~~~~l~~~~~l~~~i~~~~~~~~PilG 76 (215)
.+.++|+.-++++..... | +.++.||+|||.- |..+ ..-..+-..+..++|++++++|.-+|-
T Consensus 36 ~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV~~GGGLLM 115 (254)
T COG5426 36 PLLKALRGGEYDVTYMPAHDAQEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYVENGGGLLM 115 (254)
T ss_pred HHHHHHhCCCcceEEechHHHHHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHHHHHhcCCcEEE
Confidence 467889888898877542 2 4567899999975 4221 110111124557899999999877776
Q ss_pred Ee
Q 028010 77 TC 78 (215)
Q Consensus 77 IC 78 (215)
|.
T Consensus 116 iG 117 (254)
T COG5426 116 IG 117 (254)
T ss_pred Ec
Confidence 64
No 233
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.57 E-value=40 Score=27.61 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=22.7
Q ss_pred HHHHHHHHCCCeEEEECCCCC-------C-----CCcCEEEEcCC
Q 028010 14 EHIAALKRLGVKGVEIRKPDQ-------L-----QNVSSLIIPGG 46 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~-------l-----~~~d~lil~GG 46 (215)
.+.+++++.|+++.+.....+ + .++|+||+.+.
T Consensus 20 ~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 20 AAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 356788889999887654211 1 36899999754
No 234
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=56.47 E-value=39 Score=30.59 Aligned_cols=76 Identities=9% Similarity=0.085 Sum_probs=42.5
Q ss_pred EEEEecCCChHH-HHHHHHHCCCeEEEECCC---------------------CCCCCcCEEEEcCCCcchHHHH---Hh-
Q 028010 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIPGGESTTMARL---AE- 56 (215)
Q Consensus 3 v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~---------------------~~l~~~d~lil~GG~~~~~~~l---~~- 56 (215)
|-++-..|.-.+ +.+.|.+.|++|...+.. +.++++|.||++.|.+...+.+ .+
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 556666666665 777888888877666521 1234689888876643211111 11
Q ss_pred ---hCCHHHHHHHHHHcCCcEEEEeh
Q 028010 57 ---YHNLFPALREFVKMGKPVWGTCA 79 (215)
Q Consensus 57 ---~~~l~~~i~~~~~~~~PilGIC~ 79 (215)
..+-.+++.+..+ ++|+.||..
T Consensus 82 ~i~v~~~~el~~~~~~-~~~~IaITG 106 (448)
T TIGR01082 82 GIPVIRRAEMLAELMR-FRHSIAVAG 106 (448)
T ss_pred CCceEeHHHHHHHHHh-cCcEEEEEC
Confidence 0122344444443 467888874
No 235
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.47 E-value=45 Score=30.58 Aligned_cols=29 Identities=28% Similarity=0.027 Sum_probs=22.7
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEEC
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~ 30 (215)
||.|+-+.|.=.++.+.|.+.|+++...+
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G~~V~~~D 45 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELGCDVVVAD 45 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEEC
Confidence 68888887776678888888888776655
No 236
>PRK06444 prephenate dehydrogenase; Provisional
Probab=54.58 E-value=35 Score=27.66 Aligned_cols=38 Identities=11% Similarity=0.180 Sum_probs=30.9
Q ss_pred CEEEEEecCCChHH-HHHHHHHCCCeEEEECCCCCCCCcCEEEEcC
Q 028010 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (215)
Q Consensus 1 m~v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~~l~~~d~lil~G 45 (215)
|||+|+-=.|.... +.+.|++.|+.+. +.++|.||+.=
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------~~~~DlVilav 39 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------IKKADHAFLSV 39 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------ECCCCEEEEeC
Confidence 89999998888776 4678999999986 46789999863
No 237
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=54.26 E-value=50 Score=25.59 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=23.1
Q ss_pred hHHHHHHH----HHCCCeEEEECCC----------CCCCCcCEEEE-cCCCc
Q 028010 12 FNEHIAAL----KRLGVKGVEIRKP----------DQLQNVSSLII-PGGES 48 (215)
Q Consensus 12 ~~s~~~~l----~~~G~~v~~~~~~----------~~l~~~d~lil-~GG~~ 48 (215)
+.++.+.+ +.+|+++...... +..+++|++|| ||++.
T Consensus 28 l~~i~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~T 79 (146)
T PRK05395 28 LADIEALLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYT 79 (146)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHH
Confidence 44554444 4568888776543 12346899998 77765
No 238
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.58 E-value=83 Score=28.22 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=24.9
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEEC
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~ 30 (215)
||.|+-+.+.=.++.+.|++.|.++...+
T Consensus 5 ~i~iiGlG~~G~slA~~l~~~G~~V~g~D 33 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQKGVYVIGVD 33 (418)
T ss_pred eEEEEEECHHHHHHHHHHHHCCCEEEEEe
Confidence 79999998877899999999999877655
No 239
>PRK05568 flavodoxin; Provisional
Probab=50.50 E-value=43 Score=24.82 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=29.0
Q ss_pred EEEEEecCC--ChH----HHHHHHHHCCCeEEEECCC----CCCCCcCEEEEcCC
Q 028010 2 VVGVLALQG--SFN----EHIAALKRLGVKGVEIRKP----DQLQNVSSLIIPGG 46 (215)
Q Consensus 2 ~v~il~~~G--~~~----s~~~~l~~~G~~v~~~~~~----~~l~~~d~lil~GG 46 (215)
+|.|+-+.. |=. .+.+.++..|+++++++.. .++.++|.|++.-.
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp 57 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSP 57 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECC
Confidence 577777644 433 2445666788988877543 24678999888653
No 240
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.17 E-value=72 Score=29.16 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=22.0
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEECC
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRK 31 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~ 31 (215)
||+|+-+.-.=.+..+.|.+ |+++.+.+.
T Consensus 8 ~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~ 36 (454)
T PRK01368 8 KIGVFGLGKTGISVYEELQN-KYDVIVYDD 36 (454)
T ss_pred EEEEEeecHHHHHHHHHHhC-CCEEEEECC
Confidence 78888875555678888885 999888763
No 241
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=49.55 E-value=42 Score=32.33 Aligned_cols=63 Identities=24% Similarity=0.218 Sum_probs=40.2
Q ss_pred HHHHHHHHCCCeEEEECCC-----CCCCCcCEEEEcCCCc----chHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010 14 EHIAALKRLGVKGVEIRKP-----DQLQNVSSLIIPGGES----TTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~-----~~l~~~d~lil~GG~~----~~~~~l~~~~~l~~~i~~~~~~~~PilGIC 78 (215)
.+.++|.-+-++|+.++-. .-++++|.||-.|... ....|.. ..+...||+++.+|.-++||+
T Consensus 469 GilEaLSGlp~dV~FISFdDi~~~gi~~didViINaGdA~TA~SGG~~W~d--~~iv~~lr~fV~~GGGfIGVG 540 (716)
T PF09508_consen 469 GILEALSGLPFDVEFISFDDIRENGILEDIDVIINAGDAGTAWSGGENWKD--PKIVTALREFVYNGGGFIGVG 540 (716)
T ss_dssp HHHHHHHTSSSEEEEEEHHHHHHH-S-TT--EEEEEESTTSTTT-GGGGG---HHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHhcCCCceeEEecHHHHhhcCCcccCCEEEecCcccccccCccccCC--HHHHHHHHHHHHcCCCEEEcC
Confidence 4566776667888887621 3467899999998432 2223332 356789999999999999986
No 242
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=48.92 E-value=1.2e+02 Score=23.40 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=42.6
Q ss_pred EEEEEecCCChH---HHHHHHHHCCCeEEEECCC--CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (215)
Q Consensus 2 ~v~il~~~G~~~---s~~~~l~~~G~~v~~~~~~--~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilG 76 (215)
||-++..+++.. .....|.+.|..+....+. ..+.+-|.+|+-.-.+.. +.+.+.++.+.+.|.|+++
T Consensus 32 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t-------~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 32 RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGET-------ESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred EEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCc-------HHHHHHHHHHHHCCCeEEE
Confidence 455666655543 2445677789888777543 234556776664421111 1124556666678999999
Q ss_pred Eeh
Q 028010 77 TCA 79 (215)
Q Consensus 77 IC~ 79 (215)
|+.
T Consensus 105 IT~ 107 (179)
T TIGR03127 105 ITT 107 (179)
T ss_pred EEC
Confidence 995
No 243
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=48.36 E-value=4.9 Score=23.87 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=10.3
Q ss_pred EEEEehHHHHHHHh
Q 028010 74 VWGTCAGLIFLANK 87 (215)
Q Consensus 74 ilGIC~G~QlLa~~ 87 (215)
..|-|+|+|++..+
T Consensus 32 tagacfgaqimvaa 45 (48)
T PF09075_consen 32 TAGACFGAQIMVAA 45 (48)
T ss_dssp S--TTTTTHHHHTT
T ss_pred ccccccchhhhhhc
Confidence 67889999999765
No 244
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=47.82 E-value=99 Score=29.12 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=41.7
Q ss_pred EEEEEecCCCh-----HHHHHHHHHCCCeEEEECC----------CCCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHH
Q 028010 2 VVGVLALQGSF-----NEHIAALKRLGVKGVEIRK----------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (215)
Q Consensus 2 ~v~il~~~G~~-----~s~~~~l~~~G~~v~~~~~----------~~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~ 66 (215)
||+++.=-|.. ..+.+.|+ .++++..++. ++++.++|.||+.|-..+-.+ .....|.+
T Consensus 185 ~V~~l~ghGE~~~~~~~~l~~~L~-~~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI~~P~~~ls~------~e~~~Ldq 257 (552)
T TIGR03521 185 RIAVLKGNGELADLQIADLVSTLK-EYYFIAPFTLDSVAANPAKTLADLKKFDLIVIAKPTEAFSE------REKYILDQ 257 (552)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHH-hcCceeeecchhcccCcccccccccCcCEEEEeCCCccCCH------HHHHHHHH
Confidence 67777754432 34566777 7777765543 223458999999985422111 11456788
Q ss_pred HHHcCCcEEE
Q 028010 67 FVKMGKPVWG 76 (215)
Q Consensus 67 ~~~~~~PilG 76 (215)
++.+|.++|-
T Consensus 258 fl~~GG~ll~ 267 (552)
T TIGR03521 258 YIMNGGKALF 267 (552)
T ss_pred HHHcCCeEEE
Confidence 8888877654
No 245
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=47.68 E-value=35 Score=25.61 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=22.0
Q ss_pred CEEEEEecCCChH-HHHHHHHHCCCeEEEEC
Q 028010 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIR 30 (215)
Q Consensus 1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~ 30 (215)
|||+|+-. |++. .+.++|.+.|..+.-+.
T Consensus 11 l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~ 40 (127)
T PF10727_consen 11 LKIGIIGA-GRVGTALARALARAGHEVVGVY 40 (127)
T ss_dssp -EEEEECT-SCCCCHHHHHHHHTTSEEEEES
T ss_pred cEEEEECC-CHHHHHHHHHHHHCCCeEEEEE
Confidence 68999987 5544 67899999999887663
No 246
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=47.34 E-value=78 Score=27.59 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=25.2
Q ss_pred CcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 37 ~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+++|||-| |.+..-. .+.+.|+++.++|+||.-.
T Consensus 235 ~~~GlVl~~~G~Gn~p~------~~~~~l~~a~~~gipVV~~ 270 (323)
T smart00870 235 GAKGLVLEGTGAGNVPP------DLLEALKEALERGIPVVRT 270 (323)
T ss_pred CCCEEEEEeeCCCCCCH------HHHHHHHHHHHCCCEEEEe
Confidence 579999987 6543322 2467888888899998876
No 247
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=47.12 E-value=15 Score=31.77 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=25.3
Q ss_pred CCCcCEEEEcCC-C-cchHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010 35 LQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (215)
Q Consensus 35 l~~~d~lil~GG-~-~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~ 79 (215)
+.++|.|||.-| + .+..+.|. ..-|++++++ .|+.+||-
T Consensus 180 I~~AD~IIlGPgsp~TSI~P~Ll-----VpgIreAL~~-a~vV~Vsp 220 (297)
T TIGR01819 180 IRKEDNILIGPSNPITSIGPILS-----LPGIREALRD-KKVVAVSP 220 (297)
T ss_pred HHhCCEEEECCCccHHHhhhhcC-----chhHHHHHHc-CCEEEEcc
Confidence 457898888444 3 34555553 3556666665 99999993
No 248
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=47.03 E-value=39 Score=25.14 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=24.7
Q ss_pred hHHHHHHHHHCCCeEEE---ECCC-C--------CCCCcCEEEEcCCCc
Q 028010 12 FNEHIAALKRLGVKGVE---IRKP-D--------QLQNVSSLIIPGGES 48 (215)
Q Consensus 12 ~~s~~~~l~~~G~~v~~---~~~~-~--------~l~~~d~lil~GG~~ 48 (215)
-..+...|++.|+++.. +.+. + .++.+|.||..||.+
T Consensus 20 ~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 20 GPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG 68 (135)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 34577889999987643 3322 1 124689999999854
No 249
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=46.81 E-value=1.1e+02 Score=24.82 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=23.4
Q ss_pred HHHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCC
Q 028010 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG 46 (215)
++.+++++.|+++.+.....+ + .++|++|+.+.
T Consensus 20 ~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 20 SIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 466788889999988754311 1 36899999764
No 250
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=45.25 E-value=1.3e+02 Score=24.27 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=22.8
Q ss_pred HHHHHHHHCCCeEEEECCCCC-------C-----CCcCEEEEcCC
Q 028010 14 EHIAALKRLGVKGVEIRKPDQ-------L-----QNVSSLIIPGG 46 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~-------l-----~~~d~lil~GG 46 (215)
.+.+++++.|+++.+.....+ + .++|+||+..+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 20 GTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 356788899999888754211 1 36899999654
No 251
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=44.89 E-value=46 Score=30.95 Aligned_cols=79 Identities=13% Similarity=0.152 Sum_probs=45.7
Q ss_pred CEEEEEecCCCh--HHHHHHHHHCCCeEEEECCC--CC-CCCcCEEEEcCC----CcchHHHHHhhCCHHHHHHHHHHcC
Q 028010 1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIRKP--DQ-LQNVSSLIIPGG----ESTTMARLAEYHNLFPALREFVKMG 71 (215)
Q Consensus 1 m~v~il~~~G~~--~s~~~~l~~~G~~v~~~~~~--~~-l~~~d~lil~GG----~~~~~~~l~~~~~l~~~i~~~~~~~ 71 (215)
|||.|++-+-++ ..+.+.|...|+++..+.-. .- ..+.+-|++.+. .+..|.+. +-....--+.+.+
T Consensus 386 frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~evtkvfLGahailsNG~vysR~----GTa~valvAna~n 461 (556)
T KOG1467|consen 386 FRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIMLEVTKVFLGAHAILSNGAVYSRV----GTACVALVANAFN 461 (556)
T ss_pred eEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHhcceeeechhhhhcCcchhhhc----chHHHHHHhcccC
Confidence 477777754433 35788899999987776532 11 234566666653 22344333 2222222233468
Q ss_pred CcEEEEehHHHH
Q 028010 72 KPVWGTCAGLIF 83 (215)
Q Consensus 72 ~PilGIC~G~Ql 83 (215)
+|+|-.|=-+-.
T Consensus 462 VPVlVCCE~yKF 473 (556)
T KOG1467|consen 462 VPVLVCCEAYKF 473 (556)
T ss_pred CCEEEEechhhh
Confidence 999999976543
No 252
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=44.47 E-value=18 Score=31.70 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=26.8
Q ss_pred CCCcCEEEE-cCCC-cchHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010 35 LQNVSSLII-PGGE-STTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (215)
Q Consensus 35 l~~~d~lil-~GG~-~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~ 79 (215)
+.++|.|++ ||+. .+.++.|.= .++.+.|++ +..|+++||.
T Consensus 187 I~~AD~IviGPgSl~TSIlP~Lll-p~I~eaLr~---~~ap~i~v~n 229 (323)
T COG0391 187 IKEADLIVIGPGSLFTSILPILLL-PGIAEALRE---TVAPIVYVCN 229 (323)
T ss_pred HHhCCEEEEcCCccHhhhchhhch-hHHHHHHHh---CCCCEEEecc
Confidence 457998888 5553 344554432 345566665 6899999994
No 253
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=44.46 E-value=1.7e+02 Score=23.75 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=37.2
Q ss_pred EEEEEec--CCChH-----HHHHHHHHCCCeEEEECC--CCC----------C--CCcCEEEEcCCCcchHHHHHhhCCH
Q 028010 2 VVGVLAL--QGSFN-----EHIAALKRLGVKGVEIRK--PDQ----------L--QNVSSLIIPGGESTTMARLAEYHNL 60 (215)
Q Consensus 2 ~v~il~~--~G~~~-----s~~~~l~~~G~~v~~~~~--~~~----------l--~~~d~lil~GG~~~~~~~l~~~~~l 60 (215)
||+|+.- ...+. .+.+++++.|+++.+... ..+ + .+.|++|+.+......
