BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028011
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of
Escherichia Coli, Northeast Structural Genomoics Target
Er58
Length = 184
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 82/128 (64%), Gaps = 7/128 (5%)
Query: 85 INKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRC 144
+ +GDITK +VD IVN AN + GGGG DGAIHRAAGP L +AC KV + + + C
Sbjct: 7 VVQGDITKLAVD----VIVNAANPSLXGGGGVDGAIHRAAGPALLDACLKVRQQQGD--C 60
Query: 145 PIGEARITPGFKLPASHVIHTVGPIY-DADSNPEASLRNAYKNSLSVAKENNIQYIAFTA 203
P G A IT LPA V+HTVGP++ + N + L++AY NSL + N+ +AF A
Sbjct: 61 PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPA 120
Query: 204 ISCGVYGY 211
IS GVYGY
Sbjct: 121 ISTGVYGY 128
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1
Length = 235
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 87/140 (62%), Gaps = 18/140 (12%)
Query: 76 KLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKV 135
+L+E +L+ + DITK VD AIVN AN +LGGGG DG IHRAAGP L + C
Sbjct: 59 QLNEKISLL--RSDITKLEVD----AIVNAANSSLLGGGGVDGCIHRAAGPLLTDEC--- 109
Query: 136 PEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS----LRNAYKNSLSVA 191
R C G+A+IT G++LPA +VIHTVGPI A P AS LR+ Y +SL +
Sbjct: 110 ---RTLQSCKTGKAKITGGYRLPAKYVIHTVGPI--AYGEPSASQAAELRSCYLSSLDLL 164
Query: 192 KENNIQYIAFTAISCGVYGY 211
E+ ++ +AF IS GV+GY
Sbjct: 165 LEHRLRSVAFPCISTGVFGY 184
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With
Adenosine-5- Diphosphoribose
Length = 214
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 8/137 (5%)
Query: 77 LSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVP 136
L+ L++ +GD+ + VD +VN +NE + GG A+ +AAGPEL+ C ++
Sbjct: 33 LAPGVVLIVQQGDLARLPVD----VVVNASNEDLKHYGGLAAALSKAAGPELQADCDQI- 87
Query: 137 EVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS--LRNAYKNSLSVAKEN 194
V+ E R G A I+ KLP HVIH VGP + P LR A + SL +A++
Sbjct: 88 -VKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKY 146
Query: 195 NIQYIAFTAISCGVYGY 211
+ IA AIS GV+G+
Sbjct: 147 KYRSIAIPAISSGVFGF 163
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED
SERINE Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or187
Length = 167
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 12/125 (9%)
Query: 87 KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPI 146
+GDIT++ DAIVN AN + G G GAI R GP ++E C ++ ++R +
Sbjct: 8 QGDITEFQ----GDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIR------V 57
Query: 147 GEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISC 206
GEA +T LP +VIH + D ++ E ++R A K++L A E ++ +AFTA+
Sbjct: 58 GEAAVTGAGNLPVRYVIHAA-VLGDEPASLE-TVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 207 GVYGY 211
V G
Sbjct: 116 WVGGL 120
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase
Osh55, Northeast Structural Genomics Consortium Target
Or130
Length = 167
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 12/125 (9%)
Query: 87 KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPI 146
+GDIT++ DAIVN AN + G G GAI R GP ++E C ++ ++R +
Sbjct: 8 QGDITEFQ----GDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIR------V 57
Query: 147 GEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISC 206
GEA +T LP +VIH + D ++ E ++R A K++L A E ++ +AFTA+
Sbjct: 58 GEAAVTGAGNLPVRYVIHAA-VLGDEPASLE-TVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 207 GVYGY 211
V G
Sbjct: 116 WVGGL 120
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed
Serine Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or185
Length = 167
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 12/125 (9%)
Query: 87 KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPI 146
+GDIT++ DAIVN AN + G G GAI R GP ++E C ++ ++R +
Sbjct: 8 QGDITEFQ----GDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIR------V 57
Query: 147 GEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISC 206
GEA +T LP +VIH + D ++ E ++R A K++L A E ++ +AFTA+
Sbjct: 58 GEAAVTGAGNLPVRYVIHAA-VLGDEPASLE-TVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 207 GVYGY 211
V G
Sbjct: 116 WVGGL 120
