RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 028010
(215 letters)
>gnl|CDD|215446 PLN02832, PLN02832, glutamine amidotransferase subunit of pyridoxal
5'-phosphate synthase complex.
Length = 248
Score = 408 bits (1050), Expect = e-147
Identities = 167/215 (77%), Positives = 184/215 (85%), Gaps = 6/215 (2%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
M +GVLALQGSFNEHIAAL+RLGV+ VE+RKP+QL+ VS LIIPGGESTTMA+LAE HNL
Sbjct: 2 MAIGVLALQGSFNEHIAALRRLGVEAVEVRKPEQLEGVSGLIIPGGESTTMAKLAERHNL 61
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
FPALREFVK GKPVWGTCAGLIFLA +AVGQK GGQEL+GGLDCTVHRNFFGSQI SFE
Sbjct: 62 FPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFET 121
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
EL VP LA+ EGGPETFR VFIRAPA+L VGP V+VLA+YP+PS K LYSSST +
Sbjct: 122 ELPVPELAASEGGPETFRAVFIRAPAILSVGPGVEVLAEYPLPSEKALYSSST------D 175
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
A KVIVAV+QGNLL TAFHPELTADTRW+ F
Sbjct: 176 AEGRDKVIVAVKQGNLLATAFHPELTADTRWHSYF 210
>gnl|CDD|153220 cd01749, GATase1_PB, Glutamine Amidotransferase (GATase_I) involved
in pyridoxine biosynthesis. Glutamine Amidotransferase
(GATase_I) involved in pyridoxine biosynthesis.
Glutamine amidotransferase (GATase) activity involves
the removal of the ammonia group from a glutamate
molecule and its subsequent transfer to a specific
substrate, thus creating a new carbon-nitrogen group on
the substrate. This group contains proteins like
Bacillus subtilus YaaE and Plasmodium falciparum Pdx2
which are members of the triad glutamine
aminotransferase family and function in a pathway for
the biosynthesis of vitamin B6.
Length = 183
Score = 282 bits (725), Expect = 3e-98
Identities = 108/213 (50%), Positives = 133/213 (62%), Gaps = 31/213 (14%)
Query: 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
+GVLALQG F EHI AL+RLGV+ +E+R P+ L+ + LIIPGGESTT+ +L L
Sbjct: 1 IGVLALQGDFREHIRALERLGVEVIEVRTPEDLEGIDGLIIPGGESTTIGKLLRRTGLLD 60
Query: 63 ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
LREF++ GKPV+GTCAGLI LA + Q GGQ L+G LD TV RN FG Q+ SFEA+L
Sbjct: 61 PLREFIRAGKPVFGTCAGLILLAKEVEDQ--GGQPLLGLLDITVRRNAFGRQVDSFEADL 118
Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAM 182
+P L G F VFIRAP + +VGP V+VLA+Y
Sbjct: 119 DIPGL-----GLGPFPAVFIRAPVIEEVGPGVEVLAEYD--------------------- 152
Query: 183 PEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
IVAVRQGN+L T+FHPELT DTR + F
Sbjct: 153 ---GKIVAVRQGNVLATSFHPELTDDTRIHEYF 182
>gnl|CDD|237411 PRK13525, PRK13525, glutamine amidotransferase subunit PdxT;
Provisional.
Length = 189
Score = 252 bits (646), Expect = 4e-86
Identities = 102/211 (48%), Positives = 125/211 (59%), Gaps = 33/211 (15%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
M +GVLALQG+ EH+AAL+ LG + VE+R+P+ L + LI+PGGESTTM +L L
Sbjct: 2 MKIGVLALQGAVREHLAALEALGAEAVEVRRPEDLDEIDGLILPGGESTTMGKLLRDFGL 61
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
LREF+ G PV+GTCAG+I LA + G QE +G LD TV RN FG Q+ SFEA
Sbjct: 62 LEPLREFIASGLPVFGTCAGMILLAKEIEGY---EQEHLGLLDITVRRNAFGRQVDSFEA 118
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
EL + L G P F VFIRAP + +VGP V+VLA
Sbjct: 119 ELDIKGL----GEP--FPAVFIRAPYIEEVGPGVEVLATV-----------------GGR 155
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRW 211
IVAVRQGN+L T+FHPELT DTR
Sbjct: 156 -------IVAVRQGNILATSFHPELTDDTRV 179
>gnl|CDD|223388 COG0311, PDX2, Predicted glutamine amidotransferase involved in
pyridoxine biosynthesis [Coenzyme metabolism].
Length = 194
Score = 238 bits (609), Expect = 2e-80
Identities = 97/213 (45%), Positives = 125/213 (58%), Gaps = 31/213 (14%)
Query: 1 MVVGVLALQGSFNEHIAALKRLG-VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHN 59
M +GVLALQG+ EH+ AL++ G + VE+++P+ L+ V LIIPGGESTT+ RL + +
Sbjct: 1 MKIGVLALQGAVEEHLEALEKAGGAEVVEVKRPEDLEGVDGLIIPGGESTTIGRLLKRYG 60
Query: 60 LFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFE 119
L LREF+ G PV+GTCAGLI LA + + Q L+G LD TV RN FG Q+ SFE
Sbjct: 61 LLEPLREFIADGLPVFGTCAGLILLAKEILDGP--EQPLLGLLDVTVRRNAFGRQVDSFE 118
Query: 120 AELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEE 179
EL + G P F VFIRAP + +VG V+VLA
Sbjct: 119 TELDIEGF----GLPFPFPAVFIRAPVIEEVGDGVEVLATLD------------------ 156
Query: 180 NAMPEKKVIVAVRQGNLLGTAFHPELTADTRWY 212
IVAV+QGN+L T+FHPELT DTR +
Sbjct: 157 ------GRIVAVKQGNILATSFHPELTDDTRLH 183
>gnl|CDD|237412 PRK13527, PRK13527, glutamine amidotransferase subunit PdxT;
Provisional.
Length = 200
Score = 223 bits (572), Expect = 1e-74
Identities = 98/218 (44%), Positives = 122/218 (55%), Gaps = 38/218 (17%)
Query: 1 MVVGVLALQGSFNEHIAALKR----LGVKG--VEIRKPDQLQNVSSLIIPGGESTTMARL 54
M +GVLALQG EHI ALKR LG+ G VE+R+P L + +LIIPGGESTT+ RL
Sbjct: 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPGDLPDCDALIIPGGESTTIGRL 60
Query: 55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGG--QELVGGLDCTVHRNFFG 112
+ + ++E ++ G P+ GTCAGLI LA + ++ Q L+G +D TV RN FG
Sbjct: 61 MKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFG 120
Query: 113 SQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSS 172
Q SFEAE+ + G F VFIRAPA+ VG DV+VLA
Sbjct: 121 RQRDSFEAEIDL------SGLDGPFHAVFIRAPAITKVGGDVEVLAKLD----------- 163
Query: 173 TVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTR 210
IVAV QGN+L TAFHPELT DTR
Sbjct: 164 -------------DRIVAVEQGNVLATAFHPELTDDTR 188
>gnl|CDD|163512 TIGR03800, PLP_synth_Pdx2, pyridoxal 5'-phosphate synthase,
glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP)
is synthesized by the PdxA/PdxJ pathway in some species
(mostly within the gamma subdivision of the
proteobacteria) and by the Pdx1/Pdx2 pathway in most
other organisms. This family describes Pdx2, the
glutaminase subunit of the PLP synthase [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridoxine].