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~--------- 71 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNL--------- 71 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHh---------
Confidence 4677663 33232 345678888999877532 111 1 3689998865432211
Q ss_pred HHHHHHHHHcCCcEEEE
Q 028010 61 FPALREFVKMGKPVWGT 77 (215)
Q Consensus 61 ~~~i~~~~~~~~PilGI 77 (215)
.+.++.+.+.++|+..+
T Consensus 72 ~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 72 VPAVERAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHHHCCCeEEEE
Confidence 12233444578887665
No 254
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=44.42 E-value=1.6e+02 Score=23.82 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=35.6
Q ss_pred EEEEEe--cCCChH-----HHHHHHHHC---CC--eEEEECCCCC------------CCCcCEEEEcCCCcchHHHHHhh
Q 028010 2 VVGVLA--LQGSFN-----EHIAALKRL---GV--KGVEIRKPDQ------------LQNVSSLIIPGGESTTMARLAEY 57 (215)
Q Consensus 2 ~v~il~--~~G~~~-----s~~~~l~~~---G~--~v~~~~~~~~------------l~~~d~lil~GG~~~~~~~l~~~ 57 (215)
||+++. ++..+. .+.+++++. |. ++.+.+...+ -.++|++|+.+......
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~------ 74 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTAL------ 74 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhh------
Confidence 577766 333232 345667778 88 4555543211 13789999976432111
Q ss_pred CCHHHHHHHHHHcCCcEEEE
Q 028010 58 HNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 58 ~~l~~~i~~~~~~~~PilGI 77 (215)
.+.+..+.+.++|++.+
T Consensus 75 ---~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 75 ---NPVIEEACEAGIPVVSF 91 (272)
T ss_pred ---HHHHHHHHHCCCeEEEE
Confidence 12233444467776653
No 255
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=44.34 E-value=72 Score=26.09 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=33.5
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEECC------CC----CC-CCcCEEEEcC
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK------PD----QL-QNVSSLIIPG 45 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~------~~----~l-~~~d~lil~G 45 (215)
|||.|..-.+.-..+.+.|+++|+++..+.. .. .+ ..+|.||++.
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS 56 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTS 56 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEEC
Confidence 8999998888778889999999998766431 11 12 2478998875
No 256
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=44.17 E-value=67 Score=27.95 Aligned_cols=67 Identities=10% Similarity=0.146 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCeEEEECCCC---CCCCcCEEEEcC-CC---cchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHH
Q 028010 13 NEHIAALKRLGVKGVEIRKPD---QLQNVSSLIIPG-GE---STTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIF 83 (215)
Q Consensus 13 ~s~~~~l~~~G~~v~~~~~~~---~l~~~d~lil~G-G~---~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~Ql 83 (215)
....+.|++.|++++++.+.. -++++|.++++. +. +....+ .+-..+...+.+.++|++..|--+=+
T Consensus 160 ~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnk----iGT~~lA~~A~e~~~Pf~v~aesyKf 233 (301)
T COG1184 160 RIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNK----IGTSPLALAARELRVPFYVVAESYKF 233 (301)
T ss_pred HHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCcEEec----cchHHHHHHHHHhCCCEEEEeeeecc
Confidence 346789999999988887653 235678887765 31 111112 23334444555689999998865543
No 257
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=43.94 E-value=1.4e+02 Score=23.32 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=41.7
Q ss_pred ecCCChHHHHHHHH-HCCC-eEEEECCCCC-CCCcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010 7 ALQGSFNEHIAALK-RLGV-KGVEIRKPDQ-LQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (215)
Q Consensus 7 ~~~G~~~s~~~~l~-~~G~-~v~~~~~~~~-l~~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G 80 (215)
...||=.-+++++. .++. ++..+..... +.++|.|++..+.. ..... +.++|++.....+-++|+|..
T Consensus 6 S~TGNTkkvA~aI~~~l~~~~~~~~~~~~~~~~~yD~i~lG~w~d~G~~d~~------~~~fl~~l~~KkV~lF~T~G~ 78 (160)
T PF12641_consen 6 SRTGNTKKVAEAIAEALGAKDIVSVEEPPEDLEDYDLIFLGFWIDKGTPDKD------MKEFLKKLKGKKVALFGTAGA 78 (160)
T ss_pred CCCChHHHHHHHHHHHCCCceeEeccccccCCCCCCEEEEEcCccCCCCCHH------HHHHHHHccCCeEEEEEecCC
Confidence 35677777777765 4566 6665655444 88999999988632 22122 245555543345667888854
No 258
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=43.84 E-value=1.7e+02 Score=24.45 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=18.0
Q ss_pred EEEEEe-cCCChH-HHHHHHHHCCCeEEEE
Q 028010 2 VVGVLA-LQGSFN-EHIAALKRLGVKGVEI 29 (215)
Q Consensus 2 ~v~il~-~~G~~~-s~~~~l~~~G~~v~~~ 29 (215)
||+|+. |..... ...+.|++.|++|.-+
T Consensus 122 RIalvTPY~~~v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 122 RISLLTPYTPETSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCcEEeee
Confidence 666666 333333 3567788899987654
No 259
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=42.87 E-value=1e+02 Score=24.03 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=35.8
Q ss_pred HHHHHHH--CCCeEEEECCCC------------CCCCcCEEEEcC----CCcchHHHHHhhCCHHHHHHHHHHcCCcEEE
Q 028010 15 HIAALKR--LGVKGVEIRKPD------------QLQNVSSLIIPG----GESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (215)
Q Consensus 15 ~~~~l~~--~G~~v~~~~~~~------------~l~~~d~lil~G----G~~~~~~~l~~~~~l~~~i~~~~~~~~PilG 76 (215)
..+.|++ .|+++.+++.|- .-.+||++|..| |..+.++..... ..+.+-.++.++||.-
T Consensus 18 A~~~L~~~g~g~~i~v~~VPGa~EiP~aak~l~~~~~~DaVIaLG~VIrGeT~Hfd~V~vs---~GL~~lsl~~~~PVi~ 94 (151)
T TIGR01506 18 AIDELRKHTAGIKIIRRTVPGIKDLPVAAKKLLEEEGCEMVITLGWVGPEEKDKLSYHEAS---TGLIQVQLMTNKHVID 94 (151)
T ss_pred HHHHHHhcCCCCeEEEEECCcHhHHHHHHHHHHhcCCCCEEEEeceEEcCCCCcEeHHHHH---HHHHHHHhhhCCCEEE
Confidence 4677888 778887777552 113699999998 333334444222 2334445567899765
No 260
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.14 E-value=1.2e+02 Score=21.19 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHCCCeEEEE--C----CC-----CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHH-HHcCCcEEEEe
Q 028010 11 SFNEHIAALKRLGVKGVEI--R----KP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREF-VKMGKPVWGTC 78 (215)
Q Consensus 11 ~~~s~~~~l~~~G~~v~~~--~----~~-----~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~-~~~~~PilGIC 78 (215)
....+.+.+++.|.+.... + .. ..+.++|.||++=+.-+. .. ...+++. -+.++|+.-.=
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH--~~------~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSH--NA------MWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcCh--HH------HHHHHHHHHHcCCcEEEEC
Confidence 3446788999999998887 1 11 245678999987654321 01 1222233 33689977554
Q ss_pred -hHHHHHHHhh
Q 028010 79 -AGLIFLANKA 88 (215)
Q Consensus 79 -~G~QlLa~~~ 88 (215)
.|..-|..++
T Consensus 83 ~~~~~~l~~~l 93 (97)
T PF10087_consen 83 SRGVSSLERAL 93 (97)
T ss_pred CCCHHHHHHHH
Confidence 5666655554
No 261
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.97 E-value=1.2e+02 Score=24.58 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=27.8
Q ss_pred EEEEEec--CCChH-----HHHHHHHHCCCeEEEECC--CCC----------C--CCcCEEEEcCC
Q 028010 2 VVGVLAL--QGSFN-----EHIAALKRLGVKGVEIRK--PDQ----------L--QNVSSLIIPGG 46 (215)
Q Consensus 2 ~v~il~~--~G~~~-----s~~~~l~~~G~~v~~~~~--~~~----------l--~~~d~lil~GG 46 (215)
||+|+.- ...|. .+.+++++.|+++.+... ..+ + .++|++|+.+.
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 6787762 22222 345678889999888642 111 1 36899999754
No 262
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=41.77 E-value=74 Score=28.95 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=23.9
Q ss_pred HHHHHHHHCCCeEEEE---CCC-C--------CCCCcCEEEEcCCCc
Q 028010 14 EHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGES 48 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~---~~~-~--------~l~~~d~lil~GG~~ 48 (215)
.+...|++.|+++... .+. + .++++|.||++||.+
T Consensus 224 ~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S 270 (419)
T PRK14690 224 MLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS 270 (419)
T ss_pred HHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc
Confidence 3566799999987543 222 1 235799999999854
No 263
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=41.08 E-value=1.4e+02 Score=26.79 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=20.8
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEEC
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~ 30 (215)
||.|+-+.|.=.++.+.|.+.|++|...+
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD 29 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTD 29 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEe
Confidence 46677777766677888888888776554
No 264
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=40.94 E-value=1.6e+02 Score=26.88 Aligned_cols=71 Identities=23% Similarity=0.240 Sum_probs=39.8
Q ss_pred CEEEEEecCC--ChHHHHHHHHHCC--CeEEEECCC-----------------CCCCCcCEEEE-cCCCc-chHHHHHhh
Q 028010 1 MVVGVLALQG--SFNEHIAALKRLG--VKGVEIRKP-----------------DQLQNVSSLII-PGGES-TTMARLAEY 57 (215)
Q Consensus 1 m~v~il~~~G--~~~s~~~~l~~~G--~~v~~~~~~-----------------~~l~~~d~lil-~GG~~-~~~~~l~~~ 57 (215)
.||||+.-.. .+..+.+.+++.. +++.++... +...++|.||| -||-+ .....+.
T Consensus 130 ~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn-- 207 (432)
T TIGR00237 130 KRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFN-- 207 (432)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcC--
Confidence 3788888643 3556777777664 566555431 11234898877 34322 2222222
Q ss_pred CCHHHHHHHHHHcCCcEE
Q 028010 58 HNLFPALREFVKMGKPVW 75 (215)
Q Consensus 58 ~~l~~~i~~~~~~~~Pil 75 (215)
-....+...+..+||+
T Consensus 208 --~e~~~rai~~~~~Pvi 223 (432)
T TIGR00237 208 --DEKVARAIFLSKIPII 223 (432)
T ss_pred --cHHHHHHHHcCCCCEE
Confidence 2355666666789976
No 265
>PRK07308 flavodoxin; Validated
Probab=39.83 E-value=42 Score=25.21 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=26.3
Q ss_pred EEEEEec--CCChHH----HHHHHHHCCCeEEEECCC----CCCCCcCEEEE
Q 028010 2 VVGVLAL--QGSFNE----HIAALKRLGVKGVEIRKP----DQLQNVSSLII 43 (215)
Q Consensus 2 ~v~il~~--~G~~~s----~~~~l~~~G~~v~~~~~~----~~l~~~d~lil 43 (215)
+|.|+-. .|+=.. +.+.|+..|+++++.+.. .++.++|.|++
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~~l~~~d~vi~ 54 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASDFEDADIAIV 54 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHhHhccCCEEEE
Confidence 5666654 454333 345667788877665432 34678899888
No 266
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=39.42 E-value=1.8e+02 Score=22.54 Aligned_cols=69 Identities=19% Similarity=0.101 Sum_probs=43.1
Q ss_pred EEEEEecCCChH---HHHHHHHHCCCeEEEECCC--CCCCCcCEEEEcC--CCcchHHHHHhhCCHHHHHHHHHHcCCcE
Q 028010 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVKMGKPV 74 (215)
Q Consensus 2 ~v~il~~~G~~~---s~~~~l~~~G~~v~~~~~~--~~l~~~d~lil~G--G~~~~~~~l~~~~~l~~~i~~~~~~~~Pi 74 (215)
||-|+..+++.. .....|...|..+..+.+. ..+..-|.+|+-. |... ...+.++.+.+.|.|+
T Consensus 35 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~---------~~i~~~~~ak~~g~~i 105 (179)
T cd05005 35 RIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETS---------SVVNAAEKAKKAGAKV 105 (179)
T ss_pred eEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcH---------HHHHHHHHHHHCCCeE
Confidence 566777766544 2345677789888877543 2344567766644 3321 1245666677789999
Q ss_pred EEEeh
Q 028010 75 WGTCA 79 (215)
Q Consensus 75 lGIC~ 79 (215)
++|+-
T Consensus 106 I~IT~ 110 (179)
T cd05005 106 VLITS 110 (179)
T ss_pred EEEEC
Confidence 99985
No 267
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=39.24 E-value=2.2e+02 Score=24.55 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=24.2
Q ss_pred HHHHHHHHCCCeEEEEC--CCC-------C--CCCcCEEEEcCCCcc
Q 028010 14 EHIAALKRLGVKGVEIR--KPD-------Q--LQNVSSLIIPGGEST 49 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~--~~~-------~--l~~~d~lil~GG~~~ 49 (215)
.+.+.|++.|.++.... ... + .+++|.||..||-++
T Consensus 24 ~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGT 70 (301)
T COG1597 24 EVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGT 70 (301)
T ss_pred HHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcch
Confidence 56788999998865542 221 1 236899999888654
No 268
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=39.05 E-value=1.6e+02 Score=28.97 Aligned_cols=87 Identities=7% Similarity=-0.047 Sum_probs=50.8
Q ss_pred EEEEEecCCChHHH-HHHHHHCCCeEEEECCCC---------------------CCCCcCEEEEcCCCcch---HHHHHh
Q 028010 2 VVGVLALQGSFNEH-IAALKRLGVKGVEIRKPD---------------------QLQNVSSLIIPGGESTT---MARLAE 56 (215)
Q Consensus 2 ~v~il~~~G~~~s~-~~~l~~~G~~v~~~~~~~---------------------~l~~~d~lil~GG~~~~---~~~l~~ 56 (215)
+|.|+-+.|.=.+. ++.|.+.|++|...+... .+.++|.||++-|.+.. .....+
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~~ 85 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAKS 85 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHHH
Confidence 58888888877776 889999999988766311 13457888886663321 111111
Q ss_pred h----CCHHHHHHHHHHcCCcEEEEehH------HHHHHHhhc
Q 028010 57 Y----HNLFPALREFVKMGKPVWGTCAG------LIFLANKAV 89 (215)
Q Consensus 57 ~----~~l~~~i~~~~~~~~PilGIC~G------~QlLa~~~~ 89 (215)
. .+-.+++.+.. .++|++||..- -.|+++.+.
T Consensus 86 ~gi~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~li~~iL~ 127 (809)
T PRK14573 86 RGNRLVHRAELLAELM-QEQISILVSGSHGKTTVSSLITAIFQ 127 (809)
T ss_pred CCCcEEeHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 0 11234444433 34588888753 345555553
No 269
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=38.80 E-value=17 Score=28.87 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=25.9
Q ss_pred CcCEEEEcC-CCcchHHHHHhhCCHH-HHHHHHHHcCCcEEEEehHHHHHH
Q 028010 37 NVSSLIIPG-GESTTMARLAEYHNLF-PALREFVKMGKPVWGTCAGLIFLA 85 (215)
Q Consensus 37 ~~d~lil~G-G~~~~~~~l~~~~~l~-~~i~~~~~~~~PilGIC~G~QlLa 85 (215)
+.|.+|+|| +++..-.++-.-.+.. ..|.++-..+.+.+|+|+-.|++-
T Consensus 109 ~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~~~~~~igla~~~Q~~~ 159 (182)
T PRK10333 109 RLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQPVGYAHDCQLVE 159 (182)
T ss_pred cCCEEEeCceEECCCCCcccCCcchHHHHHHHhcccCCcEEEEeeeeEEeC
Confidence 469999999 5542111111112222 233322112345899999999874
No 270
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.71 E-value=1.1e+02 Score=28.10 Aligned_cols=29 Identities=24% Similarity=-0.006 Sum_probs=24.7
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEEC
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~ 30 (215)
||.|+-+.+.=.++.+.|.+.|++|...+
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D 37 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVAD 37 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEc
Confidence 78999988877788999999999887765
No 271
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=38.01 E-value=69 Score=27.09 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCCeEEEECCCCCC------CCcCEEEEc
Q 028010 13 NEHIAALKRLGVKGVEIRKPDQL------QNVSSLIIP 44 (215)
Q Consensus 13 ~s~~~~l~~~G~~v~~~~~~~~l------~~~d~lil~ 44 (215)
..+.++|+++|+++..+...+++ .++|.++..
T Consensus 26 ~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 63 (304)
T PRK01372 26 AAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNA 63 (304)
T ss_pred HHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEe
Confidence 35789999999999888644322 357888764
No 272
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=38.00 E-value=64 Score=26.02 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=33.6
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEEC------CC--------CCCCCcCEEEEcCCC
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR------KP--------DQLQNVSSLIIPGGE 47 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~------~~--------~~l~~~d~lil~GG~ 47 (215)
|||.|..-...-..+.+.|++.|+++..+. .+ ..+..+|.||++...