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|B Chain B, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|C Chain C, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|D Chain D, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
Length = 167
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 12/124 (9%)
Query: 87 KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPI 146
+GDIT++ DAIVN AN + G G GAI R GP ++E C ++ ++R +
Sbjct: 8 QGDITEFQ----GDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIR------V 57
Query: 147 GEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISC 206
GEA +T LP +VIH + D ++ E ++R A K++L A E ++ +AFTA+
Sbjct: 58 GEAAVTGAGNLPVRYVIHAA-VLGDEPASLE-TVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 207 GVYG 210
V G
Sbjct: 116 WVGG 119
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
pdb|4ETK|B Chain B, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
Length = 167
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 12/125 (9%)
Query: 87 KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPI 146
+GDIT++ DAIVN AN + G G GAI R GP ++E C ++ ++R +
Sbjct: 8 QGDITEFQ----GDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIR------V 57
Query: 147 GEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISC 206
GEA +T LP +VIH + D ++ E ++R A K++L A E ++ +AFTA+
Sbjct: 58 GEAAVTGAGNLPVRYVIHAA-VLGDEPASLE-TVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 207 GVYGY 211
V G
Sbjct: 116 WVGGL 120
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
pdb|2DX6|B Chain B, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
Length = 159
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 12/126 (9%)
Query: 85 INKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRC 144
+ +GDIT++ DAIVN AN + G G GAI R GP ++E C ++ ++R
Sbjct: 6 VVQGDITEFQ----GDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIR----- 56
Query: 145 PIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAI 204
+GEA +T LP +VIH + D ++ E ++R A K++L A E ++ +AF +
Sbjct: 57 -VGEAAVTGAGNLPVRYVIHA-AVLGDEPASLE-TVRKATKSALEKAVELGLKTVAFPLL 113
Query: 205 SCGVYG 210
GV G
Sbjct: 114 GTGVGG 119
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|C Chain C, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|D Chain D, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|2FXK|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|2FXK|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|3IID|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form A)
pdb|3IIF|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|B Chain B, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|C Chain C, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
Length = 211
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 83 LVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEV 142
L + + DI S+D SDA+V+P N GG + + G E EA V E+R +
Sbjct: 39 LQVVQADIA--SID--SDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVEA---VLELRKKN 91
Query: 143 R-CPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAF 201
+ A ++ G LPA VIH P++ AD E L KN L++A + ++ IAF
Sbjct: 92 GPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEEL-LEKTVKNCLALADDKKLKSIAF 150
Query: 202 TAISCGVYGY 211
+I G G+
Sbjct: 151 PSIGSGRNGF 160
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase
Length = 211
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Query: 83 LVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPE--LREACCKVPEVRP 140
L + +GDIT++ + AIVN AN+R+ GGG AI +A + L K
Sbjct: 23 LKLAQGDITQYP----AKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAXREQ 78
Query: 141 EVRCPI--GEARITPGFKLPA---SHVIHTVGPIYDADSNPE--ASLRNAYKNSLSVAKE 193
R I GE +TP L +V HTVGPI + E L A+ L A+E
Sbjct: 79 FGRDYIDHGEVVVTPAXNLEERGIKYVFHTVGPICSGXWSEELKEKLYKAFLGPLEKAEE 138
Query: 194 NNIQYIAFTAISCGVYG 210
++ IAF A+S G+YG
Sbjct: 139 XGVESIAFPAVSAGIYG 155
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
pdb|1HJZ|B Chain B, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
Length = 192
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Query: 83 LVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRA----AGPELREACCKVPEV 138