Length = 184
Score = 200 bits (510), Expect = 1e-65
Identities = 96/209 (45%), Positives = 130/209 (62%), Gaps = 32/209 (15%)
Query: 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
+GVLALQG+ EH AL+ LGV+GVE+++P+QL + LIIPGGESTT++RL + + +F
Sbjct: 1 KIGVLALQGAVREHARALEALGVEGVEVKRPEQLDEIDGLIIPGGESTTLSRLLDKYGMF 60
Query: 62 PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE 121
LR F+ G PV+GTCAGLI LA + +GQK + +G LD TV RN +G Q+ SFEAE
Sbjct: 61 EPLRNFILSGLPVFGTCAGLIMLAKEIIGQK---EGYLGLLDMTVERNAYGRQVDSFEAE 117
Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENA 181
+ + + G + GVFIRAP ++ VG V++LA N+
Sbjct: 118 VDIKGV-----GDDPITGVFIRAPKIVSVGNGVEILAKV---GNR--------------- 154
Query: 182 MPEKKVIVAVRQGNLLGTAFHPELTADTR 210
IVAVRQGN+L ++FHPELT D R
Sbjct: 155 ------IVAVRQGNILVSSFHPELTDDHR 177
>gnl|CDD|201639 pfam01174, SNO, SNO glutamine amidotransferase family. This family
and its amidotransferase domain was first described in.
It is predicted that members of this family are involved
in the pyridoxine biosynthetic pathway, based on the
proximity and co-regulation of the corresponding genes
and physical interaction between the members of
pfam01174 and pfam01680.
Length = 188
Score = 165 bits (418), Expect = 9e-52
Identities = 81/218 (37%), Positives = 111/218 (50%), Gaps = 44/218 (20%)
Query: 5 VLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPAL 64
VLALQG+ EH A+K+ G + +++P+ L +LIIPGGEST M+ LA+ + + L
Sbjct: 1 VLALQGAVEEHEEAIKKCGAENKTVKRPEDLAQCDALIIPGGESTAMSLLAKRYGFYEPL 60
Query: 65 REFVKMG-KPVWGTCAGLIFLANKAVGQKLGGQEL--VGGLDCTVHRNFFGSQIQSFEAE 121
EFV KP+WGTCAGLI L+ ++LG + + +G L TV RN FG Q+ SFE E
Sbjct: 61 YEFVHNPNKPIWGTCAGLILLS-----KQLGNELVKTLGLLKVTVKRNAFGRQVDSFEKE 115
Query: 122 LSVPALASQEGGPETFRGVFIRAPAVLDVGPD--VDVLADYPVPSNKVLYSSSTVEIQEE 179
L F GVFIRAP + ++ V VL +
Sbjct: 116 CDFKNLI------PKFPGVFIRAPVIEEILDPEVVVVLYELDGK---------------- 153
Query: 180 NAMPEKKVIVAVRQGNLLGTAFHPELTAD----TRWYI 213
IV +QGN+L T+FHPEL D W++
Sbjct: 154 --------IVVAKQGNILATSFHPELAEDDYRVHDWFV 183
>gnl|CDD|184113 PRK13526, PRK13526, glutamine amidotransferase subunit PdxT;
Provisional.
Length = 179
Score = 122 bits (307), Expect = 3e-35
Identities = 74/207 (35%), Positives = 102/207 (49%), Gaps = 41/207 (19%)
Query: 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
VGVLA+QG + +H K LGV+ ++ + ++ L+IPGGESTT+ L H +F
Sbjct: 5 VGVLAIQGGYQKHADMFKSLGVEVKLVKFNNDFDSIDRLVIPGGESTTLLNLLNKHQIFD 64
Query: 63 ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
L F KPV+GTCAG I L+ G+ + LD V RN +G Q+ SF A++
Sbjct: 65 KLYNFCSS-KPVFGTCAGSIILSK--------GEGYLNLLDLEVQRNAYGRQVDSFVADI 115
Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAM 182
S + GVFIRAP + VG VD+L+ Y
Sbjct: 116 SFND--------KNITGVFIRAPKFIVVGNQVDILSKY-------------------QNS 148
Query: 183 PEKKVIVAVRQGNLLGTAFHPELTADT 209
P V +RQ N+L ++FHPELT D
Sbjct: 149 P-----VLLRQANILVSSFHPELTQDP 170
>gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 199
Score = 52.6 bits (127), Expect = 1e-08
Identities = 49/194 (25%), Positives = 72/194 (37%), Gaps = 35/194 (18%)
Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVW 75
ALKRLGV+ V P+++ +I+PG G M L E L AL+E V+ +PV
Sbjct: 18 ALKRLGVEAVVSSDPEEIAGADKVILPGVGAFGQAMRSLRE-SGLDEALKEHVEKKQPVL 76
Query: 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE-LSVPAL----ASQ 130
G C G+ L +E G + ++ F +E L VP +
Sbjct: 77 GICLGMQLLFE-------SSEE--GNVKGL---GLIPGDVKRFRSEPLKVPQMGWNSVKP 124
Query: 131 EGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVA 190
F+G ++ G + Y VP +T E A
Sbjct: 125 LKESPLFKG--------IEEGSYFYFVHSYYVPCEDPEDVLATTEYGVPFC-------SA 169
Query: 191 VRQGNLLGTAFHPE 204
V + N+ FHPE
Sbjct: 170 VAKDNIYAVQFHPE 183
>gnl|CDD|153219 cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). IGPS incorporates ammonia derived from
glutamine into
N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to form
5'-(5-aminoimidazole-4-carboxamide) ribonucleotide
(AICAR) and imidazole glycerol phosphate (IGP). The
glutamine amidotransferase domain generates the ammonia
nucleophile which is channeled from the glutaminase
active site to the PRFAR active site. IGPS belong to the
triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 198
Score = 49.4 bits (119), Expect = 1e-07
Identities = 50/198 (25%), Positives = 72/198 (36%), Gaps = 41/198 (20%)
Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVW 75
AL+RLG + + P+++ + LI+PG G MA L E L AL+E + GKP
Sbjct: 17 ALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANLRE-RGLIEALKEAIASGKPFL 75
Query: 76 GTCAGLIFLANKAVGQKLGGQE--LVGGLDCTVHRNFFGSQIQSF--EAELSVP-----A 126
G C G+ L +E GL ++ F L VP
Sbjct: 76 GICLGMQLLFE-------SSEEGGGTKGLG------LIPGKVVRFPASEGLKVPHMGWNQ 122
Query: 127 LASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKK 186
L + P + G + Y P + Y +T + K
Sbjct: 123 LEITKESPLFKG---------IPDGSYFYFVHSYYAPPDDPDYILATTDY-------GGK 166
Query: 187 VIVAVRQGNLLGTAFHPE 204
AV + N+ GT FHPE
Sbjct: 167 FPAAVEKDNIFGTQFHPE 184
>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group contains proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4
beta-galactosidase middle domain and peptidase E. The
majority of proteins in this group have a reactive Cys
found in the sharp turn between a beta strand and an
alpha helix termed the nucleophile elbow. For Class I
glutamine amidotransferases proteins which transfer
ammonia from the amide side chain of glutamine to an
acceptor substrate, this Cys forms a Cys-His-Glu
catalytic triad in the active site. Glutamine
amidotransferases activity can be found in a range of
biosynthetic enzymes included in this cd: glutamine
amidotransferase, formylglycinamide ribonucleotide, GMP
synthetase, anthranilate synthase component II,
glutamine-dependent carbamoyl phosphate synthase
(CPSase), cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. Peptidase E is believed to
be a serine peptidase having a Ser-His-Glu catalytic
triad which differs from the Cys-His-Glu catalytic
triad of typical GATase1 domains, by having a Ser in
place of the reactive Cys at the nucleophile elbow. The
E. coli HP-II C-terminal domain, S. meliloti Rm1021
ThuA and the A4 beta-galactosidase middle domain lack
the catalytic triad typical GATaseI domains.