T Consensus 2 ~~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~ 62 (249)
T PRK05928 2 MKILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKN 62 (249)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHH
Confidence 577777776666678899999999875532 11 234679999998643
No 273
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=37.97 E-value=1.1e+02 Score=26.04 Aligned_cols=42 Identities=26% Similarity=0.341 Sum_probs=28.9
Q ss_pred CEEEEEecCC-------ChH---HHHHHHHHCCCeEEEECCCC-------CCCCcCEEEE
Q 028010 1 MVVGVLALQG-------SFN---EHIAALKRLGVKGVEIRKPD-------QLQNVSSLII 43 (215)
Q Consensus 1 m~v~il~~~G-------~~~---s~~~~l~~~G~~v~~~~~~~-------~l~~~d~lil 43 (215)
|||+||- .| ++. .+.++|++.|+++..+.... .+.++|.++.
T Consensus 1 ~~v~v~~-gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~ 59 (299)
T PRK14571 1 MRVALLM-GGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFN 59 (299)
T ss_pred CeEEEEe-CCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEE
Confidence 8888875 22 222 46789999999998886443 2346787765
No 274
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=37.95 E-value=60 Score=24.38 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=18.6
Q ss_pred HHHHHHCCCeEEEEC---CCCCCCCcCEEEEcCC
Q 028010 16 IAALKRLGVKGVEIR---KPDQLQNVSSLIIPGG 46 (215)
Q Consensus 16 ~~~l~~~G~~v~~~~---~~~~l~~~d~lil~GG 46 (215)
.+.|...+..+.+.. ...++.++|.||+.++
T Consensus 19 a~~l~~~~~~v~~~~~~~~~~~~~~yD~vi~gsp 52 (143)
T PF12724_consen 19 AEKLGEEGELVDLEKVEEDEPDLSDYDAVIFGSP 52 (143)
T ss_pred HHHHhhhccEEEHHhhhhcccccccCCEEEEEEE
Confidence 344444444444333 2356789999999885
No 275
>PRK10342 glycerate kinase I; Provisional
Probab=37.34 E-value=41 Score=30.27 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=26.5
Q ss_pred CCCCCcCEEEEcC-CCc---chHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 33 DQLQNVSSLIIPG-GES---TTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 33 ~~l~~~d~lil~G-G~~---~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
+.+.++| |||+| |.- +.+.+.+ ....+.+.+.++|++.||.-.
T Consensus 280 ~~l~~AD-LVITGEG~~D~QTl~GK~p-----~gVa~~A~~~~vPviai~G~~ 326 (381)
T PRK10342 280 EHIHDCT-LVITGEGRIDSQSIHGKVP-----IGVANVAKKYHKPVIGIAGSL 326 (381)
T ss_pred HHhccCC-EEEECCCcCcccccCCccH-----HHHHHHHHHhCCCEEEEeccc
Confidence 3456788 67777 742 2333332 234444555799999999764
No 276
>PRK13055 putative lipid kinase; Reviewed
Probab=36.91 E-value=2.4e+02 Score=24.48 Aligned_cols=48 Identities=15% Similarity=0.283 Sum_probs=30.1
Q ss_pred EEEEEecCC--C------hHHHHHHHHHCCCeEEEE--C-CCCC---------CCCcCEEEEcCCCcc
Q 028010 2 VVGVLALQG--S------FNEHIAALKRLGVKGVEI--R-KPDQ---------LQNVSSLIIPGGEST 49 (215)
Q Consensus 2 ~v~il~~~G--~------~~s~~~~l~~~G~~v~~~--~-~~~~---------l~~~d~lil~GG~~~ 49 (215)
|+.|+..+. + +..+.+.|++.|+++.+. . .+.+ ..++|.||+.||-++
T Consensus 4 r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGT 71 (334)
T PRK13055 4 RARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGT 71 (334)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCH
Confidence 778877633 2 224567888999886653 2 2111 135789999998654
No 277
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=36.76 E-value=46 Score=29.90 Aligned_cols=43 Identities=23% Similarity=0.450 Sum_probs=26.2
Q ss_pred CCCCCcCEEEEcC-CCc---chHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 33 DQLQNVSSLIIPG-GES---TTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 33 ~~l~~~d~lil~G-G~~---~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
+.+.++| |||+| |.- +.+.+.. ....+.+.+.++|++.||.-.
T Consensus 279 ~~l~~AD-lVITGEG~~D~Qtl~GK~p-----~~Va~~A~~~~vPviai~G~v 325 (375)
T TIGR00045 279 QKIKDAD-LVITGEGRLDRQSLMGKAP-----VGVAKRAKKYGVPVIAIAGSL 325 (375)
T ss_pred HHhcCCC-EEEECCCcccccccCCchH-----HHHHHHHHHhCCeEEEEeccc
Confidence 4467788 56666 742 3333433 233444555799999999754
No 278
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=36.73 E-value=94 Score=27.85 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=24.0
Q ss_pred HHHHHHHHCCCeEEEEC---CC-C--------CCCCcCEEEEcCCCc
Q 028010 14 EHIAALKRLGVKGVEIR---KP-D--------QLQNVSSLIIPGGES 48 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~---~~-~--------~l~~~d~lil~GG~~ 48 (215)
.+...|++.|+++.... +. + .++++|.||.+||.+
T Consensus 199 ~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s 245 (394)
T cd00887 199 MLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVS 245 (394)
T ss_pred HHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 35667899999876543 21 1 124699999999865
No 279
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=36.64 E-value=47 Score=24.60 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=21.5
Q ss_pred CCcCEEEEcCCCcc-hHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHH
Q 028010 36 QNVSSLIIPGGEST-TMARLAEYHNLFPALREFVKMGKPVWGTCAGLI 82 (215)
Q Consensus 36 ~~~d~lil~GG~~~-~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~Q 82 (215)
...+.+|+.-|..+ ...++.+ .|..+++.++|++||.+.-+
T Consensus 69 ~~s~~~IVLig~~T~~s~wV~~------EI~~A~~~~~~Ii~V~~~~~ 110 (130)
T PF08937_consen 69 KNSSVTIVLIGPNTAKSKWVNW------EIEYALKKGKPIIGVYLPGL 110 (130)
T ss_dssp HTEEEEEEE--TT----HHHHH------HHHHHTTT---EEEEETT--
T ss_pred hcCCEEEEEeCCCcccCcHHHH------HHHHHHHCCCCEEEEECCCC
Confidence 45777777666543 3445544 46677778999999987643
No 280
>COG3395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.30 E-value=2e+02 Score=26.28 Aligned_cols=44 Identities=27% Similarity=0.460 Sum_probs=31.7
Q ss_pred CEEEEEe--cCCChHHHHHHHHHCCCeEEEECC-C--CCCCCcCEEEEcC
Q 028010 1 MVVGVLA--LQGSFNEHIAALKRLGVKGVEIRK-P--DQLQNVSSLIIPG 45 (215)
Q Consensus 1 m~v~il~--~~G~~~s~~~~l~~~G~~v~~~~~-~--~~l~~~d~lil~G 45 (215)
||++|++ +.|+.. +...|...|.+...+.. + ...+++|.+++.+
T Consensus 1 ~~l~viADD~TGatd-vas~l~~~G~~t~~~~~v~~~~~~~~~davvi~~ 49 (413)
T COG3395 1 MKLGVIADDLTGATD-VASFLVKNGLRTVLVLDVPTVRLFDEVDAVVIAL 49 (413)
T ss_pred CceEEeecccccchH-HHHHHHhcCCceeeeecCCcccccccCCEEEEec
Confidence 7888887 566544 66789999997665532 2 2246899999988
No 281
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=35.35 E-value=2.1e+02 Score=22.60 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=33.2
Q ss_pred HHHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+.++++++|+++.+.....+ + .++|++++.+..+.... ++.+.+.++|+..+
T Consensus 20 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-----------~~~~~~~~ipvv~~ 84 (264)
T cd06267 20 GIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL-----------LEELAALGIPVVLV 84 (264)
T ss_pred HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH-----------HHHHHHcCCCEEEe
Confidence 456677788999887754321 1 36899999876543211 33444567887665
No 282
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=35.22 E-value=2.3e+02 Score=22.63 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=36.5
Q ss_pred HHHHHHHCCCeEEEE-CCCCC------------CCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010 15 HIAALKRLGVKGVEI-RKPDQ------------LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~-~~~~~------------l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G 80 (215)
+.++++++|+++.++ ....+ -.++|+||+....++.. .+.++++.++|+|+..+=..
T Consensus 20 ~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~---------~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 20 AKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSL---------APFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTT---------HHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHH---------HHHHHHHhhcCceEEEEecc
Confidence 567788899998885 43211 14799999876433221 24455666689998886433
No 283
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=35.15 E-value=25 Score=27.77 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=26.7
Q ss_pred CcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHHH
Q 028010 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN 86 (215)
Q Consensus 37 ~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa~ 86 (215)
+.|.+|+|| +++..-.++-.-.+..+...+......+.+|+|+-.|++..
T Consensus 115 ~idlvivP~lafD~~G~RLG~GgGyYDR~L~~~~~~~~~igv~~~~q~~~~ 165 (181)
T TIGR02727 115 EIDLIIVPGVAFDRRGYRLGYGGGYYDRFLANLKGKTVVVGLAFDFQLVDE 165 (181)
T ss_pred cCCEEEeCceEEcCCCccccCCcchHHHHHHhcccCCCEEEEEecceeeCc
Confidence 469999999 65422112221122222222222233458999999888654
No 284
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=34.91 E-value=33 Score=29.89 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=23.7
Q ss_pred CCCcCEEEEcCC-C-cchHHHHHhhCCHHHHHHHHHH-cCCcEEEEe
Q 028010 35 LQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVK-MGKPVWGTC 78 (215)
Q Consensus 35 l~~~d~lil~GG-~-~~~~~~l~~~~~l~~~i~~~~~-~~~PilGIC 78 (215)
+.++|.|||.-| . .+..+.|. ..-|+++++ .+-|+.+||
T Consensus 181 I~~AD~IVlGPgsp~TSI~P~Ll-----VpgI~eAL~~s~A~vV~Vs 222 (303)
T cd07186 181 IEDADLVIIGPSNPVTSIGPILA-----LPGIREALRDKKAPVVAVS 222 (303)
T ss_pred HHhCCEEEECCCccHHHhhhhcc-----chhHHHHHHhCCCCEEEEc
Confidence 457899888444 3 34555553 233444443 466999999
No 285
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=34.44 E-value=30 Score=26.53 Aligned_cols=74 Identities=20% Similarity=0.199 Sum_probs=43.6
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEECCCC-----------------CCCCcCEEEEcCCC--cchHHHHHhhCCHHH
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD-----------------QLQNVSSLIIPGGE--STTMARLAEYHNLFP 62 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~~-----------------~l~~~d~lil~GG~--~~~~~~l~~~~~l~~ 62 (215)
||+++ |.+..+.+.|+..+.++.+++... -++++|.++++|+. .... .+
T Consensus 13 ~V~~V---G~f~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti---------~~ 80 (147)
T PF04016_consen 13 KVGMV---GYFQPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTLVNGTI---------DD 80 (147)
T ss_dssp EEEEE---S--HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHCCTTTH---------HH
T ss_pred EEEEE---cCcHHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeeeecCCH---------HH
Confidence 56666 445567788888899998875321 14679999999962 2222 22
Q ss_pred HHHHHHHcCCcEEEEehHHHHHHHhh
Q 028010 63 ALREFVKMGKPVWGTCAGLIFLANKA 88 (215)
Q Consensus 63 ~i~~~~~~~~PilGIC~G~QlLa~~~ 88 (215)
.| +..+.++++.=+.-..++....+
T Consensus 81 iL-~~~~~~~~vil~GpS~~~~P~~l 105 (147)
T PF04016_consen 81 IL-ELARNAREVILYGPSAPLHPEAL 105 (147)
T ss_dssp HH-HHTTTSSEEEEESCCGGS-GGGG
T ss_pred HH-HhCccCCeEEEEecCchhhHHHH
Confidence 23 33334667666666666666555
No 286
>PF01606 Arteri_env: Arterivirus envelope protein; InterPro: IPR002556 This family consists of viral envelope proteins from the Arteriviridae; this includes Porcine reproductive and respiratory syndrome virus (PRRSV) envelope protein GP3 and Lactate dehydrogenase-elevating virus (LDV) structural glycoprotein. Arteriviruses consists of positive ssRNA and do not have a DNA stage.
Probab=34.28 E-value=7.5 Score=30.93 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=10.2
Q ss_pred CEEEEeeCCccC
Q 028010 195 NLLGTAFHPELT 206 (215)
Q Consensus 195 ~v~g~QFHPE~s 206 (215)
-.|+.|||||+-
T Consensus 118 fsyaaqfhPEiF 129 (214)
T PF01606_consen 118 FSYAAQFHPEIF 129 (214)
T ss_pred HHHHHhhChhhh
Confidence 468899999986
No 287
>PRK11914 diacylglycerol kinase; Reviewed
Probab=34.25 E-value=2.5e+02 Score=23.81 Aligned_cols=50 Identities=28% Similarity=0.321 Sum_probs=31.8
Q ss_pred CEEEEEecCC--C------hHHHHHHHHHCCCeEEEEC--CCC-------C--CCCcCEEEEcCCCcch
Q 028010 1 MVVGVLALQG--S------FNEHIAALKRLGVKGVEIR--KPD-------Q--LQNVSSLIIPGGESTT 50 (215)
Q Consensus 1 m~v~il~~~G--~------~~s~~~~l~~~G~~v~~~~--~~~-------~--l~~~d~lil~GG~~~~ 50 (215)
||+.++..+. . ...+.+.|++.|+++.++. ... + ..++|.||+.||-++.
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi 77 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVI 77 (306)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 3777777632 2 2256778999998876543 211 1 1457999999986654
No 288
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.03 E-value=1.8e+02 Score=20.83 Aligned_cols=62 Identities=16% Similarity=0.311 Sum_probs=36.1
Q ss_pred EEEEEecCCChHH-----HHHHHHHCCCeEEEECCC---CCC------CCcCEEEEcCCCcchHHHHHhhCCHHHHHHH
Q 028010 2 VVGVLALQGSFNE-----HIAALKRLGVKGVEIRKP---DQL------QNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (215)
Q Consensus 2 ~v~il~~~G~~~s-----~~~~l~~~G~~v~~~~~~---~~l------~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~ 66 (215)
||.+....|+.+. +...|+..|+++...... +++ .++|.|.++........... .+.+.+++
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~---~~i~~l~~ 76 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMK---EVIEELKE 76 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHH---HHHHHHHH
Confidence 3444555565553 467889999999775432 121 36899999876443333332 23455554
No 289
>PRK09932 glycerate kinase II; Provisional
Probab=33.76 E-value=53 Score=29.58 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=26.0
Q ss_pred CCCCCcCEEEEcC-CCc---chHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 33 DQLQNVSSLIIPG-GES---TTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 33 ~~l~~~d~lil~G-G~~---~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
+.+.++| |||+| |.- +.+.+.+ ....+.+.+.++|++.||...
