RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 028010
(215 letters)
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus
subtilis [TaxId: 1423]}
Length = 195
Score = 121 bits (303), Expect = 4e-35
Identities = 88/215 (40%), Positives = 120/215 (55%), Gaps = 33/215 (15%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
+ +GVL LQG+ EHI A++ G G+ +++P+QL V LI+PGGESTTM RL + +
Sbjct: 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
LREF GKP++GTCAGLI LA + G +G L+ V RN FG Q+ SFEA
Sbjct: 62 MEPLREFAAQGKPMFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 118
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
+ + +G E F GVFIRAP +L+ G +V+VL+++
Sbjct: 119 D------LTIKGLDEPFTGVFIRAPHILEAGENVEVLSEH-------------------- 152
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
IVA +QG LG +FHPELT D R +F
Sbjct: 153 ----NGRIVAAKQGQFLGCSFHPELTEDHRVTQLF 183
>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2
{Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 218
Score = 120 bits (302), Expect = 8e-35
Identities = 76/226 (33%), Positives = 101/226 (44%), Gaps = 31/226 (13%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEI---RKPDQLQNVSSLIIPGGESTTMAR--LA 55
+ +GVL+LQG F HI +L + + I R L L+IPGGESTT+ R
Sbjct: 3 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 62
Query: 56 EYHNLFPALRE-FVKMGKPVWGTCAGLIFLANKAVGQKLGG----QELVGGLDCTVHRNF 110
E L+ AL + KP+WGTCAG I L+ KL + GGLD T+ RNF
Sbjct: 63 ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 122
Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAP-AVLDVGPDVDVLADYPVPSNKVLY 169
+GSQ SF L++ + + IRAP + +V VLA +
Sbjct: 123 YGSQNDSFICSLNII--SDSSAFKKDLTAACIRAPYIREILSDEVKVLATF--------- 171
Query: 170 SSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
+ +I AV Q N LGT FHPEL T + F
Sbjct: 172 ---------SHESYGPNIIAAVEQNNCLGTVFHPELLPHTAFQQYF 208
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 202
Score = 119 bits (299), Expect = 2e-34
Identities = 91/215 (42%), Positives = 121/215 (56%), Gaps = 33/215 (15%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
M +GVL LQG+ EH+ A++ G + V ++K +QL+ + L++PGGESTTM RL + + L
Sbjct: 7 MKIGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMRRLIDRYGL 66
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
L++F GKP++GTCAGLI LA + VG + +G +D TV RN FG Q +SFEA
Sbjct: 67 MEPLKQFAAAGKPMFGTCAGLILLAKRIVGYD---EPHLGLMDITVERNSFGRQRESFEA 123
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEEN 180
E S +G + F GVFIRAP +++ G VDVLA Y
Sbjct: 124 E------LSIKGVGDGFVGVFIRAPHIVEAGDGVDVLATYNDR----------------- 160
Query: 181 AMPEKKVIVAVRQGNLLGTAFHPELTADTRWYIIF 215
IVA RQG LG +FHPELT D R F
Sbjct: 161 -------IVAARQGQFLGCSFHPELTDDHRLMQYF 188
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 232
Score = 51.5 bits (122), Expect = 1e-08
Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 19/205 (9%)
Query: 10 GSFNEH--IAALKRLGVKGVEIRKPD--QLQNVSSLIIPG-GESTTMARLAEYHNLFPAL 64
S N A++ LG + ++ P + S LI+PG G +
Sbjct: 13 ESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPI 72
Query: 65 REFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSV 124
RE+++ GKP+ G C GL L +V + +D + R + S
Sbjct: 73 REYIESGKPIMGICVGLQALFAGSVESP--KSTGLNYIDFKLSRFDDSEKPVPEIGWNSC 130
Query: 125 PALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPE 184
+ G + ++ + + + + K+ +
Sbjct: 131 IPSENLFFGLDPYKRYYFVHSF--AAILNSEKKKNLENDGWKIAKAK----------YGS 178
Query: 185 KKVIVAVRQGNLLGTAFHPELTADT 209
++ I AV + N+ T FHPE +
Sbjct: 179 EEFIAAVNKNNIFATQFHPEKSGKA 203
>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 200
Score = 39.6 bits (91), Expect = 9e-05
Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 38/216 (17%)
Query: 1 MVVGVLALQGSFNEH--IAALKRLGVK----GVEIRKPDQLQNVSSLIIPGGES-TTMAR 53
M +G++++ G N +KR +E+ + + L IPG R
Sbjct: 1 MRIGIISV-GPGNIMNLYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMR 59
Query: 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGS 113
++L +R+ V+ + V G C G+ L ++ L
Sbjct: 60 RLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEE---APGVKGLSLIEGNVVKLRSR 116
Query: 114 QIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSST 173
++ + F+ + V +Y
Sbjct: 117 RLPHMG-----WNEVIFKDTFPNGYYYFVHTYRAVCEEEHVLGTTEYD------------ 159
Query: 174 VEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADT 209