GATase1-like domains can occur either as single
polypeptides, as in Class I glutamine
amidotransferases, or as domains in a much larger
multifunctional synthase protein, such as CPSase.
Peptidase E has a circular permutation in the common
core of a typical GTAse1 domain.
Length = 92
Score = 46.4 bits (110), Expect = 4e-07
Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 3 VGVLALQGSFNE----HIAALKRLGVK-------GVEIRKPDQLQNVSSLIIPGGESTTM 51
V VL GS + AL+ G + G + L + LI+PGG T
Sbjct: 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60
Query: 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL 84
LA L LRE GKPV G C G L
Sbjct: 61 D-LAWDEALLALLREAAAAGKPVLGICLGAQLL 92
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase
(GATase1)-like domain. Type 1 glutamine
amidotransferase (GATase1)-like domain. This group
includes proteins similar to Class I glutamine
amidotransferases, the intracellular PH1704 from
Pyrococcus horikoshii, the C-terminal of the large
catalase: Escherichia coli HP-II, Sinorhizobium
meliloti Rm1021 ThuA. and, the A4 beta-galactosidase
middle domain. The majority of proteins in this group
have a reactive Cys found in the sharp turn between a
beta strand and an alpha helix termed the nucleophile
elbow. For Class I glutamine amidotransferases
proteins which transfer ammonia from the amide side
chain of glutamine to an acceptor substrate, this Cys
forms a Cys-His-Glu catalytic triad in the active site.
Glutamine amidotransferases activity can be found in a
range of biosynthetic enzymes included in this cd:
glutamine amidotransferase, formylglycinamide
ribonucleotide, GMP synthetase, anthranilate synthase
component II, glutamine-dependent carbamoyl phosphate
synthase, cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as
CPSase.
Length = 115
Score = 46.4 bits (110), Expect = 6e-07
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 3 VGVLALQGSFNE----HIAALKRLGVK-------GVEIRKPDQLQNVSSLIIPGGESTTM 51
V VL G + AL+ G + G + L + LI+PGG T
Sbjct: 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60
Query: 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL 84
LA L LRE GKP+ G C G L
Sbjct: 61 D-LARDEALLALLREAAAAGKPILGICLGAQLL 92
>gnl|CDD|153224 cd03130, GATase1_CobB, Type 1 glutamine amidotransferase (GATase1)
domain found in Cobyrinic Acid a,c-Diamide Synthase.
Type 1 glutamine amidotransferase (GATase1) domain found
in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a
role in cobalamin biosythesis catalyzing the conversion
of cobyrinic acid to cobyrinic acid a,c-diamide. CobB
belongs to the triad family of amidotransferases. Two
of the three residues of the catalytic triad that are
involved in glutamine binding, hydrolysis and transfer
of the resulting ammonia to the acceptor substrate in
other triad aminodotransferases are conserved in CobB.
Length = 198
Score = 47.6 bits (114), Expect = 7e-07
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 14 EHIAALKRLGVKGVEIR--KPDQLQNVSSLIIPGG--ESTTMARLAEYHNLFPALREFVK 69
E++ L+ G + V K ++L + L + GG E L+ ++ ++R F +
Sbjct: 15 ENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPE-LFAEELSANQSMRESIRAFAE 73
Query: 70 MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTV 106
G P++ C GL++L ++ + G L
Sbjct: 74 SGGPIYAECGGLMYLGESLDDEEGQSYPMAGVLPGDA 110
>gnl|CDD|237288 PRK13141, hisH, imidazole glycerol phosphate synthase subunit
HisH; Provisional.
Length = 205
Score = 44.7 bits (107), Expect = 8e-06
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG----GESTTMARLAEYHNLFPALREFVKMGKP 73
AL+RLG + V P+++ +I+PG + MA L L ++E V GKP
Sbjct: 18 ALERLGAEAVITSDPEEILAADGVILPGVGAFPD--AMANL-RERGLDEVIKEAVASGKP 74
Query: 74 VWGTCAGL 81
+ G C G+
Sbjct: 75 LLGICLGM 82
Score = 28.6 bits (65), Expect = 2.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 186 KVIVAVRQGNLLGTAFHPE 204
+ AV + N+ G FHPE
Sbjct: 167 EFPAAVGKDNVFGAQFHPE 185
>gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and
metabolism].
Length = 204
Score = 43.7 bits (104), Expect = 1e-05
Identities = 58/205 (28%), Positives = 80/205 (39%), Gaps = 56/205 (27%)
Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVW 75
AL+RLG + V R P+++ LI+PG G MA L E L A++E V+ GKP
Sbjct: 20 ALERLGAEVVVSRDPEEILKADKLILPGVGAFGAAMANLRER-GLIEAIKEAVESGKPFL 78
Query: 76 GTCAGLIFLANKAVGQKLGGQE--LVGGLDCTVHRNFFGSQIQSFEAE-LSVP-----AL 127
G C G+ L + +E V GL ++ F AE L VP +
Sbjct: 79 GICLGMQLLFER-------SEEGGGVKGL------GLIPGKVVRFPAEDLKVPHMGWNQV 125
Query: 128 ASQEGGPETFRGV-------FIRAPAVLDVGPDVDVL-ADYPVPSNKVLYSSSTVEIQEE 179
G P F+G+ F+ + V P+ V DY P
Sbjct: 126 EFVRGHP-LFKGIPDGAYFYFVHSYYVPPGNPETVVATTDYGEP---------------- 168
Query: 180 NAMPEKKVIVAVRQGNLLGTAFHPE 204
AV + N+ GT FHPE
Sbjct: 169 -------FPAAVAKDNVFGTQFHPE 186
>gnl|CDD|219513 pfam07685, GATase_3, CobB/CobQ-like glutamine amidotransferase
domain.
Length = 157
Score = 42.6 bits (101), Expect = 2e-05
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 31 KPDQLQNVSSLIIPGGESTTMARLAEYHN-LFPALREFVKMGKPVWGTCAGLIFLANKAV 89
+ +I+PGG+ T ++ L ALRE + G P+ G C G L +
Sbjct: 1 DDALPGDADLVILPGGKPTIQDLALLRNSGLDEALREHAEAGGPILGICGGYQMLGETII 60
Query: 90 GQKLGGQ-----ELVGGLDCTVH 107
G E +G LD
Sbjct: 61 DGIEGTAGGERVEGLGLLDIETV 83
>gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF.