T Consensus 280 ~~l~~AD-lVITGEG~~D~Qt~~GK~p-----~~Va~~A~~~~~Pvi~i~G~~ 326 (381)
T PRK09932 280 QAVQGAA-LVITGEGRIDSQTAGGKAP-----LGVASVAKQFNVPVIGIAGVL 326 (381)
T ss_pred HHhccCC-EEEECCCcccccccCCccH-----HHHHHHHHHcCCCEEEEeccc
Confidence 4567788 56666 742 2333332 233444455799999999764
No 290
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=33.29 E-value=1.7e+02 Score=25.55 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=27.3
Q ss_pred CcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE--ehHH
Q 028010 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGT--CAGL 81 (215)
Q Consensus 37 ~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI--C~G~ 81 (215)
.+++|||-| |.+..-. .+.+.|+++.++|+|+.-+ |..-
T Consensus 233 g~~GiVl~~~G~Gn~p~------~~~~~l~~a~~~gi~VV~~Sq~~~G 274 (323)
T cd00411 233 GYKGIVLAGYGAGNVPT------DLIDELEEAAERGVVVVNSTQCEEG 274 (323)
T ss_pred CCCEEEEEeECCCCCCH------HHHHHHHHHHHCCCEEEEecCCCCC
Confidence 579999987 6543322 2367788888899999877 6443
No 291
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=33.28 E-value=3.1e+02 Score=23.49 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=39.3
Q ss_pred EEEEEec--CCChH-----HHHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCCCcchHHHHHhhCCHHH
Q 028010 2 VVGVLAL--QGSFN-----EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (215)
Q Consensus 2 ~v~il~~--~G~~~-----s~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG~~~~~~~l~~~~~l~~ 62 (215)
+|+++.- ...|. .+.+++++.|+++.+.....+ + .++|++|+.+...... .+
T Consensus 27 ~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~---------~~ 97 (330)
T PRK10355 27 KIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVL---------SN 97 (330)
T ss_pred eEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhH---------HH
Confidence 5666663 33333 356778889999888754211 1 3799999976422111 13
Q ss_pred HHHHHHHcCCcEEEE
Q 028010 63 ALREFVKMGKPVWGT 77 (215)
Q Consensus 63 ~i~~~~~~~~PilGI 77 (215)
.++.+.+++.|++-+
T Consensus 98 ~l~~~~~~~iPvV~i 112 (330)
T PRK10355 98 VIKEAKQEGIKVLAY 112 (330)
T ss_pred HHHHHHHCCCeEEEE
Confidence 344445567887655
No 292
>PRK07116 flavodoxin; Provisional
Probab=33.22 E-value=2e+02 Score=21.91 Aligned_cols=26 Identities=15% Similarity=0.024 Sum_probs=15.6
Q ss_pred CEEEEEecC--CChHHHHHHHH-HCCCeE
Q 028010 1 MVVGVLALQ--GSFNEHIAALK-RLGVKG 26 (215)
Q Consensus 1 m~v~il~~~--G~~~s~~~~l~-~~G~~v 26 (215)
||+.|+-|. |+=..+++.+. .++.++
T Consensus 3 ~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~ 31 (160)
T PRK07116 3 NKTLVAYFSATGTTKKVAEKLAEVTGADL 31 (160)
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhcCCe
Confidence 688888874 45445555544 456554
No 293
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.20 E-value=2.8e+02 Score=22.87 Aligned_cols=67 Identities=10% Similarity=0.096 Sum_probs=36.2
Q ss_pred EEEEEecC--CChH-----HHHHHHHHCCCeEEEE-CCCC----------CC--CCcCEEEEcCCCcchHHHHHhhCCHH
Q 028010 2 VVGVLALQ--GSFN-----EHIAALKRLGVKGVEI-RKPD----------QL--QNVSSLIIPGGESTTMARLAEYHNLF 61 (215)
Q Consensus 2 ~v~il~~~--G~~~-----s~~~~l~~~G~~v~~~-~~~~----------~l--~~~d~lil~GG~~~~~~~l~~~~~l~ 61 (215)
||+++.-. ..+. .+.+++++.|+++.++ .... .+ .+.|++|+.+...... .
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~---------~ 71 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDPVST---------A 71 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhh---------h
Confidence 57776632 2222 2456788899998754 2211 11 3689999965322111 1
Q ss_pred HHHHHHHHcCCcEEEE
Q 028010 62 PALREFVKMGKPVWGT 77 (215)
Q Consensus 62 ~~i~~~~~~~~PilGI 77 (215)
+.++...+.++|+..+
T Consensus 72 ~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 72 AAYKKVAEAGIKLVFM 87 (294)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 3344444567886543
No 294
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=32.93 E-value=2e+02 Score=26.55 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=47.4
Q ss_pred EEEEEecCCC-----hHHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcCCCc--chH-----HHHHhhCCHHHHHHHHHH
Q 028010 2 VVGVLALQGS-----FNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTM-----ARLAEYHNLFPALREFVK 69 (215)
Q Consensus 2 ~v~il~~~G~-----~~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~GG~~--~~~-----~~l~~~~~l~~~i~~~~~ 69 (215)
+|+|++|.+. +....+.|++.|+++++.+.. +|.--|+.+.-||.. ..+ ..+....+..+.+.++.+
T Consensus 187 ~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d~~-~L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~ 265 (445)
T PF14403_consen 187 NIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICDPR-DLEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYR 265 (445)
T ss_pred cEEEEecccCCccchHHHHHHHHHHcCCceEecChH-HceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHh
Confidence 6999999773 345678899999999887653 344345555556643 122 122222333444445555
Q ss_pred cCCcEEEEehHHHHHHH
Q 028010 70 MGKPVWGTCAGLIFLAN 86 (215)
Q Consensus 70 ~~~PilGIC~G~QlLa~ 86 (215)
.+.-.+---+-.|++.+
T Consensus 266 ~~av~~vgsfrs~l~hn 282 (445)
T PF14403_consen 266 DGAVCMVGSFRSQLLHN 282 (445)
T ss_pred cCCeEEecchhhhhhhh
Confidence 55433333455666654
No 295
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.93 E-value=2.5e+02 Score=22.64 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=33.1
Q ss_pred HHHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+.+++++.|+++.+.....+ + .+.|++|+.+....... ...+.++.+.+.++|+.-+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~------~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 20 AIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTH------ADHSHYERLAERGLPVVLV 89 (273)
T ss_pred HHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCccc------chhHHHHHHHhCCCCEEEE
Confidence 456778889999877543211 1 36899999764221110 1123444555578887655
No 296
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.91 E-value=2.6e+02 Score=25.07 Aligned_cols=29 Identities=17% Similarity=0.020 Sum_probs=24.6
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEEC
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~ 30 (215)
||.|+-+.+.=.+..+.|++.|++|...+
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~G~~v~~~D 36 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLARGVTPRVID 36 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCeEEEEc
Confidence 68899998887888889999999887765
No 297
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=32.50 E-value=2.5e+02 Score=25.40 Aligned_cols=71 Identities=21% Similarity=0.255 Sum_probs=38.5
Q ss_pred EEEEEecCC--ChHHHHHHHHHCC--CeEEEECCC--------------CCCC--CcCEEEE-cCCCcchHHHHHhhCCH
Q 028010 2 VVGVLALQG--SFNEHIAALKRLG--VKGVEIRKP--------------DQLQ--NVSSLII-PGGESTTMARLAEYHNL 60 (215)
Q Consensus 2 ~v~il~~~G--~~~s~~~~l~~~G--~~v~~~~~~--------------~~l~--~~d~lil-~GG~~~~~~~l~~~~~l 60 (215)
||||+.-.. .+..+.+-++++. +++.++... ..++ .+|.||| -||-+ .++|.. .+-
T Consensus 137 ~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS--~eDL~~-Fn~ 213 (438)
T PRK00286 137 RIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS--LEDLWA-FND 213 (438)
T ss_pred EEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC--HHHhhc-cCc
Confidence 788887533 3446666666653 566655432 0122 2798777 34322 122322 122
Q ss_pred HHHHHHHHHcCCcEE
Q 028010 61 FPALREFVKMGKPVW 75 (215)
Q Consensus 61 ~~~i~~~~~~~~Pil 75 (215)
.+..+...+..+||+
T Consensus 214 e~v~~ai~~~~~Pvi 228 (438)
T PRK00286 214 EAVARAIAASRIPVI 228 (438)
T ss_pred HHHHHHHHcCCCCEE
Confidence 455666667789976
No 298
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=32.26 E-value=50 Score=26.72 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=23.3
Q ss_pred CEEEEEecCCC----hHHHHHHHHHCCCeEEEECC
Q 028010 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRK 31 (215)
Q Consensus 1 m~v~il~~~G~----~~s~~~~l~~~G~~v~~~~~ 31 (215)
|||.|-+-+|- ...+.++|++.|.+|.++.+
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g~~V~VvAP 35 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALGHDVVVVAP 35 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTSSEEEEEEE
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcCCeEEEEeC
Confidence 89999998883 44678889888899988754
No 299
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.23 E-value=2e+02 Score=20.92 Aligned_cols=53 Identities=11% Similarity=0.064 Sum_probs=33.7
Q ss_pred EEEEEecCCChHH-----HHHHHHHCCCeEEEECCC---CCC------CCcCEEEEcCCCcchHHHH
Q 028010 2 VVGVLALQGSFNE-----HIAALKRLGVKGVEIRKP---DQL------QNVSSLIIPGGESTTMARL 54 (215)
Q Consensus 2 ~v~il~~~G~~~s-----~~~~l~~~G~~v~~~~~~---~~l------~~~d~lil~GG~~~~~~~l 54 (215)
||.+....|+.+. ....|+..|+++...... +++ .++|.|++++........+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~ 67 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLF 67 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHH
Confidence 4555556676664 345788899999887542 221 3789999988654443343
No 300
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=32.21 E-value=33 Score=29.85 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=24.6
Q ss_pred CCCcCEEEEcCC-C-cchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010 35 LQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (215)
Q Consensus 35 l~~~d~lil~GG-~-~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC 78 (215)
+.++|.|||.-| + .+..+.|. ..-|++++ .+.|+.+||
T Consensus 183 I~~AD~IiiGPgnp~TSI~P~L~-----v~gi~eAL-~~a~vV~Vs 222 (303)
T PRK13606 183 IEEADAVIIGPSNPVTSIGPILA-----VPGIREAL-TEAPVVAVS 222 (303)
T ss_pred HHhCCEEEECCCccHHhhchhcc-----chhHHHHH-hCCCEEEEc
Confidence 356898888544 3 34444442 34566666 689999988
No 301
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=32.02 E-value=2.6e+02 Score=22.24 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=22.3
Q ss_pred HHHHHHHHCCCeEEEECCCC----------CC--CCcCEEEEcCC
Q 028010 14 EHIAALKRLGVKGVEIRKPD----------QL--QNVSSLIIPGG 46 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~----------~l--~~~d~lil~GG 46 (215)
.+.+++++.|+++.+..... .+ .+.|++|+..+
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (266)
T cd06282 20 GIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVA 64 (266)
T ss_pred HHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 35677888999988764321 11 36899998654
No 302
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=31.69 E-value=2.4e+02 Score=22.52 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=22.8
Q ss_pred HHHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCC
Q 028010 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG 46 (215)
.+.+++++.|+++.+.....+ + ..+|++|+.+.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 20 AIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 456778889999887753211 1 36899999764
No 303
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=31.66 E-value=1.9e+02 Score=26.29 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=25.7
Q ss_pred CcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 37 ~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+++|||-| |.+..-. .+.+.|+++.++|+||.-.
T Consensus 299 g~~GiVleg~G~G~vp~------~~~~~l~~a~~~GipVV~t 334 (404)
T TIGR02153 299 GYKGIVIEGTGLGHVSE------DWIPSIKRATDDGVPVVMT 334 (404)
T ss_pred CCCEEEEeeECCCCCCH------HHHHHHHHHHHCCCEEEEe
Confidence 489999988 6543322 2467888888999998876
No 304
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=31.50 E-value=1.9e+02 Score=25.64 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=24.7
Q ss_pred CcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 37 ~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+++|||-| |.+..-. .+.+.|+++.++|+||.-.
T Consensus 262 g~~GlVl~g~G~Gn~p~------~~~~al~~a~~~GipVV~~ 297 (349)
T TIGR00520 262 GAKGIVLAGVGNGSLSA------AGLKVNETAAKLGVPIVRS 297 (349)
T ss_pred CCCEEEEEeECCCCCCH------HHHHHHHHHHHCCCEEEEE
Confidence 479999977 5443222 2357788888899998865
No 305
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.32 E-value=75 Score=27.23 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=32.1
Q ss_pred CEEEEEecCCChH-HHHHHHHHCCCeEEEECCC--CC----CCCcCEEEEcC
Q 028010 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIRKP--DQ----LQNVSSLIIPG 45 (215)
Q Consensus 1 m~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~--~~----l~~~d~lil~G 45 (215)
|||+|+-. |+.. .+...|.+.|.+|.+++.. .+ +.++|.|++.=
T Consensus 5 m~I~iiG~-G~~G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~v 55 (308)
T PRK14619 5 KTIAILGA-GAWGSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAV 55 (308)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEEC
Confidence 79999976 6665 4678899999999887532 12 35789888753
No 306
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=31.30 E-value=2.4e+02 Score=25.47 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=45.9
Q ss_pred EEEEEecCCChH-----HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHHHcCCcEE
Q 028010 2 VVGVLALQGSFN-----EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVW 75 (215)
Q Consensus 2 ~v~il~~~G~~~-----s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~~~~~Pil 75 (215)
||.|..|..... .+...|++.|++.+ ++.+++|.+||-. +.....+. ...+.++++.+.+++|.
T Consensus 1 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~-----~~~~~aD~viinTC~v~~~a~~-----~~~~~i~~~~~~~~~vv 70 (430)
T TIGR01125 1 KIGFISLGCPKNLVDSEVMLGILREAGYEVT-----PNYEDADYVIVNTCGFIEDARQ-----ESIDTIGELADAGKKVI 70 (430)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCcCEEC-----CCcccCCEEEEeCCCccchHHH-----HHHHHHHHHHhcCCCEE
Confidence 456666654221 35678889998755 2344689999976 54322111 12455666666677755
Q ss_pred EEehHHHHHHHhh
Q 028010 76 GTCAGLIFLANKA 88 (215)
Q Consensus 76 GIC~G~QlLa~~~ 88 (215)
-..-.+|+..+.+
T Consensus 71 vgGc~a~~~pee~ 83 (430)
T TIGR01125 71 VTGCLVQRYKEEL 83 (430)
T ss_pred EECCccccchHHH
Confidence 5555677766654
No 307
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=31.25 E-value=1.4e+02 Score=26.62 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=25.6
Q ss_pred CCcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 36 QNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 36 ~~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
..+++||+-| |.+..- ..+.+.|+++.++|+|+.=.
T Consensus 253 ~g~~GiVie~~G~G~~~------~~~~~~i~~~~~~gi~VV~s 289 (351)
T COG0252 253 SGAKGLVLEGTGSGNVT------PALIESIERASKRGIPVVYS 289 (351)
T ss_pred cCCCEEEEEEECCCCCC------hHHHHHHHHHHHCCCeEEEE
Confidence 4689999977 554322 23467889999999998644
No 308
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=31.01 E-value=2.7e+02 Score=22.34 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=22.4
Q ss_pred HHHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCC
Q 028010 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG 46 (215)
.+.+++++.|+.+.+.....+ + .+.|++|+.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 20 AFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred HHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 356778889999887654211 1 25899998764
No 309
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=30.99 E-value=27 Score=29.79 Aligned_cols=70 Identities=26% Similarity=0.322 Sum_probs=43.3
Q ss_pred EEEEEecCCC------hHHHHHHHHHC-CCeEEEECC-------------------------------CC--CCCCcCEE
Q 028010 2 VVGVLALQGS------FNEHIAALKRL-GVKGVEIRK-------------------------------PD--QLQNVSSL 41 (215)
Q Consensus 2 ~v~il~~~G~------~~s~~~~l~~~-G~~v~~~~~-------------------------------~~--~l~~~d~l 41 (215)
||+|+..... ...+.+.|++. +..+..-.. .. ...++|.+
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i 80 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLI 80 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEE
Confidence 7899988773 22567888888 665544210 00 12579999
Q ss_pred EEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 42 IIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 42 il~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
|.-||-++.. ...+.+...++|++||=.|.
T Consensus 81 i~lGGDGT~L----------~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 81 IVLGGDGTFL----------RAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp EEEESHHHHH----------HHHHHCTTST-EEEEEESSS
T ss_pred EEECCCHHHH----------HHHHHhccCCCcEEeecCCC
Confidence 9999966542 22333333589999998874
No 310
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=30.97 E-value=1.1e+02 Score=27.64 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=23.3
Q ss_pred HHHHHHHCCCeEEEE---CCC-C--------CCCCcCEEEEcCCCc
Q 028010 15 HIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGES 48 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~---~~~-~--------~l~~~d~lil~GG~~ 48 (215)
+...|++.|+++... .+. + ...++|.||.+||.+
T Consensus 209 l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S 254 (411)
T PRK10680 209 VHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence 556789999986543 332 1 135799999999854
No 311
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=30.61 E-value=1.9e+02 Score=26.33 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=25.6
Q ss_pred CcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 37 ~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+++|||-| |.+..-. .+.+.|+++.++|+|+.-.
T Consensus 312 g~~GiVleg~G~Gnvp~------~~~~~l~~a~~~Gi~VV~t 347 (419)
T PRK04183 312 GYKGIVIEGTGLGHVST------DLIPSIKRATDDGIPVVMT 347 (419)
T ss_pred CCCEEEEEeECCCCCCH------HHHHHHHHHHHCCCEEEEe
Confidence 589999988 6543322 2467888888999998776
No 312
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=30.61 E-value=3e+02 Score=22.67 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=33.2
Q ss_pred HHHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+.+++++.|+++.+.....+ + .+.|++|+.+...+.. .+.+++..+.++|+..+
T Consensus 20 gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~---------~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 20 NFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEAL---------ASAVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhH---------HHHHHHHHHCCCCEEEE
Confidence 356778889999888754311 1 3689999876432211 12334444568887655
No 313
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=30.49 E-value=1.4e+02 Score=23.84 Aligned_cols=78 Identities=24% Similarity=0.135 Sum_probs=38.9
Q ss_pred CEEEEEec---CCChH-----HHHHHHHHCCCeEEEECCC---------------------CCCCCcCEEEEcCC-Ccch
Q 028010 1 MVVGVLAL---QGSFN-----EHIAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIPGG-ESTT 50 (215)
Q Consensus 1 m~v~il~~---~G~~~-----s~~~~l~~~G~~v~~~~~~---------------------~~l~~~d~lil~GG-~~~~ 50 (215)
|||.++.= .+.+. .+.+.+++.|++++.++.. +.+.++|+||+.-- +...