L + +GDIT++ + AIVN AN+R+ GGG AI +A AG + + E
Sbjct: 14 LKLAQGDITQYP----AKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQ 69
Query: 139 RPEVRCPIGEARITPGFKLPA---SHVIHTVGPIYDADSNPE--ASLRNAYKNSLSVAKE 193
GE +TP L +V HTVGPI + E L A+ L A+E
Sbjct: 70 FGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEE 129
Query: 194 NNIQYIAFTAISCGVYG 210
++ IAF A+S G+YG
Sbjct: 130 MGVESIAFPAVSAGIYG 146
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module
pdb|2BFQ|A Chain A, Macro Domains Are Adp-Ribose Binding Molecules
Length = 192
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Query: 83 LVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRA----AGPELREACCKVPEV 138
L + +GDIT++ + AIVN AN+R+ GGG AI +A AG + + E
Sbjct: 14 LKLAQGDITQYP----AKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQ 69
Query: 139 RPEVRCPIGEARITPGFKLPA---SHVIHTVGPIYDADSNPE--ASLRNAYKNSLSVAKE 193
GE +TP L +V HTVGPI + E L A+ L A+E
Sbjct: 70 FGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEE 129
Query: 194 NNIQYIAFTAISCGVYG 210
++ IAF A+S G+YG
Sbjct: 130 MGVESIAFPAVSAGIYG 146
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Query: 83 LVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRA----AGPELREACCKVPEV 138
L + +GDIT++ + AIVN AN+R+ GGG AI +A AG + + E
Sbjct: 14 LKLAQGDITQYP----AKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQ 69
Query: 139 RPEVRCPIGEARITPGFKLPA---SHVIHTVGPIYDADSNPE--ASLRNAYKNSLSVAKE 193
GE +TP L +V HTVGPI + E L A+ L A+E
Sbjct: 70 FGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEE 129
Query: 194 NNIQYIAFTAISCGVYG 210
++ IAF A+S G+YG
Sbjct: 130 MGVESIAFPAVSAGIYG 146
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|B Chain B, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|C Chain C, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|D Chain D, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1
Length = 193
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 83 LVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEV 142
L + + DI S+D SDA+V+P N GG + + G E EA V E+R +
Sbjct: 21 LQVVQADIA--SID--SDAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEA---VLELRKKN 73
Query: 143 R-CPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAF 201
+ A ++ G LPA VIH P++ +D E L KN L++A + ++ IAF
Sbjct: 74 GPLEVAGAAVSAGHGLPAKFVIHCNSPVWGSDKCEEL-LEKTVKNCLALADDRKLKSIAF 132
Query: 202 TAISCGVYGY 211
+I G G+
Sbjct: 133 PSIGSGRNGF 142
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
pdb|1ZR5|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
Length = 214
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 100 DAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVR-CPIGEARITPGFKLP 158
+AI+NP N + + + G E EA V E+R + + A ++ G LP
Sbjct: 55 EAIINPTNADIDLKDDLGNTLEKKGGKEFVEA---VLELRKKNGPLEVAGAAVSAGHGLP 111
Query: 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGY 211
A VIH P++ AD E L KN L++A + ++ IAF +I G G+
Sbjct: 112 AKFVIHCNSPVWGADKCEEL-LEKTVKNCLALADDKKLKSIAFPSIGSGRNGF 163
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQE|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQO|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|C Chain C, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|D Chain D, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
Length = 168
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 87 KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPI 146
+GDI + I+N AN + GGG GA+++ K PE +
Sbjct: 10 RGDIAT----ATEGVIINAANSKGQPGGGVCGALYK-----------KFPESFDLQPIEV 54
Query: 147 GEARITPGFKLPASHVIHTVGPIYDADSNPEA--SLRNAYKNSLSVAKENNIQYIAFTAI 204
G+AR+ G A H+IH VGP ++ S E L AY++ + +NN + +A +
Sbjct: 55 GKARLVKG---AAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLL 111
Query: 205 SCGVY 209
S G++
Sbjct: 112 STGIF 116
>pdb|3EWO|A Chain A, Ibv Nsp3 Adrp Domain
pdb|3EWO|B Chain B, Ibv Nsp3 Adrp Domain
pdb|3EWP|A Chain A, Complex Of Substrate Adp-Ribose With Ibv Nsp3 Adrp Domain
pdb|3EWP|B Chain B, Complex Of Substrate Adp-Ribose With Ibv Nsp3 Adrp Domain
Length = 177
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 101 AIVNPANERMLGGGGADGAIHRAAGPELREACCK-VPEVRPEVRCPIGEARITPGFKLPA 159