Length = 538
Score = 43.9 bits (104), Expect = 3e-05
Identities = 51/203 (25%), Positives = 78/203 (38%), Gaps = 40/203 (19%)
Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWG 76
A++ LG +++ P+ + N LI PG G + + + ALRE+++ +P G
Sbjct: 25 AIRHLGFTIKDVQTPEDILNADRLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLG 84
Query: 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVP-----ALASQE 131
C GL L ++ G E +G + V R F S L VP AL +
Sbjct: 85 ICLGLQLLFES--SEENGPVEGLGVIPGVVGR--FDSS-----NGLRVPHIGWNALQITK 135
Query: 132 GGPETFRGVFIRAPAVLDVGPDVDV--LADY---PVPSNKVLYSSSTVEIQEENAMPEKK 186
+LD V + Y P NK + +T E
Sbjct: 136 DSE------------LLDGVGGRHVYFVHSYRATPSDENKD-WVLATCNYGGE------- 175
Query: 187 VIVAVRQGNLLGTAFHPELTADT 209
I +VR+GN+ FHPE + T
Sbjct: 176 FIASVRKGNVHAVQFHPEKSGAT 198
>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine
synthase I. In some species,
phosphoribosylformylglycinamidine synthase is composed
of a single polypeptide chain. This model describes the
PurQ protein of Bacillus subtilis (where PurL, PurQ,
and PurS are required for
phosphoribosylformylglycinamidine synthase activity)
and functionally equivalent proteins from other
bacteria and archaea [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 227
Score = 40.4 bits (95), Expect = 2e-04
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 1 MVVGVLALQGSFNEH--IAALKRLGVKGVEIRKPD-QLQNVSSLIIPGGES-------TT 50
M V V+ G+ + + AL+ LGV + D L + +++PGG S
Sbjct: 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAGA 60
Query: 51 MARLAEYHNLFPALREFVKMGKPVWGTCAG 80
+A + + +REF + G PV G C G
Sbjct: 61 IAAASP---IMQEVREFAEKGVPVLGICNG 87
>gnl|CDD|234913 PRK01175, PRK01175, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 261
Score = 40.5 bits (95), Expect = 3e-04
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 19/97 (19%)
Query: 1 MVVGVLALQGSFNEH--IAALKRLGVKG--VEI----RKPDQLQNVSSLIIPGGESTT-- 50
+ V VL ++G+ E + A +RLGV+ V I + + + L+IPGG S
Sbjct: 4 IRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDY 63
Query: 51 -------MARLAEYHNLFPALREFVKMGKPVWGTCAG 80
ARL L + EF+ G P+ G C G
Sbjct: 64 IRAGAIFAARLKAV--LRKDIEEFIDEGYPIIGICNG 98
>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase
(GATase1)-like domain found in a subgroup of proteins
similar to PfpI from Pyrococcus furiosus. Type 1
glutamine amidotransferase (GATase1)-like domain found
in a subgroup of proteins similar to PfpI from
Pyrococcus furiosus. PfpI is an ATP-independent
intracellular proteases which may hydrolyze small
peptides to provide a nutritional source. Only Cys of
the catalytic triad typical of GATase1 domains is
conserved in this group. This Cys residue is found in
the sharp turn between a beta strand and an alpha helix
termed the nucleophile elbow.
Length = 170
Score = 39.5 bits (93), Expect = 3e-04
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV 89
+ LI+PGG+S E +L +R+ +K GKPV C + LA +
Sbjct: 60 DYDLLILPGGDSWDNP---EAPDLAGLVRQALKQGKPVAAICGATLALARAGL 109
>gnl|CDD|233601 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase,
glutamine amidotransferase subunit. This model
represents the glutamine amidotransferase subunit (or
domain, in eukaryotic systems) of imidazole glycerol
phosphate synthase. This subunit catalyzes step 5 of
histidine biosynthesis from PRPP. The other subunit, the
cyclase, catalyzes step 6 [Amino acid biosynthesis,
Histidine family].
Length = 196
Score = 39.6 bits (93), Expect = 4e-04
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 37/199 (18%)
Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEY-HNLFPALREFVKMGKPV 74
ALKR+G + V ++ + + LI+PG G MARL E +LF L V++GKPV
Sbjct: 17 ALKRVGAEPVVVKDSKEAELADKLILPGVGAFGAAMARLRENGLDLFVELV--VRLGKPV 74
Query: 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGP 134
G C G+ L + ++ GG +G + EA VP + G
Sbjct: 75 LGICLGMQLLFER--SEEGGGVPGLG---------LIKGNVVKLEAR-KVPHM----GWN 118
Query: 135 ETFRGVFIRAPAVL---DVGPDVDVLADYPVP-SNKVLYSSSTVEIQEENAMPEKKVIVA 190
E ++ +L D G + Y + + + + K A
Sbjct: 119 EVH---PVKESPLLNGIDEGAYFYFVHSYYAVCEEEAVLAYADYGE---------KFPAA 166
Query: 191 VRQGNLLGTAFHPELTADT 209
V++GN+ GT FHPE + T
Sbjct: 167 VQKGNIFGTQFHPEKSGKT 185
>gnl|CDD|234896 PRK01077, PRK01077, cobyrinic acid a,c-diamide synthase; Validated.
Length = 451
Score = 39.7 bits (94), Expect = 6e-04
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 23/138 (16%)
Query: 14 EHIAALKRLGVKGVEIR-----KPDQLQNVSSLIIPGG--ESTTM--ARLAEYHNLFPAL 64
E++ L+ G E+ + L + L + GG E + A LA ++ ++
Sbjct: 262 ENLELLRAAGA---ELVFFSPLADEALPDCDGLYLGGGYPE---LFAAELAANTSMRASI 315
Query: 65 REFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSF---EAE 121
R GKP++ C GL++L +VG L ++Q+ EAE
Sbjct: 316 RAAAAAGKPIYAECGGLMYLGESLEDADGERHPMVGLLPGEAS---MTKRLQALGYREAE 372
Query: 122 LSVPALASQEGGPETFRG 139
L + G E RG
Sbjct: 373 ALEDTLLGKAG--ERLRG 388
>gnl|CDD|224710 COG1797, CobB, Cobyrinic acid a,c-diamide synthase [Coenzyme
metabolism].
Length = 451
Score = 39.5 bits (93), Expect = 7e-04
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 6 LALQGSFN----EHIAALKRLGVKGVE---IRKPDQLQNVSSLIIPGGESTTMA-RLAEY 57
+A +FN E++ L+ G + V + + +V ++ + GG A L+
Sbjct: 250 VARDAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSAN 309
Query: 58 HNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQS 117
++ A++ F GKP++ C GL++L E+VG L + ++Q+
Sbjct: 310 ESMRRAIKAFAAAGKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGST---RMTKRLQA 366
Query: 118 F---EAELSVPALASQEGGPETFRG 139
EAE L + G E RG
Sbjct: 367 LGYREAEAVDDTLLLRAG--EKIRG 389
>gnl|CDD|171876 PRK13152, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 201
Score = 37.5 bits (87), Expect = 0.002
Identities = 48/208 (23%), Positives = 77/208 (37%), Gaps = 37/208 (17%)
Query: 10 GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREF 67
G+ N A +++G + P LQ L++PG S M L E AL+E
Sbjct: 10 GNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLPGVGSFKEAMKNLKELG-FIEALKEQ 68
Query: 68 VKMGK-PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA--ELSV 124
V + K P+ G C G+ + G + G E +G F ++ FE L +
Sbjct: 69 VLVQKKPILGICLGMQLFLER--GYEGGVCEGLG---------FIEGEVVKFEEDLNLKI 117
Query: 125 PALASQE----GGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
P + E ++G + D Y V S Y E
Sbjct: 118 PHMGWNELEILKQSPLYQG--------IPEKSDF-----YFVHS---FYVKCKDEFVSAK 161
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTAD 208
A K + ++++ N+ T FHPE + +
Sbjct: 162 AQYGHKFVASLQKDNIFATQFHPEKSQN 189
>gnl|CDD|153221 cd01750, GATase1_CobQ, Type 1 glutamine amidotransferase
(GATase1) domain found in Cobyric Acid Synthase (CobQ).