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s 80 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKAS 80 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCC
Confidence 78777752 22222 2345667789988776421 01346799888541 1111
Q ss_pred HHHHHhhCCHHHHHHHHHHcCCcEEEEehH
Q 028010 51 MARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (215)
Q Consensus 51 ~~~l~~~~~l~~~i~~~~~~~~PilGIC~G 80 (215)
++-+- +.+.+++....=.+||++-+|.|
T Consensus 81 ~pg~L--Kn~iD~l~~~~l~~K~v~iiat~ 108 (191)
T PRK10569 81 FSGAL--KTLLDLLPERALEHKVVLPLATG 108 (191)
T ss_pred CCHHH--HHHHHhCChhhhCCCEEEEEEec
Confidence 11111 12334442222257888767654
No 314
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.39 E-value=2e+02 Score=25.99 Aligned_cols=29 Identities=17% Similarity=0.032 Sum_probs=18.9
Q ss_pred EEEEEecCCChHHHHHHHHHC--CCeEEEEC
Q 028010 2 VVGVLALQGSFNEHIAALKRL--GVKGVEIR 30 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~--G~~v~~~~ 30 (215)
||.|+-+.+.=.+..+.|... |++|...+
T Consensus 9 ~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D 39 (438)
T PRK04663 9 NVVVVGLGITGLSVVKHLRKYQPQLTVKVID 39 (438)
T ss_pred eEEEEeccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 577777777666776666665 45555543
No 315
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=30.38 E-value=1.7e+02 Score=25.58 Aligned_cols=47 Identities=32% Similarity=0.319 Sum_probs=30.0
Q ss_pred EEEEEecCC----------ChHHHHHHHHHCCCeEEEE---CCC-C--------CCCC-cCEEEEcCCCc
Q 028010 2 VVGVLALQG----------SFNEHIAALKRLGVKGVEI---RKP-D--------QLQN-VSSLIIPGGES 48 (215)
Q Consensus 2 ~v~il~~~G----------~~~s~~~~l~~~G~~v~~~---~~~-~--------~l~~-~d~lil~GG~~ 48 (215)
||+|+.... +-..+...|++.|+++... .+. + .+++ +|.||++||.+
T Consensus 161 rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 161 RVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred EEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 788887532 1224567799999987543 222 1 1233 89999999865
No 316
>PRK06851 hypothetical protein; Provisional
Probab=30.29 E-value=1e+02 Score=27.66 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=27.2
Q ss_pred HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcC
Q 028010 14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~G 45 (215)
.+.+.+.+.|.++.+...+-+.++.|+||||.
T Consensus 233 ~i~~~a~~~G~~v~~~hC~~dPdslD~viIPe 264 (367)
T PRK06851 233 KIAKAAEERGFDVEVYHCGFDPDSLDMVIIPE 264 (367)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCCcceEEecc
Confidence 35677788899999999887778899999998
No 317
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=29.84 E-value=1.2e+02 Score=21.48 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=32.3
Q ss_pred EEEEEecCCChH-----HHHHHHHHCCCeEEEECCCC---CC------CCcCEEEEcCCCc
Q 028010 2 VVGVLALQGSFN-----EHIAALKRLGVKGVEIRKPD---QL------QNVSSLIIPGGES 48 (215)
Q Consensus 2 ~v~il~~~G~~~-----s~~~~l~~~G~~v~~~~~~~---~l------~~~d~lil~GG~~ 48 (215)
||.+....++.. .+...|++.|+++..++... ++ .++|.|.++....
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~ 62 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMT 62 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCc
Confidence 566666666543 46788999999999886432 11 3689998876443
No 318
>PRK12359 flavodoxin FldB; Provisional
Probab=29.59 E-value=1.3e+02 Score=23.78 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=28.3
Q ss_pred CEEEEEec--CCChHHHHHHHH-HCCCe-EEEEC--C--CCCCCCcCEEEEcC
Q 028010 1 MVVGVLAL--QGSFNEHIAALK-RLGVK-GVEIR--K--PDQLQNVSSLIIPG 45 (215)
Q Consensus 1 m~v~il~~--~G~~~s~~~~l~-~~G~~-v~~~~--~--~~~l~~~d~lil~G 45 (215)
|||+|+-. .||=..+++.+. .+|.+ +.+.+ . ++++.++|.||+.-
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~~~v~v~~i~~~~~~~l~~yD~iIlG~ 53 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLMEQYDVLILGI 53 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEcccCChhHHccCCEEEEEe
Confidence 89999876 556556666654 45654 33332 2 24567899888843
No 319
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.41 E-value=2.4e+02 Score=21.06 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=32.3
Q ss_pred EEEEEecCCChHH-----HHHHHHHCCCeEEEECC---CCCC------CCcCEEEEcCCCcchHHHH
Q 028010 2 VVGVLALQGSFNE-----HIAALKRLGVKGVEIRK---PDQL------QNVSSLIIPGGESTTMARL 54 (215)
Q Consensus 2 ~v~il~~~G~~~s-----~~~~l~~~G~~v~~~~~---~~~l------~~~d~lil~GG~~~~~~~l 54 (215)
||.+-...++.+. +...|+..|++|..... ++++ .++|.+.+++-..+.++..
T Consensus 4 ~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~ 70 (132)
T TIGR00640 4 RILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLV 70 (132)
T ss_pred EEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHH
Confidence 4555555555443 34678899999887543 2211 4789999987544444444
No 320
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.35 E-value=3e+02 Score=24.78 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=22.3
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEEC
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~ 30 (215)
.|+|+-+.|.=.++.+.|.+.|++|...+
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D 36 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMD 36 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEe
Confidence 46777777777788888889998877665
No 321
>PRK13337 putative lipid kinase; Reviewed
Probab=29.31 E-value=3.6e+02 Score=22.93 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=30.5
Q ss_pred EEEEEecCC--C------hHHHHHHHHHCCCeEEEE--CCCCC-------C--CCcCEEEEcCCCcch
Q 028010 2 VVGVLALQG--S------FNEHIAALKRLGVKGVEI--RKPDQ-------L--QNVSSLIIPGGESTT 50 (215)
Q Consensus 2 ~v~il~~~G--~------~~s~~~~l~~~G~~v~~~--~~~~~-------l--~~~d~lil~GG~~~~ 50 (215)
|+.++..+. + ...+.+.|++.|+++.++ +...+ + +.+|.||+.||-++.
T Consensus 3 r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 70 (304)
T PRK13337 3 RARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTL 70 (304)
T ss_pred eEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHH
Confidence 777777533 2 224567889999886654 22211 1 357899999986553
No 322
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=29.25 E-value=3.5e+02 Score=22.81 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=38.7
Q ss_pred CEEEEEecCCChH-HHHHHHHH--CCCeEEEECC--C----------------C---C-CCCcCEEEEcCCCcchHHHHH
Q 028010 1 MVVGVLALQGSFN-EHIAALKR--LGVKGVEIRK--P----------------D---Q-LQNVSSLIIPGGESTTMARLA 55 (215)
Q Consensus 1 m~v~il~~~G~~~-s~~~~l~~--~G~~v~~~~~--~----------------~---~-l~~~d~lil~GG~~~~~~~l~ 55 (215)
|||+|+-+ |... .+.+.|.. .++++..+-+ + . + +.+.|.|++.-+....
T Consensus 7 irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h----- 80 (271)
T PRK13302 7 LRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL----- 80 (271)
T ss_pred eEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-----
Confidence 48899887 4433 45666765 3676653311 0 0 1 2457888887553221
Q ss_pred hhCCHHHHHHHHHHcCCcEEEEehH
Q 028010 56 EYHNLFPALREFVKMGKPVWGTCAG 80 (215)
Q Consensus 56 ~~~~l~~~i~~~~~~~~PilGIC~G 80 (215)
.+.+.+++++|++++-.+.|
T Consensus 81 -----~e~~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 81 -----RAIVEPVLAAGKKAIVLSVG 100 (271)
T ss_pred -----HHHHHHHHHcCCcEEEecch
Confidence 23344555667777665555
No 323
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=28.80 E-value=2.7e+02 Score=22.41 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=32.4
Q ss_pred HHHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+.+++++.|+++.+.....+ + .++|++|+.++.+.... .-.+.++.+.+.++|+.-+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~------~~~~~~~~~~~~~ipvV~~ 89 (273)
T cd01541 20 GIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPN------PNIDLYLKLEKLGIPYVFI 89 (273)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecccccccc------ccHHHHHHHHHCCCCEEEE
Confidence 356778888999877643211 1 36899998664321100 0012344444567776543
No 324
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=28.68 E-value=21 Score=28.15 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=22.6
Q ss_pred CcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHHHc---CCcEEEEehHHHHHH
Q 028010 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKM---GKPVWGTCAGLIFLA 85 (215)
Q Consensus 37 ~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~~~---~~PilGIC~G~QlLa 85 (215)
..|.+|+|| +++..-.++-.=.+..+..-+.... ..+.+|+|+-.|++-
T Consensus 117 ~idlvlVP~lafd~~G~RLG~GgGyYDR~L~~~~~~~~~~~~igl~~~~q~~~ 169 (186)
T PF01812_consen 117 EIDLVLVPGLAFDRNGNRLGYGGGYYDRFLARLPPGRKKPLKIGLAFDFQIVD 169 (186)
T ss_dssp G-SEEEEE-SEEETTSBEE-SSSTHHHHHHHHHTS-SS--EEEEEE-GGGEES
T ss_pred cCCEEEeCcEEECCCCCeEecCCCHHHhHHHhhhcccCCCeEEEEeehhheeC
Confidence 679999999 5432111111112222222222222 567999999998765
No 325
>PRK13054 lipid kinase; Reviewed
Probab=28.29 E-value=2.8e+02 Score=23.55 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=28.7
Q ss_pred EEEEEecCCC-----hHHHHHHHHHCCCeEEEEC--CCCC---------CCCcCEEEEcCCCcc
Q 028010 2 VVGVLALQGS-----FNEHIAALKRLGVKGVEIR--KPDQ---------LQNVSSLIIPGGEST 49 (215)
Q Consensus 2 ~v~il~~~G~-----~~s~~~~l~~~G~~v~~~~--~~~~---------l~~~d~lil~GG~~~ 49 (215)
|+.++..... ...+.+.|++.|+++.+.. .+.+ .+++|.||+.||-++
T Consensus 5 ~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGT 68 (300)
T PRK13054 5 KSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGT 68 (300)
T ss_pred eEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccH
Confidence 6666655332 3345677888898866532 2211 135788888887543
No 326
>PRK11096 ansB L-asparaginase II; Provisional
Probab=27.94 E-value=2.5e+02 Score=24.87 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=24.8
Q ss_pred CcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 37 ~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+++||+-| |.+.... .+.+.|+++.++|+||.-.
T Consensus 256 ~~~GiVl~g~G~Gn~~~------~~~~~l~~a~~~GipVV~~ 291 (347)
T PRK11096 256 GYDGIVSAGVGNGNLYK------TVFDTLATAAKNGVAVVRS 291 (347)
T ss_pred cCCEEEEEeECCCCCCH------HHHHHHHHHHHCCCEEEEe
Confidence 479999987 6543211 2467888888899998764
No 327
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=27.71 E-value=3.4e+02 Score=22.26 Aligned_cols=70 Identities=10% Similarity=0.173 Sum_probs=41.6
Q ss_pred EEEEEecCCChH---HHHHHHHHCCCeEEEECCC-------CCCCCcCEEEEcC--CCcchHHHHHhhCCHHHHHHHHHH
Q 028010 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKP-------DQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVK 69 (215)
Q Consensus 2 ~v~il~~~G~~~---s~~~~l~~~G~~v~~~~~~-------~~l~~~d~lil~G--G~~~~~~~l~~~~~l~~~i~~~~~ 69 (215)
||-|+....+.. .....|.+.|..+..+.+. ..+.+-|.+|+-. |... ...+.++.+.+
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~---------~~~~~~~~a~~ 72 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESL---------ELLNLIPHLKR 72 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCH---------HHHHHHHHHHH
Confidence 454555544433 2445677789887766532 2344557666543 3221 12456677777
Q ss_pred cCCcEEEEehH
Q 028010 70 MGKPVWGTCAG 80 (215)
Q Consensus 70 ~~~PilGIC~G 80 (215)
.|.|+++||-.
T Consensus 73 ~g~~ii~iT~~ 83 (268)
T TIGR00393 73 LSHKIIAFTGS 83 (268)
T ss_pred cCCcEEEEECC
Confidence 89999999964
No 328
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.70 E-value=1.2e+02 Score=23.36 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=20.8
Q ss_pred HHHHHHHCCCeEEEECC---CCCC------CCcCEEEEcC
Q 028010 15 HIAALKRLGVKGVEIRK---PDQL------QNVSSLIIPG 45 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~~~---~~~l------~~~d~lil~G 45 (215)
+.++|++.|+++..... ++++ .+.|.|.+++
T Consensus 32 ia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSs 71 (143)
T COG2185 32 IARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSS 71 (143)
T ss_pred HHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEe
Confidence 56889999999876532 2221 3577777776
No 329
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=27.61 E-value=2.5e+02 Score=23.54 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=23.2
Q ss_pred HHHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCC
Q 028010 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG 46 (215)
.+.+++++.|+++.+.....+ + .+.|+||+.+.
T Consensus 19 ~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~ 63 (302)
T TIGR02634 19 IFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQ 63 (302)
T ss_pred HHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 567788899999887654311 1 36899999764
No 330
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=27.58 E-value=41 Score=24.52 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=26.8
Q ss_pred EEEEEecCCChH-HHHHHHHHCCCeEEEECCC-CC----CCCcCEEEEcC
Q 028010 2 VVGVLALQGSFN-EHIAALKRLGVKGVEIRKP-DQ----LQNVSSLIIPG 45 (215)
Q Consensus 2 ~v~il~~~G~~~-s~~~~l~~~G~~v~~~~~~-~~----l~~~d~lil~G 45 (215)
||.|+.- |... .+.+.++++|++++.+... +. .+.+|-+++-+
T Consensus 4 kvLIanr-Geia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~ 52 (110)
T PF00289_consen 4 KVLIANR-GEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEP 52 (110)
T ss_dssp EEEESS--HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEE
T ss_pred EEEEECC-CHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecC
Confidence 5555443 4433 5789999999998887643 32 23577766544
No 331
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=27.57 E-value=1.2e+02 Score=28.26 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=28.6
Q ss_pred CEEEEEe-------------cCCChHH-HHHHHHHCCCeE--EE--ECC-------CCCCCCcCEEEEcCCC
Q 028010 1 MVVGVLA-------------LQGSFNE-HIAALKRLGVKG--VE--IRK-------PDQLQNVSSLIIPGGE 47 (215)
Q Consensus 1 m~v~il~-------------~~G~~~s-~~~~l~~~G~~v--~~--~~~-------~~~l~~~d~lil~GG~ 47 (215)
||++|++ +-+-|.- +.-+|+.+|.++ .. ++. .+.+.++|.+|+-||.
T Consensus 1 m~~~IiDGY~DEPAglGVPPYi~~YpRY~aGAl~~~g~~~~v~Y~tID~lR~~~~~~~~l~k~d~~V~I~G~ 72 (560)
T COG1031 1 MRAAIIDGYTDEPAGLGVPPYIGPYPRYAAGALKKAGKDVEVDYVTIDRLRENFKTLEILNKYDLVVFIAGV 72 (560)
T ss_pred CceeeeccccCCcccCCCCCcccccHHHHHHHHHHcCCCceeEEEEHHHhhccchhhhhhhcCCEEEEEecc
Confidence 7888877 2233443 456889987543 32 221 1246789998887774
No 332
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.35 E-value=2.7e+02 Score=20.93 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=33.9
Q ss_pred EEEEEecCCChHH-----HHHHHHHCCCeEEEECCC---CCC------CCcCEEEEcCCCcchHHHH
Q 028010 2 VVGVLALQGSFNE-----HIAALKRLGVKGVEIRKP---DQL------QNVSSLIIPGGESTTMARL 54 (215)
Q Consensus 2 ~v~il~~~G~~~s-----~~~~l~~~G~~v~~~~~~---~~l------~~~d~lil~GG~~~~~~~l 54 (215)
||.+-...|+.++ +...|+..|+++...... +++ .+.|.|.++--.......+
T Consensus 5 ~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~ 71 (137)
T PRK02261 5 TVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDC 71 (137)
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHH
Confidence 6666667777664 356789999999987642 222 3688888876433333333
No 333
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=27.18 E-value=45 Score=29.10 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=27.3
Q ss_pred CCCcCEEEE-cCCC-cchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 35 LQNVSSLII-PGGE-STTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 35 l~~~d~lil-~GG~-~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
+.++|.||+ ||+. .+.++.|.- .++.+.|++ ..-|...||--|
T Consensus 170 I~~ADlIvlgPGSlyTSIiPnLlv-~gI~eAI~~---s~a~kV~v~N~~ 214 (310)
T TIGR01826 170 IREADLIILGPGSLYTSIIPNLLV-PEIAEALRE---SKAPKVYVCNLM 214 (310)
T ss_pred HHhCCEEEECCCcCHHHhchhcCc-hhHHHHHHh---CCCCEEEEeCCC
Confidence 457899988 5553 455665532 344455543 578999999754
No 334
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=27.11 E-value=3.2e+02 Score=21.72 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=22.9
Q ss_pred HHHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCCC
Q 028010 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGE 47 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG~ 47 (215)
.+.++++..|+++.+.....+ + .++|++|+.+..