+ AVR+G +LG FHPE ++
Sbjct: 160 ----------GEIFPSAVRKGRILGFQFHPEKSSKI 185
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 195
Score = 36.2 bits (82), Expect = 0.001
Identities = 27/193 (13%), Positives = 42/193 (21%), Gaps = 31/193 (16%)
Query: 18 ALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVW 75
AL+ G + P + L++PG M E + R + +
Sbjct: 19 ALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLG 78
Query: 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPE 135
+ + G LV G +
Sbjct: 79 ICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNAL---------------- 122
Query: 136 TFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVIVAVRQGN 195
F G F + P K Y + + N
Sbjct: 123 EFGGAFAPLTGRHFYFANSYYGPLTPYSLGKGEYEG-------------TPFTALLAKEN 169
Query: 196 LLGTAFHPELTAD 208
LL FHPE +
Sbjct: 170 LLAPQFHPEKSGK 182
>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain
{Escherichia coli, HPII [TaxId: 562]}
Length = 156
Score = 30.5 bits (68), Expect = 0.090
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 41 LIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQK 92
+I+P G +A + + L E K KP+ F A + +
Sbjct: 68 VIVPCGNIADIADNGDANYY---LMEAYKHLKPIALAGDARKFKATIKIADQ 116
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus
subtilis [TaxId: 1423]}
Length = 278
Score = 29.9 bits (66), Expect = 0.18
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 9 QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
+ + ++ G +EIR D+L +A + H++
Sbjct: 13 NSNLKLDLELCEKHGYDYIEIRTMDKLPEYLK----DHSLDDLAEYFQTHHI 60
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli
[TaxId: 562]}
Length = 205
Score = 29.1 bits (64), Expect = 0.34
Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 32/198 (16%)
Query: 11 SFNEHIA-ALKRLGVKGVEIRKPDQ-LQNVSSLIIPGGESTTMARLAEYHNLFPALREFV 68
+ + +A ++ LGV E+ D + G + N A +
Sbjct: 16 QYTQLVARRVRELGVY-CELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVF 74
Query: 69 KMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA 128
+ G PV+G C G+ +A +GG + FG
Sbjct: 75 EAGVPVFGVCYGMQTMA-----------MQLGGHVEASNEREFGYAQVEVV--------- 114
Query: 129 SQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEENAMPEKKVI 188
RG+ A D L D + + + + I + I
Sbjct: 115 ---NDSALVRGIEDALTA------DGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAI 165
Query: 189 VAVRQGNLLGTAFHPELT 206
+A + G FHPE+T
Sbjct: 166 MANEEKRFYGVQFHPEVT 183
>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A
(SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}
Length = 217
Score = 28.1 bits (62), Expect = 0.77
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 9/55 (16%)
Query: 41 LIIPGG---------ESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN 86
LI+PGG ++ + L + + GKP+ C L
Sbjct: 89 LIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPK 143
>d1qaza_ a.102.3.1 (A:) Alginate lyase A1-III {Sphingomonas sp., A1
[TaxId: 28214]}
Length = 351
Score = 28.0 bits (62), Expect = 0.92
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 48 STTMARLAEYHNLFPALREFVKMGKPVW 75
+ + F E M P++
Sbjct: 309 RGDLNWIEYQRARFGFADELGFMTVPIF 336
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga
maritima [TaxId: 2336]}
Length = 230
Score = 27.7 bits (60), Expect = 1.0
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 188 IVAVRQGNLLGTAFHPELTADT--RWY 212
G +G FH E+ A T RW
Sbjct: 162 NQGFVYGKAVGLQFHIEVGARTMKRWI 188
>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234
{Listeria monocytogenes [TaxId: 1639]}
Length = 275
Score = 27.3 bits (59), Expect = 1.4
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 6 LALQGSFNEHIAALKRLGVKGVEIRKPD 33
L + SF + + G G+ +R +
Sbjct: 11 LGTEVSFPKRVKVAAENGFDGIGLRAEN 38
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 26.8 bits (58), Expect = 2.2
Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 41/209 (19%)
Query: 15 HIAALKRLGVKGVEIRKP-------DQLQNVSSLIIPGGES----TTMARLAEYHNLFPA 63
++ L+ G + V +R ++++ ++ PGG + A++A+
Sbjct: 30 YVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSI 89
Query: 64 LREFVKMGKPVWGTCAGLIFLANKAVGQKL--------GGQELVGGLDCTVHRNFFGSQI 115
PVWGTC G + + + + +H F +
Sbjct: 90 QSFDDGDYFPVWGTCLGF-EELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFP 148
Query: 116 QSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKVLYSSSTVE 175