Type 1 glutamine amidotransferase (GATase1) domain
found in Cobyric Acid Synthase (CobQ). CobQ plays a
role in cobalamin biosythesis. CobQ catalyses
amidations at positions B, D, E, and G on
adenosylcobyrinic A,C-diamide in the biosynthesis of
cobalamin. CobQ belongs to the triad family of
amidotransferases. Two of the three residues of the
catalytic triad that are involved in glutamine binding,
hydrolysis and transfer of the resulting ammonia to the
acceptor substrate in other triad aminodotransferases
are conserved in CobQ.
Length = 194
Score = 35.3 bits (82), Expect = 0.010
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 29 IRKPDQLQNVSSLIIPGGESTTMARLA--EYHNLFPALREFVKMGKPVWGTCAGL 81
+ P+ L + +I+PG + T LA L A++ + + G PV G C G
Sbjct: 29 VEVPEGLGDADLIILPGSKDTI-QDLAWLRKRGLAEAIKNYARAGGPVLGICGGY 82
>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family. The family includes the
protease PfpI. This domain is also found in
transcriptional regulators. This N-terminal region of
the full-length AdpA proteins is necessary for
dimerisation of the molecule.
Length = 142
Score = 34.6 bits (80), Expect = 0.013
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN 86
L+IPGG + L + L ++EF + GKP+ C G + LA
Sbjct: 39 LVIPGGHAG-AEDLRDDEKLVKFVKEFYESGKPIAAICHGPVVLAA 83
>gnl|CDD|223125 COG0047, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
glutamine amidotransferase domain [Nucleotide transport
and metabolism].
Length = 231
Score = 34.5 bits (80), Expect = 0.026
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 1 MVVGVLALQGSFNEHI---AALKRLGVKGVEIRKPDQL--QNVSSLIIPGGEST------ 49
V VL G+ N AA +R G + ++ D L ++ +++PGG S
Sbjct: 3 PKVAVLRFPGT-NCDYDMAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRA 61
Query: 50 -TMARLAEYHNLFPALREFVKMGKPVWGTCAG 80
+A +A + +REF + GKPV G C G
Sbjct: 62 GAIAAIA---PVMDEVREFAEKGKPVLGICNG 90
>gnl|CDD|235140 PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 219
Score = 33.9 bits (79), Expect = 0.034
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 1 MVVGVLALQGSFNEH--IAALKR-LGVKGVEI-RKPDQLQNVSSLIIPGGES-------T 49
M V V+ GS + AL+ LG + + K L V ++++PGG S
Sbjct: 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCG 60
Query: 50 TMARLAEYHNLFPALREFVKMGKPVWGTCAG 80
+A + + A++EF + GKPV G C G
Sbjct: 61 AIAAFS---PIMKAVKEFAEKGKPVLGICNG 88
>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 188
Score = 33.4 bits (77), Expect = 0.050
Identities = 48/205 (23%), Positives = 66/205 (32%), Gaps = 49/205 (23%)
Query: 19 LKRLGVKGVEIR--------KPDQLQNVSSLIIPGGESTTMARLAEY-HNLFPALREFVK 69
L+ G + +EI L + L+I GG + + L +R+ +
Sbjct: 20 LREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALA 79
Query: 70 MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL--SVPAL 127
GKPV G C LG Q L L V RN G +I F L + A
Sbjct: 80 AGKPVLGIC--------------LGHQLLARALGGKVGRNPKGWEIGWFPVTLTEAGKAD 125
Query: 128 ASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKV 187
G P+ F V+++ P +LA SS Q
Sbjct: 126 PLFAGLPDEFPVFHWHGDTVVELPPGAVLLA-----------SSEACPNQ---------- 164
Query: 188 IVAVR-QGNLLGTAFHPELTADTRW 211
A R LG FHPE +
Sbjct: 165 --AFRYGDRALGLQFHPEERLLRNF 187
>gnl|CDD|129413 TIGR00313, cobQ, cobyric acid synthase CobQ. [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 475
Score = 33.6 bits (77), Expect = 0.069
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 33 DQLQNVSSLIIPGGESTTMARLA-EYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV-- 89
D L ++IIPG +ST A + + +F K G V G C G L + +
Sbjct: 280 DSLTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKELIDK 339
Query: 90 GQKLGGQELVGGL---DCTVH 107
+K + GL D +
Sbjct: 340 EKKESDVGDIEGLGLLDAKTY 360
>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General
function prediction only].
Length = 188
Score = 32.1 bits (73), Expect = 0.11
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVG 100
L+IPGG+ L +L +R+F GKPV C G LA A G L G++
Sbjct: 70 LVIPGGDHGPEY-LRPDPDLLAFVRDFYANGKPVAAICHGPAVLA--AAGLLLKGRKATA 126
Query: 101 GLDC 104
D
Sbjct: 127 FPDI 130
>gnl|CDD|214389 CHL00188, hisH, imidazole glycerol phosphate synthase subunit
hisH; Provisional.
Length = 210
Score = 32.2 bits (73), Expect = 0.12
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVW 75
A+++ G + I +L V +L++PG S M +L E L +++++ G P
Sbjct: 20 AIQQAGQQPCIINSESELAQVHALVLPGVGSFDLAMKKL-EKKGLITPIKKWIAEGNPFI 78
Query: 76 GTCAGLIFL 84
G C GL L
Sbjct: 79 GICLGLHLL 87
>gnl|CDD|234838 PRK00784, PRK00784, cobyric acid synthase; Provisional.
Length = 488
Score = 32.0 bits (74), Expect = 0.21
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 26 GVEIR---KPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWGTCAG 80
GV++R + L + +I+PG ++T +A L E A+R + G PV G C G
Sbjct: 276 GVDVRYVRPGEPLPDADLVILPGSKNTIADLAWLRE-SGWDEAIRAHARRGGPVLGICGG 334
Query: 81 L 81
Sbjct: 335 Y 335
>gnl|CDD|153211 cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotransferase
(GATase1)-like domain found in Formylglycinamide
ribonucleotide amidotransferase. Type 1 glutamine
amidotransferase (GATase1)-like domain found in
Formylglycinamide ribonucleotide amidotransferase
(FGAR-AT). FGAR-AT catalyzes the ATP-dependent
conversion of formylglycinamide ribonucleotide (FGAR)
and glutamine to formylglycinamidine ribonucleotide
(FGAM), ADP, Pi, and glutamate in the fourth step of
the purine biosynthetic pathway. FGAR-AT is a glutamine
amidotransferase. Glutamine amidotransferase activity
catalyses the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. FGAR-AT
belongs to the triad family of amidotransferases having
a conserved Cys-His-Glu catalytic triad in the
glutaminase active site.