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 65 (268)
T cd01575 20 GISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLE 65 (268)
T ss_pred HHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCC
Confidence 345678889999877643211 1 368999998753
No 335
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=26.99 E-value=1.2e+02 Score=28.89 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=24.1
Q ss_pred HHHHHHHHCCCeEEEE---CCC-C--------CCCCcCEEEEcCCCc
Q 028010 14 EHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGES 48 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~---~~~-~--------~l~~~d~lil~GG~~ 48 (215)
.+...|++.|+++... .+. + .++++|.||.+||.+
T Consensus 398 ~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s 444 (597)
T PRK14491 398 TIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVS 444 (597)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 3667799999987543 332 1 235699999999854
No 336
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=26.98 E-value=2.5e+02 Score=24.58 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=25.4
Q ss_pred CcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 37 ~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+++|||-| |.+..-.. ..+.+.|+++.++|+|+.-+
T Consensus 233 ~~~GiVl~~~G~Gn~p~~----~~~~~~l~~~~~~Gi~VV~~ 270 (335)
T PRK09461 233 PVKALILRSYGVGNAPQN----PALLQELKEASERGIVVVNL 270 (335)
T ss_pred CCCEEEEccCCCCCCCCC----HHHHHHHHHHHHCCCEEEEe
Confidence 489999987 54432100 12467888888899998776
No 337
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=26.78 E-value=1e+02 Score=25.96 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=0.0
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEECCC--------------CCCCCcCEEEEc
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKP--------------DQLQNVSSLIIP 44 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~~~--------------~~l~~~d~lil~ 44 (215)
+||.|..-...-..+.+.|+++|+++.....- ..+.+||.||++
T Consensus 19 ~~IlvTRp~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iift 76 (266)
T PRK08811 19 WTLISLRPSGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFT 76 (266)
T ss_pred CEEEEeCCHHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEE
No 338
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=26.65 E-value=73 Score=28.27 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=25.4
Q ss_pred CcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHHHHHH
Q 028010 37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85 (215)
Q Consensus 37 ~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~QlLa 85 (215)
..|.|++-||-.++- .+.+.+....|+|||-.|.-+-+
T Consensus 100 gVdlIvfaGGDGTar-----------DVa~av~~~vPvLGipaGvk~~S 137 (355)
T COG3199 100 GVDLIVFAGGDGTAR-----------DVAEAVGADVPVLGIPAGVKNYS 137 (355)
T ss_pred CceEEEEeCCCccHH-----------HHHhhccCCCceEeeccccceec
Confidence 478888888866542 22233467899999998865443
No 339
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=26.61 E-value=2.1e+02 Score=24.82 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=25.4
Q ss_pred CcCEEEE----cCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEeh-----HHHHHHHhh
Q 028010 37 NVSSLII----PGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA-----GLIFLANKA 88 (215)
Q Consensus 37 ~~d~lil----~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~-----G~QlLa~~~ 88 (215)
+.++|+| |||.....+.+ .+.|++..+.+ |+.-.+- |..++|.+.
T Consensus 97 ~vk~vvL~inSPGG~v~as~~i------~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aA 150 (317)
T COG0616 97 SVKAVVLRINSPGGSVVASELI------ARALKRLRAKK-PVVVSVGGYAASGGYYIALAA 150 (317)
T ss_pred CCceEEEEEECcCCchhHHHHH------HHHHHHHhhcC-CEEEEECCeecchhhhhhccC
Confidence 3455554 77865554444 35566665566 9887653 444555443
No 340
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=26.51 E-value=1.6e+02 Score=23.72 Aligned_cols=62 Identities=18% Similarity=0.409 Sum_probs=31.5
Q ss_pred EEEEEecCCCh----HHHHHHHHHCCCeEEEECCCCCCCCcCEEEEcC----CCcchHHHHHhhCCHHHHHHHHHHcCCc
Q 028010 2 VVGVLALQGSF----NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG----GESTTMARLAEYHNLFPALREFVKMGKP 73 (215)
Q Consensus 2 ~v~il~~~G~~----~s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~G----G~~~~~~~l~~~~~l~~~i~~~~~~~~P 73 (215)
+|+|+.+.|.. ..+.+.|+++.- =++..+|++-+ |...... .+.+.|+++- .++|
T Consensus 1 ~v~vi~i~g~i~~s~~~l~~~l~~a~~----------d~~i~~vvl~~~s~Gg~~~~~~------~l~~~i~~~~-~~kp 63 (207)
T TIGR00706 1 TIAILPVSGAIAVSPEDFDKKIKRIKD----------DKSIKALLLRINSPGGTVVASE------EIYEKLKKLK-AKKP 63 (207)
T ss_pred CEEEEEEEEEEecCHHHHHHHHHHHhh----------CCCccEEEEEecCCCCCHHHHH------HHHHHHHHhc-CCCC
Confidence 46777777643 455566655421 12345555533 3222222 2344555443 5799
Q ss_pred EEEEehH
Q 028010 74 VWGTCAG 80 (215)
Q Consensus 74 ilGIC~G 80 (215)
+...|-|
T Consensus 64 via~v~g 70 (207)
T TIGR00706 64 VVASMGG 70 (207)
T ss_pred EEEEECC
Confidence 9865533
No 341
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=26.14 E-value=1.2e+02 Score=24.24 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=37.8
Q ss_pred hHHHHHHHHHCCCeEEEECC-------C------CCCCCcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 12 FNEHIAALKRLGVKGVEIRK-------P------DQLQNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 12 ~~s~~~~l~~~G~~v~~~~~-------~------~~l~~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
...+...|.+.+.++..+.. | +.+.+||.||+.. +..+.+..... ....+.|++++++|.-++-|
T Consensus 29 v~~l~~~l~~~~~~~~~~p~~~~~~~fP~~~lf~~~L~~yD~vIl~dv~~~~ll~~~~~-~~~~~~l~~yV~~GGgLlmi 107 (177)
T PF07090_consen 29 VDLLHFALLRPGIEVDYIPAHEALIAFPTTLLFDEELNRYDVVILSDVPANSLLKSRRS-PNQLELLADYVRDGGGLLMI 107 (177)
T ss_dssp SHHHHHHHHHTT-EEEEEEHHHHHHH--SSC--SHHHCT-SEEEEES--HHHHHT-----HHHHHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHhcCCccccccccchhhhhCCCchhhhhHHhcCCEEEEeCCCchhcccccCC-HHHHHHHHHHHHhCCEEEEE
Confidence 44567889999998876532 1 3467899999987 32222100000 12357889999887654443
Q ss_pred ehHHH
Q 028010 78 CAGLI 82 (215)
Q Consensus 78 C~G~Q 82 (215)
.|.+
T Consensus 108 -gG~~ 111 (177)
T PF07090_consen 108 -GGPR 111 (177)
T ss_dssp --STT
T ss_pred -eChh
Confidence 4443
No 342
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=26.13 E-value=1.1e+02 Score=25.33 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEE--------CCC-------CCCCCcCEEEEc
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEI--------RKP-------DQLQNVSSLIIP 44 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~--------~~~-------~~l~~~d~lil~ 44 (215)
+||.|..-...-..+.+.|+++|+++..+ .+. .++.++|.||++
T Consensus 4 ~~vlvTRp~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifT 62 (255)
T PRK05752 4 WRLLLTRPAEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVV 62 (255)
T ss_pred CEEEECCcHHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEE
No 343
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.12 E-value=3.5e+02 Score=21.76 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=21.9
Q ss_pred HHHHHHHCCCeEEEECCCCC------------CCCcCEEEEcCC
Q 028010 15 HIAALKRLGVKGVEIRKPDQ------------LQNVSSLIIPGG 46 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~~~~~~------------l~~~d~lil~GG 46 (215)
+.+++++.|+++.+.....+ -.++|++|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 21 VKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred HHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 45677888999887654311 147899998654
No 344
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=25.82 E-value=60 Score=28.81 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=24.8
Q ss_pred CcCEEEEcCC-CcchHHHHHhhCCHHHHHHHHHHcCCcEEEEeh
Q 028010 37 NVSSLIIPGG-ESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (215)
Q Consensus 37 ~~d~lil~GG-~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~ 79 (215)
+.|+||+.|= +.+..+.......+.+.+++..+.++|++.|=.
T Consensus 40 ~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~G 83 (390)
T COG0420 40 KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAG 83 (390)
T ss_pred cCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecC
Confidence 4599999983 332111111112235667776667899998754
No 345
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=25.67 E-value=3.6e+02 Score=24.57 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=19.9
Q ss_pred CEEEEEecCCC--------hHHHHHHHHHCC--CeEEEE
Q 028010 1 MVVGVLALQGS--------FNEHIAALKRLG--VKGVEI 29 (215)
Q Consensus 1 m~v~il~~~G~--------~~s~~~~l~~~G--~~v~~~ 29 (215)
|||+|.-+.|. +.++++.|++.. ++++++
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~ 39 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVM 39 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 89999887663 336778888775 555554
No 346
>PRK09004 FMN-binding protein MioC; Provisional
Probab=25.65 E-value=1.4e+02 Score=22.57 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=27.3
Q ss_pred CEEEEEec--CCChHH----HHHHHHHCCCeEEEECC--CCCCCCcCEEEE
Q 028010 1 MVVGVLAL--QGSFNE----HIAALKRLGVKGVEIRK--PDQLQNVSSLII 43 (215)
Q Consensus 1 m~v~il~~--~G~~~s----~~~~l~~~G~~v~~~~~--~~~l~~~d~lil 43 (215)
.||.|+-- .|+-.. +.+.+++.|+++.+++. .+++.++|.+|+
T Consensus 2 ~~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~~~~l~~~~~li~ 52 (146)
T PRK09004 2 ADITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPLLDDLSASGLWLI 52 (146)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCCHHHhccCCeEEE
Confidence 17777753 555443 44667778998887653 345677887665
No 347
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=25.51 E-value=1.1e+02 Score=29.49 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=34.9
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEEC-----C-C---------CCCCCcCEEEEcCC
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR-----K-P---------DQLQNVSSLIIPGG 46 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~-----~-~---------~~l~~~d~lil~GG 46 (215)
|||.|..-.+.-..+.+.|++.|+++..+. . . .++.+||.||++..
T Consensus 4 ~~VLVTRp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~ 64 (656)
T PRK06975 4 FTVVVTRPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSP 64 (656)
T ss_pred CEEEEeCcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECH
Confidence 688888887777788999999998876532 1 1 24678999999864
No 348
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=25.47 E-value=3.2e+02 Score=21.79 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=31.3
Q ss_pred HHHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+.+++++.|+++.+.....+ + .++|++|+.+.... .. .+.++...+.++|++.+
T Consensus 20 ~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~---~~------~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 20 GAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSD---AV------VPAVKAANEAGIPVFTI 86 (268)
T ss_pred HHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChH---HH------HHHHHHHHHCCCcEEEE
Confidence 356778888999887654211 1 36899998642211 11 12334444467787655
No 349
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.44 E-value=3.5e+02 Score=21.63 Aligned_cols=54 Identities=28% Similarity=0.337 Sum_probs=31.8
Q ss_pred HHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 15 HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
+.+++++.|+++.+.....+ + .+.|++|+.+...... .+.++.+.+.++|+..+
T Consensus 22 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~---------~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 22 FQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAY---------IPGLRKAKQAGIPVVIT 87 (275)
T ss_pred HHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCcccc---------HHHHHHHHHCCCcEEEe
Confidence 45667788999887754321 1 3689999976432211 12334444568887654
No 350
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.34 E-value=3.2e+02 Score=22.78 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=21.6
Q ss_pred HHHHHHHCCCeEEEECCCCC-----------C-C--CcCEEEEcCC
Q 028010 15 HIAALKRLGVKGVEIRKPDQ-----------L-Q--NVSSLIIPGG 46 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~~~~~~-----------l-~--~~d~lil~GG 46 (215)
+.+++++.|+++.++....+ + . .+|+||+.+.
T Consensus 22 i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 22 MQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred HHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 45677888999877643211 1 3 7999999654
No 351
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=25.22 E-value=4.7e+02 Score=22.99 Aligned_cols=101 Identities=21% Similarity=0.142 Sum_probs=55.1
Q ss_pred CEEEEEec-CC---ChHHHHHHHHHCCCeEEEEC-CCC------CCCCcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHH
Q 028010 1 MVVGVLAL-QG---SFNEHIAALKRLGVKGVEIR-KPD------QLQNVSSLIIPG-GESTTMARLAEYHNLFPALREFV 68 (215)
Q Consensus 1 m~v~il~~-~G---~~~s~~~~l~~~G~~v~~~~-~~~------~l~~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~ 68 (215)
|||-|=.. .- -+..+++.|++.|.++.++. +-+ +.-+++..++.+ | .+....+.....-...+.+.+
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g-~~~~~Kl~~~~~R~~~l~~~~ 79 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHG-DSLYGKLLESIERQYKLLKLI 79 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 67766322 11 24578899999999987753 322 123678888877 4 333233222111112233444
Q ss_pred HcCCcEEEEehHHHHHHHhhccCCCCCccccceeeeE
Q 028010 69 KMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCT 105 (215)
Q Consensus 69 ~~~~PilGIC~G~QlLa~~~~~~~~~~~~~lG~~~~~ 105 (215)
.+-+|=+.||.|-.-.++..-. -+.+.+.+.|.+
T Consensus 80 ~~~~pDv~is~~s~~a~~va~~---lgiP~I~f~D~e 113 (335)
T PF04007_consen 80 KKFKPDVAISFGSPEAARVAFG---LGIPSIVFNDTE 113 (335)
T ss_pred HhhCCCEEEecCcHHHHHHHHH---hCCCeEEEecCc
Confidence 5568988888776555533211 134555555543
No 352
>PRK09267 flavodoxin FldA; Validated
Probab=25.21 E-value=1.1e+02 Score=23.47 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=26.5
Q ss_pred CEEEEEec--CCChHHHHHHHHH-CC-CeEEEEC--C--CCCCCCcCEEEEcCC
Q 028010 1 MVVGVLAL--QGSFNEHIAALKR-LG-VKGVEIR--K--PDQLQNVSSLIIPGG 46 (215)
Q Consensus 1 m~v~il~~--~G~~~s~~~~l~~-~G-~~v~~~~--~--~~~l~~~d~lil~GG 46 (215)
|||+|+-. .|+-..+++++.+ ++ .++.+++ . ..++.++|.||+..+
T Consensus 2 mki~IiY~S~tGnT~~vA~~Ia~~l~~~~~~~~~~~~~~~~~l~~~d~vi~g~p 55 (169)
T PRK09267 2 AKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGIP 55 (169)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHhCCCceEEEEhhhCCHhhHhhCCEEEEEec
Confidence 58888876 4555555555432 22 2344433 2 235678999888753
No 353
>PRK10949 protease 4; Provisional
Probab=25.15 E-value=1.5e+02 Score=28.51 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCcCEEEE----cCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010 36 QNVSSLII----PGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (215)
Q Consensus 36 ~~~d~lil----~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC 78 (215)
++..+||+ |||.....+.+ .+.|+++.+.+||+...+
T Consensus 363 ~~vkaVvLrInSpGGs~~ase~i------~~~i~~~r~~gKPVvas~ 403 (618)
T PRK10949 363 PKVKAIVLRVNSPGGSVTASEVI------RAELAAARAAGKPVVVSM 403 (618)
T ss_pred CCCcEEEEEecCCCCcHHHHHHH------HHHHHHHHhcCCcEEEEE
Confidence 34567776 45543333333 345555555799999754
No 354
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=25.14 E-value=4.2e+02 Score=22.33 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=43.2
Q ss_pred CEEEEEecCC--ChHHHHHHHHHCCCeEEEEC-C-C---CCCC--C--cCEEEEcCCCcchHHHHHhhCCHHHHHHHHHH
Q 028010 1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIR-K-P---DQLQ--N--VSSLIIPGGESTTMARLAEYHNLFPALREFVK 69 (215)
Q Consensus 1 m~v~il~~~G--~~~s~~~~l~~~G~~v~~~~-~-~---~~l~--~--~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~ 69 (215)
||+.|+..+. ++...++.|++.|+...+.- . . +.+. . +--+-++.+.....+.+. .+.+++.+.++
T Consensus 92 ~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i~---~~l~~i~~~l~ 168 (241)
T PTZ00393 92 IKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVDIVS---NWLTIVNNVIK 168 (241)
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHHHHH---HHHHHHHHHHh
Confidence 5677777655 35567799999999754421 1 1 1221 1 123445554221122221 23566666677
Q ss_pred cCCcEEEEeh
Q 028010 70 MGKPVWGTCA 79 (215)
Q Consensus 70 ~~~PilGIC~ 79 (215)
.|.+|+-=|.