L+V L + L+ N+ L V
Sbjct: 149 TELLLSLAVEPLTANFHK---------------------WSLSVKNFTMNEKLKKFFNVL 187
Query: 176 IQEENAMPEKKVIVAVRQGNLLGTAFHPE 204
+ E + + + G +HPE
Sbjct: 188 TTNTDGKIEFISTMEGYKYPVYGVQWHPE 216
>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435
{Salmonella typhimurium [TaxId: 90371]}
Length = 271
Score = 26.4 bits (57), Expect = 2.4
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 11 SFNEHIAALKRLGVKGVEIR 30
S +KRL VE+R
Sbjct: 19 SIEAFFRLVKRLEFNKVELR 38
>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 251
Score = 25.8 bits (57), Expect = 3.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 5 VLALQGSFNEHIAALKRLGVKGVEI 29
+G F+E + ++LG + VEI
Sbjct: 80 YAYSKGKFDEFLNECEKLGFEAVEI 104
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit
{Methylococcus capsulatus [TaxId: 414]}
Length = 384
Score = 26.0 bits (57), Expect = 3.6
Identities = 4/32 (12%), Positives = 6/32 (18%)
Query: 48 STTMARLAEYHNLFPALREFVKMGKPVWGTCA 79
+ P E + K W
Sbjct: 186 QMIQLERGFLAKIVPGFDESTAVPKAEWTNGE 217
>d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus
thermophilus [TaxId: 274]}
Length = 347
Score = 26.0 bits (56), Expect = 4.0
Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 24 VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIF 83
V+G L L +PGGE+ L Y + L E G
Sbjct: 39 VEGFAQEVAKALGVRHLLGLPGGEAAK--SLEVYGKVLSWLAEKGLPRNATLLVVGGGTL 96
Query: 84 LA 85
Sbjct: 97 TD 98
>d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 25.8 bits (55), Expect = 4.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 11 SFNEHIAALKRLGVKGVEIRKPD 33
F E AA ++ G VE P
Sbjct: 16 PFIERFAAARKAGFDAVEFLFPY 38
>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Bacillus subtilis [TaxId: 1423]}
Length = 249
Score = 25.5 bits (56), Expect = 4.6
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 5 VLALQGSFNEHIAALKRLGVKGVEI 29
Q NE G + +EI
Sbjct: 81 KYVSQKKVNEFHRYCTYFGCEYIEI 105
>d3bp8c1 d.95.1.1 (C:13-87) Glucose permease domain IIB
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 24.2 bits (53), Expect = 5.3
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 15 HIAALKRLGVKGVEIRKPDQLQ 36
A LK+LG GV + +Q
Sbjct: 36 DQAGLKKLGAAGV-VVAGSGVQ 56
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase
{Thermotoga maritima [TaxId: 2336]}
Length = 145
Score = 24.9 bits (54), Expect = 5.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 147 VLDVGPDVDVLADYPVPSNKV 167
V D G + DYP + KV
Sbjct: 31 VEDHGTYSEESVDYPDYAKKV 51
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 25.3 bits (54), Expect = 5.3
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 188 IVAVRQGNLLGTAFHPELT 206
+ + + G FHPE+
Sbjct: 152 AMKHEELPIYGVQFHPEVA 170
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic
phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId:
9606]}
Length = 415
Score = 25.5 bits (55), Expect = 5.4
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 13 NEHIAALKRLGVKGVEIR-----KPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREF 67
N H A+ L + E + + L+I +T + + ++ F A
Sbjct: 194 NHHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKHFDFLAEFNAKAND 253
Query: 68 VKMGKPVW 75
V W
Sbjct: 254 VNSNGIEW 261
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
[TaxId: 1396]}
Length = 417
Score = 25.6 bits (56), Expect = 5.7
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 2 VVGVLALQGSFNEHIAALKRLGVKGVEI 29
+ + +F + K+ G + +
Sbjct: 21 KIPEVTNWETFENDLRWAKQNGFYAITV 48
>d1n71a_ d.108.1.1 (A:) Aminoglycoside 6'-N-acetyltransferase
{Enterococcus faecium [TaxId: 1352]}
Length = 180
Score = 25.2 bits (54), Expect = 6.0
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 169 YSSSTVEIQEENAMPEKKVIVAVRQGNLLGTAFHPELTADTRWYI 213
Y S+ E EE PE+ + AV Q L+G T W +
Sbjct: 29 YGDSSAEEVEEMMNPERIAVAAVDQDELVGFIGAIPQYGITGWEL 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.402
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 775,522
Number of extensions: 33937
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 28
Length of query: 215
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 133
Effective length of database: 1,281,736
Effective search space: 170470888
Effective search space used: 170470888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)