Length = 238
Score = 31.0 bits (71), Expect = 0.30
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 3 VGVLALQGSFNEH--IAALKRLGVKGVE------IRKPDQLQNVSSLIIPGG-------E 47
V VL GS + A + G + + + L + +++PGG
Sbjct: 1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLR 60
Query: 48 STTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80
+ +A + L ++EF + G V G C G
Sbjct: 61 AGAIAAASPL--LMEEVKEFAERGGLVLGICNG 91
>gnl|CDD|153243 cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase
(GATase1)-like domain found in a subgroup of proteins
similar to PfpI from Pyrococcus furiosus. Type 1
glutamine amidotransferase (GATase1)-like domain found
in a subgroup of proteins similar to PfpI from
Pyrococcus furiosus. PfpI is an ATP-independent
intracellular proteases which may hydrolyze small
peptides to provide a nutritional source. Only Cys of
the catalytic triad typical of GATase1 domains is
conserved in this group. This Cys residue is found in
the sharp turn between a beta strand and an alpha helix
termed the nucleophile elbow.
Length = 180
Score = 30.7 bits (70), Expect = 0.32
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVG 100
L+IPGG + RL E + +R F + KPV C G LA A G ++
Sbjct: 80 LVIPGGRAPEYLRLDE--KVLAIVRHFAEANKPVAAICHGPQILA--AAG-------VLK 128
Query: 101 GLDCT 105
G CT
Sbjct: 129 GRRCT 133
>gnl|CDD|232946 TIGR00379, cobB, cobyrinic acid a,c-diamide synthase. This model
describes cobyrinic acid a,c-diamide synthase, the cobB
(cbiA in Salmonella) protein of cobalamin biosynthesis.
It is responsible for the amidation of carboxylic groups
at positions A and C of either cobyrinic acid or
hydrogenobrynic acid. NH(2) groups are provided by
glutamine and one molecule of ATP hydrogenolyzed for
each amidation [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 449
Score = 30.9 bits (70), Expect = 0.45
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 34 QLQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQK 92
+L +V ++ I GG A L++ L +++ F+ G P++G C GL++L+ +++
Sbjct: 283 ELPDVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLS-QSLDNF 341
Query: 93 LGGQELVGGLDCTV 106
G +VG L
Sbjct: 342 EGQIFMVGMLPTAA 355
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase;
Validated.
Length = 476
Score = 30.4 bits (69), Expect = 0.65
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 41 LIIPGGESTTMARLAEYHNLFPAL-REFVKMGKPVWGTCAGLIFLANKA-VGQK 92
LIIPGG L E +L L +E + + G C+G L+ K +G+K
Sbjct: 40 LIIPGGS------LVESGSLTDELKKEILNFDGYIIGICSGFQILSEKIDIGRK 87
>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family. The member
of this family from Pyrococcus horikoshii has been
solved to 2 Angstrom resolution. It is an
ATP-independent intracellular protease that crystallizes
as a hexameric ring. Cys-101 is proposed as the active
site residue in a catalytic triad with the adjacent
His-102 and a Glu residue from an adjacent monomer. A
member of this family from Bacillus subtilis, GSP18, has
been shown to be expressed in response to several forms
of stress. A role in the degradation of small peptides
has been suggested. A closely related family consists of
the thiamine biosynthesis protein ThiJ and its homologs
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 166
Score = 29.7 bits (67), Expect = 0.83
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV--GQKL 93
L+IPGG + RL +REFV+ GKPV C G L + V G+KL
Sbjct: 64 LVIPGGRAPEYLRLNN--KAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKL 116
>gnl|CDD|225974 COG3442, COG3442, Predicted glutamine amidotransferase [General
function prediction only].
Length = 250
Score = 29.7 bits (67), Expect = 0.89
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 41 LIIPGGESTTMARLAEYHNL--FPALREFVKMGKPVWGTCAGLIFLANK---AVGQKLGG 95
L GG +A L L++ ++ GKPV C G L A G ++ G
Sbjct: 55 LYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQYYETASGTRIDG 114
Query: 96 QELVGGLDCT 105
+G LD
Sbjct: 115 ---LGILDHY 121
>gnl|CDD|161802 TIGR00282, TIGR00282, metallophosphoesterase, MG_246/BB_0505
family. A member of this family from Mycoplasma
Pneumoniae has been crystallized and described as a
novel phosphatase [Unknown function, Enzymes of unknown
specificity].
Length = 266
Score = 29.0 bits (65), Expect = 1.8
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 41 LIIPGGESTTMAR---LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87
L+I GE+TT + L Y L + ++ MG W L + N+
Sbjct: 33 LVIANGENTTHGKGLTLKIYEFLKQSGVNYITMGNHTWFQKLILDVVINQ 82
>gnl|CDD|235771 PRK06289, PRK06289, acetyl-CoA acetyltransferase; Provisional.
Length = 403
Score = 28.9 bits (65), Expect = 2.0
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 43 IPGGESTTMAR--LAEYHNLFPALREFVKMGKPVWGTCA---GLIFLANKAVGQKLGGQE 97
+ GG + AR E + RE V G A ++ + N G+ GQ
Sbjct: 7 VLGGYQSDFARNWTKEGRDFADLTREVVDGTLAAAGVDADDIEVVHVGN-FFGELFAGQG 65
Query: 98 LVGGLDCTVHRNFFGSQIQSFEAEL---SVPALAS 129
+G + TVH +G EA SV LA+
Sbjct: 66 HLGAMPATVHPALWGVPASRHEAACASGSVATLAA 100
>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a
Type 1 glutamine amidotransferase (GATase1)-like domain.
A subgroup of AraC transcriptional regulators having a
Type 1 glutamine amidotransferase (GATase1)-like domain.
AraC regulators are defined by a AraC-type
helix-turn-helix DNA binding domain at their C-terminal.
AraC family transcriptional regulators are widespread
among bacteria and are involved in regulating diverse
and important biological functions, including carbon
metabolism, stress responses and virulence in different
microorganisms. The catalytic triad typical of GATase1
domains is not conserved in this GATase1-like domain.
However, in common with typical GATase1domains a
reactive cys residue is found in the sharp turn between
a beta strand and an alpha helix termed the nucleophile
elbow.
Length = 195
Score = 28.4 bits (64), Expect = 2.0
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 32 PDQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85
+ +I+PG G+ + LA+ L LR G V C G+ LA
Sbjct: 64 LADVPAPDLVIVPGLGGDPDELL-LADNPALIAWLRRQHANGATVAAACTGVFLLA 118
>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I.
Length = 186
Score = 28.4 bits (64), Expect = 2.1
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 10 GSFNEHIA-ALKRLGVKGVEIRKPDQLQ------NVSSLIIPGGESTTMARLAEYHNLFP 62
SF ++A AL+ LGV+ VE+ D N +II G +
Sbjct: 7 DSFTYNLARALRELGVE-VEVVPNDTPAEEILELNPDGIIISPGPGSP----GALGGAIE 61
Query: 63 ALREFVKMGKPVWGTCAG--LIFLA 85
A++E + P+ G C G L+ LA
Sbjct: 62 AIKELRENKIPILGICLGHQLLALA 86
>gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit
HisH; Provisional.
Length = 196
Score = 28.3 bits (64), Expect = 2.1
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIP--GGESTTMARLAEYHNLFPALREFVKMGKPVW 75
A++RLG + V R PD + L +P G M +L E L ++ +PV
Sbjct: 19 AIERLGYEPVVSRDPDVILAADKLFLPGVGTAQAAMDQLRER-ELIDLIKA---CTQPVL 74
Query: 76 GTCAGLIFLA 85
G C G+ L
Sbjct: 75 GICLGMQLLG 84
>gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II;
Provisional.