T Consensus 169 ~g~~VaVHC~ 178 (241)
T PTZ00393 169 NNRAVAVHCV 178 (241)
T ss_pred cCCeEEEECC
Confidence 8999998884
No 355
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.06 E-value=3.4e+02 Score=24.44 Aligned_cols=29 Identities=24% Similarity=0.090 Sum_probs=16.7
Q ss_pred EEEEEecCCChHHHHHHHHHCCCeEEEEC
Q 028010 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (215)
Q Consensus 2 ~v~il~~~G~~~s~~~~l~~~G~~v~~~~ 30 (215)
||.|+-..+.=.+..+.|.+.|++|...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D 30 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSD 30 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEEC
Confidence 45566655554555666666666655543
No 356
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=25.05 E-value=59 Score=27.76 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCcEEEEehHHHHHHHhhcc
Q 028010 60 LFPALREFVKMGKPVWGTCAGLIFLANKAVG 90 (215)
Q Consensus 60 l~~~i~~~~~~~~PilGIC~G~QlLa~~~~~ 90 (215)
+.+.|++.+++++|++|.+.|.-|-|+....
T Consensus 3 il~~l~~~i~~~~pIig~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 3 ILDRLRAQIKAGKPIIGAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEEeeccchhhHHHHh
Confidence 3567888889999999999999999988653
No 357
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=24.93 E-value=1.7e+02 Score=25.01 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=27.0
Q ss_pred cCCChH--HHHHHHHHCCCeEEEECCC----------------CCCCCcCEEEEcC
Q 028010 8 LQGSFN--EHIAALKRLGVKGVEIRKP----------------DQLQNVSSLIIPG 45 (215)
Q Consensus 8 ~~G~~~--s~~~~l~~~G~~v~~~~~~----------------~~l~~~d~lil~G 45 (215)
..|+.. .+.+.|.+.|+++..+..+ ..+.++|.+|+|=
T Consensus 7 ~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~ 62 (287)
T TIGR02853 7 IGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPV 62 (287)
T ss_pred EcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECC
Confidence 456655 4678999999998876432 1246789999853
No 358
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=24.80 E-value=55 Score=28.54 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=26.8
Q ss_pred CCCcCEEEE-cCCC-cchHHHHHhhCCHHHHHHHHHHcCCcEEEEehHH
Q 028010 35 LQNVSSLII-PGGE-STTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (215)
Q Consensus 35 l~~~d~lil-~GG~-~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC~G~ 81 (215)
+.++|.||+ ||+. .+..+.|.- .++.+.|++ ..-|...||--+
T Consensus 172 I~~ADlIvlgPGSlyTSI~P~Llv-~gi~eAi~~---s~a~kV~V~ni~ 216 (309)
T cd07044 172 IEKADNIVIGPGSLYTSILPNISV-PGIREALKK---TXAKKVYVSNIX 216 (309)
T ss_pred HHhCCEEEECCCcCHHHhhhhcCc-HhHHHHHHh---cCCCeEEECCCC
Confidence 357899998 4453 455555532 344455544 467899999764
No 359
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=24.32 E-value=1.6e+02 Score=28.06 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=24.0
Q ss_pred HHHHHHHHCCCeEEEE---CCC-C--------CCCCcCEEEEcCCCc
Q 028010 14 EHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGES 48 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~---~~~-~--------~l~~~d~lil~GG~~ 48 (215)
.+...|++.|+++... .+. + .++++|.||.+||.+
T Consensus 217 ~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s 263 (633)
T PRK14498 217 TLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTS 263 (633)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCc
Confidence 4667899999987543 322 1 124699999999854
No 360
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=24.31 E-value=3.8e+02 Score=21.62 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=22.0
Q ss_pred HHHHHHHHCCCeEEEECCCC----CCCCcCEEEEcC
Q 028010 14 EHIAALKRLGVKGVEIRKPD----QLQNVSSLIIPG 45 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~----~l~~~d~lil~G 45 (215)
.+.+++++.|+.+.+..... ...+.|++|+.+
T Consensus 25 gi~~~~~~~g~~~~~~~~~~~~~~~~~~vdgii~~~ 60 (270)
T cd01544 25 GIEKRAQELGIELTKFFRDDDLLEILEDVDGIIAIG 60 (270)
T ss_pred HHHHHHHHcCCEEEEEeccchhHHhccCcCEEEEec
Confidence 34577888999987765321 225789999875
No 361
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=24.20 E-value=5e+02 Score=22.89 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=43.9
Q ss_pred EEEEEecCCC------hHHHHHHHHHCCCeEEEECCC--CC--------CCCcCEEEEcCCCcchHHHHHhhCCHHHHHH
Q 028010 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--DQ--------LQNVSSLIIPGGESTTMARLAEYHNLFPALR 65 (215)
Q Consensus 2 ~v~il~~~G~------~~s~~~~l~~~G~~v~~~~~~--~~--------l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~ 65 (215)
||+|+--.|. ...+.+.++..|+++.....+ .+ ..+.|.+++|=..... ......+.
T Consensus 161 ~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~-------s~~~~l~~ 233 (322)
T COG2984 161 SIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIV-------SAIESLLQ 233 (322)
T ss_pred eEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHHH-------HHHHHHHH
Confidence 7889988886 224566778889998876432 22 2468888888432111 12234556
Q ss_pred HHHHcCCcEEEEe
Q 028010 66 EFVKMGKPVWGTC 78 (215)
Q Consensus 66 ~~~~~~~PilGIC 78 (215)
...+.++|+++==
T Consensus 234 ~a~~~kiPli~sd 246 (322)
T COG2984 234 VANKAKIPLIASD 246 (322)
T ss_pred HHHHhCCCeecCC
Confidence 6666789987643
No 362
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=24.16 E-value=4.2e+02 Score=22.00 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=42.5
Q ss_pred EEEEEecCCChH---HHHHHHHHCCCeEEEECCC-------CCCCCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcC
Q 028010 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKP-------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG 71 (215)
Q Consensus 2 ~v~il~~~G~~~---s~~~~l~~~G~~v~~~~~~-------~~l~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~ 71 (215)
||-|+..+.+.. .....|.+.|..+....+. ..+..-|.+|+-.-.+.. .. +.+.++.+.+.|
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~-~~------~~~~~~~ak~~g 202 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGER-RE------LNLAADEALRVG 202 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCC-HH------HHHHHHHHHHcC
Confidence 566666655433 2345677789887765443 134556766654311111 11 245566677789
Q ss_pred CcEEEEehH
Q 028010 72 KPVWGTCAG 80 (215)
Q Consensus 72 ~PilGIC~G 80 (215)
.+++.|+-.
T Consensus 203 a~iI~IT~~ 211 (278)
T PRK11557 203 AKVLAITGF 211 (278)
T ss_pred CCEEEEcCC
Confidence 999999864
No 363
>PRK10329 glutaredoxin-like protein; Provisional
Probab=23.91 E-value=2.3e+02 Score=19.01 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=24.6
Q ss_pred CEEEEEecCCChHH--HHHHHHHCCCeEEEECCC
Q 028010 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIRKP 32 (215)
Q Consensus 1 m~v~il~~~G~~~s--~~~~l~~~G~~v~~~~~~ 32 (215)
|||.++...+...+ +.+.|++.|++++.++..
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~ 34 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRGFDFEMINVD 34 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCCCceEEEECC
Confidence 78888888887553 567899999998877643
No 364
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=23.87 E-value=5.8e+02 Score=23.53 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=40.9
Q ss_pred EEEEEec-CCC-hHHHHHHHHHC--CCeEEEECCC-----------------CCCCCcCEEEEcCCCcchHHHHHhhCCH
Q 028010 2 VVGVLAL-QGS-FNEHIAALKRL--GVKGVEIRKP-----------------DQLQNVSSLIIPGGESTTMARLAEYHNL 60 (215)
Q Consensus 2 ~v~il~~-~G~-~~s~~~~l~~~--G~~v~~~~~~-----------------~~l~~~d~lil~GG~~~~~~~l~~~~~l 60 (215)
+|||+.- .|+ ..++.+.++++ .+++.++... +...++|.||+.=|-++ .++|-. .+-
T Consensus 137 ~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS-iEDLW~-FNd 214 (440)
T COG1570 137 KIGVITSPTGAALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS-IEDLWA-FND 214 (440)
T ss_pred eEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch-HHHHhc-cCh
Confidence 7888875 343 34667777665 3566555431 23456999888332222 233322 222
Q ss_pred HHHHHHHHHcCCcEE
Q 028010 61 FPALREFVKMGKPVW 75 (215)
Q Consensus 61 ~~~i~~~~~~~~Pil 75 (215)
....|...+..+||.
T Consensus 215 E~vaRAi~~s~iPvI 229 (440)
T COG1570 215 EIVARAIAASRIPVI 229 (440)
T ss_pred HHHHHHHHhCCCCeE
Confidence 355667777889986
No 365
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=23.65 E-value=1.6e+02 Score=20.64 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=22.9
Q ss_pred hHHHHHHHHHCCCeEEE-ECC--CC-------------CCCCcCEEEEcCC
Q 028010 12 FNEHIAALKRLGVKGVE-IRK--PD-------------QLQNVSSLIIPGG 46 (215)
Q Consensus 12 ~~s~~~~l~~~G~~v~~-~~~--~~-------------~l~~~d~lil~GG 46 (215)
+....+.|+..|..|.- ... ++ .|.+||+|++.+|
T Consensus 18 f~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~l~g 68 (92)
T PF14359_consen 18 FNAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYMLPG 68 (92)
T ss_pred HHHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEEcCC
Confidence 44678889999976542 111 21 2458999998776
No 366
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=23.63 E-value=2.8e+02 Score=21.38 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=23.1
Q ss_pred ChHHHHHHH----HHCCCeEEEECCC----------CCCCCcCEEEE-cCCCc
Q 028010 11 SFNEHIAAL----KRLGVKGVEIRKP----------DQLQNVSSLII-PGGES 48 (215)
Q Consensus 11 ~~~s~~~~l----~~~G~~v~~~~~~----------~~l~~~d~lil-~GG~~ 48 (215)
++.++.+.+ +++|+++...... +..+++|++|| ||++.
T Consensus 25 tl~di~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~T 77 (141)
T TIGR01088 25 TLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALT 77 (141)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHh
Confidence 344444444 4568888876533 12245899888 88765
No 367
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.40 E-value=3.8e+02 Score=21.28 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=21.4
Q ss_pred HHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCC
Q 028010 15 HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG 46 (215)
+.+++++.|+++.+.....+ + .++|++|+.+.
T Consensus 21 ~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 21 LEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45677888999877643211 1 36899999764
No 368
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=23.17 E-value=1.8e+02 Score=27.23 Aligned_cols=45 Identities=20% Similarity=0.179 Sum_probs=26.5
Q ss_pred CEEEEEecCCChHHHHHHHHHCCC--eEEEECC-------C---------CC-----CCCcCEEEEcC
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGV--KGVEIRK-------P---------DQ-----LQNVSSLIIPG 45 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~--~v~~~~~-------~---------~~-----l~~~d~lil~G 45 (215)
|||.++.=.=++..+.+.++..+. +|.+... + .. ...||.|++||
T Consensus 1 m~il~vTG~lA~~~v~~~~~~~~~~~~V~~~~v~VAA~~tp~~i~~~l~~~~~~~~~~~~yD~ilvpG 68 (499)
T TIGR00284 1 MKVLLITGRLAKGLIEGILKESDQEAEVIVLNVHVAGMLSTKTIAKILKSRRDLLERARSVDILLIPG 68 (499)
T ss_pred CeEEEEcchhhHHHHHHHHhcCCCceEEEEcCCeEEEecCHHHHHHHhhcccccccccCCCcEEEeCC
Confidence 776655433345566777776666 4443321 1 11 24589999999
No 369
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=23.15 E-value=4.1e+02 Score=22.55 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=45.9
Q ss_pred EEEEEecCCChH---HHHHHHHHCCCeEEEECCC-------CCCCCcCEEEEcC--CCcchHHHHHhhCCHHHHHHHHHH
Q 028010 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKP-------DQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVK 69 (215)
Q Consensus 2 ~v~il~~~G~~~---s~~~~l~~~G~~v~~~~~~-------~~l~~~d~lil~G--G~~~~~~~l~~~~~l~~~i~~~~~ 69 (215)
||-|.....++. .....|.+.|..+..+.+. ..+..-|.+|+-. |... .+.+.++.+.+
T Consensus 44 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~---------~~~~~~~~ak~ 114 (321)
T PRK11543 44 KVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAK---------ELDLIIPRLED 114 (321)
T ss_pred cEEEEecChhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcH---------HHHHHHHHHHH
Confidence 456666655544 2355677889887776543 2234557666533 3221 12456666777
Q ss_pred cCCcEEEEeh-HHHHHHHh
Q 028010 70 MGKPVWGTCA-GLIFLANK 87 (215)
Q Consensus 70 ~~~PilGIC~-G~QlLa~~ 87 (215)
+|.|+++|+. +---|++.
T Consensus 115 ~g~~vI~iT~~~~s~la~~ 133 (321)
T PRK11543 115 KSIALLAMTGKPTSPLGLA 133 (321)
T ss_pred cCCeEEEEECCCCChhHHh
Confidence 8999999996 33445544
No 370
>PLN02522 ATP citrate (pro-S)-lyase
Probab=23.08 E-value=2.7e+02 Score=26.82 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=44.2
Q ss_pred EEEEEecCCChH-HHHHHHHHCCCeEE--E-ECC-CC-------------CCCCcCEEEEcC--CCcchHHHHHhhCCHH
Q 028010 2 VVGVLALQGSFN-EHIAALKRLGVKGV--E-IRK-PD-------------QLQNVSSLIIPG--GESTTMARLAEYHNLF 61 (215)
Q Consensus 2 ~v~il~~~G~~~-s~~~~l~~~G~~v~--~-~~~-~~-------------~l~~~d~lil~G--G~~~~~~~l~~~~~l~ 61 (215)
+|+++.-.|.+. ++.+.+.+.|+-.. + +.. +. +=++.+.|++-| |..+. +.+.
T Consensus 169 ~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e-------~~f~ 241 (608)
T PLN02522 169 SVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDE-------YSLV 241 (608)
T ss_pred cEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhH-------HHHH
Confidence 478888888776 56778888776332 2 222 11 113566777765 22221 1234
Q ss_pred HHHHHHHHcCCcEEEEehHHHH
Q 028010 62 PALREFVKMGKPVWGTCAGLIF 83 (215)
Q Consensus 62 ~~i~~~~~~~~PilGIC~G~Ql 83 (215)
+.+++.. .+|||.+.|.|---
T Consensus 242 ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 242 EALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHhc-CCCCEEEEeccCCC
Confidence 5666644 68999999988743
No 371
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=23.07 E-value=1.6e+02 Score=24.28 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=50.2
Q ss_pred CEEEEEecCCChHHHHHHHHHCCCeEEEEC-----C----C---CCCCCcCEEEEcCCCcc--hHHHHHhhCCHHHHHHH
Q 028010 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR-----K----P---DQLQNVSSLIIPGGEST--TMARLAEYHNLFPALRE 66 (215)
Q Consensus 1 m~v~il~~~G~~~s~~~~l~~~G~~v~~~~-----~----~---~~l~~~d~lil~GG~~~--~~~~l~~~~~l~~~i~~ 66 (215)
|||.|..-+..-..+...|+..|.++..+. + . .++..+|.|+++-...- ..+.+.. .+. +
T Consensus 2 ~~vlvtR~~~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~-~~~-----~ 75 (248)
T COG1587 2 MRVLVTRPREQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKE-QGL-----D 75 (248)
T ss_pred cEEEEeCchhhhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHHHHHHHHHHh-hcc-----c
Confidence 688888888666678899999998755432 1 1 24456899999864321 1222211 010 0
Q ss_pred HHHcCCcEEEEehHHHHHHHhhc
Q 028010 67 FVKMGKPVWGTCAGLIFLANKAV 89 (215)
Q Consensus 67 ~~~~~~PilGIC~G~QlLa~~~~ 89 (215)
.-.++++++|.-...-..+.+|
T Consensus 76 -~~~~~~i~aVG~~Ta~~l~~~G 97 (248)
T COG1587 76 -ALKNKKIAAVGEKTAEALRKLG 97 (248)
T ss_pred -ccccCeEEEEcHHHHHHHHHhC
Confidence 1146889888876665555554
No 372
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=22.89 E-value=1.9e+02 Score=27.36 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=22.9
Q ss_pred HHHHHHHCCCeEEEE---CCC-C--------CCCCcCEEEEcCCCc
Q 028010 15 HIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGES 48 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~---~~~-~--------~l~~~d~lil~GG~~ 48 (215)
+...|++.|+++... .+. + .++++|.||++||.+
T Consensus 211 L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS 256 (546)
T PRK14497 211 LYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGTS 256 (546)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 455689999986543 322 1 235799999999854
No 373
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=22.88 E-value=3.5e+02 Score=22.17 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=46.5
Q ss_pred CEEEEEecCCChHH-HHHHHHHCCCeEEEECCCCC----CC-CcCEEEEcCCCc--chHHHHHhhCCHHHHHHHHHHcCC
Q 028010 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPDQ----LQ-NVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGK 72 (215)
Q Consensus 1 m~v~il~~~G~~~s-~~~~l~~~G~~v~~~~~~~~----l~-~~d~lil~GG~~--~~~~~l~~~~~l~~~i~~~~~~~~ 72 (215)
|||.|++-+-+... +...|+..|+++....+.++ +. .+|.|++==+.+ +.++ +...||+......