IVN ANE M GGG AI GP+ E C V + P+ + +TP F
Sbjct: 39 CIVNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKHGPQ------QKLVTPSFVKGI 92
Query: 160 SHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLF 213
V + VGP + DSN L AYK SV + Y+ +S G++G F
Sbjct: 93 QCVNNVVGPRH-GDSNLREKLVAAYK---SVLVGGVVNYVV-PVLSSGIFGVDF 141
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
Length = 670
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 96 DGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGF 155
D +A+VN AN G G AI++ + P + G AR+T
Sbjct: 355 DCQEEAVVNAANPLGRPGEGVCRAIYK-----------RWPTSFTDSATETGTARMTVCL 403
Query: 156 KLPASHVIHTVGPIYDADSNPEAS----LRNAYKNSLSVAKENNIQYIAFTAISCGVYG 210
VIH VGP D +PEA L+NAY + E+NI+ +A +S G+Y
Sbjct: 404 ---GKKVIHAVGP--DFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYA 457
>pdb|3EJF|A Chain A, Crystal Structure Of Ibv X-Domain At Ph 8.5
pdb|3EKE|A Chain A, Crystal Structure Of Ibv X-Domain At Ph 5.6
Length = 176
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 101 AIVNPANERMLGGGGADGAIHRAAGPELREACCK-VPEVRPEVRCPIGEARITPGFKLPA 159
IVN ANE M G G AI G + E C V + P+ R +TP F
Sbjct: 38 CIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQR------LVTPSFVKGI 91
Query: 160 SHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYLF 213
V + VGP + D+N L AYKN L + + Y+ +S G++G F
Sbjct: 92 QCVNNVVGPRH-GDNNLHEKLVAAYKNVLV---DGVVNYVV-PVLSLGIFGVDF 140
>pdb|2ACF|A Chain A, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
pdb|2ACF|B Chain B, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
pdb|2ACF|C Chain C, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
pdb|2ACF|D Chain D, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
Length = 182
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 73 GHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREAC 132
G+ KL+++ A I DI K + + IVN AN + GGG GA+++A +++
Sbjct: 14 GYLKLTDNVA--IKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKES 71
Query: 133 CKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKN 186
++ + +G + + G L A +H VGP +A + + L+ AY+N
Sbjct: 72 DDYIKLNGPLT--VGGSCLLSGHNL-AKKCLHVVGPNLNAGEDIQL-LKAAYEN 121
>pdb|2FAV|A Chain A, Crystal Structure Of Sars Macro Domain In Complex With
Adp- Ribose At 1.8 A Resolution
pdb|2FAV|B Chain B, Crystal Structure Of Sars Macro Domain In Complex With
Adp- Ribose At 1.8 A Resolution
pdb|2FAV|C Chain C, Crystal Structure Of Sars Macro Domain In Complex With
Adp- Ribose At 1.8 A Resolution
Length = 180
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 73 GHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAA-GPELREA 131
G+ KL+++ A I DI K + + IVN AN + GGG GA+++A G +E+
Sbjct: 15 GYLKLTDNVA--IKCVDIVKEAQSANPXVIVNAANIHLKHGGGVAGALNKATNGAXQKES 72
Query: 132 CCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKN 186
+ P +G + + G L A +H VGP +A + + L+ AY+N
Sbjct: 73 DDYIKLNGP---LTVGGSCLLSGHNL-AKKCLHVVGPNLNAGEDIQL-LKAAYEN 122
>pdb|3GPO|A Chain A, Crystal Structure Of Macro Domain Of Chikungunya Virus In
Complex With Adp-Ribose
pdb|3GPO|B Chain B, Crystal Structure Of Macro Domain Of Chikungunya Virus In
Complex With Adp-Ribose
pdb|3GPO|C Chain C, Crystal Structure Of Macro Domain Of Chikungunya Virus In
Complex With Adp-Ribose
pdb|3GPO|D Chain D, Crystal Structure Of Macro Domain Of Chikungunya Virus In
Complex With Adp-Ribose
Length = 168
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 20/127 (15%)
Query: 85 INKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRC 144
+ + DI K + +VN AN R L G G A+++ K PE
Sbjct: 14 VKRXDIAK----NDEECVVNAANPRGLPGDGVCKAVYK-----------KWPESFKNSAT 58
Query: 145 PIGEARITPGFKLPASHVIHTVGPIYD--ADSNPEASLRNAYKNSLSVAKENNIQYIAFT 202
P+G A+ P VIH VGP + ++S + L AY+ + +A
Sbjct: 59 PVGTAKTVXCGTYP---VIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIP 115
Query: 203 AISCGVY 209
+S GVY
Sbjct: 116 LLSTGVY 122
>pdb|3GPG|A Chain A, Crystal Structure Of Macro Domain Of Chikungunya Virus
pdb|3GPG|B Chain B, Crystal Structure Of Macro Domain Of Chikungunya Virus
pdb|3GPG|C Chain C, Crystal Structure Of Macro Domain Of Chikungunya Virus