Length = 214
Score = 28.5 bits (64), Expect = 2.3
Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 22/88 (25%)
Query: 135 ETFRGVFIRAPAVL----------DVGPDVDVLADYPVPSNKVLYSSSTVEIQ------E 178
F RAP +L VG VLA P P Y S T+ + E
Sbjct: 91 VAFGATVDRAPELLHGKTSSVHHTGVG----VLAGLPDPFTATRYHSLTILPETLPAELE 146
Query: 179 ENAMPEKKVIVAVRQGNLL--GTAFHPE 204
A + VI+AVR L G FHPE
Sbjct: 147 VTARTDSGVIMAVRHRELPIHGVQFHPE 174
>gnl|CDD|237290 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 209
Score = 27.8 bits (63), Expect = 3.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 190 AVRQGNLLGTAFHPE 204
AV + NL T FHPE
Sbjct: 177 AVARDNLFATQFHPE 191
>gnl|CDD|217440 pfam03231, Bunya_NS-S_2, Bunyavirus non-structural protein NS-S.
This family represents the Bunyavirus NS-S family.
Bunyavirus has three genomic segments: small (S),
middle-sized (M), and large (L). The S segment encodes
the nucleocapsid and a non-structural protein. The M
segment codes for two glycoproteins, G1 and G2, and
another non-structural protein (NSm). The L segment
codes for an RNA polymerase.
Length = 444
Score = 28.2 bits (63), Expect = 3.7
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 162 VPSNKVLYSSSTVEIQ---EENAMPEKKVIVAVRQ 193
P+N++L++S+ I+ ++ +Q
Sbjct: 212 QPTNRLLHTSTVKAIEIASVSELASNTTTTLSAKQ 246
>gnl|CDD|223867 COG0796, MurI, Glutamate racemase [Cell envelope biogenesis, outer
membrane].
Length = 269
Score = 27.9 bits (63), Expect = 3.7
Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 16/107 (14%)
Query: 62 PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE 121
LRE + PV G AV G+ V TV N + I F +
Sbjct: 84 EDLREKFDI--PVVGVIPA----IKPAVALTRNGRIGVIATPATVKSNAYRDLIARFAPD 137
Query: 122 LSVPALASQE----------GGPETFRGVFIRAPAVLDVGPDVDVLA 158
V +LA E GGP + P + + GPD VL
Sbjct: 138 CEVESLACPELVPLVEEGIRGGPVALEVLKEYLPPLQEAGPDTLVLG 184
>gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase.
This family contains pyridoxal phosphate-binding class
II aminotransferases (see pfam00222) closely related to,
yet distinct from, histidinol-phosphate aminotransferase
(HisC). It is found in cobalamin biosynthesis operons in
Salmonella typhimurium and Bacillus halodurans (each of
which also has HisC) and has been shown to have
L-threonine-O-3-phosphate decarboxylase activity in
Salmonella. Although the gene symbol cobD was assigned
in Salmonella, cobD in other contexts refers to a
different cobalamin biosynthesis enzyme, modeled by
pfam03186 and called cbiB in Salmonella [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 330
Score = 27.9 bits (63), Expect = 4.0
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSS----LII-----PGGESTTMAR 53
V VLA +++E+ A + G + VE+ D+L L++ P G
Sbjct: 89 VLVLAP--TYSEYARAWRAAGHEVVELPDLDRLPAALEEADLLVVCNPNNPTGRLIPPET 146
Query: 54 LAEYHNLFPA 63
L A
Sbjct: 147 LLALAARLRA 156
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 28.0 bits (63), Expect = 4.1
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 115 IQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTV 174
Q+ +++V S+EG F + I APAV + D D P+P+ +L V
Sbjct: 480 AQAMGGDITV---TSEEGKGSCFT-LTIHAPAVAEEVEDAFDEDDMPLPALNILL----V 531
Query: 175 EIQEEN-----AMPEK---KVIVAV 191
E E N ++ EK V VA+
Sbjct: 532 EDIELNVIVARSVLEKLGNSVDVAM 556
>gnl|CDD|237289 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 200
Score = 27.5 bits (62), Expect = 4.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 190 AVRQGNLLGTAFHPE 204
AV N+ GT FHPE
Sbjct: 167 AVCNDNVFGTQFHPE 181
>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain
[Nucleotide transport and metabolism].
Length = 198
Score = 27.6 bits (62), Expect = 4.4
Identities = 50/218 (22%), Positives = 69/218 (31%), Gaps = 47/218 (21%)
Query: 1 MVVGVLALQGSFNEHIA-ALKRLGVKGVEIRKPD------QLQNVSSLIIPGGESTTMAR 53
+ +L G + IA L+ LG EI L + +II GG +
Sbjct: 2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDE 61
Query: 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN-FFG 112
+++ GKPV G C G LA + LGG+ V R
Sbjct: 62 DPWLPREKDLIKDAGVPGKPVLGICLGHQLLA-----KALGGK---------VERGPKRE 107
Query: 113 SQIQSFEAELSVPALASQEGGPETFRGVFI-RAPAVLDVGPDVDVLADYPVPSNKVLYSS 171
E L G P+ F VF+ V+++ VLA SS
Sbjct: 108 IGWTPVELTEGDDPLF--AGLPDLFTTVFMSHGDTVVELPEGAVVLA-----------SS 154
Query: 172 STVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT 209
T Q A G FHPE+T +
Sbjct: 155 ETCPNQ---AF--------RYGKRAYGVQFHPEVTHEY 181
>gnl|CDD|219535 pfam07722, Peptidase_C26, Peptidase C26. These peptidases have
gamma-glutamyl hydrolase activity; that is they catalyze
the cleavage of the gamma-glutamyl bond in
poly-gamma-glutamyl substrates. They are structurally
related to pfam00117, but contain extensions in four
loops and at the C terminus.
Length = 219
Score = 27.2 bits (61), Expect = 5.3
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 33 DQLQNVSSLIIPGGESTTMARLA--------EYHNL------FPALREFVKMGKPVWGTC 78
L V L++ GG+S L Y++ +R ++ GKP+ G C
Sbjct: 54 ALLDLVDGLLLTGGQSNVDPSLYGEEPSPSGGYYDPARDAFELALIRAALERGKPILGIC 113
Query: 79 AGLIFLANKAVGQKL 93
G+ L N A+G L
Sbjct: 114 RGMQLL-NVALGGTL 127
>gnl|CDD|153223 cd03129, GAT1_Peptidase_E_like, Type 1 glutamine amidotransferase
(GATase1)-like domain found in peptidase E_like
proteins. Type 1 glutamine amidotransferase
(GATase1)-like domain found in peptidase E_like
proteins. This group contains proteins similar to the
aspartyl dipeptidases Salmonella typhimurium peptidase E
and Xenopus laevis peptidase E and, extracellular
cyanophycinases from Pseudomonas anguilliseptica BI
(CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria
peptidase E is believed to play a role in degrading
peptides generated by intracellular protein breakdown or
imported into the cell as nutrient sources. Peptidase E
uniquely hydrolyses only Asp-X dipeptides (where X is
any amino acid), and one tripeptide Asp-Gly-Gly.
Cyanophycinases are intracellular exopeptidases which
hydrolyze the polymer cyanophycin (multi
L-arginyl-poly-L-aspartic acid) to the dipeptide
beta-Asp-Arg. Peptidase E and cyanophycinases are
thought to have a Ser-His-Glu catalytic triad which
differs from the Cys-His-Glu catalytic triad typical of
GATase1 domains by having a Ser in place of the reactive
Cys at the nucleophile elbow. Xenopus peptidase E is
developmentally regulated in response to thyroid hormone
and, it is thought to play a role in apoptosis during
tail reabsorption.