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlviLD~~lP~~dG~~-------~~~~iR~~~~~~~ 73 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQPDLVLLDLMLPDLDGLE-------LCRRLRAKKGSGP 73 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCEEEEECCCCCCCHHH-------HHHHHHhhcCCCC
Confidence 67888876655554 56789999999999886521 11 199988833222 2222 2345664433578
Q ss_pred cEEEEehH
Q 028010 73 PVWGTCAG 80 (215)
Q Consensus 73 PilGIC~G 80 (215)
||+-+..-
T Consensus 74 PIi~Lta~ 81 (229)
T COG0745 74 PIIVLTAR 81 (229)
T ss_pred cEEEEECC
Confidence 89988866
No 374
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.83 E-value=4.2e+02 Score=21.54 Aligned_cols=31 Identities=19% Similarity=-0.003 Sum_probs=21.6
Q ss_pred HHHHHHHCCCeEEEECCCCC-------C-----CCcCEEEEcC
Q 028010 15 HIAALKRLGVKGVEIRKPDQ-------L-----QNVSSLIIPG 45 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~~~~~~-------l-----~~~d~lil~G 45 (215)
+.+++++.|+++.+.....+ + .+.|+||+.+
T Consensus 21 i~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~ 63 (272)
T cd06313 21 ADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDP 63 (272)
T ss_pred HHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 55677889999988754311 1 3689999964
No 375
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=22.72 E-value=3.2e+02 Score=23.93 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=24.8
Q ss_pred CcCEEEEcC-CCcchHHHHHhhCCHHHHHHHHHHcCCcEEEE
Q 028010 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (215)
Q Consensus 37 ~~d~lil~G-G~~~~~~~l~~~~~l~~~i~~~~~~~~PilGI 77 (215)
.+++|||-| |.+..-.. +.+.|+++.++|+||.-+
T Consensus 235 ~~~GiVl~~~G~Gn~p~~------~~~~l~~a~~~Gi~VV~~ 270 (336)
T TIGR00519 235 GYKGIVIEGTGLGHAPQN------KLQELQEASDRGVVVVMT 270 (336)
T ss_pred CCCEEEEeeECCCCCCHH------HHHHHHHHHHCCCEEEEe
Confidence 479999987 65433221 256788888899998876
No 376
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=22.65 E-value=1.6e+02 Score=24.12 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=29.8
Q ss_pred EEEEEecCCCh--HHHHHHHHHCCCeEEEECCCC----------CCCCcCEEEEcC
Q 028010 2 VVGVLALQGSF--NEHIAALKRLGVKGVEIRKPD----------QLQNVSSLIIPG 45 (215)
Q Consensus 2 ~v~il~~~G~~--~s~~~~l~~~G~~v~~~~~~~----------~l~~~d~lil~G 45 (215)
||+||...-.. ..+.++++++|+++.++...+ .+..+|.++.-.
T Consensus 1 ~~~~~~~~~~~~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~ 56 (277)
T TIGR00768 1 KLAILYDRIRLDEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRI 56 (277)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEec
Confidence 58888874433 357889999999988775321 144678777644
No 377
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=22.01 E-value=1.4e+02 Score=21.72 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=21.2
Q ss_pred HHHHHHHCCCeEEEECCC----CCCCCcCEEEEcC
Q 028010 15 HIAALKRLGVKGVEIRKP----DQLQNVSSLIIPG 45 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~~~~----~~l~~~d~lil~G 45 (215)
+.+.++..|+++.+.+.. .++.++|.||+..
T Consensus 19 i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgs 53 (140)
T TIGR01753 19 IAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGC 53 (140)
T ss_pred HHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEc
Confidence 445666778888776532 3566799988865
No 378
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.90 E-value=4.3e+02 Score=21.30 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=32.9
Q ss_pred HHHHHHHCCCeEEEECCCC-C----------C--CCcCEEEEcCCCcchHHHHHhhCCHHHHHHHHHHcCCcEEEEe
Q 028010 15 HIAALKRLGVKGVEIRKPD-Q----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~~~~~-~----------l--~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~~~~~~~PilGIC 78 (215)
+.+++++.|+++.+..... + + .+.|++|+.+..... . .+.++.+.+.++|++.+.
T Consensus 22 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~---~------~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 22 AEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDA---L------DPAIKRAVAAGIPVISFN 89 (271)
T ss_pred HHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHH---h------HHHHHHHHHCCCeEEEeC
Confidence 4567777899988765322 1 1 368999987642211 1 123444555688887774
No 379
>PRK15029 arginine decarboxylase; Provisional
Probab=21.82 E-value=1.5e+02 Score=29.28 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=31.2
Q ss_pred CEEEEEecCCC---------hHHHHHHHHHCCCeEEEECCCCC----C---CCcCEEEE
Q 028010 1 MVVGVLALQGS---------FNEHIAALKRLGVKGVEIRKPDQ----L---QNVSSLII 43 (215)
Q Consensus 1 m~v~il~~~G~---------~~s~~~~l~~~G~~v~~~~~~~~----l---~~~d~lil 43 (215)
|||.|++-+-. ...+...|+..|+++..+.+.++ + .++|.+|+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL 59 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF 59 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE
Confidence 88888876553 44677899999999998876432 2 25788876
No 380
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.72 E-value=4.3e+02 Score=21.23 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=22.4
Q ss_pred HHHHHHHHCCCeEEEECCCCC----------C--CCcCEEEEcCC
Q 028010 14 EHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~----------l--~~~d~lil~GG 46 (215)
.+.+.+++.|+++.+.....+ + ...|++|+.++
T Consensus 20 ~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 20 GAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred HHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 356778889999877643211 1 36899998765
No 381
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=21.71 E-value=4e+02 Score=21.19 Aligned_cols=62 Identities=19% Similarity=0.351 Sum_probs=38.1
Q ss_pred EEEEEecCCChHH-----HHHHHHHCCCeEEEECC--C-CCC------CCcCEEEEcCCCcchHHHHHhhCCHHHHHHH
Q 028010 2 VVGVLALQGSFNE-----HIAALKRLGVKGVEIRK--P-DQL------QNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (215)
Q Consensus 2 ~v~il~~~G~~~s-----~~~~l~~~G~~v~~~~~--~-~~l------~~~d~lil~GG~~~~~~~l~~~~~l~~~i~~ 66 (215)
||.+-...|+.++ +...|+..|+++..... + +++ .++|.|.++......+..+. .+.+.+++
T Consensus 84 ~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~---~~i~~lr~ 159 (201)
T cd02070 84 KVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMK---EVIEALKE 159 (201)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHH---HHHHHHHH
Confidence 5666666777665 35678999999976543 2 222 46898888875444444442 23455554
No 382
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=21.69 E-value=4.4e+02 Score=22.09 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=41.0
Q ss_pred EEEEEecCCChH---HHHHHHHHCCCeEEEECCCC-------CCCCcCEEEEcC--CCcchHHHHHhhCCHHHHHHHHHH
Q 028010 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVK 69 (215)
Q Consensus 2 ~v~il~~~G~~~---s~~~~l~~~G~~v~~~~~~~-------~l~~~d~lil~G--G~~~~~~~l~~~~~l~~~i~~~~~ 69 (215)
+|.|+..+++.. .+...|.+.|..+....+.. .+..-|.+|+-. |... . +.+.++.+.+
T Consensus 142 ~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~---~------~~~~~~~ak~ 212 (292)
T PRK11337 142 QRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTS---D------VIEAVELAKK 212 (292)
T ss_pred eEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCH---H------HHHHHHHHHH
Confidence 566666655433 23456777898887765431 244557655533 3221 1 2355666667
Q ss_pred cCCcEEEEeh
Q 028010 70 MGKPVWGTCA 79 (215)
Q Consensus 70 ~~~PilGIC~ 79 (215)
.|.++++|+.
T Consensus 213 ~g~~ii~IT~ 222 (292)
T PRK11337 213 NGAKIICITN 222 (292)
T ss_pred CCCeEEEEeC
Confidence 8999999985
No 383
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=21.16 E-value=4.9e+02 Score=21.66 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=37.1
Q ss_pred EEEEEec--CCChH-----HHHHHHHH--CCCeEEEECCCCC-------C-----CCcCEEEEcCCCcchHHHHHhhCCH
Q 028010 2 VVGVLAL--QGSFN-----EHIAALKR--LGVKGVEIRKPDQ-------L-----QNVSSLIIPGGESTTMARLAEYHNL 60 (215)
Q Consensus 2 ~v~il~~--~G~~~-----s~~~~l~~--~G~~v~~~~~~~~-------l-----~~~d~lil~GG~~~~~~~l~~~~~l 60 (215)
||+|+.- ...+. .+.+++++ .|+++.+.....+ + .++|++|+.+..... +
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~---~------ 71 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTA---A------ 71 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhh---H------
Confidence 4666653 23333 35566777 7788776654211 1 368999986532211 1
Q ss_pred HHHHHHHHHcCCcEEEE
Q 028010 61 FPALREFVKMGKPVWGT 77 (215)
Q Consensus 61 ~~~i~~~~~~~~PilGI 77 (215)
.+.++++.+.++|+..+
T Consensus 72 ~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 72 QTVINKAKQKNIPVIFF 88 (303)
T ss_pred HHHHHHHHHCCCCEEEe
Confidence 23344555578887654
No 384
>PRK06851 hypothetical protein; Provisional
Probab=21.00 E-value=1.7e+02 Score=26.19 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCeEEEECCCCCCCCcCEEEEcC
Q 028010 14 EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (215)
Q Consensus 14 s~~~~l~~~G~~v~~~~~~~~l~~~d~lil~G 45 (215)
.+.+.+.+.|.+|..+..+.+-+..|+||+|.
T Consensus 49 ~i~~~~~~~g~~Ve~~~~~~d~~slDgviip~ 80 (367)
T PRK06851 49 KIGEEFLEKGYDVEFLHCSSDNDSLDGVIIPE 80 (367)
T ss_pred HHHHHHHHcCCeEEEEEcCCCCCceeeEEecC
Confidence 35666778899999887666667889999988
No 385
>smart00642 Aamy Alpha-amylase domain.
Probab=20.76 E-value=1.9e+02 Score=22.44 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=15.9
Q ss_pred CChHHHH---HHHHHCCCeEEEECCC
Q 028010 10 GSFNEHI---AALKRLGVKGVEIRKP 32 (215)
Q Consensus 10 G~~~s~~---~~l~~~G~~v~~~~~~ 32 (215)
|++..+. +.|+++|++.+.+.+.
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi 41 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPI 41 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcc
Confidence 4566543 4688999998877654
No 386
>PRK13059 putative lipid kinase; Reviewed
Probab=20.61 E-value=5.3e+02 Score=21.83 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=30.4
Q ss_pred EEEEEecCC--C------hHHHHHHHHHCCCeEEEECC--CC-------C-CCCcCEEEEcCCCcch
Q 028010 2 VVGVLALQG--S------FNEHIAALKRLGVKGVEIRK--PD-------Q-LQNVSSLIIPGGESTT 50 (215)
Q Consensus 2 ~v~il~~~G--~------~~s~~~~l~~~G~~v~~~~~--~~-------~-l~~~d~lil~GG~~~~ 50 (215)
|+.++..+. + ...+.+.|++.|+++.++.. .. . -+.+|.||+.||-++.
T Consensus 3 ~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGTv 69 (295)
T PRK13059 3 KVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLEYDLKNAFKDIDESYKYILIAGGDGTV 69 (295)
T ss_pred EEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCcchHHHHHHHhhcCCCEEEEECCccHH
Confidence 777766532 2 12456788899998765432 11 1 1357899999986653
No 387
>PF12558 DUF3744: ATP-binding cassette cobalt transporter; InterPro: IPR022216 This domain family is found in bacteria, and is approximately 70 amino acids in length. The family is found in association with PF00005 from PFAM. There is a conserved REP sequence motif. There is a single completely conserved residue P that may be functionally important. The proteins in this family are frequently annotated as ABC Cobalt transporters however there is little accompanying literature to confirm this. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Probab=20.52 E-value=52 Score=22.14 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=16.7
Q ss_pred HHHHHHHCCCeEEEECCCCCCC
Q 028010 15 HIAALKRLGVKGVEIRKPDQLQ 36 (215)
Q Consensus 15 ~~~~l~~~G~~v~~~~~~~~l~ 36 (215)
++.+|+.+|+++.-.....+++
T Consensus 15 YitALk~ag~~l~~~~~l~~l~ 36 (74)
T PF12558_consen 15 YITALKYAGVDLTKEDHLSDLD 36 (74)
T ss_pred HHHHHHHcCCCcccCCCccCHH
Confidence 5789999999988766655543
No 388
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=20.43 E-value=5e+02 Score=21.71 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=16.5
Q ss_pred CEEEEEecCCChH-HHHHHHHHC--CCeEE
Q 028010 1 MVVGVLALQGSFN-EHIAALKRL--GVKGV 27 (215)
Q Consensus 1 m~v~il~~~G~~~-s~~~~l~~~--G~~v~ 27 (215)
|||+|+-. |... .+.+.+.+. ++++.
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv 30 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELY 30 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEE
Confidence 68999987 6554 456666654 34443
No 389
>PRK15482 transcriptional regulator MurR; Provisional
Probab=20.39 E-value=5.1e+02 Score=21.64 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=41.4
Q ss_pred EEEEEecCCChH---HHHHHHHHCCCeEEEECCC-------CCCCCcCEEEEcC--CCcchHHHHHhhCCHHHHHHHHHH
Q 028010 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKP-------DQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVK 69 (215)
Q Consensus 2 ~v~il~~~G~~~---s~~~~l~~~G~~v~~~~~~-------~~l~~~d~lil~G--G~~~~~~~l~~~~~l~~~i~~~~~ 69 (215)
||-|+..+.+.. .+...|.+.|..+....+. ..+..-|.+|+-. |... ...+.++.+.+
T Consensus 137 ~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~---------~~~~~~~~a~~ 207 (285)
T PRK15482 137 FIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKK---------EIVLCAEAARK 207 (285)
T ss_pred eeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCH---------HHHHHHHHHHH
Confidence 566666655433 2345667789888765432 2344457766544 3221 12455666667
Q ss_pred cCCcEEEEehH
Q 028010 70 MGKPVWGTCAG 80 (215)
Q Consensus 70 ~~~PilGIC~G 80 (215)
.|.++++||--
T Consensus 208 ~g~~iI~IT~~ 218 (285)
T PRK15482 208 QGATVIAITSL 218 (285)
T ss_pred CCCEEEEEeCC
Confidence 89999999953
No 390
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=20.16 E-value=4.5e+02 Score=20.91 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=35.4
Q ss_pred EEEEEecCCChHHH-----HHHHHHCCCeEEEECCC---CCC------CCcCEEEEcCCCcchHHHH
Q 028010 2 VVGVLALQGSFNEH-----IAALKRLGVKGVEIRKP---DQL------QNVSSLIIPGGESTTMARL 54 (215)
Q Consensus 2 ~v~il~~~G~~~s~-----~~~l~~~G~~v~~~~~~---~~l------~~~d~lil~GG~~~~~~~l 54 (215)
||.+-...|+.+++ ...|+..|++++..... +++ .++|.|.++-.....+..+
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~ 152 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQ 152 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHH
Confidence 56666677877753 56788999999987542 221 4689998887655444444
No 391
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=20.08 E-value=4.7e+02 Score=22.62 Aligned_cols=14 Identities=14% Similarity=0.423 Sum_probs=11.2
Q ss_pred CCCCcCEEEEcCCC
Q 028010 34 QLQNVSSLIIPGGE 47 (215)
Q Consensus 34 ~l~~~d~lil~GG~ 47 (215)
++.++|.+|++.|.
T Consensus 70 ~~~~adivIitag~ 83 (315)
T PRK00066 70 DCKDADLVVITAGA 83 (315)
T ss_pred HhCCCCEEEEecCC
Confidence 45679999998884
Done!