pdb|3GPG|D Chain D, Crystal Structure Of Macro Domain Of Chikungunya Virus
pdb|3GPQ|A Chain A, Crystal Structure Of Macro Domain Of Chikungunya Virus In
Complex With Rna
pdb|3GPQ|B Chain B, Crystal Structure Of Macro Domain Of Chikungunya Virus In
Complex With Rna
pdb|3GPQ|C Chain C, Crystal Structure Of Macro Domain Of Chikungunya Virus In
Complex With Rna
pdb|3GPQ|D Chain D, Crystal Structure Of Macro Domain Of Chikungunya Virus In
Complex With Rna
Length = 168
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 20/127 (15%)
Query: 85 INKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRC 144
+ + DI K + +VN AN R L G G A+++ K PE
Sbjct: 14 VKRMDIAK----NDEECVVNAANPRGLPGDGVCKAVYK-----------KWPESFKNSAT 58
Query: 145 PIGEARITPGFKLPASHVIHTVGPIYD--ADSNPEASLRNAYKNSLSVAKENNIQYIAFT 202
P+G A+ P VIH VGP + ++S + L AY+ + +A
Sbjct: 59 PVGTAKTVMCGTYP---VIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIP 115
Query: 203 AISCGVY 209
+S GVY
Sbjct: 116 LLSTGVY 122
>pdb|2VRI|A Chain A, Structure Of The Nsp3 X-Domain Of Human Coronavirus Nl63
Length = 174
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 88 GDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIG 147
GDI+ S D +VN ANE +L GGG AI +L+ + + G
Sbjct: 24 GDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQ-------SLSKDYISSNG 76
Query: 148 EARITPGFKLPAS--HVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAIS 205
++ G L +V + VGP + + L AY S+ EN I + +S
Sbjct: 77 PLKVGAGVMLECEKFNVFNVVGP--RTGKHEHSLLVEAYN---SILFENGIPLMPL--LS 129
Query: 206 CGVYG 210
CG++G
Sbjct: 130 CGIFG 134
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 109 RMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIG 147
R+LG GG +G ++ + PE REA + E+ E +G
Sbjct: 271 RILGAGGVEGTVYPSLSPEEREALRRSAEILKEAAFALG 309
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 109 RMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIG 147
R+LG GG +G ++ + PE REA + E+ E +G
Sbjct: 271 RILGAGGVEGTVYPSLSPEEREALRRSAEILKEAAFALG 309
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 109 RMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIG 147
R+LG GG +G ++ + PE REA + E+ E +G
Sbjct: 271 RILGAGGVEGTVYPSLSPEEREALRRSAEILKEAAFALG 309
>pdb|2RL3|B Chain B, Crystal Structure Of The Oxa-10 W154h Mutant At Ph 7
Length = 248
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 15/117 (12%)
Query: 83 LVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEV 142
++ N+ + KW DG A+ + L GAI +A P ++ +V EVR +
Sbjct: 64 VIKNEHQVFKW--DGKPRAMKQWERDLTL-----RGAIQVSAVPVFQQIAREVGEVRMQK 116
Query: 143 ---RCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNI 196
+ G I+ G H G + + N L + Y N LS +KEN +
Sbjct: 117 YLKKFSYGNQNISGGI-----DKFHLEGQLRISAVNQVEFLESLYLNKLSASKENQL 168
>pdb|2RL3|A Chain A, Crystal Structure Of The Oxa-10 W154h Mutant At Ph 7
Length = 247
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 15/117 (12%)
Query: 83 LVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEV 142
++ N+ + KW DG A+ + L GAI +A P ++ +V EVR +
Sbjct: 65 VIKNEHQVFKW--DGKPRAMKQWERDLTL-----RGAIQVSAVPVFQQIAREVGEVRMQK 117
Query: 143 ---RCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNI 196
+ G I+ G H G + + N L + Y N LS +KEN +
Sbjct: 118 YLKKFSYGNQNISGGI-----DKFHLEGQLRISAVNQVEFLESLYLNKLSASKENQL 169
>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
Length = 693
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 134 KVPEVRPEVRCPIGEA----RITPGFKLPAS-HVIHTVGPIYDADSNPEASLRNAYKN 186
K EV ++R G++ + PG+KL A ++H P+YDA L N KN
Sbjct: 505 KALEVAYKIRKEFGKSFENGSLLPGWKLSAGILIVHYKHPLYDALEKARDLLNNKAKN 562
>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
Length = 686
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 134 KVPEVRPEVRCPIGEA----RITPGFKLPAS-HVIHTVGPIYDADSNPEASLRNAYKN 186
K EV ++R G++ + PG+KL A ++H P+YDA L N KN
Sbjct: 490 KALEVAYKIRKEFGKSFENGSLLPGWKLSAGILIVHYKHPLYDALEKARDLLNNKAKN 547
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,187,565
Number of Sequences: 62578
Number of extensions: 246894
Number of successful extensions: 635
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 33
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)