Length = 210
Score = 27.3 bits (61), Expect = 5.6
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 16 IAALKRLGVKGVEIRKPDQ---------LQNVSSLIIPGGE-STTMARLAEYHNLFPALR 65
AA +RLGV+ V + D L + + GG ++ L E L A+
Sbjct: 50 RAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRE-TPLLDAIL 108
Query: 66 EFVKMGKPVWGTCAGLIFLANKAVG 90
+ V G + GT AG + +G
Sbjct: 109 KRVARGVVIGGTSAGAAVMGETGIG 133
>gnl|CDD|172505 PRK14004, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 210
Score = 27.2 bits (60), Expect = 5.9
Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 49/192 (25%)
Query: 32 PDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGTCAG--LIFLANK 87
P+ ++N +LI+PG M L L + + V+ GKP++G C G ++F +++
Sbjct: 32 PETIENSKALILPGDGHFDKAMENLNST-GLRSTIDKHVESGKPLFGICIGFQILFESSE 90
Query: 88 AVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA-ELSVPALA------SQEGGPETFRGV 140
Q +++ G + +I+ FE + VP + ++ + +G+
Sbjct: 91 ETNQGTKKEQIEG-------LGYIKGKIKKFEGKDFKVPHIGWNRLQIRRKDKSKLLKGI 143
Query: 141 -------FIRAPAVLDV-GPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVR 192
FI + G + L DY Y + E+
Sbjct: 144 GDQSFFYFIHSYRPTGAEGNAITGLCDY--------YQEKFPAVVEKE------------ 183
Query: 193 QGNLLGTAFHPE 204
N+ GT FHPE
Sbjct: 184 --NIFGTQFHPE 193
>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase
domain and an AraC-type DNA-binding HTH domain
[Transcription].
Length = 328
Score = 27.2 bits (61), Expect = 6.1
Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 42 IIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGG 101
I+P R L LR + G + G C G LA G L+ G
Sbjct: 79 ILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLA--EAG-------LLDG 129
Query: 102 LDCTVH 107
T H
Sbjct: 130 RRATTH 135
>gnl|CDD|223025 PHA03253, PHA03253, UL35; Provisional.
Length = 609
Score = 27.6 bits (61), Expect = 6.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 179 ENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWY 212
EN +P+ K + AV+ G +FH AD Y
Sbjct: 149 ENGLPDSKFMKAVKLIYTTGNSFHNRPDADIEQY 182
>gnl|CDD|148361 pfam06714, Gp5_OB, Gp5 N-terminal OB domain. This domain is found
at the N terminus of the Gp5 baseplate protein of
bacteriophage T4. This domain binds to the Gp27 protein.
This domain has the common OB fold.
Length = 144
Score = 26.7 bits (59), Expect = 6.4
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 150 VGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
VG DV+VLA +V Y SS+ IQ+ N
Sbjct: 93 VGNDVNVLARGGK-DPEVGYGSSSNVIQDSN 122
>gnl|CDD|150843 pfam10232, Med8, Mediator of RNA polymerase II transcription
complex subunit 8. Arc32, or Med8, is one of the
subunits of the Mediator complex of RNA polymerase II.
The region conserved contains two alpha helices
putatively necessary for binding to other subunits
within the core of the Mediator complex. The N-terminus
of Med8 binds to the essential core Head part of
Mediator and the C-terminus hinges to Med18 on the
non-essential part of the Head that also includes Med20.
Length = 226
Score = 26.8 bits (59), Expect = 7.5
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 169 YSSSTVEIQEENAMPE-KKVIVAVRQGNLLGTAFHPELTADTR 210
SS VEI++ + + +++ AV+ G L A +
Sbjct: 155 ESSHRVEIEQTSEEEDTNQLVAAVKDGKGLRPAIRQASPMGGK 197
>gnl|CDD|225877 COG3340, PepE, Peptidase E [Amino acid transport and metabolism].
Length = 224
Score = 26.6 bits (59), Expect = 8.3
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 18 ALKRLG--VKGVEIRKPD------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK 69
AL +LG V + + KP +L + + GG + + + + L +RE VK
Sbjct: 57 ALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLDDIIRERVK 116
Query: 70 MGKPVWGTCAGLI 82
G P G AG
Sbjct: 117 AGTPYIGWSAGAN 129
>gnl|CDD|224297 COG1379, COG1379, PHP family phosphoesterase with a Zn ribbon
[General function prediction only].
Length = 403
Score = 27.1 bits (60), Expect = 8.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTV 106
G + L+ L N A KL G +LVG DC
Sbjct: 12 HYSGATSKLMVLPNIAEYAKLKGLDLVGTGDCLH 45
>gnl|CDD|220427 pfam09825, BPL_N, Biotin-protein ligase, N terminal. The function
of this structural domain is unknown. It is found to the
N terminus of the biotin protein ligase catalytic
domain.
Length = 364
Score = 26.9 bits (60), Expect = 8.7
Identities = 47/196 (23%), Positives = 70/196 (35%), Gaps = 56/196 (28%)
Query: 39 SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK---AVGQKLGG 95
+ L+ PGG R +R+FV+ G G CAG F +++ VG
Sbjct: 51 ALLVFPGGADLPYCR-DLNGPGNRKIRDFVRQGGAYLGFCAGGYFGSSRVEFEVGDP--T 107
Query: 96 QELVGGLDCTVHRNFF-----GSQIQSFE---------AELSVPALASQEGGPETFR--- 138
E+VG + FF G + F+ +L+V S P F
Sbjct: 108 MEVVGPREL----GFFPGTCRGPAFKGFQYNSEAGARAVKLNVNKAQS---LPSHFYSYY 160
Query: 139 ---GVFIRAPAVLDVGPDVDVLADYP----VPSNKVLYSSSTVEIQEENAMPEKKVIVAV 191
GVF+ A + +V++LA Y VPS + A+ V V
Sbjct: 161 NGGGVFVDA----EKYSNVEILARYAEDLDVPSG-----------DGKAAV----VYCKV 201
Query: 192 RQGNLLGTAFHPELTA 207
+G + T HPE
Sbjct: 202 GKGKAVLTGPHPEFNP 217
>gnl|CDD|217622 pfam03575, Peptidase_S51, Peptidase family S51.
Length = 154
Score = 26.1 bits (58), Expect = 9.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 33 DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80
D++ + + GG + + +L L +RE V+ G P G AG
Sbjct: 31 DKILEADVIYVGGGNTFHLLKLLRETGLDDIIREAVQAGLPYIGWSAG 78
>gnl|CDD|224982 COG2071, COG2071, Predicted glutamine amidotransferases [General
function prediction only].
Length = 243
Score = 26.5 bits (59), Expect = 9.9
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 13/65 (20%)
Query: 34 QLQNVSSLIIPGGESTTMARLAE-------YHNL------FPALREFVKMGKPVWGTCAG 80
L + LI+ GG + + E ++ +R ++ G P+ G C G
Sbjct: 57 YLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRG 116
Query: 81 LIFLA 85
L L
Sbjct: 117 LQLLN 121
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.402
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,187,399
Number of extensions: 1061769
Number of successful extensions: 1092
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1049
Number of HSP's successfully gapped: 91
Length of query: 215
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 122
Effective length of database: 6,812,680
Effective search space: 831146960
Effective search space used: 831146960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)